Psyllid ID: psy9640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK
Secondary Structure (PSIPRED)
cEEEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHEEEHHHcccccEEEEEccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccEEEcccccEEEcEEEEcccEEEEEEEEccHHHHHHHHHHcccccccEEEEEccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHcHHHHccccHccccEEEccccccHHHHHHHHHHHHHHHcccccEEEEccccHHHcHHHEEcccccHHHHHHHHHHHHHccccccEEEcccccEEccEEEccccEEEEEEEcHHHHHHHHHHHHccccEEEEEEEEEccccccEEEEEEEccccHHHcc
Coil and Loop (DISEMBL)
mkvfvdtdADVRLARRLKRDILARGRDLEGVIKQYVNMVKpafstfiapsmvepfvigicggsasgktTVATKIIESLNVPWVTLLSMDSFYRVHAdiivprggencVAIDLIVQHIHSQLqagvsvdmpqgytyegkrcavsKICGVSILRAGETMEQAVHDVCKDIRIGKILIqtnkatdepelyylrlpkdikdyk
Flexible Loop (DISEMBL)
mkvfvdtdadvrlarrlkrdilargrdlegvIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKIliqtnkatdepelyylrlpkdikdyk
Low Complexity Region (SEG)
MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK
Disordered region (IsUnstruct)
****VDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRL********
Disordered Region (DISOPRED)
MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKD*****
Disordered Region (DISEMBL)
MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK
Disordered Region (DISPRO)
MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q91YL3	548	Uridine-cytidine kinase-l	yes	N/A	0.969	0.352	0.436	5e-37
Q9NWZ5	548	Uridine-cytidine kinase-l	yes	N/A	0.974	0.354	0.434	1e-36
Q9FKS0	486	Uridine kinase-like prote	yes	N/A	0.944	0.386	0.363	5e-24
O65583	469	Uridine kinase-like prote	no	N/A	0.768	0.326	0.325	6e-24
Q9LK34	483	Uridine kinase-like prote	no	N/A	0.944	0.389	0.354	1e-23
Q9LTY6	465	Uridine kinase-like prote	no	N/A	0.969	0.415	0.355	2e-23
Q8VYB2	466	Uridine kinase-like prote	no	N/A	0.979	0.418	0.352	2e-22
O74427	454	Uridine kinase OS=Schizos	yes	N/A	0.974	0.427	0.334	2e-19
B1H116	261	Uridine-cytidine kinase 2	no	N/A	0.462	0.352	0.395	3e-19
Q9QYG8	261	Uridine-cytidine kinase 2	no	N/A	0.457	0.348	0.390	4e-19

>sp|Q91YL3|UCKL1_MOUSE Uridine-cytidine kinase-like 1 OS=Mus musculus GN=Uckl1 PE=1 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 126/229 (55%), Gaps = 36/229 (15%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTD+D+RL RRL+RDI  RGRD+EGVIKQY   VKPAF  +I P+M    +  I 
Sbjct: 222 MKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTMR---LADIV 278

Query: 61  GGSASGKTTVATKIIESLN----------------------VPWVTLLSMDSFYRVHADI 98
               SG T     I++ ++                      +P  TL  + S  +V    
Sbjct: 279 VPRGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPQ-TLSVLKSTPQVRGMH 337

Query: 99  IVPRGGENCV---------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGV 148
            + R  E             + L+++H  S L     +V  PQG  Y GK  A  +I GV
Sbjct: 338 TIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGV 397

Query: 149 SILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197
           SILRAGETME A+  VCKD+RIG ILIQTN+ T EPEL+YLRLPKDI D
Sbjct: 398 SILRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISD 446

May contribute to UTP accumulation needed for blast transformation and proliferation.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

>sp|Q9NWZ5|UCKL1_HUMAN Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 124/228 (54%), Gaps = 34/228 (14%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTD+D+RL RRL+RDI  RGRD+EGVIKQY   VKP+F  +I P+M    +  I 
Sbjct: 222 MKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMR---LADIV 278

Query: 61  GGSASGKTTVATKIIESLNV--------------------PWVTLLS-MDSFYRVHADII 99
               SG T     I++ ++                     P    LS + S  +V     
Sbjct: 279 VPRGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPRTLSVLKSTPQVRGMHT 338

Query: 100 VPRGGENCV---------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVS 149
           + R  E             + L+++H  S L      V  PQG  Y GK  A  +I GVS
Sbjct: 339 IIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCVVQTPQGQDYAGKCYAGKQITGVS 398

Query: 150 ILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197
           ILRAGETME A+  VCKD+RIG ILIQTN+ T EPEL+YLRLPKDI D
Sbjct: 399 ILRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISD 446

May contribute to UTP accumulation needed for blast transformation and proliferation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=UKL1 PE=1 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 109/220 (49%), Gaps = 32/220 (14%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDADVRLARR++RD + RGRD+  V++QY   VKPAF  F+ PS     VI   
Sbjct: 185 MKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 244

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP------RGGENCV------ 108
           GG       + T+ I        T L      +++ ++ V       RG    +      
Sbjct: 245 GGDNHVAVDLITQHIH-------TKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIREKDIS 297

Query: 109 ----------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETM 157
                      I L+V+H    L      V  P G  Y G      K+CGVSI+R+GE+M
Sbjct: 298 KHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGAVYTGVDFC-KKLCGVSIIRSGESM 356

Query: 158 EQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197
           E A+   CK I+IGKILI  +   +  +L Y +LP DI +
Sbjct: 357 ENALRACCKGIKIGKILIHRD-GDNGKQLIYEKLPHDISE 395

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|O65583|UKL4_ARATH Uridine kinase-like protein 4 OS=Arabidopsis thaliana GN=UKL4 PE=1 SV=2

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 106/255 (41%), Gaps = 102/255 (40%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FV TDADVRLARR+KRD +  GRD+  V+ QY   VKPAF  FI P+          
Sbjct: 170 MKIFVCTDADVRLARRIKRDTVENGRDIGTVLDQYSKFVKPAFDDFILPT---------- 219

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQH---- 116
                                           + +ADII+PRGG+N VAIDLIVQH    
Sbjct: 220 --------------------------------KKYADIIIPRGGDNHVAIDLIVQHICTK 247

Query: 117 ---------------IHSQLQ--------------------------------------- 122
                          IHS  Q                                       
Sbjct: 248 LGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPF 307

Query: 123 AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATD 182
               V  P G  Y G      ++CGVS++R+GE+ME A+   CK I+IGKILI   +  +
Sbjct: 308 TEKQVITPTGCVYSGVDFC-KRLCGVSVIRSGESMENALRACCKGIKIGKILIH-REGDN 365

Query: 183 EPELYYLRLPKDIKD 197
             +L Y +LP DI +
Sbjct: 366 GQQLVYEKLPNDISE 380

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q9LK34|UKL2_ARATH Uridine kinase-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=UKL2 PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 109/220 (49%), Gaps = 32/220 (14%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDADVRLARR++RD + RGRD++ V++QY   VKPAF  F+ PS     VI   
Sbjct: 185 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 244

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP------RGGENCV------ 108
           GG       +  + I        T L      +++ ++ V       RG    +      
Sbjct: 245 GGDNHVAVDLIVQHIH-------TKLGQHDLCKIYPNVFVIETTFQIRGMHTLIREKDIS 297

Query: 109 ----------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETM 157
                      I L+V+H    L      V  P G  Y G      K+CGVS++R+GE+M
Sbjct: 298 KHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYSGVDFC-KKLCGVSVIRSGESM 356

Query: 158 EQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197
           E A+   CK I+IGKILI  +   +  +L Y +LP DI +
Sbjct: 357 ENALRACCKGIKIGKILIHRD-GDNGMQLIYEKLPSDISE 395

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 18/211 (8%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDADVRL+RR++RD + RGR+++ V++QY   VKP+F  +I PSM    +I   
Sbjct: 151 MKIFVDTDADVRLSRRIQRDTVERGRNIQNVLEQYTKFVKPSFDEYIQPSMKYADIIIPR 210

Query: 61  GGSASGK-----TTVATKIIE-SLNVPWVTLLSMDSFYRVHA------DIIVPRGGENCV 108
           GG            + TK+ + +L   +  +  + S +++        DI   +      
Sbjct: 211 GGDNDVAIDLIVQHIRTKLCQHNLCKIYSNIFIISSTFQIKGMHTLIRDINTTKHDFVFY 270

Query: 109 A---IDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDV 164
           A   I L+V+H    L      +  P G  Y G      ++CGVS++R+GE+ME A+   
Sbjct: 271 ADRLIRLVVEHGLGHLPFTEKQITTPTGSVYTGVDFC-KRLCGVSVIRSGESMENALRAC 329

Query: 165 CKDIRIGKILIQTNKATDEPELYYLRLPKDI 195
           C  I+IGKILI   +  D  +L Y +LPKDI
Sbjct: 330 CNGIKIGKILIH-RENNDGRQLIYEKLPKDI 359

Involved in the pyrimidine salvage pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|Q8VYB2|UKL3_ARATH Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 18/213 (8%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVD DADVRLARR+KRD + +GRD+  V+ QY   VKPAF  FI P+     +I   
Sbjct: 167 MKIFVDADADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDFILPTKKYADIIIPR 226

Query: 61  GGSASGKTTVATKIIES------LNVPWVTLLSMDSFYRVHADIIVPRGGENCVA----- 109
           GG       +  + I +      L   +  L  + S +++     + R  +         
Sbjct: 227 GGDNHVAIDLIVQHIHTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSKTTKHDFIFY 286

Query: 110 ----IDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDV 164
               I L+V+H    L      V  P G  Y G      K+CGVS++R+GE+ME A+   
Sbjct: 287 SDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYSGVDFC-KKLCGVSVIRSGESMENALRAC 345

Query: 165 CKDIRIGKILIQTNKATDEPELYYLRLPKDIKD 197
           CK I+IGKILI   +  +  +L Y +LP DI +
Sbjct: 346 CKGIKIGKILIH-REGDNGQQLIYEKLPSDISE 377

Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 9

>sp|O74427|URK1_SCHPO Uridine kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=urk1 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 33/227 (14%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFI-----APSMVEP- 54
           + VF+DTD+DV L+RRL RDI  RGRD+ GV++QY   VKP++  F+        ++ P 
Sbjct: 145 VSVFLDTDSDVCLSRRLNRDINYRGRDIVGVLEQYNKFVKPSYENFVRRQLSYTDLIVPR 204

Query: 55  ---------FVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSF-YRVHADIIVPR 102
                     VI     + S ++    K I+SL   VP +  L ++    ++  +I   R
Sbjct: 205 GRDNKLAIDMVINFIRRTLSIQSETHVKNIDSLQQIVPTIPHLPLNLVQLKITPEISAIR 264

Query: 103 G---GENCVAIDL--IVQHIHSQLQ--AGVS-------VDMPQGYTYEGKRCAVSKICGV 148
                +N    DL   +  I + L   AG S       + +  G  +EG + A  ++CGV
Sbjct: 265 TILINKNTHPDDLQFFLSRIGTMLMNLAGDSLAYEKKTITLHNGNQWEGLQMA-KELCGV 323

Query: 149 SILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDI 195
           S+LR+G T+E A+      + +GKIL+Q NK T EP L+Y +LP+ I
Sbjct: 324 SVLRSGGTLETALCRQFPTVCLGKILVQINKVTQEPTLHYHKLPRGI 370

Catalyzes the conversion of uridine into UMP and cytidine into CMP in the pyrimidine salvage pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|B1H116|UCK2_XENTR Uridine-cytidine kinase 2 OS=Xenopus tropicalis GN=uck2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/134 (39%), Positives = 67/134 (50%), Gaps = 42/134 (31%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDAD RL+RR+ RDI  RGRDLE V+ QY+  VKPAF  F  P+          
Sbjct: 150 MKLFVDTDADTRLSRRVLRDINERGRDLEQVLTQYITFVKPAFEEFCLPT---------- 199

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 200 --------------------------------KKYADVIIPRGADNVVAINLIVQHIQDI 227

Query: 121 LQAGVSVDMPQGYT 134
           L  G++     GYT
Sbjct: 228 LNGGLTKRQTNGYT 241

Phosphorylates uridine and cytidine to uridine monophosphate and cytidine monophosphate. Does not phosphorylate deoxyribonucleosides or purine ribonucleosides. Can use ATP or GTP as a phosphate donor.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9QYG8|UCK2_RAT Uridine-cytidine kinase 2 OS=Rattus norvegicus GN=Uck2 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 66/133 (49%), Gaps = 42/133 (31%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDAD RL+RR+ RDI  RGRDLE ++ QY+  VKPAF  F  P+          
Sbjct: 151 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPT---------- 200

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 201 --------------------------------KKYADVIIPRGADNLVAINLIVQHIQDI 228

Query: 121 LQAGVSVDMPQGY 133
           L  G+S     GY
Sbjct: 229 LNGGLSKRQTNGY 241

Phosphorylates uridine and cytidine to uridine monophosphate and cytidine monophosphate. Does not phosphorylate deoxyribonucleosides or purine ribonucleosides. Can use ATP or GTP as a phosphate donor. Can also phosphorylate cytidine and uridine nucleoside analogs such as 6-azauridine, 5-fluorouridine, 4-thiouridine, 5-bromouridine, N(4)-acetylcytidine, N(4)-benzoylcytidine, 5-fluorocytidine, 2-thiocytidine, 5-methylcytidine, and N(4)-anisoylcytidine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
237874168	558	uridine-cytidine kinase 1-like 1 isoform	0.974	0.347	0.534	1e-48
157128925	541	uridine cytidine kinase i [Aedes aegypti	0.964	0.354	0.517	1e-47
357625031	554	uridine-cytidine kinase 1-like 1 isoform	0.994	0.357	0.5	1e-47
242021778	482	uridine cytidine kinase I, putative [Ped	0.964	0.398	0.508	3e-47
340720301	560	PREDICTED: uridine-cytidine kinase-like	0.994	0.353	0.513	4e-47
66518332	555	PREDICTED: uridine-cytidine kinase-like	0.994	0.356	0.513	4e-47
328779132	589	PREDICTED: uridine-cytidine kinase-like	0.994	0.336	0.513	5e-47
350417570	556	PREDICTED: uridine-cytidine kinase-like	0.994	0.356	0.513	6e-47
340720305	590	PREDICTED: uridine-cytidine kinase-like	0.994	0.335	0.513	6e-47
350417572	590	PREDICTED: uridine-cytidine kinase-like	0.994	0.335	0.513	8e-47

>gi|237874168|ref|NP_001153854.1| uridine-cytidine kinase 1-like 1 isoform 1 [Acyrthosiphon pisum]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/230 (53%), Positives = 143/230 (62%), Gaps = 36/230 (15%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDAD+RLARRLKRDI  RGRDL+GV+KQY NMVKP+FS +IAPSM+   +I   
Sbjct: 240 MKVFVDTDADIRLARRLKRDISQRGRDLQGVLKQYCNMVKPSFSHYIAPSMIHADIIVPR 299

Query: 61  GGSASGKTTVATKII----------------ESLNVPWV---------TLLSMDSFYRVH 95
           GG      TVA ++I                E+L + +V          L S      +H
Sbjct: 300 GGD----NTVAIELIVRHVHKQLQARGFKLRETLAMSYVGQPLPSSIHLLPSTPQTQGLH 355

Query: 96  ADII---VPRGGENCVA---IDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGV 148
             I     P+      +   I L+++   S L    V VD PQ   Y GKRCA  KICGV
Sbjct: 356 TFIRNKDTPKDEFIFYSKRLIRLVIEFALSLLPFKDVIVDTPQCVPYSGKRCASDKICGV 415

Query: 149 SILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY 198
           SILRAGETMEQAV DVCKDIRIGKILIQTN++T EPELYYLRLPKDIKDY
Sbjct: 416 SILRAGETMEQAVCDVCKDIRIGKILIQTNRSTGEPELYYLRLPKDIKDY 465

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128925|ref|XP_001661551.1| uridine cytidine kinase i [Aedes aegypti] gi|108872426|gb|EAT36651.1| AAEL011273-PA [Aedes aegypti]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/234 (51%), Positives = 144/234 (61%), Gaps = 42/234 (17%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTD+D+RLARRLKRDI  RGRDLEGV+KQY  MVKPA+S++IAP+M    +I   
Sbjct: 221 MKIFVDTDSDIRLARRLKRDIQQRGRDLEGVLKQYSTMVKPAYSSYIAPTMAHADIIVPR 280

Query: 61  GGSASGKTTVATKII----------------ESLNVPWV--------TLLSM-------D 89
           G S      VA ++I                E+L   ++         LLSM        
Sbjct: 281 GSS----NVVAIQLIVQHVHTQLQLRGFKLREALAHSYIGQPMPDSLKLLSMTPQVKGLH 336

Query: 90  SFYRVHADIIVPRGGENCVA---IDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKI 145
           +F R   +   PR      +   I L++++  S L    V VD PQG  YEGKR A  KI
Sbjct: 337 TFIR---NASTPRDEFIFYSKRLIRLVLEYALSLLPFKNVEVDTPQGVPYEGKRMACQKI 393

Query: 146 CGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           CGVSILRAGETMEQAV DVCK IRIGKILIQTN+ T EPELYYLRLPKDIKDY+
Sbjct: 394 CGVSILRAGETMEQAVSDVCKHIRIGKILIQTNQLTGEPELYYLRLPKDIKDYR 447

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625031|gb|EHJ75585.1| uridine-cytidine kinase 1-like 1 isoform 1 [Danaus plexippus]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/228 (50%), Positives = 140/228 (61%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDAD+RLARRL+RDI+ RGRDLEGV+KQY+  VKP++ ++IAP M    +I   
Sbjct: 238 MKVFVDTDADIRLARRLRRDIVQRGRDLEGVLKQYMTYVKPSYQSYIAPCMAHADIIVPR 297

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG      ++              K+ E L V  +     DS Y V  D    +G    +
Sbjct: 298 GGENKVAISLIVQHVHKQLQLRGFKVREKLAVAHIGQPVPDSLY-VLKDTPQVQGLHTFI 356

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            + L+++   S +  +  SVD PQG  Y G++C V KICGVSIL
Sbjct: 357 RNKDTPRDEFIFYSKRLMRLVIEFALSLMPYSDHSVDTPQGIPYTGRKCDVEKICGVSIL 416

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ TDEPELYYLRLPKDIKDY+
Sbjct: 417 RAGETMEQAVCDVCKDIRIGKILIQTNQQTDEPELYYLRLPKDIKDYQ 464

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021778|ref|XP_002431320.1| uridine cytidine kinase I, putative [Pediculus humanus corporis] gi|212516588|gb|EEB18582.1| uridine cytidine kinase I, putative [Pediculus humanus corporis]

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 142/234 (60%), Gaps = 42/234 (17%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTD DVRL RRL+RDI  R RDLEGV+KQY++MVKPAF  +IAPSMV   +I   
Sbjct: 162 MKVFVDTDPDVRLVRRLERDISTRKRDLEGVLKQYMDMVKPAFCFYIAPSMVHADLIVPR 221

Query: 61  GGSASGKTTVATKII----------------ESLNVPWV---------------TLLSMD 89
           GG    + TVA ++I                E L   ++                +L + 
Sbjct: 222 GG----ENTVAIELIVHHVHTQLQLRGFKLREELVSSYIGQPLPKSLHLLPSTPQILGLH 277

Query: 90  SFYR---VHADIIVPRGGENCVAIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKI 145
           +F R      D  +         I L+++   S L    + V+ PQG +Y GKRCA +KI
Sbjct: 278 TFIRNKETQRDEFIFYSKR---LIRLVIEFSLSLLPFEQIHVETPQGSSYAGKRCASTKI 334

Query: 146 CGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           CGVSILRAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 335 CGVSILRAGETMEQAVRDVCKDIRIGKILIQTNQETCEPELYYLRLPKDIKDYK 388

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720301|ref|XP_003398579.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 1 [Bombus terrestris] gi|340720303|ref|XP_003398580.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 2 [Bombus terrestris]

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 136/228 (59%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDADVRLARRL+RDI  RGRDLEGV+KQY  MV+PAF  +IAP MV   +I   
Sbjct: 243 MKVFVDTDADVRLARRLRRDISQRGRDLEGVLKQYSTMVQPAFYYYIAPFMVHADIIVPR 302

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG       +              K+ E L   ++      S Y +  D    +G    +
Sbjct: 303 GGDNEVAIELIVQHVHTQLQLRGFKLREKLAHSYIGQPLPSSLYLL-PDTPQIKGLHTFI 361

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            I L++++  S L    V V+ PQG  Y+GKR A  KICGVSIL
Sbjct: 362 RNKETYRDEFIFYSKRLIRLVIEYALSLLPFEDVRVETPQGVLYDGKRAATDKICGVSIL 421

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 422 RAGETMEQAVRDVCKDIRIGKILIQTNQQTGEPELYYLRLPKDIKDYK 469

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66518332|ref|XP_391856.2| PREDICTED: uridine-cytidine kinase-like 1-like isoform 1 [Apis mellifera] gi|380028822|ref|XP_003698085.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 1 [Apis florea]

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 136/228 (59%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDADVRLARRL+RDI  RGRDLEGV+KQY  MV+PAF  +IAP MV   +I   
Sbjct: 238 MKVFVDTDADVRLARRLRRDISQRGRDLEGVLKQYSTMVQPAFYYYIAPLMVHADIIVPR 297

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG       +              K+ E L   ++      S Y +  D    +G    +
Sbjct: 298 GGDNEVAIELIVQHVHTQLQLRGFKLREKLAHSYIGQPLPSSLYLL-PDTPQIKGLHTFI 356

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            I L++++  S L    V+V+ PQG  Y GKR A  KICGVSIL
Sbjct: 357 RNKETYRDEFIFYSKRLIRLVIEYALSLLPFEDVTVETPQGVLYNGKRAATDKICGVSIL 416

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 417 RAGETMEQAVRDVCKDIRIGKILIQTNQQTGEPELYYLRLPKDIKDYK 464

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779132|ref|XP_003249594.1| PREDICTED: uridine-cytidine kinase-like 1-like [Apis mellifera] gi|380028824|ref|XP_003698086.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 2 [Apis florea]

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 136/228 (59%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDADVRLARRL+RDI  RGRDLEGV+KQY  MV+PAF  +IAP MV   +I   
Sbjct: 272 MKVFVDTDADVRLARRLRRDISQRGRDLEGVLKQYSTMVQPAFYYYIAPLMVHADIIVPR 331

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG       +              K+ E L   ++      S Y +  D    +G    +
Sbjct: 332 GGDNEVAIELIVQHVHTQLQLRGFKLREKLAHSYIGQPLPSSLYLL-PDTPQIKGLHTFI 390

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            I L++++  S L    V+V+ PQG  Y GKR A  KICGVSIL
Sbjct: 391 RNKETYRDEFIFYSKRLIRLVIEYALSLLPFEDVTVETPQGVLYNGKRAATDKICGVSIL 450

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 451 RAGETMEQAVRDVCKDIRIGKILIQTNQQTGEPELYYLRLPKDIKDYK 498

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417570|ref|XP_003491487.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 1 [Bombus impatiens]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 135/228 (59%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDADVRLARRL+RDI  RGRDLEGV+KQY  MV+PAF  +IAP MV   +I   
Sbjct: 239 MKVFVDTDADVRLARRLRRDISQRGRDLEGVLKQYSTMVQPAFYYYIAPFMVHADIIVPR 298

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG       +              K+ E L   ++      S Y +  D    +G    +
Sbjct: 299 GGDNEVAIELIVQHVHTQLQLRGFKLREKLAHSYIGQPLPSSLYLL-PDTPQIKGLHTFI 357

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            I L++++  S L    V V+ PQG  Y GKR A  KICGVSIL
Sbjct: 358 RNKETYRDEFIFYSKRLIRLVIEYALSLLPFEDVRVETPQGVLYHGKRAATDKICGVSIL 417

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 418 RAGETMEQAVRDVCKDIRIGKILIQTNQQTGEPELYYLRLPKDIKDYK 465

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720305|ref|XP_003398581.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 3 [Bombus terrestris]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 136/228 (59%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDADVRLARRL+RDI  RGRDLEGV+KQY  MV+PAF  +IAP MV   +I   
Sbjct: 273 MKVFVDTDADVRLARRLRRDISQRGRDLEGVLKQYSTMVQPAFYYYIAPFMVHADIIVPR 332

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG       +              K+ E L   ++      S Y +  D    +G    +
Sbjct: 333 GGDNEVAIELIVQHVHTQLQLRGFKLREKLAHSYIGQPLPSSLYLL-PDTPQIKGLHTFI 391

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            I L++++  S L    V V+ PQG  Y+GKR A  KICGVSIL
Sbjct: 392 RNKETYRDEFIFYSKRLIRLVIEYALSLLPFEDVRVETPQGVLYDGKRAATDKICGVSIL 451

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 452 RAGETMEQAVRDVCKDIRIGKILIQTNQQTGEPELYYLRLPKDIKDYK 499

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417572|ref|XP_003491488.1| PREDICTED: uridine-cytidine kinase-like 1-like isoform 2 [Bombus impatiens]

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 135/228 (59%), Gaps = 30/228 (13%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MKVFVDTDADVRLARRL+RDI  RGRDLEGV+KQY  MV+PAF  +IAP MV   +I   
Sbjct: 273 MKVFVDTDADVRLARRLRRDISQRGRDLEGVLKQYSTMVQPAFYYYIAPFMVHADIIVPR 332

Query: 61  GGSASGKTTV------------ATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
           GG       +              K+ E L   ++      S Y +  D    +G    +
Sbjct: 333 GGDNEVAIELIVQHVHTQLQLRGFKLREKLAHSYIGQPLPSSLYLL-PDTPQIKGLHTFI 391

Query: 109 ----------------AIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSIL 151
                            I L++++  S L    V V+ PQG  Y GKR A  KICGVSIL
Sbjct: 392 RNKETYRDEFIFYSKRLIRLVIEYALSLLPFEDVRVETPQGVLYHGKRAATDKICGVSIL 451

Query: 152 RAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
           RAGETMEQAV DVCKDIRIGKILIQTN+ T EPELYYLRLPKDIKDYK
Sbjct: 452 RAGETMEQAVRDVCKDIRIGKILIQTNQQTGEPELYYLRLPKDIKDYK 499

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
FB|FBgn0022029	626	l(2)k01209 "lethal (2) k01209"	0.452	0.143	0.703	7.7e-46
ZFIN|ZDB-GENE-041014-345	541	si:ch211-243j20.2 "si:ch211-24	0.437	0.160	0.651	6.6e-40
UNIPROTKB|F1P819	554	UCKL1 "Uridine kinase" [Canis	0.432	0.155	0.613	5e-38
UNIPROTKB|E1BP85	548	UCKL1 "Uridine kinase" [Bos ta	0.432	0.156	0.609	1e-37
MGI|MGI:1915806	548	Uckl1 "uridine-cytidine kinase	0.432	0.156	0.609	1.3e-37
ZFIN|ZDB-GENE-090311-45	536	uckl1b "uridine-cytidine kinas	0.432	0.160	0.597	2.5e-37
UNIPROTKB|F8WAC3	548	UCKL1 "Uridine kinase" [Homo s	0.432	0.156	0.609	4.3e-37
UNIPROTKB|Q9NWZ5	548	UCKL1 "Uridine-cytidine kinase	0.432	0.156	0.609	4.3e-37
ZFIN|ZDB-GENE-040724-238	533	uckl1a "uridine-cytidine kinas	0.432	0.161	0.574	6.8e-37
UNIPROTKB|F1NB19	511	UCKL1 "Uridine kinase" [Gallus	0.432	0.168	0.586	1.1e-36

FB|FBgn0022029 l(2)k01209 "lethal (2) k01209" [Drosophila melanogaster (taxid:7227)]

 Score = 307 (113.1 bits), Expect = 7.7e-46, Sum P(2) = 7.7e-46
 Identities = 64/91 (70%), Positives = 70/91 (76%)

Query:   110 IDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDI 168
             I L++++  S       +V+ PQG  YEGKR    KICGVSILRAGETMEQAV DVCKDI
Sbjct:   446 IRLVIEYALSLFPFKKTTVETPQGVLYEGKRMESRKICGVSILRAGETMEQAVCDVCKDI 505

Query:   169 RIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
             RIGKILIQTN  T EPELYYLRLPKDIKDYK
Sbjct:   506 RIGKILIQTNLKTGEPELYYLRLPKDIKDYK 536

GO:0004849 "uridine kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

ZFIN|ZDB-GENE-041014-345 si:ch211-243j20.2 "si:ch211-243j20.2" [Danio rerio (taxid:7955)]

 Score = 271 (100.5 bits), Expect = 6.6e-40, Sum P(2) = 6.6e-40
 Identities = 58/89 (65%), Positives = 69/89 (77%)

Query:   112 LIVQHIHSQLQAG-VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L    V+V+ PQG  YEGKR +  +I GVSILRAGETMEQA+  VCKDIR+
Sbjct:   354 LLIEHALSFLPLKPVTVETPQGTVYEGKRLSGKRITGVSILRAGETMEQALMAVCKDIRL 413

Query:   171 GKILIQTNKATDEPELYYLRLPKDI-KDY 198
             GKILIQTN  T EPEL+YLRLPKDI +DY
Sbjct:   414 GKILIQTNHDTGEPELHYLRLPKDISEDY 442

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|F1P819 UCKL1 "Uridine kinase" [Canis lupus familiaris (taxid:9615)]

 Score = 247 (92.0 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
 Identities = 54/88 (61%), Positives = 62/88 (70%)

Query:   112 LIVQHIHSQL--QAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIR 169
             L+++H  S L  Q    V  PQG  Y GK  A  +I GVSILRAGETME A+  VCKD+R
Sbjct:   365 LLIEHALSFLPFQQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVR 424

Query:   170 IGKILIQTNKATDEPELYYLRLPKDIKD 197
             IG ILIQTN+ T EPEL+YLRLPKDI D
Sbjct:   425 IGTILIQTNQHTGEPELHYLRLPKDISD 452

GO:0044211 "CTP salvage" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E1BP85 UCKL1 "Uridine kinase" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
 Identities = 53/87 (60%), Positives = 61/87 (70%)

Query:   112 LIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L      V  PQG  Y GK  A  +I GVSILRAGETME A+  VCKD+RI
Sbjct:   360 LLIEHALSFLPFQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVRI 419

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             G ILIQTN+ T EPEL+YLRLPKDI D
Sbjct:   420 GTILIQTNQQTGEPELHYLRLPKDISD 446

GO:0044211 "CTP salvage" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

MGI|MGI:1915806 Uckl1 "uridine-cytidine kinase 1-like 1" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 53/87 (60%), Positives = 62/87 (71%)

Query:   112 LIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L     +V  PQG  Y GK  A  +I GVSILRAGETME A+  VCKD+RI
Sbjct:   360 LLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGVSILRAGETMEPALRAVCKDVRI 419

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             G ILIQTN+ T EPEL+YLRLPKDI D
Sbjct:   420 GTILIQTNQLTGEPELHYLRLPKDISD 446

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006222 "UMP biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

ZFIN|ZDB-GENE-090311-45 uckl1b "uridine-cytidine kinase 1-like 1b" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
 Identities = 52/87 (59%), Positives = 63/87 (72%)

Query:   112 LIVQHIHSQLQAGVS-VDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++   S L + V  V  PQG  YEG+     +I GVSILRAGETME A+  VCKD+RI
Sbjct:   348 LLIERALSFLPSQVHIVQTPQGEDYEGRIFHGKRITGVSILRAGETMEPALRAVCKDVRI 407

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             GKILIQTN+ T EPEL+YLRLPKDI +
Sbjct:   408 GKILIQTNQDTGEPELHYLRLPKDISE 434

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|F8WAC3 UCKL1 "Uridine kinase" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
 Identities = 53/87 (60%), Positives = 61/87 (70%)

Query:   112 LIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L      V  PQG  Y GK  A  +I GVSILRAGETME A+  VCKD+RI
Sbjct:   360 LLIEHALSFLPFQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVRI 419

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             G ILIQTN+ T EPEL+YLRLPKDI D
Sbjct:   420 GTILIQTNQLTGEPELHYLRLPKDISD 446

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q9NWZ5 UCKL1 "Uridine-cytidine kinase-like 1" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
 Identities = 53/87 (60%), Positives = 61/87 (70%)

Query:   112 LIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L      V  PQG  Y GK  A  +I GVSILRAGETME A+  VCKD+RI
Sbjct:   360 LLIEHALSFLPFQDCVVQTPQGQDYAGKCYAGKQITGVSILRAGETMEPALRAVCKDVRI 419

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             G ILIQTN+ T EPEL+YLRLPKDI D
Sbjct:   420 GTILIQTNQLTGEPELHYLRLPKDISD 446

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-040724-238 uckl1a "uridine-cytidine kinase 1-like 1a" [Danio rerio (taxid:7955)]

 Score = 236 (88.1 bits), Expect = 6.8e-37, Sum P(2) = 6.8e-37
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query:   112 LIVQHIHSQLQAG-VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L A   ++  PQG  Y+G R     I GVSILRAGETME A+  VCKD+RI
Sbjct:   340 LLIEHALSFLPAKPCTIQTPQGQEYKGCRFGGKGITGVSILRAGETMEPALRAVCKDVRI 399

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             GKILIQTN  + EPEL+YLRLP+DI +
Sbjct:   400 GKILIQTNLDSGEPELHYLRLPRDISE 426

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|F1NB19 UCKL1 "Uridine kinase" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 51/87 (58%), Positives = 62/87 (71%)

Query:   112 LIVQHIHSQLQAGV-SVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
             L+++H  S L     +V  PQG  YEG+  +  +I GVSILRAGETME A+  VCKD+RI
Sbjct:   324 LLIEHALSFLPFQTCTVQTPQGQDYEGRTYSGKQITGVSILRAGETMEPALRAVCKDVRI 383

Query:   171 GKILIQTNKATDEPELYYLRLPKDIKD 197
             G ILIQTN  T EPEL+YLRLPKDI +
Sbjct:   384 GTILIQTNCNTGEPELHYLRLPKDISE 410

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0044206 "UMP salvage" evidence=IEA

GO:0044211 "CTP salvage" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	199
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	2e-32
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	7e-28
TIGR00235	207	TIGR00235, udk, uridine kinase	9e-22
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	4e-21
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	3e-20
COG0035	210	COG0035, Upp, Uracil phosphoribosyltransferase [Nu	3e-17
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	6e-14
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	9e-13
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	4e-12
TIGR00235	207	TIGR00235, udk, uridine kinase	3e-10
PTZ00301	210	PTZ00301, PTZ00301, uridine kinase; Provisional	9e-08
TIGR01091	207	TIGR01091, upp, uracil phosphoribosyltransferase	1e-07
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-06
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	8e-06
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	1e-05
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	2e-05
PRK00129	209	PRK00129, upp, uracil phosphoribosyltransferase; R	3e-04
PRK14490	369	PRK14490, PRK14490, putative bifunctional molybdop	0.001
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	0.002
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	0.002
COG0237	201	COG0237, CoaE, Dephospho-CoA kinase [Coenzyme meta	0.003

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score =  115 bits (290), Expect = 2e-32
 Identities = 51/120 (42%), Positives = 63/120 (52%), Gaps = 42/120 (35%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +K+FVDTDADVRL RR++RDI+ RGRDLE VI QY+  VKP    FI P+          
Sbjct: 121 LKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTK--------- 171

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                             +AD+I+PRGG+N VAIDLIVQHI S+
Sbjct: 172 ---------------------------------RYADVIIPRGGDNHVAIDLIVQHIKSK 198

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score =  103 bits (260), Expect = 7e-28
 Identities = 43/122 (35%), Positives = 57/122 (46%), Gaps = 42/122 (34%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +K+FVDT  D+RL RRLKRD+  RGR LE VI QY++ V+P    FI PS          
Sbjct: 128 IKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPS---------- 177

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +ADII+P GG+N VAID++   I   
Sbjct: 178 --------------------------------KRYADIIIPEGGKNRVAIDILKAKIRQL 205

Query: 121 LQ 122
           L+
Sbjct: 206 LE 207

Length = 209

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 87.8 bits (218), Expect = 9e-22
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 42/122 (34%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +K+FVDT  D+RL RR++RDI  RGR L+ VI QY   V+P +  F+ P+          
Sbjct: 128 LKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTK--------- 178

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                             +AD+I+P GG N VAI+++   I   
Sbjct: 179 ---------------------------------QYADLIIPEGGRNEVAINVLDTKIKHL 205

Query: 121 LQ 122
           L+
Sbjct: 206 LE 207

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 86.2 bits (214), Expect = 4e-21
 Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 42/127 (33%)

Query: 2   KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICG 61
           K+FVDTDADVRL RR+KRD+  RGRDLE VI+QYV  V+P +  FI P+           
Sbjct: 131 KIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPT----------- 179

Query: 62  GSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQL 121
                                          + +ADII+P GG+N VA+DL+   I S L
Sbjct: 180 -------------------------------KKYADIIIPSGGKNEVAVDLLQAKIASSL 208

Query: 122 QAGVSVD 128
               + +
Sbjct: 209 SEQNNTN 215

Length = 218

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 83.8 bits (208), Expect = 3e-20
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 8/87 (9%)

Query: 56  VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--HADIIVPRGGE----NCVA 109
           +IGI GGS SGKTTVA +IIE L  P V ++S DS+Y+   H ++   +       +   
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFD 60

Query: 110 IDLIVQHIHSQLQAGVSVDMPQGYTYE 136
            DL++ H+   L+ G SV++P  Y ++
Sbjct: 61  FDLLISHLQD-LKNGKSVEIPV-YDFK 85

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]

 Score = 75.7 bits (187), Expect = 3e-17
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
           V ++ P G   EG + A  KI  V ILRAG  M + +  +    R+G I I  ++ T EP
Sbjct: 53  VEIETPLG-PTEGVQIAGKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEP 111

Query: 185 ELYYLRLPKDIKD 197
            LYY +LP+DI +
Sbjct: 112 VLYYEKLPEDIDE 124

Length = 210

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 67.1 bits (165), Expect = 6e-14
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 16/96 (16%)

Query: 51  MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAI 110
           M +P +IGI GGS SGKTTVA+ I E L    + ++  DS+Y+  + +      E  V  
Sbjct: 3   MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSF----EERVKT 58

Query: 111 ----------DLIVQHIHSQLQAGVSVDMPQGYTYE 136
                     DL+++H+   L+AG ++++P  Y Y 
Sbjct: 59  NYDHPDAFDHDLLIEHLK-ALKAGKAIEIPV-YDYT 92

Length = 209

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSM 51
           +K+ VD D ++   ++++RD+  RG  LE V        KP +  +I P  
Sbjct: 132 LKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSI-LRRKPDYVNYICPQF 181

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 50  SMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI-IVPRGGEN-- 106
              +  +IGI GGS SGKTTVA ++ E L V  V ++S+D +Y+  + +    R   N  
Sbjct: 4   KPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYD 63

Query: 107 ---CVAIDLIVQHIHSQLQAGVSVDMPQGYTY-EGKR 139
                 +DL+++H+   L+ G  VD+P  Y Y    R
Sbjct: 64  HPEAFDLDLLIEHLKD-LKQGKPVDLPV-YDYKTHTR 98

Length = 218

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 56  VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE------NCVA 109
           +IGI GGS SGKTTVA KI E L    + ++S D++Y+  + + +    +      +   
Sbjct: 8   IIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFD 67

Query: 110 IDLIVQHIHSQLQAGVSVDMP 130
            DL+ +H+ + L+ G  +D+P
Sbjct: 68  NDLLYEHLKN-LKNGSPIDVP 87

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|140322 PTZ00301, PTZ00301, uridine kinase; Provisional

 Score = 50.0 bits (119), Expect = 9e-08
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 3   VFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +FVDT  D+ L RR KRD+  RGR  E VI+QY   V+P +  ++ PS V   +I   
Sbjct: 131 IFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPS 188

Length = 210

>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
           V V+ P G T EG R    KI  V ILRAG  M   V  +  + ++G +    N+ T +P
Sbjct: 51  VEVETPLGET-EGGRILGKKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKP 109

Query: 185 ELYYLRLPKDIKD 197
             YY +LP+DI +
Sbjct: 110 VPYYSKLPEDIDE 122

A fairly deep split in phylogenetic and UPGMA trees separates this mostly prokaryotic set of uracil phosphoribosyltransferases from a mostly eukaryotic set that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 56  VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAID 111
           +I I G   SGK+T+A K+ E L +P   ++S+D   R      +  G  + + ID
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIP---VISLDDLLREEGLAELDDGELDDIDID 53

Length = 114

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 21 ILARGRDLEGVIKQYVNMVKPAFSTF-------------IAPSMVE---PFVIGICGGSA 64
          +     D    + ++++  +   +               IAP   E   P ++GI G   
Sbjct: 1  MAPPPADTAAALARFIDQERLPPAFAALAQDLHLPLLAKIAPWAQERGRPLIVGISGPQG 60

Query: 65 SGKTTVATKI---IESLNVPWVTLLSMDSFYRVHAD 97
          SGK+T++  I   + +  +     LS+D  Y  HAD
Sbjct: 61 SGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHAD 96

Length = 300

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVT--------LLSMDSFY 92
          +IG+ G S +GKTTVA   +       V             D FY
Sbjct: 1  IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFY 45

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 56  VIGICGGSASGKTTVATKI--IESLNVPWVTLLSMDSFYRVHADIIVPRG------GENC 107
           V+GI G S SGKTT A K+     +N     ++S+D +Y        PR        E+ 
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV---PRKTPRDEDGNYDFESI 57

Query: 108 VAIDLIVQHIHSQLQAGVSVDMPQ 131
           + +DL+ +++H  L  G  V++P 
Sbjct: 58  LDLDLLNKNLH-DLLNGKEVELPI 80

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
           V ++ P G    GKR A  K+  V ILRAG  M   V  +    R+G I +  ++ T EP
Sbjct: 53  VEIETPLG-KTTGKRIAGKKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEP 111

Query: 185 ELYYLRLPKDIKD 197
             YY++LP+DI +
Sbjct: 112 VEYYVKLPEDIDE 124

Length = 209

>gnl|CDD|237728 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESL 78
           +  PF I  CG S SGKTT+ T ++  L
Sbjct: 1  MLFHPFEIAFCGYSGSGKTTLITALVRRL 29

Length = 369

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 54  PFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSF 91
           PF+IGI G  A GK+T A  +   L+     P V L++MD F
Sbjct: 82  PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123

Length = 283

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2   KVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAP 49
            V++D   +V+ A +++RD+  RG  LE V+   +   KP F  +I P
Sbjct: 119 SVYLDISDEVKFAWKIQRDMAERGHSLEDVLAS-IEARKPDFEAYIDP 165

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
             +IG+ GG  SGK+TVA KI+  L  P   ++  D   R
Sbjct: 1  MMLIIGLTGGIGSGKSTVA-KILAELGFP---VIDADDVAR 37

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG0058|consensus	716		99.96
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.95
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.95
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.95
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.94
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.94
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
COG4987	573	CydC ABC-type transport system involved in cytochr	99.93
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.92
KOG0055|consensus	1228		99.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.92
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.92
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.92
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.92
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.92
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.92
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.92
KOG0055|consensus	1228		99.92
KOG0057|consensus	591		99.92
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.92
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.92
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.92
KOG0056|consensus	790		99.91
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.91
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.91
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.91
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.91
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.91
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.91
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.9
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.9
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.9
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.9
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.9
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.9
COG4988	559	CydD ABC-type transport system involved in cytochr	99.9
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.9
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.89
PLN03232	1495	ABC transporter C family member; Provisional	99.89
PLN03130	1622	ABC transporter C family member; Provisional	99.89
COG1123	539	ATPase components of various ABC-type transport sy	99.89
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.89
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.89
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.88
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.88
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.88
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.88
PTZ00243	1560	ABC transporter; Provisional	99.88
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.87
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.87
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.87
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.87
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.87
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.87
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.87
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.86
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.86
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.86
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.86
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.86
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.86
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.86
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.86
PLN03232	1495	ABC transporter C family member; Provisional	99.86
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.85
COG1123	539	ATPase components of various ABC-type transport sy	99.85
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.85
PLN03130	1622	ABC transporter C family member; Provisional	99.85
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.85
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.85
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.85
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.84
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.84
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.84
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.84
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.84
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.84
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.84
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.84
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.84
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.84
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.84
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.84
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.84
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.83
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.83
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.83
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.83
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.83
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.83
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.83
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.83
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.83
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.83
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.83
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.83
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.83
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.83
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.83
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.83
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.82
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.82
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.82
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.82
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.82
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.82
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.82
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.82
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.82
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.82
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.82
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.82
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.82
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.82
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.82
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.82
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.82
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.82
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.82
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.82
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.82
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.82
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.82
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.82
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.82
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.81
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.81
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.81
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.81
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.81
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.81
cd03246	173	ABCC_Protease_Secretion This family represents the	99.81
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.81
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.81
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.81
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK10908	222	cell division protein FtsE; Provisional	99.81
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.81
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.81
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.81
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.81
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.81
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.81
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.81
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.81
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.81
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.81
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.81
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.81
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.81
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.8
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.8
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.8
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.8
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.8
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.8
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.8
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.8
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.8
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.8
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.8
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.8
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.8
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.8
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.8
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.8
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.8
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.8
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.8
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.8
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.8
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.79
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.79
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.79
PRK10938	490	putative molybdenum transport ATP-binding protein	99.79
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.79
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.79
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.79
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.79
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.79
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.79
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.79
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.79
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.79
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.79
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.79
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.79
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.79
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.79
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.79
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.79
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.79
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.79
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.79
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.79
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.79
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.79
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.79
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.79
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.79
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.79
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.79
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.78
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.78
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.78
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.78
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.78
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.78
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.78
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.78
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.78
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.78
KOG0054|consensus	1381		99.78
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.78
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.78
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.78
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.78
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.78
COG4172	534	ABC-type uncharacterized transport system, duplica	99.78
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.77
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.77
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.77
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.77
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.77
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.77
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.77
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.77
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.77
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.77
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.77
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.77
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.77
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.77
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.77
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.77
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.77
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.77
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.77
COG4172	534	ABC-type uncharacterized transport system, duplica	99.77
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.77
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.76
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.76
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.76
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.76
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.76
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.76
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.76
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.76
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.76
PRK11147	635	ABC transporter ATPase component; Reviewed	99.76
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.76
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.76
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.76
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.76
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.76
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.76
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.76
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.76
PRK10938	490	putative molybdenum transport ATP-binding protein	99.76
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.76
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.76
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.75
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
COG4559	259	ABC-type hemin transport system, ATPase component	99.75
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.75
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.75
PRK11147	635	ABC transporter ATPase component; Reviewed	99.74
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.74
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.74
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.74
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.74
PRK13409	590	putative ATPase RIL; Provisional	99.74
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.74
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.74
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.74
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.74
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.74
PLN03073	718	ABC transporter F family; Provisional	99.73
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.73
COG0488	530	Uup ATPase components of ABC transporters with dup	99.73
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.72
KOG0054|consensus	1381		99.72
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.72
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.71
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.71
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.71
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.7
PLN03211	659	ABC transporter G-25; Provisional	99.7
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.69
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.69
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.69
PLN03073	718	ABC transporter F family; Provisional	99.69
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.69
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.69
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.69
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.67
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.67
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.67
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.67
COG0488	530	Uup ATPase components of ABC transporters with dup	99.66
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.66
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.66
PRK13409	590	putative ATPase RIL; Provisional	99.66
PTZ00243	1560	ABC transporter; Provisional	99.66
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.65
KOG0060|consensus	659		99.65
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.65
COG4178	604	ABC-type uncharacterized transport system, permeas	99.65
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.65
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.65
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.62
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.62
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.61
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.6
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.6
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.6
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.57
PLN03140	1470	ABC transporter G family member; Provisional	99.57
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.56
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.52
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.51
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.5
PLN03140	1470	ABC transporter G family member; Provisional	99.49
KOG0064|consensus	728		99.49
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.49
KOG0927|consensus	614		99.48
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.48
KOG0062|consensus	582		99.44
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.41
KOG2355|consensus	291		99.41
KOG0927|consensus	614		99.4
KOG0061|consensus	613		99.39
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.34
COG0035	210	Upp Uracil phosphoribosyltransferase [Nucleotide t	99.34
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.33
KOG0066|consensus	807		99.33
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.33
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.32
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.32
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.3
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.26
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.2
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.17
KOG0059|consensus	885		99.14
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.13
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.13
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.99
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.99
PF14681	207	UPRTase: Uracil phosphoribosyltransferase; PDB: 1V	98.99
KOG0062|consensus	582		98.98
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.97
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.96
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.93
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.9
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.9
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.89
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.89
PRK05480	209	uridine/cytidine kinase; Provisional	98.85
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.83
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.82
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.81
PTZ00301	210	uridine kinase; Provisional	98.8
PLN02541	244	uracil phosphoribosyltransferase	98.79
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.76
KOG1017|consensus	267		98.75
KOG0066|consensus	807		98.74
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.74
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.72
KOG4203|consensus	473		98.71
PLN02796	347	D-glycerate 3-kinase	98.7
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.7
KOG0065|consensus	1391		98.66
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.66
TIGR00767	415	rho transcription termination factor Rho. Members	98.65
cd01128	249	rho_factor Transcription termination factor rho is	98.62
PLN02318	656	phosphoribulokinase/uridine kinase	98.61
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	98.59
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.57
PRK05439	311	pantothenate kinase; Provisional	98.55
PLN02348	395	phosphoribulokinase	98.55
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.53
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.52
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.52
PLN03046	460	D-glycerate 3-kinase; Provisional	98.5
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.49
KOG0063|consensus	592		98.48
PRK07429	327	phosphoribulokinase; Provisional	98.47
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.45
PRK15494	339	era GTPase Era; Provisional	98.41
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.41
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.37
PRK15453	290	phosphoribulokinase; Provisional	98.37
PRK09825	176	idnK D-gluconate kinase; Provisional	98.35
PRK00300	205	gmk guanylate kinase; Provisional	98.34
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.34
TIGR01091	207	upp uracil phosphoribosyltransferase. that include	98.33
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.33
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.31
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.29
PRK06696	223	uridine kinase; Validated	98.26
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.26
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.24
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.24
PRK00129	209	upp uracil phosphoribosyltransferase; Reviewed	98.22
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.21
KOG0065|consensus	1391		98.21
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.2
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.17
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.17
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.14
PRK08233	182	hypothetical protein; Provisional	98.13
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.12
PRK07667	193	uridine kinase; Provisional	98.09
PRK03846	198	adenylylsulfate kinase; Provisional	98.08
PRK06547	172	hypothetical protein; Provisional	98.08
COG4240	300	Predicted kinase [General function prediction only	98.07
PRK07261	171	topology modulation protein; Provisional	98.05
PRK05541	176	adenylylsulfate kinase; Provisional	98.04
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.0
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.0
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.99
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.98
PRK08149	428	ATP synthase SpaL; Validated	97.97
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.97
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.97
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.97
PRK00889	175	adenylylsulfate kinase; Provisional	97.95
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.95
PRK08118	167	topology modulation protein; Reviewed	97.94
PRK07594	433	type III secretion system ATPase SsaN; Validated	97.94
KOG3308|consensus	225		97.93
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.93
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	97.93
PRK06217	183	hypothetical protein; Validated	97.92
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.92
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.91
PRK09862	506	putative ATP-dependent protease; Provisional	97.89
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.88
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.88
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.88
smart00382	148	AAA ATPases associated with a variety of cellular	97.87
PRK10416	318	signal recognition particle-docking protein FtsY;	97.87
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.86
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.86
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.85
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.84
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.83
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.81
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.81
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.8
PRK14738	206	gmk guanylate kinase; Provisional	97.8
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.8
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.8
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.78
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.78

>KOG0058|consensus

Probab=99.96  E-value=6.6e-30  Score=228.68  Aligned_cols=171  Identities=17%  Similarity=0.241  Sum_probs=127.1

Q ss_pred             eecCchhHHhhhhhcccccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640           4 FVDTDADVRLARRLKRDILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++|-.+.....+....+..++.|+++||+|.||.+ ..++|+| +||++++|+++|+||||||||||++.+|..++.|..
T Consensus       444 l~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~-lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts  522 (716)
T KOG0058|consen  444 LMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKN-LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS  522 (716)
T ss_pred             HhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcC-ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence            34444444444433344567789999999999876 4579999 999999999999999999999999999999888765


Q ss_pred             eeeecccchhccccc---------c------ccCCC-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----e
Q psy9640          83 VTLLSMDSFYRVHAD---------I------IVPRG-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----E  136 (199)
Q Consensus        83 ~~~i~~d~~~~~~~~---------~------~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~  136 (199)
                      +. +-.|+......+         .      .+...       .....+.+++..+.+....+.++..+|++|+|    .
T Consensus       523 G~-IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk  601 (716)
T KOG0058|consen  523 GR-ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK  601 (716)
T ss_pred             Ce-EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCc
Confidence            43 444443211111         0      01110       01145668888888777888889999999999    7


Q ss_pred             cceecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeC
Q psy9640         137 GKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTN  178 (199)
Q Consensus       137 g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~  178 (199)
                      |.+||||||||||||||++.                     ..+.+.+++.+.+|  |+|.|-
T Consensus       602 G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTV--lvIAHR  662 (716)
T KOG0058|consen  602 GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTV--LVIAHR  662 (716)
T ss_pred             cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeE--EEEehh
Confidence            88999999999999999976                     66667788888555  888873

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.6e-29  Score=202.87  Aligned_cols=150  Identities=18%  Similarity=0.142  Sum_probs=104.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch---------hccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF---------YRVH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~---------~~~~   95 (199)
                      .+++++|++.|.+.  .+|+| +||++.+||+++|+||||||||||+|+|+|+..+..+.+...+..         +..+
T Consensus         3 ~l~i~~v~~~f~~~--~vl~~-i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ   79 (248)
T COG1116           3 LLEIEGVSKSFGGV--EVLED-INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ   79 (248)
T ss_pred             eEEEEeeEEEeCce--EEecc-ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence            47889999999875  89999 999999999999999999999999999999987765443222110         0001


Q ss_pred             cccccC--CCCCCC--------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640          96 ADIIVP--RGGENC--------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus        96 ~~~~~~--~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                      ....++  ....|-        ...++-.+.+.+.+.   .+.+...-+..|++||||||||||||||++.         
T Consensus        80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~---~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE  156 (248)
T COG1116          80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE---LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE  156 (248)
T ss_pred             cCcccchhhHHhhheehhhccccchHhHHHHHHHHHH---HcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence            100010  011110        011111112212222   3455444455788999999999999999975         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                  |.+.+.++..+-+.|+|+||||-+
T Consensus       157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~  192 (248)
T COG1116         157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVD  192 (248)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence                        899999999999999999999744

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.95  E-value=2.3e-29  Score=212.87  Aligned_cols=150  Identities=15%  Similarity=0.137  Sum_probs=107.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-------cccc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-------RVHA   96 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-------~~~~   96 (199)
                      ..++++||+++|.+.  .+++| +|++|++||++++.|||||||||++|+|+|+..|..+ .|..++..       +...
T Consensus         4 ~~l~i~~v~k~yg~~--~av~~-isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~i   79 (352)
T COG3842           4 PALEIRNVSKSFGDF--TAVDD-ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPI   79 (352)
T ss_pred             ceEEEEeeeeecCCe--eEEec-ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhccc
Confidence            468999999999854  89999 9999999999999999999999999999998877654 33333221       1111


Q ss_pred             ccccCCC--C------CC---------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          97 DIIVPRG--G------EN---------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        97 ~~~~~~~--~------~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ++.+...  +      .|         ....+++.+.+.+.+.   .+.+....+..+.+|||||+||||||||+..   
T Consensus        80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~---lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~  156 (352)
T COG3842          80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALE---LVGLEGFADRKPHQLSGGQQQRVALARALVPEPK  156 (352)
T ss_pred             ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHH---HcCchhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence            1111110  0      11         0111223233323332   3455554455788999999999999999975   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                        |..++++++...++++|+|||||+
T Consensus       157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe  198 (352)
T COG3842         157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE  198 (352)
T ss_pred             hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence                              899999999999999999999987

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.95  E-value=1.4e-29  Score=231.62  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=122.9

Q ss_pred             hcccccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccc
Q psy9640          17 LKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHA   96 (199)
Q Consensus        17 ~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~   96 (199)
                      .......+.++++||+|+|.....++|+| +|++|++|+++||+|+||||||||+|+|.|++.|..+ .+..|++.....
T Consensus       463 ~~~~~~~g~I~~~nvsf~y~~~~~~vL~~-isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~I~~dg~dl~~i  540 (709)
T COG2274         463 IHLPKLQGEIEFENVSFRYGPDDPPVLED-LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-RILLDGVDLNDI  540 (709)
T ss_pred             ccccccCceEEEEEEEEEeCCCCcchhhc-eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEeHHhc
Confidence            34455567899999999998876689999 9999999999999999999999999999999887543 333443322211


Q ss_pred             ccc---------------cCCC------CCC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeE
Q psy9640          97 DII---------------VPRG------GEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSI  150 (199)
Q Consensus        97 ~~~---------------~~~~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~Qrvai  150 (199)
                      +..               +...      ..+ ..+.+++++++.....+.++..+|.+|++    .|..||||||||++|
T Consensus       541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal  620 (709)
T COG2274         541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL  620 (709)
T ss_pred             CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence            111               0000      011 23458888888777777888999999998    688999999999999


Q ss_pred             Eeccch-----------------hHHHHHhhccccc--eeEEEEEeCCCCC
Q psy9640         151 LRAGET-----------------MEQAVHDVCKDIR--IGKILIQTNKATD  182 (199)
Q Consensus       151 aRA~~~-----------------~~~~l~~~~p~~~--~~~~~~~~~~~~~  182 (199)
                      |||++.                 .+..+.+.+....  -|+|.|+|...+.
T Consensus       621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti  671 (709)
T COG2274         621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI  671 (709)
T ss_pred             HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh
Confidence            999976                 4444555555444  7789999977653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.2e-29  Score=210.27  Aligned_cols=150  Identities=12%  Similarity=0.107  Sum_probs=109.1

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------A   96 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------~   96 (199)
                      ..|+++||++.|++.  .++++ +|+++++|++++|+||||||||||||+|+|+..+..+.+ ..++.....       .
T Consensus         2 ~~i~l~~v~K~yg~~--~~l~~-i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I-~i~g~~vt~l~P~~R~i   77 (338)
T COG3839           2 AELELKNVRKSFGSF--EVLKD-VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI-LIDGRDVTDLPPEKRGI   77 (338)
T ss_pred             cEEEEeeeEEEcCCc--eeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCChhHCCE
Confidence            458999999999875  28999 999999999999999999999999999999888765443 333221111       0


Q ss_pred             ccccCCCC--C------C--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 DIIVPRGG--E------N--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~~~~~~~~--~------~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      .+.+....  .      |        ....+++.+.+.+..   ..+.+.+.++..|.+|||||+||||||||+..    
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva---~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v  154 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA---KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV  154 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHH---HHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence            11111100  0      0        011123333332222   34566677777899999999999999999976    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       |...+.+++...++|+|.|||||.
T Consensus       155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~  195 (338)
T COG3839         155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV  195 (338)
T ss_pred             EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence                             888999999999999999999986

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=4.3e-28  Score=193.84  Aligned_cols=151  Identities=13%  Similarity=0.084  Sum_probs=100.5

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch------------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF------------   91 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~------------   91 (199)
                      ++++||++.|...  ...+|++ ++|+|++|++++|+||||||||||+++|.++..|. .|.+..++.            
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~-v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~v~i~g~d~~~l~~~~~~~   79 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKD-VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLTKLSEKELAK   79 (226)
T ss_pred             cEEeeeEEEeccCCcceEeccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEcCcCCHHHHHH
Confidence            5689999999542  2479999 99999999999999999999999999998888774 444333321            


Q ss_pred             -hccccccccCCCC--CCCchHHHH--------------HHHHHHHHhcCceeecCCcee-eecceecCCeeeeeeEEec
Q psy9640          92 -YRVHADIIVPRGG--ENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYT-YEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        92 -~~~~~~~~~~~~~--~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~-~~g~~lSgGq~QrvaiaRA  153 (199)
                       ++...++.+....  .+-...+-+              .+.+ ..+  ...+.+..... ..+.+|||||+||||||||
T Consensus        80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~-~~l--~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA  156 (226)
T COG1136          80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAA-EEL--LEVLGLEDRLLKKKPSELSGGQQQRVAIARA  156 (226)
T ss_pred             HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHH-HHH--HHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence             1111122221111  111111111              1111 111  11234443333 4688999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +..                     ..+.+.+...+.+.++|.||||+..
T Consensus       157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l  205 (226)
T COG1136         157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL  205 (226)
T ss_pred             HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence            975                     7777888888888999999999874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=5.5e-28  Score=189.93  Aligned_cols=147  Identities=16%  Similarity=0.097  Sum_probs=98.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~   95 (199)
                      |+++||+++|...  .+|++ |++++++|++++|+||||||||||+|||.++..+. .|.+..|+...          ..
T Consensus         3 i~i~~l~K~fg~~--~VLkg-i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~-~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           3 IEIKNLSKSFGDK--EVLKG-ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             EEEEeeeEEeCCe--EEecC-cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC-CceEEECCEeccchhhHHHHHHh
Confidence            7899999999876  89999 99999999999999999999999999997665544 44444444211          01


Q ss_pred             cccccCC--CCCCC---------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPR--GGENC---------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~--~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .++.+..  ...+-               ...++..+...+.+   ..+.+....+..|.+|||||+||||||||+.-  
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL---~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELL---EKVGLADKADAYPAQLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHH---HHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence            1111111  11110               11122222221222   34666666667889999999999999999964  


Q ss_pred             ---------------hHHHHHhhcc---ccceeEEEEEeCC
Q psy9640         157 ---------------MEQAVHDVCK---DIRIGKILIQTNK  179 (199)
Q Consensus       157 ---------------~~~~l~~~~p---~~~~~~~~~~~~~  179 (199)
                                     +..++++.+.   +-+.|-|.|||+=
T Consensus       156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM  196 (240)
T COG1126         156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM  196 (240)
T ss_pred             CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence                           5555555544   4478889999853

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.9e-28  Score=191.45  Aligned_cols=152  Identities=17%  Similarity=0.160  Sum_probs=105.2

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch-----------
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF-----------   91 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~-----------   91 (199)
                      -++++|+++.|+..  ..+++++ |||++.+|+.+||+|+||||||||+++|+|+..+..+.+ ..++.           
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~-VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I-~~~G~~~~~~~~~~~~   80 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNN-VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI-LLDGKPLAPKKRAKAF   80 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcc-eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE-EECCcccCccccchhh
Confidence            47899999999765  1259999 999999999999999999999999999999988755443 33331           


Q ss_pred             hcccccc-ccCCCCCCCch-H-HHHHH------------HHHHHHhcCceeecCCc-eeeecceecCCeeeeeeEEeccc
Q psy9640          92 YRVHADI-IVPRGGENCVA-I-DLIVQ------------HIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        92 ~~~~~~~-~~~~~~~~~~~-~-~~~~~------------~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                      ++....+ +.+....||.- . +.+.+            .+.+.+   ..+.+|.. ++..|.+|||||+||||||||+.
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L---~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~  157 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALI  157 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHH---HHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence            1111101 11111122210 1 11111            111222   24566654 45578999999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      .                     +...|.++..+.+.|.|+|+||-..
T Consensus       158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~  204 (252)
T COG1124         158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL  204 (252)
T ss_pred             cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence            5                     7778888899999999999998653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=1.5e-27  Score=191.49  Aligned_cols=147  Identities=19%  Similarity=0.184  Sum_probs=105.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-c--------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-A--------   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-~--------   96 (199)
                      |+++|||++|.+.  .++++ +||+|++|++++++|||||||||++|+|-+++.|..+.+. .++..... .        
T Consensus         2 I~~~nvsk~y~~~--~av~~-v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~-i~g~~i~~~d~~~LRr~I   77 (309)
T COG1125           2 IEFENVSKRYGNK--KAVDD-VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL-IDGEDISDLDPVELRRKI   77 (309)
T ss_pred             ceeeeeehhcCCc--eeeee-eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE-ECCeecccCCHHHHHHhh
Confidence            6899999999865  89999 9999999999999999999999999999888877655443 22211110 0        


Q ss_pred             c-ccc-----C--CCCCC--------CchHHHHHHHHHHHHhcCceeecCC--ceeeecceecCCeeeeeeEEeccch--
Q psy9640          97 D-IIV-----P--RGGEN--------CVAIDLIVQHIHSQLQAGVSVDMPQ--GYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        97 ~-~~~-----~--~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      + ..+     +  .-.+|        .++.+.+.+...+.+.   .+.++.  +.+..|++|||||+|||.+|||+.+  
T Consensus        78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~---lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP  154 (309)
T COG1125          78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD---LVGLDPSEYADRYPHELSGGQQQRVGVARALAADP  154 (309)
T ss_pred             hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHH---HhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence            0 000     0  00111        2233444444423322   345543  3455899999999999999999986  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNK  179 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~  179 (199)
                                         ..+.+.+++..++-|.|+||||-
T Consensus       155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi  196 (309)
T COG1125         155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI  196 (309)
T ss_pred             CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH
Confidence                               77888899999999999999964

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.93  E-value=2.1e-27  Score=212.94  Aligned_cols=150  Identities=14%  Similarity=0.107  Sum_probs=108.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~   94 (199)
                      ..++++||+|+|++. +++|+| +||++++|++++|+||||||||||+++|+|++.|..+.+ ..|+...         .
T Consensus       333 ~~I~~~~vsf~Y~~~-~~vL~~-isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~i~g~~i~~~~~~lr~~  409 (529)
T TIGR02868       333 PTLELRDLSFGYPGS-PPVLDG-VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV-TLDGVSVSSLQDELRRR  409 (529)
T ss_pred             ceEEEEEEEEecCCC-Cceeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhHHHHHHhh
Confidence            359999999999764 369999 999999999999999999999999999999988764432 2222110         0


Q ss_pred             ccccccC-----CC-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 HADIIVP-----RG-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~~~-----~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ..-.++.     ..       .....+.+++.++++..........+|.|++|    .|.+||||||||++||||++.  
T Consensus       410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~  489 (529)
T TIGR02868       410 ISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA  489 (529)
T ss_pred             eEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence            0000100     00       01123456777777555555567788999998    578999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTN  178 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~  178 (199)
                                         +.+.+.+..++  .++|.|+|+
T Consensus       490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~--~TvIiItHr  528 (529)
T TIGR02868       490 PILLLDEPTEHLDAGTESELLEDLLAALSG--KTVVVITHH  528 (529)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcCC--CEEEEEecC
Confidence                               55556665555  456999996

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.6e-27  Score=202.91  Aligned_cols=153  Identities=12%  Similarity=0.105  Sum_probs=114.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-------   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-------   97 (199)
                      .++++||+|+|++...++|+| +||++++||.++|+|+|||||||++++|.|.+.+..+.+-..+.......+       
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~-~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i  414 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKN-FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI  414 (573)
T ss_pred             eeeeccceeecCCCccchhhc-cceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHH
Confidence            589999999999988899999 999999999999999999999999999999988765443222211000000       


Q ss_pred             -cccCCC-------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---
Q psy9640          98 -IIVPRG-------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        98 -~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                       +...+.             ..-+.+.++++++++.+...+...+.|.++++    .|.+|||||+||++|||+++.   
T Consensus       415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap  494 (573)
T COG4987         415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP  494 (573)
T ss_pred             hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence             011110             11134567888888776666777788888887    789999999999999999986   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                        +.+.+..-+.+-+  .|.|||+-.
T Consensus       495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kT--ll~vTHrL~  534 (573)
T COG4987         495 LWLLDEPTEGLDPITERQVLALLFEHAEGKT--LLMVTHRLR  534 (573)
T ss_pred             eEEecCCcccCChhhHHHHHHHHHHHhcCCe--EEEEecccc
Confidence                              6666666666544  499998544

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.92  E-value=1.4e-26  Score=213.98  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=112.2

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ...|+++||+|+|++..+++|+| +||++++|+.++|+|+||||||||+++|+|++.|..+. +..|+....        
T Consensus       475 ~~~I~~~~vsf~y~~~~~~vL~~-isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr  552 (710)
T TIGR03796       475 SGYVELRNITFGYSPLEPPLIEN-FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE-ILFDGIPREEIPREVLA  552 (710)
T ss_pred             CCeEEEEEEEEecCCCCCCcccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEeHHHCCHHHHH
Confidence            34699999999998655689999 99999999999999999999999999999999876433 322221110        


Q ss_pred             -c-cccccC----------C--CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 -H-ADIIVP----------R--GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 -~-~~~~~~----------~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       . .-.++.          +  ......+.+++.++++..........+|.++++    .|..||||||||++||||++.
T Consensus       553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~  632 (710)
T TIGR03796       553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR  632 (710)
T ss_pred             hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence             0 000000          0  001123456777777555555566678998887    688999999999999999976


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                       .+..+.+.+.....+.|.|+|+..+
T Consensus       633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~  674 (710)
T TIGR03796       633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLST  674 (710)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                             3334444444456788999997664

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>KOG0055|consensus

Probab=99.92  E-value=2e-26  Score=216.29  Aligned_cols=159  Identities=16%  Similarity=0.150  Sum_probs=118.6

Q ss_pred             ccccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc
Q psy9640          19 RDILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD   97 (199)
Q Consensus        19 ~~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~   97 (199)
                      +....++|+++||+|.||.+ ..++|+| +|+++++|+.+||||||||||||++.+|-.+++|..+. +..|+......+
T Consensus       981 ~~~~~G~I~~~~V~F~YPsRP~~~Il~~-l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~-V~IDg~dik~ln 1058 (1228)
T KOG0055|consen  981 LPNVKGDIEFRNVSFAYPTRPDVPVLNN-LSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK-VKIDGVDIKDLN 1058 (1228)
T ss_pred             cccceeEEEEeeeEeeCCCCCCchhhcC-CcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe-EEECCcccccCC
Confidence            34455679999999999874 4579999 99999999999999999999999999998888876543 444433211111


Q ss_pred             ----------cccCCCC----------C--CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEE
Q psy9640          98 ----------IIVPRGG----------E--NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSIL  151 (199)
Q Consensus        98 ----------~~~~~~~----------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~Qrvaia  151 (199)
                                ..++...          +  ...+.+++.++++....+.++..+|+||+|    .|.+||||||||||||
T Consensus      1059 l~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1059 LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred             HHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence                      1111110          1  124668899999888888999999999999    6899999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ||++.                     .++.|-++++++  |+|+|.|---|
T Consensus      1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~~gR--T~IvIAHRLST 1187 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAMEGR--TTIVIAHRLST 1187 (1228)
T ss_pred             HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCC--cEEEEecchhh
Confidence            99986                     444444555552  36888885444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.3e-26  Score=185.52  Aligned_cols=147  Identities=14%  Similarity=0.170  Sum_probs=102.2

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe------------------eee
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW------------------VTL   85 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~------------------~~~   85 (199)
                      ..|+++|+++.|.+.  ++|+| |||++++|++++|+||||||||||+|.|+|++.|..                  +|+
T Consensus         3 ~~i~v~nl~v~y~~~--~vl~~-i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY   79 (254)
T COG1121           3 PMIEVENLTVSYGNR--PVLED-ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY   79 (254)
T ss_pred             cEEEEeeeEEEECCE--eeeec-cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence            458999999999876  59999 999999999999999999999999999999887643                  444


Q ss_pred             ecccchh-cccc----cc-ccC----CC---CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEe
Q psy9640          86 LSMDSFY-RVHA----DI-IVP----RG---GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        86 i~~d~~~-~~~~----~~-~~~----~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                      ++|.... ....    ++ ...    ..   ..+..+.+.+.++| +........+.      .-.+|||||+|||-|||
T Consensus        80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL-~~Vgm~~~~~r------~i~~LSGGQ~QRV~lAR  152 (254)
T COG1121          80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEAL-ERVGMEDLRDR------QIGELSGGQKQRVLLAR  152 (254)
T ss_pred             cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHH-HHcCchhhhCC------cccccCcHHHHHHHHHH
Confidence            4442210 0000    00 000    00   11223334555555 22221222233      33489999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      |++.                     +.+.+.++-.+ +.+.+.|+||-..
T Consensus       153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~  201 (254)
T COG1121         153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL  201 (254)
T ss_pred             HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH
Confidence            9975                     77778887777 9999999998774

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.92  E-value=8.6e-27  Score=214.75  Aligned_cols=156  Identities=15%  Similarity=0.103  Sum_probs=111.4

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      ..++++||+|+|++..+++|+| +||++++|+.++|+|+||||||||+++|+|++.|..+. +..|+...          
T Consensus       450 ~~I~~~nvsf~Y~~~~~~vL~~-isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~  527 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDGPLILDD-VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS-VFYDGQDLAGLDVQAVRR  527 (686)
T ss_pred             ceEEEEEEEEEcCCCCccceee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEEcCcCCHHHHHh
Confidence            4699999999997655689999 99999999999999999999999999999999875433 22222110          


Q ss_pred             cccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          94 VHADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        94 ~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ...-.++...           ..++.+.+++.++++..........+|.++++    .|..||||||||++||||++.  
T Consensus       528 ~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p  607 (686)
T TIGR03797       528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP  607 (686)
T ss_pred             ccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            0000011100           01234556777777555555566688999888    678999999999999999976  


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     .+..+.+.+.....+.|.|+|+.++
T Consensus       608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~  647 (686)
T TIGR03797       608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLST  647 (686)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHH
Confidence                           3344444444445688999997764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.8e-26  Score=188.55  Aligned_cols=149  Identities=20%  Similarity=0.193  Sum_probs=105.8

Q ss_pred             cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------
Q psy9640          26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------   92 (199)
Q Consensus        26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------   92 (199)
                      |++++|++.|...   ...+++| |||+|++|+++||+|.||||||||+|++-++-.|..+.++ .|+..          
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~-vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~-v~G~di~~l~~~~Lr   79 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDD-VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF-VDGQDLTALSEAELR   79 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeecc-ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE-EcCEecccCChHHHH
Confidence            6899999999762   2479999 9999999999999999999999999998766666554433 33210          


Q ss_pred             --ccccccccCC-------CC-CC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          93 --RVHADIIVPR-------GG-EN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        93 --~~~~~~~~~~-------~~-~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                        +...++.+..       .. .|        ..+-+++.+.+.+.+   ..+.++...+..|.+|||||||||+||||+
T Consensus        80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elL---elVgL~dk~~~yP~qLSGGQKQRVaIARAL  156 (339)
T COG1135          80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELL---ELVGLSDKADRYPAQLSGGQKQRVAIARAL  156 (339)
T ss_pred             HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHH---HHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence              1111121111       00 11        112233433342333   346777666678999999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNK  179 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~  179 (199)
                      ..                     +.+.|.++....++|.|+|+|.-
T Consensus       157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm  202 (339)
T COG1135         157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM  202 (339)
T ss_pred             hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence            75                     88889999999999999999853

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.92  E-value=1.9e-26  Score=209.14  Aligned_cols=152  Identities=13%  Similarity=0.094  Sum_probs=110.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH--------   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~--------   95 (199)
                      ..++++||+|.|++. +++|+| +||++++|++++|+|+||||||||+++|+|++ |.. |.+..|+.....        
T Consensus       348 ~~i~~~~vsf~~~~~-~~vL~~-i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~-G~I~i~g~~i~~~~~~~lr~  423 (588)
T PRK11174        348 VTIEAEDLEILSPDG-KTLAGP-LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ-GSLKINGIELRELDPESWRK  423 (588)
T ss_pred             ceEEEEeeEEeccCC-Ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC-cEEEECCEecccCCHHHHHh
Confidence            359999999876543 479999 99999999999999999999999999999999 653 444444321100        


Q ss_pred             --cccccC-----CC-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          96 --ADIIVP-----RG-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        96 --~~~~~~-----~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                        .-.++.     ..       .....+.+++.++++..........+|.|++|    .|.+||||||||++||||++. 
T Consensus       424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~  503 (588)
T PRK11174        424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP  503 (588)
T ss_pred             heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence              000110     00       01124557788888665656667789999888    678999999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  -++|.|+|+..+
T Consensus       504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~~--~TvIiItHrl~~  546 (588)
T PRK11174        504 CQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQLED  546 (588)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhCC--CEEEEEecChHH
Confidence                                55666666655  456999997654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.7e-26  Score=187.64  Aligned_cols=149  Identities=11%  Similarity=0.085  Sum_probs=103.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--c-------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--H-------   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--~-------   95 (199)
                      .|.++|+++.|+..  .+++| |++.|+.|+.+++.||||||||||+|+|+|+..|..+.++..+.....  .       
T Consensus         2 ~i~i~~~~~~~~~~--~a~~d-i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~   78 (345)
T COG1118           2 SIRINNVKKRFGAF--GALDD-ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK   78 (345)
T ss_pred             ceeehhhhhhcccc--ccccc-ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence            47889999999887  78999 999999999999999999999999999999998876544433221000  0       


Q ss_pred             -----------cccc------cC--CCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          96 -----------ADII------VP--RGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        96 -----------~~~~------~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                                 ..+.      +.  .....+ ....+...+.+.+.   .+++..--+..|.+|||||+||||+|||+..
T Consensus        79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p-~~~~~r~rv~elL~---lvqL~~la~ryP~QLSGGQrQRVALARALA~  154 (345)
T COG1118          79 VGFVFQHYALFPHMTVADNIAFGLKVRKERP-SEAEIRARVEELLR---LVQLEGLADRYPAQLSGGQRQRVALARALAV  154 (345)
T ss_pred             eeEEEechhhcccchHHhhhhhcccccccCC-ChhhHHHHHHHHHH---HhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence                       0000      00  000001 11122222212221   2333332244688999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                           +...|.+++...++++|+|+||++
T Consensus       155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e  199 (345)
T COG1118         155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE  199 (345)
T ss_pred             CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence                                 888889999999999999999987

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.92  E-value=5.2e-26  Score=175.53  Aligned_cols=151  Identities=16%  Similarity=0.129  Sum_probs=96.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc-----------hhcc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS-----------FYRV   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~-----------~~~~   94 (199)
                      |+++||++.|++. +++|+| +||+|++||++-++||||||||||+|+|.+...|..+.++..+-           +.+.
T Consensus         2 I~f~~V~k~Y~~g-~~aL~~-vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           2 IRFENVSKAYPGG-REALRD-VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             eeehhhhhhcCCC-chhhhC-ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            6899999999877 679999 99999999999999999999999999999988776443322210           0111


Q ss_pred             ccccccC-------CCC-CC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          95 HADIIVP-------RGG-EN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~~~-------~~~-~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ..+..+.       +.. +|        ......+.+.+.+.+.   .+.+......-|.+|||||+|||+||||...  
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~---~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P  156 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLD---LVGLKHKARALPSQLSGGEQQRVAIARAIVNQP  156 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHH---HhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence            1111110       000 11        0111222222212221   2333333333466899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                         ++..+.+ +..++.++|.+|||.+.+
T Consensus       157 ~vLlADEPTGNLDp~~s~~im~lfee-inr~GtTVl~ATHd~~lv  200 (223)
T COG2884         157 AVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV  200 (223)
T ss_pred             CeEeecCCCCCCChHHHHHHHHHHHH-HhhcCcEEEEEeccHHHH
Confidence                               2222222 335689999999998754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.92  E-value=5.4e-26  Score=185.02  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=99.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee---------------------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV---------------------   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~---------------------   83 (199)
                      .++++|+++.|++.  +++++ +||++++|++++|+||||||||||+|+|+|.+.|..+                     
T Consensus         2 ~L~~~~ls~~y~~~--~il~~-ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYGGK--PILDD-LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEEEEEECCe--eEEec-ceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            37899999999865  89999 9999999999999999999999999999999876432                     


Q ss_pred             eeecccchh----ccccccccCCCC-------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEe
Q psy9640          84 TLLSMDSFY----RVHADIIVPRGG-------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        84 ~~i~~d~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                      +++++....    .........|..       ....+.+.+.+++ +........+.      .-.+|||||||||.|||
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL-~~~~~~~la~r------~~~~LSGGerQrv~iAr  151 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL-ELLGLEHLADR------PVDELSGGERQRVLIAR  151 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHH-HHhCcHHHhcC------cccccChhHHHHHHHHH
Confidence            222222100    000000111110       0112223444455 33222222222      23479999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |+..                     ..+.++++..+-+.+.|.+.||.+
T Consensus       152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN  200 (258)
T COG1120         152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN  200 (258)
T ss_pred             HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            9976                     778888888787899999999865

>KOG0055|consensus

Probab=99.92  E-value=4.1e-26  Score=214.25  Aligned_cols=158  Identities=14%  Similarity=0.159  Sum_probs=118.9

Q ss_pred             cccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-
Q psy9640          20 DILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-   97 (199)
Q Consensus        20 ~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-   97 (199)
                      +.....++++||+|+||.+ ..++|++ +||.+++|+.++|+|+|||||||++++|.++++|..+. +..|+....... 
T Consensus       345 ~~~~g~ief~nV~FsYPsRpdv~Il~g-~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~-V~idG~di~~~~~  422 (1228)
T KOG0055|consen  345 SSIKGEIEFRNVCFSYPSRPDVKILKG-VSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE-VLIDGEDIRNLNL  422 (1228)
T ss_pred             cccccceEEEEEEecCCCCCcchhhCC-eEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce-EEEcCccchhcch
Confidence            3445689999999999886 3589999 99999999999999999999999999999999876544 333333211111 


Q ss_pred             --------cc-cCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEe
Q psy9640          98 --------II-VPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILR  152 (199)
Q Consensus        98 --------~~-~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaR  152 (199)
                              +. ++..            ...+.+.+++.++.+......++..+|.+|+|    .|.+|||||||||||||
T Consensus       423 ~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR  502 (1228)
T KOG0055|consen  423 KWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR  502 (1228)
T ss_pred             HHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence                    00 0000            01123457788888777777888999999998    68899999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      |++.                     .++.|-..+.+.  |+|.|+|.--|
T Consensus       503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr--TTivVaHRLSt  550 (1228)
T KOG0055|consen  503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGR--TTIVVAHRLST  550 (1228)
T ss_pred             HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC--eEEEEeeehhh
Confidence            9976                     556666777775  67888885443

>KOG0057|consensus

Probab=99.92  E-value=9.7e-26  Score=196.58  Aligned_cols=154  Identities=17%  Similarity=0.176  Sum_probs=115.3

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--------------------e
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--------------------W   82 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--------------------~   82 (199)
                      .+.|+++||++.|+.. +++|++ +||+|++|+.|||+|+|||||||++|+|.++++..                    .
T Consensus       349 ~~~I~F~dV~f~y~~k-~~iL~g-vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~  426 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGPK-RKVLKG-VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQS  426 (591)
T ss_pred             CCcEEEEeeEEEeCCC-Cceecc-eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhh
Confidence            4469999999999765 469999 99999999999999999999999999999998621                    2


Q ss_pred             eeeecccchhccccccccCCC--CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          83 VTLLSMDSFYRVHADIIVPRG--GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        83 ~~~i~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      +|+++||......  ....+-  .......+++.+..+....++.+..+|.||.|    .|..|||||||||+||||++.
T Consensus       427 Ig~VPQd~~LFnd--TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK  504 (591)
T KOG0057|consen  427 IGVVPQDSVLFND--TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK  504 (591)
T ss_pred             eeEeCCcccccch--hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence            3444444332111  111111  12234568888888666666777889999988    788999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                           +.+.+.+.+-+  -|.|.|.|+.-++
T Consensus       505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~--rTvI~IvH~l~ll  549 (591)
T KOG0057|consen  505 DAPILLLDEATSALDSETEREILDMIMDVMSG--RTVIMIVHRLDLL  549 (591)
T ss_pred             CCCeEEecCcccccchhhHHHHHHHHHHhcCC--CeEEEEEecchhH
Confidence                                 55666665555  4559999987763

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.92  E-value=4.4e-26  Score=206.44  Aligned_cols=154  Identities=16%  Similarity=0.153  Sum_probs=110.9

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------R   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~   93 (199)
                      ..++++||+|+|++..+++|++ +|+++++|+.++|+|+||||||||+++|+|++.|..+.+ ..|+..          .
T Consensus       340 ~~i~~~~vsf~y~~~~~~il~~-i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~~~~  417 (582)
T PRK11176        340 GDIEFRNVTFTYPGKEVPALRN-INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI-LLDGHDLRDYTLASLRN  417 (582)
T ss_pred             CeEEEEEEEEecCCCCCccccC-ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE-EECCEEhhhcCHHHHHh
Confidence            3699999999998655689999 999999999999999999999999999999998754332 222211          0


Q ss_pred             cccccccC-----C--------CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          94 VHADIIVP-----R--------GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 ~~~~~~~~-----~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ...-.++.     .        ...+..+.+++.++++..........+|.|+++    .|.+||||||||++||||++.
T Consensus       418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~  497 (582)
T PRK11176        418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_pred             hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            00000000     0        001123556777777555555556678888887    578899999999999999986


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+..++  -++|.|+|+..+
T Consensus       498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~--~tvI~VtHr~~~  541 (582)
T PRK11176        498 DSPILILDEATSALDTESERAIQAALDELQKN--RTSLVIAHRLST  541 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHhCC--CEEEEEecchHH
Confidence                                 55666665554  456999998764

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.92  E-value=4e-26  Score=210.59  Aligned_cols=154  Identities=12%  Similarity=0.091  Sum_probs=111.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++..+++|+| +||++++|+.++|+|+||||||||+++|+|++.|..+. +..|+....         
T Consensus       462 ~~I~~~~vsf~Y~~~~~~vL~~-i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~-I~idg~~l~~~~~~~lr~  539 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETPALDN-VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS-VLLDGVDIRQIDPADLRR  539 (694)
T ss_pred             ceEEEEEEEEEeCCCCccceee-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHh
Confidence            4699999999997655679999 99999999999999999999999999999999875433 222221100         


Q ss_pred             ccc-cccC----------CC-CCC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HAD-IIVP----------RG-GEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~-~~~~----------~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ... .++.          +- ..+ ..+.+++.++++..........+|.+++|    .|.+||||||||++||||++. 
T Consensus       540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~  619 (694)
T TIGR03375       540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD  619 (694)
T ss_pred             ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            000 0000          00 011 24566777777555555566788999887    678999999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  -++|.|+|+..+
T Consensus       620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~--~T~iiItHrl~~  662 (694)
T TIGR03375       620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAG--KTLVLVTHRTSL  662 (694)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC--CEEEEEecCHHH
Confidence                                55556666654  566999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.92  E-value=3.7e-26  Score=211.26  Aligned_cols=156  Identities=19%  Similarity=0.160  Sum_probs=108.5

Q ss_pred             cCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          24 RGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      ..++++||+|+|++. .+++|+| +||++++|++++|+||||||||||+++|+|++.|..+. +..|+...         
T Consensus       477 ~~I~~~nVsf~Y~~~~~~~vL~~-isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~lr  554 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPDVPVLKG-LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ-VLLDGVPLVQYDHHYLH  554 (711)
T ss_pred             CeEEEEEEEEECCCCCCCccccC-ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE-EEECCEEHHhcCHHHHH
Confidence            469999999999864 3579999 99999999999999999999999999999999876433 32332110         


Q ss_pred             -cccccccCC-----C-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          94 -VHADIIVPR-----G-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 -~~~~~~~~~-----~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ...-..++.     .       .....+.+++.++++..........+|.++++    .|.+||||||||++||||++.
T Consensus       555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~  634 (711)
T TIGR00958       555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR  634 (711)
T ss_pred             hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence             000011110     0       01123456777777555555566678888887    578999999999999999976


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                       .++.+.+..-...-+.|.|+|+..+
T Consensus       635 ~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~  676 (711)
T TIGR00958       635 KPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLST  676 (711)
T ss_pred             CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHH
Confidence                             3333333211224577999998664

>KOG0056|consensus

Probab=99.91  E-value=1.7e-25  Score=193.18  Aligned_cols=161  Identities=17%  Similarity=0.230  Sum_probs=118.1

Q ss_pred             HHhhhhhcccccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe--------
Q psy9640          11 VRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW--------   82 (199)
Q Consensus        11 ~~~~~~~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~--------   82 (199)
                      +..+...-.....+.++++||+|.|... +++|+| |||++.+|+.++++||||+||||++|+|..+++...        
T Consensus       523 vd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~d-isF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq  600 (790)
T KOG0056|consen  523 VDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSD-ISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ  600 (790)
T ss_pred             hcCCCCCCccccCCeEEEEEeEEecCCC-Cceeec-ceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence            4444444445566789999999999654 599999 999999999999999999999999999999987543        


Q ss_pred             -------------eeeecccchhccccccccCCC--CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCC
Q psy9640          83 -------------VTLLSMDSFYRVHADIIVPRG--GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVS  143 (199)
Q Consensus        83 -------------~~~i~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgG  143 (199)
                                   +|++++|.....  +....+-  ..-....++++++.+....+..+...|++|++    .|-.||||
T Consensus       601 dIrnvt~~SLRs~IGVVPQDtvLFN--dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGG  678 (790)
T KOG0056|consen  601 DIRNVTQSSLRSSIGVVPQDTVLFN--DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGG  678 (790)
T ss_pred             hHHHHHHHHHHHhcCcccCcceeec--ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCc
Confidence                         333333322111  1111111  11133457888888777778889999999988    67899999


Q ss_pred             eeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640         144 KICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQT  177 (199)
Q Consensus       144 q~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~  177 (199)
                      |||||||||+.+.                     +...|.+++.+.+ + |+|.|
T Consensus       679 EKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RT-t-IVvAH  731 (790)
T KOG0056|consen  679 EKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRT-T-IVVAH  731 (790)
T ss_pred             chhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCc-e-EEEee
Confidence            9999999999975                     6666778887743 3 45554

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.91  E-value=6.6e-26  Score=205.15  Aligned_cols=154  Identities=10%  Similarity=0.096  Sum_probs=110.1

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++..+++|+| +||++++|++++|+||||||||||+++|+|.+.|..+. +..|+....         
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~-i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~-I~i~g~~i~~~~~~~~r~  414 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKG-LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE-ILLNGQPIADYSEAALRQ  414 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceec-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEhhhCCHHHHHh
Confidence            4699999999997654579999 99999999999999999999999999999998775433 222221100         


Q ss_pred             ccc-cccCC-----C-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HAD-IIVPR-----G-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~-~~~~~-----~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ... ...+.     .       .....+.+++.++++.......... |.|+++    .|.+||||||||++||||++. 
T Consensus       415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~  493 (574)
T PRK11160        415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHD  493 (574)
T ss_pred             heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            000 00000     0       0112345667777755455555667 999998    688999999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                          +.+.+.+..++  -++|.|+|+..+.
T Consensus       494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~--~tviiitHr~~~~  537 (574)
T PRK11160        494 APLLLLDEPTEGLDAETERQILELLAEHAQN--KTVLMITHRLTGL  537 (574)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCC--CEEEEEecChhHH
Confidence                                55666666554  5669999987653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.91  E-value=9.4e-26  Score=203.84  Aligned_cols=154  Identities=19%  Similarity=0.204  Sum_probs=112.5

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ..+++++||+|.|++. +++++| +||++++|+++||+|||||||||++++|++++++..+.+.. |+....        
T Consensus       326 ~~~I~f~~vsf~y~~~-~~vl~~-is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr  402 (567)
T COG1132         326 IGSIEFENVSFSYPGK-KPVLKD-ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLR  402 (567)
T ss_pred             CCeEEEEEEEEEcCCC-CccccC-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHH
Confidence            3459999999999852 489999 99999999999999999999999999999999885444332 432111        


Q ss_pred             --ccccccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 --HADIIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 --~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                        ..-.+++..            .....+.+++.++++..........+|.++++    .|..||||||||++||||++.
T Consensus       403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~  482 (567)
T COG1132         403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR  482 (567)
T ss_pred             HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence              010011100            01124557888888777667778888999888    578999999999999999986


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+...+ + +++.|+|...+
T Consensus       483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~-r-T~iiIaHRlst  526 (567)
T COG1132         483 NPPILILDEATSALDTETEALIQDALKKLLKG-R-TTLIIAHRLST  526 (567)
T ss_pred             CCCEEEEeccccccCHHhHHHHHHHHHHHhcC-C-EEEEEeccHhH
Confidence                                 45555555555 3 55668886543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.91  E-value=1.5e-25  Score=200.96  Aligned_cols=154  Identities=12%  Similarity=0.130  Sum_probs=110.2

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++..++++++ +|+++++|++++|+|+||||||||+++|+|++.|..+.+ ..|+....         
T Consensus       319 ~~i~~~~v~f~y~~~~~~il~~-i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I-~~~g~~i~~~~~~~lr~  396 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRRAPALRP-VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI-AVNGVPLADADADSWRD  396 (529)
T ss_pred             CeEEEEEEEEECCCCCcccccc-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEehhhCCHHHHHh
Confidence            3699999999998754579999 999999999999999999999999999999988765333 22221100         


Q ss_pred             ccc-cccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HAD-IIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~-~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ... ..+...            .....+.+++.++++..........+|.++++    .|.+||||||||++||||++. 
T Consensus       397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~  476 (529)
T TIGR02857       397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD  476 (529)
T ss_pred             heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence            000 001000            01122345666777555555667788888888    578999999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  .++|.|+|+..+
T Consensus       477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~--~t~i~itH~~~~  519 (529)
T TIGR02857       477 APLLLLDEPTAHLDAETEALVTEALRALAQG--RTVLLVTHRLAL  519 (529)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHhcCC--CEEEEEecCHHH
Confidence                                55556555544  567999998754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.91  E-value=2.5e-25  Score=200.95  Aligned_cols=154  Identities=17%  Similarity=0.157  Sum_probs=109.4

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----------hc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----------YR   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----------~~   93 (199)
                      ..++++||+|+|++..+++|++ +|+++++|++++|+|+||||||||+++|+|.+.+..+.+. .++.          +.
T Consensus       329 ~~i~~~~v~f~y~~~~~~il~~-inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~-i~g~~i~~~~~~~~~~  406 (571)
T TIGR02203       329 GDVEFRNVTFRYPGRDRPALDS-ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL-LDGHDLADYTLASLRR  406 (571)
T ss_pred             CeEEEEEEEEEcCCCCCccccC-eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE-ECCEeHHhcCHHHHHh
Confidence            4699999999997654579999 9999999999999999999999999999999987644332 2211          00


Q ss_pred             cccccccC-----CC------CCC--CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          94 VHADIIVP-----RG------GEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 ~~~~~~~~-----~~------~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ...-.++.     ..      ..+  ..+.+++.++++..........+|.++++    .|..||||||||++||||++.
T Consensus       407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~  486 (571)
T TIGR02203       407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK  486 (571)
T ss_pred             hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            00000000     00      011  24456777777554545556678888887    577899999999999999976


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+..++  -++|.|+|+...
T Consensus       487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~--~tiIiitH~~~~  530 (571)
T TIGR02203       487 DAPILILDEATSALDNESERLVQAALERLMQG--RTTLVIAHRLST  530 (571)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhCC--CEEEEEehhhHH
Confidence                                 55555555554  466999998763

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.9e-25  Score=177.64  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=98.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-----------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-----------R   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-----------~   93 (199)
                      -|+++||++.|++. +.+|++ |||+|++||+|+|+|+||||||||+|+|.++.++..+.+...+...           +
T Consensus         3 ~i~~~nl~k~yp~~-~~aL~~-Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           3 MIEVKNLSKTYPGG-HQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             eEEEeeeeeecCCC-ceeeee-EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            47899999999754 589999 9999999999999999999999999999997776654333222110           0


Q ss_pred             cccccccCC-----------------CCCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeee
Q psy9640          94 VHADIIVPR-----------------GGEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGV  148 (199)
Q Consensus        94 ~~~~~~~~~-----------------~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrv  148 (199)
                      ...++.+..                 ..+.        -...++-..++ ..+.   .+.+.........+|||||+|||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al-~aLe---rvgi~~~A~qra~~LSGGQQQRV  156 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQAL-DALE---RVGILDKAYQRASTLSGGQQQRV  156 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHH-HHHH---HcCcHHHHHHHhccCCcchhHHH
Confidence            111111110                 0000        11112222222 2222   12222222234568999999999


Q ss_pred             eEEeccch---------------------hHHHHHhhccccceeEEEEEeC
Q psy9640         149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTN  178 (199)
Q Consensus       149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~  178 (199)
                      +||||+..                     .++.+.+....-++|+|+--|+
T Consensus       157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~  207 (258)
T COG3638         157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ  207 (258)
T ss_pred             HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence            99999975                     7788888888888988888774

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.91  E-value=3.1e-25  Score=217.01  Aligned_cols=157  Identities=16%  Similarity=0.149  Sum_probs=113.7

Q ss_pred             cCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---------------------
Q psy9640          24 RGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---------------------   81 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---------------------   81 (199)
                      ..|+++||+|+|++. ..++|++ +||++++|+.+||+|+|||||||++++|++++.|.                     
T Consensus      1164 g~I~f~nVsF~Y~~~~~~~vL~~-lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265       1164 GKIEIMDVNFRYISRPNVPIYKD-LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred             ceEEEEEEEEECCCCCCCccccC-eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence            469999999999753 3479999 99999999999999999999999999999999872                     


Q ss_pred             --------------------------------eeeeecccchhcccc---------c-cccCCC------------CCCC
Q psy9640          82 --------------------------------WVTLLSMDSFYRVHA---------D-IIVPRG------------GENC  107 (199)
Q Consensus        82 --------------------------------~~~~i~~d~~~~~~~---------~-~~~~~~------------~~~~  107 (199)
                                                      ..|.+..|+......         . +.+...            ....
T Consensus      1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265       1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred             ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence                                            344454444321110         0 111100            0112


Q ss_pred             chHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------------hHHHHH
Q psy9640         108 VAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------------MEQAVH  162 (199)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~  162 (199)
                      .+.+++.++++......++..+|.||+|    .|.+||||||||||||||++.                     +.+.+.
T Consensus      1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265       1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred             CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence            4557788888666666778899999998    688999999999999999986                     444454


Q ss_pred             hhccccceeEEEEEeCCCC
Q psy9640         163 DVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       163 ~~~p~~~~~~~~~~~~~~~  181 (199)
                      +......-|+|.|+|...+
T Consensus      1403 ~~~~~~~~TvIiIaHRlst 1421 (1466)
T PTZ00265       1403 DIKDKADKTIITIAHRIAS 1421 (1466)
T ss_pred             HHhccCCCEEEEEechHHH
Confidence            4421124577999996543

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.90  E-value=2.6e-25  Score=201.80  Aligned_cols=153  Identities=16%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++. +++|+| +||++++|++++|+|+||||||||+++|+|++.|..+. +..|+....         
T Consensus       339 ~~i~~~~v~f~y~~~-~~il~~-i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~-I~idg~~i~~~~~~~l~~  415 (592)
T PRK10790        339 GRIDIDNVSFAYRDD-NLVLQN-INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE-IRLDGRPLSSLSHSVLRQ  415 (592)
T ss_pred             CeEEEEEEEEEeCCC-Cceeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce-EEECCEEhhhCCHHHHHh
Confidence            469999999999753 479999 99999999999999999999999999999999876433 333322110         


Q ss_pred             -ccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 -HADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 -~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                       ..-.++...           ..++.+.+++.++++..........+|.|+++    .|.+||||||||++||||++.  
T Consensus       416 ~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~  495 (592)
T PRK10790        416 GVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP  495 (592)
T ss_pred             heEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence             000111100           01133456777777555555566678988887    678999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+..++  -++|.|+|+..+
T Consensus       496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~--~tvIivtHr~~~  537 (592)
T PRK10790        496 QILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLST  537 (592)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHhCC--CEEEEEecchHH
Confidence                               55556665554  567999997754

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=8.9e-25  Score=177.55  Aligned_cols=140  Identities=14%  Similarity=0.116  Sum_probs=103.3

Q ss_pred             Ccccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc
Q psy9640          25 GRDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~   97 (199)
                      -++++|+++.|+..       ...++++ |||+|++|+++||+|+|||||||+.|+|++++.|..+.++..+.-..... 
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~-Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-   81 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDG-VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-   81 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecc-eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence            47899999999643       1479999 99999999999999999999999999999999887665544332111000 


Q ss_pred             cccCCCCCCCchHHHHHHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch--------------------
Q psy9640          98 IIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET--------------------  156 (199)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~--------------------  156 (199)
                              .....+.+.+.+    .   .+.++. .+...+++|||||+|||+||||++.                    
T Consensus        82 --------~~~~~~~v~elL----~---~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqa  146 (268)
T COG4608          82 --------KEERRERVLELL----E---KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQA  146 (268)
T ss_pred             --------hhHHHHHHHHHH----H---HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHH
Confidence                    001112233333    1   233443 3455788999999999999999965                    


Q ss_pred             -hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                       +...+.++....+++.++|+||=+.
T Consensus       147 qIlnLL~dlq~~~~lt~lFIsHDL~v  172 (268)
T COG4608         147 QILNLLKDLQEELGLTYLFISHDLSV  172 (268)
T ss_pred             HHHHHHHHHHHHhCCeEEEEEEEHHh
Confidence             6777888888999999999998764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.90  E-value=3.6e-25  Score=204.70  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=107.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++. +++|+| +|+++++|+.++|+|+||||||||+++|+|++.|..+. +..|+....         
T Consensus       472 ~~I~~~~vsf~y~~~-~~iL~~-isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~-I~idg~~i~~~~~~~lr~  548 (708)
T TIGR01193       472 GDIVINDVSYSYGYG-SNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE-ILLNGFSLKDIDRHTLRQ  548 (708)
T ss_pred             CcEEEEEEEEEcCCC-Ccceec-eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE-EEECCEEHHHcCHHHHHH
Confidence            469999999999743 479999 99999999999999999999999999999998876433 222221100         


Q ss_pred             ccc-cccC----------C--CC-CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 HAD-IIVP----------R--GG-ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 ~~~-~~~~----------~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ... .++.          +  .. ....+.+++.++++..........+|.++++    .|..||||||||++||||++.
T Consensus       549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~  628 (708)
T TIGR01193       549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT  628 (708)
T ss_pred             heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence            000 0000          0  01 1123456677777555445556678998887    578999999999999999976


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+ ++  .-+.|.|+|+..+
T Consensus       629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~--~~T~IiitHr~~~  671 (708)
T TIGR01193       629 DSKVLILDESTSNLDTITEKKIVNNLLN-LQ--DKTIIFVAHRLSV  671 (708)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHH-hc--CCEEEEEecchHH
Confidence                                 4444544 23  3567999997764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.90  E-value=3.9e-25  Score=191.40  Aligned_cols=161  Identities=16%  Similarity=0.108  Sum_probs=118.1

Q ss_pred             cccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc--
Q psy9640          20 DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD--   97 (199)
Q Consensus        20 ~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~--   97 (199)
                      ..++..+.++++++.=|+..++++++ +||++.+|+.++|+||||||||||+|.|.|.+.|.. |.+..|+....+-+  
T Consensus       329 P~P~g~L~Ve~l~~~PPg~~~pil~~-isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~-G~VRLDga~l~qWd~e  406 (580)
T COG4618         329 PAPQGALSVERLTAAPPGQKKPILKG-ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS-GSVRLDGADLRQWDRE  406 (580)
T ss_pred             CCCCceeeEeeeeecCCCCCCcceec-ceeEecCCceEEEECCCCccHHHHHHHHHcccccCC-CcEEecchhhhcCCHH
Confidence            34456799999999778877899999 999999999999999999999999999999887643 33444443211100  


Q ss_pred             --------ccc-----C-----C--CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEec
Q psy9640          98 --------IIV-----P-----R--GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRA  153 (199)
Q Consensus        98 --------~~~-----~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA  153 (199)
                              +++     +     +  ...++.+.+.+.++.+...-++.+..+|.||+|    .|..|||||||||++|||
T Consensus       407 ~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA  486 (580)
T COG4618         407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA  486 (580)
T ss_pred             HhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence                    000     0     0  012245567788777555556678899999999    688999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKATDE  183 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~~  183 (199)
                      +..                     ....+ .-....+.++|+|+|-+..+.
T Consensus       487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai-~~~k~rG~~vvviaHRPs~L~  536 (580)
T COG4618         487 LYGDPFLVVLDEPNSNLDSEGEAALAAAI-LAAKARGGTVVVIAHRPSALA  536 (580)
T ss_pred             HcCCCcEEEecCCCCCcchhHHHHHHHHH-HHHHHcCCEEEEEecCHHHHh
Confidence            965                     22222 233466899999999877543

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.90  E-value=4.1e-25  Score=203.94  Aligned_cols=154  Identities=17%  Similarity=0.219  Sum_probs=109.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH--------   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~--------   95 (199)
                      ..++++||+|+|++..+++|++ +||++++|+.++|+|+||||||||+++|+|.+.|..+. +..|+.....        
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~-i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~-I~idg~~i~~~~~~~~r~  531 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSN-LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ-VLVDGVDLAIADPAWLRR  531 (694)
T ss_pred             CeEEEEEEEEEcCCCCcccccc-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEehhhCCHHHHHH
Confidence            4699999999997654579999 99999999999999999999999999999998776433 3333321100        


Q ss_pred             -cc-cccCCC----------C-CC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          96 -AD-IIVPRG----------G-EN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        96 -~~-~~~~~~----------~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                       .. ......          . .+ ..+.+++.++++..........+|.++++    .|.+|||||+||++||||++. 
T Consensus       532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~  611 (694)
T TIGR01846       532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN  611 (694)
T ss_pred             hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence             00 000000          0 11 23456677777544444556678888887    578999999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  .++|.++|+..+
T Consensus       612 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~itH~~~~  654 (694)
T TIGR01846       612 PRILIFDEATSALDYESEALIMRNMREICRG--RTVIIIAHRLST  654 (694)
T ss_pred             CCEEEEECCCcCCCHHHHHHHHHHHHHHhCC--CEEEEEeCChHH
Confidence                                44555555444  567999998765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.90  E-value=7.1e-25  Score=198.91  Aligned_cols=153  Identities=16%  Similarity=0.186  Sum_probs=106.8

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----------hc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----------YR   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----------~~   93 (199)
                      ..++++||+|.|++. +++|++ +|+++++|++++|+|+||||||||+++|+|++.|..+.+ ..|+.          +.
T Consensus       333 ~~I~~~~vsf~y~~~-~~iL~~-inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I-~i~g~~i~~~~~~~~r~  409 (588)
T PRK13657        333 GAVEFDDVSFSYDNS-RQGVED-VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI-LIDGTDIRTVTRASLRR  409 (588)
T ss_pred             CeEEEEEEEEEeCCC-Cceecc-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE-EECCEEhhhCCHHHHHh
Confidence            359999999999753 479999 999999999999999999999999999999998754332 22221          00


Q ss_pred             cccccccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          94 VHADIIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        94 ~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ...-.++...            .....+.+++..+++..........+|.++++    .|..|||||+||++||||++. 
T Consensus       410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~  489 (588)
T PRK13657        410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD  489 (588)
T ss_pred             heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            0000011100            01122345666666444444555568888887    577899999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  -+.|.|+|+...
T Consensus       490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~--~tvIiitHr~~~  532 (588)
T PRK13657        490 PPILILDEATSALDVETEAKVKAALDELMKG--RTTFIIAHRLST  532 (588)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhcC--CEEEEEEecHHH
Confidence                                55555555444  566999998753

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.9e-24  Score=190.27  Aligned_cols=151  Identities=15%  Similarity=0.148  Sum_probs=109.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~   94 (199)
                      ++.++|+++.|++.. +++++ +++++++|+.++|+|+||||||||++.|+|++.+.. |.+..++...          .
T Consensus       320 ei~~~~l~~~y~~g~-~~l~~-l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~-G~I~vng~~l~~l~~~~~~k~  396 (559)
T COG4988         320 EISLENLSFRYPDGK-PALSD-LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRKQ  396 (559)
T ss_pred             eeeecceEEecCCCC-cccCC-ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC-ceEEECCccccccCHHHHHhH
Confidence            455669999998763 89999 999999999999999999999999999999987643 3344333211          1


Q ss_pred             cccccc-----CCC-C-----CCC-chHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 HADIIV-----PRG-G-----ENC-VAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~~-----~~~-~-----~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .....+     ... .     .++ .+.+++.+++......++... |.|+++    .|..|||||+|||++|||++.  
T Consensus       397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~  475 (559)
T COG4988         397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA  475 (559)
T ss_pred             eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence            111111     110 0     112 345777778866655555445 888887    788999999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+...+.  +++.|+|+.+.
T Consensus       476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~k--tvl~itHrl~~  517 (559)
T COG4988         476 SLLLLDEPTAHLDAETEQIILQALQELAKQK--TVLVITHRLED  517 (559)
T ss_pred             CEEEecCCccCCCHhHHHHHHHHHHHHHhCC--eEEEEEcChHH
Confidence                               666777777774  45999997653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=1.4e-24  Score=173.14  Aligned_cols=156  Identities=15%  Similarity=0.145  Sum_probs=109.8

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      +.-|++++|+++|.++  .++++ ++|+|++|++++|+|+||||||||+|+|.|++.|..+.+.....-..         
T Consensus         6 ~~~I~vr~v~~~fG~~--~Ild~-v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~   82 (263)
T COG1127           6 EPLIEVRGVTKSFGDR--VILDG-VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE   82 (263)
T ss_pred             cceEEEeeeeeecCCE--EEecC-ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence            4469999999999876  89999 99999999999999999999999999999999887544432211100         


Q ss_pred             --cccccccCCC--------CCC--------CchHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeeeeeeEEecc
Q psy9640          94 --VHADIIVPRG--------GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        94 --~~~~~~~~~~--------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                        ...++.+..+        .+|        ..-.+.+.+.+  +..+-..+.++.. .+..|.+|||||+.|+|||||+
T Consensus        83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l--v~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi  160 (263)
T COG1127          83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL--VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI  160 (263)
T ss_pred             HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH--HHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH
Confidence              0011111111        111        11112222222  1111234566654 5667889999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATDE  183 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~~  183 (199)
                      ..                     +.+++.++...++.|++.|+||-.++-
T Consensus       161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~  210 (263)
T COG1127         161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL  210 (263)
T ss_pred             hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHH
Confidence            64                     888888999999999999999877643

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.89  E-value=1.9e-24  Score=195.44  Aligned_cols=154  Identities=16%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             cCcccccceeeccccc-cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------
Q psy9640          24 RGRDLEGVIKQYVNMV-KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------   92 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~-~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------   92 (199)
                      ..++++||+|+|++.. +++|++ +||++++|+.++|+|+||||||||+++|+|++.|..+.+ ..|+..          
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~-inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I-~i~g~~i~~~~~~~~~  413 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDG-LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI-LLDGVDLRQLDPAELR  413 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccc-eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE-EECCEEHHhcCHHHHH
Confidence            3599999999997532 579999 999999999999999999999999999999988754332 222210          


Q ss_pred             ccccccccCC-----C------CCCC-chHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          93 RVHADIIVPR-----G------GENC-VAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        93 ~~~~~~~~~~-----~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ....-.++..     .      ..++ .+.+++.++++..........+|.++++    .|..|||||+||++||||++.
T Consensus       414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~  493 (576)
T TIGR02204       414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK  493 (576)
T ss_pred             HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            0000000000     0      0111 2345666666443333344566777665    577899999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+..++  .+.|.|+|+...
T Consensus       494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~--~t~IiitH~~~~  537 (576)
T TIGR02204       494 DAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAHRLAT  537 (576)
T ss_pred             CCCeEEEeCcccccCHHHHHHHHHHHHHHhCC--CEEEEEecchHH
Confidence                                 55566666654  567999998754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.89  E-value=2.1e-24  Score=212.23  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=112.4

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      +.|+++||+|+|++..+++|+| +||+|++|+.+||+|+||||||||+++|.+++.+..+. +..|+....         
T Consensus      1233 g~I~f~nVsf~Y~~~~~~vL~~-isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~-I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGLPPVLHG-LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR-IMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred             CcEEEEEEEEEECCCCCccccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce-EEECCEEhhhCCHHHHHh
Confidence            4699999999996554589999 99999999999999999999999999999998775432 333322110         


Q ss_pred             -ccccccCC----------C-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 -HADIIVPR----------G-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 -~~~~~~~~----------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                       ..-.+++.          - ..+..+.++++++++..........+|.++++    .|.+||||||||++||||++.  
T Consensus      1311 ~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232       1311 VLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred             hcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence             00001100          0 01234567788888655555566678888887    578999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+.+++.  |+|.|+|.-.+
T Consensus      1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~--TvI~IAHRl~t 1432 (1495)
T PLN03232       1391 KILVLDEATASVDVRTDSLIQRTIREEFKSC--TMLVIAHRLNT 1432 (1495)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHcCCC--EEEEEeCCHHH
Confidence                               666677777764  45999997654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.89  E-value=2.7e-24  Score=212.10  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=113.4

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      +.|+++||+|+|++..+++|+| +||+|++|+.+||+|+||||||||+++|.+++.+..+ .+..|+....         
T Consensus      1236 g~I~f~nVsf~Y~~~~~~VL~~-is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G-~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPELPPVLHG-LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG-RILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred             CcEEEEEEEEEeCCCCCceecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCEecccCCHHHHHh
Confidence            4699999999997654579999 9999999999999999999999999999999877543 2333332111         


Q ss_pred             -ccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 -HADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 -~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                       ..-.++...           ..++.+.++++++++.......+..+|.++++    .|.+||||||||++||||++.  
T Consensus      1314 ~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130       1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred             ccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence             000011100           01234567788888665555666778888888    578999999999999999986  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+.+++.  |+|.|+|.-.+
T Consensus      1394 ~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~--TvI~IAHRL~t 1435 (1622)
T PLN03130       1394 KILVLDEATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNT 1435 (1622)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEeCChHH
Confidence                               666677777654  55999996664

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.89  E-value=3.8e-24  Score=188.62  Aligned_cols=155  Identities=17%  Similarity=0.136  Sum_probs=105.2

Q ss_pred             cCcccccceeeccc---------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc
Q psy9640          24 RGRDLEGVIKQYVN---------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~---------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~   94 (199)
                      .-++++|+++.|..         ....++++ |||++.+||++||+|+||||||||+|.|+|+..|. .|.+..++....
T Consensus       279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~-VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~~~  356 (539)
T COG1123         279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDD-VSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLD  356 (539)
T ss_pred             ceeEeeeeeeeeccccccccccccceeeeee-eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcccc
Confidence            34779999999973         23578999 99999999999999999999999999999999884 444443332110


Q ss_pred             cc-------------ccccCCCCCCCc-hH-HHHHHHHH-----------H-HHhcCceeecCC-ceeeecceecCCeee
Q psy9640          95 HA-------------DIIVPRGGENCV-AI-DLIVQHIH-----------S-QLQAGVSVDMPQ-GYTYEGKRCAVSKIC  146 (199)
Q Consensus        95 ~~-------------~~~~~~~~~~~~-~~-~~~~~~l~-----------~-~~~~~~~~~~~~-~~~~~g~~lSgGq~Q  146 (199)
                      ..             -++.+....|+. +. +.+.+.+.           + ....-..+.++. .++..+.+|||||||
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence            00             001111111211 00 11111110           0 000012345554 356689999999999


Q ss_pred             eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||||||+..                     ..++++++..+.+++.|+|+||=.
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~  491 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA  491 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence            9999999965                     888999999999999999999865

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.89  E-value=5e-24  Score=192.75  Aligned_cols=154  Identities=17%  Similarity=0.161  Sum_probs=106.2

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~   94 (199)
                      ..++++|++|+|+...+++|++ +|+++++|++++|+||||||||||+++|+|++.|..+.+ ..++...         .
T Consensus       312 ~~I~~~~v~~~y~~~~~~~l~~-i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i-~~~g~~~~~~~~~~~~~  389 (569)
T PRK10789        312 GELDVNIRQFTYPQTDHPALEN-VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI-RFHDIPLTKLQLDSWRS  389 (569)
T ss_pred             CcEEEEEEEEECCCCCCccccC-eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE-EECCEEHhhCCHHHHHh
Confidence            4589999999997644579999 999999999999999999999999999999987754432 2222110         0


Q ss_pred             cccc-ccCC-----C-------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HADI-IVPR-----G-------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~-~~~~-----~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      .... ....     .       .....+.+.+..+++..........+|.++++    .|.+|||||+||++||||++. 
T Consensus       390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~  469 (569)
T PRK10789        390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN  469 (569)
T ss_pred             heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            0000 0000     0       00122344555555333333445678888776    577899999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  .+.|.++|+..+
T Consensus       470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~--~tii~itH~~~~  512 (569)
T PRK10789        470 AEILILDDALSAVDGRTEHQILHNLRQWGEG--RTVIISAHRLSA  512 (569)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHhCC--CEEEEEecchhH
Confidence                                55556665544  567999998754

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.3e-23  Score=163.21  Aligned_cols=151  Identities=14%  Similarity=0.095  Sum_probs=100.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc----ccccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH----ADIIV  100 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~----~~~~~  100 (199)
                      .+.+++++.+|++..+.++++ +|++|.+|+++++.||||||||||+++++|+..|..+. +..++....-    ....+
T Consensus         3 ~l~~~~~sl~y~g~~~~~le~-vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~-i~l~~r~i~gPgaergvVF   80 (259)
T COG4525           3 MLNVSHLSLSYEGKPRSALED-VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS-IQLNGRRIEGPGAERGVVF   80 (259)
T ss_pred             eeehhheEEecCCcchhhhhc-cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccce-EEECCEeccCCCccceeEe
Confidence            367789999998876779999 99999999999999999999999999999988775432 2222211000    00111


Q ss_pred             CCC--------CCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640         101 PRG--------GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus       101 ~~~--------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                      .+.        ..|        .....+-.+...+.+   ..+.+...-+....+||||||||+.||||+..        
T Consensus        81 Q~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l---~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD  157 (259)
T COG4525          81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQML---ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD  157 (259)
T ss_pred             ccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence            111        011        000001111111111   12333332233567999999999999999965        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                   |.+.|.++-...+-++++||||=+
T Consensus       158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie  194 (259)
T COG4525         158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE  194 (259)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence                         888889999999999999999643

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=7.9e-24  Score=166.21  Aligned_cols=152  Identities=12%  Similarity=0.104  Sum_probs=96.3

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe----eeeecccchh--c----
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW----VTLLSMDSFY--R----   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~----~~~i~~d~~~--~----   93 (199)
                      ..++++|+++.|...  .+|++ |++.|+++.+.|++|||||||||++|++-.+.....    -|.+..++..  .    
T Consensus         6 ~~~~~~~l~~yYg~~--~aL~~-i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d   82 (253)
T COG1117           6 PAIEVRDLNLYYGDK--HALKD-INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD   82 (253)
T ss_pred             ceeEecceeEEECch--hhhcc-CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence            358899999999866  89999 999999999999999999999999999977654321    2333333211  1    


Q ss_pred             -----cccccccCCCC------CC---------CchHHHHHHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEe
Q psy9640          94 -----VHADIIVPRGG------EN---------CVAIDLIVQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        94 -----~~~~~~~~~~~------~~---------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                           ...++.+.+..      ++         ......+.+.++..+...... +.+..++..+..|||||+||++|||
T Consensus        83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR  162 (253)
T COG1117          83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR  162 (253)
T ss_pred             HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence                 11112221111      00         000122222222222221111 2333455577789999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |+..                     +++++.++-.+  .+.|.|||+-+
T Consensus       163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~--yTIviVTHnmq  209 (253)
T COG1117         163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK--YTIVIVTHNMQ  209 (253)
T ss_pred             HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhc--cEEEEEeCCHH
Confidence            9964                     67777777755  55599999644

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.88  E-value=2e-23  Score=160.47  Aligned_cols=143  Identities=13%  Similarity=0.117  Sum_probs=96.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh--------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY--------RVHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~--------~~~~~   97 (199)
                      +.+++|.+.|...  +.  . .+++++.|++++|+||||||||||+++|+|+..|..+.+. .++..        +....
T Consensus         2 l~L~~V~~~y~~~--~~--~-fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~-i~g~d~t~~~P~~RPVSm   75 (231)
T COG3840           2 LALDDVRFSYGHL--PM--R-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL-INGVDHTASPPAERPVSM   75 (231)
T ss_pred             ccccceEEeeCcc--eE--E-EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEE-EcCeecCcCCcccCChhh
Confidence            5688999999754  21  3 5789999999999999999999999999999887655443 22211        11000


Q ss_pred             cccCCCC-------------------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          98 IIVPRGG-------------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        98 ~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      +..++..                   .+..+.+.+..++...       .+....+.-|.+||||||||||+||+++.  
T Consensus        76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~v-------Gl~~~~~RLP~~LSGGqRQRvALARclvR~~  148 (231)
T COG3840          76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQV-------GLAGFLKRLPGELSGGQRQRVALARCLVREQ  148 (231)
T ss_pred             hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHh-------ChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence            0001100                   1111223333333222       22222333466899999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         |..++.++|-+.+.|.+.|+|+++.
T Consensus       149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D  192 (231)
T COG3840         149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED  192 (231)
T ss_pred             CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence                               8889999999999999999997663

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.88  E-value=6.6e-24  Score=208.98  Aligned_cols=155  Identities=12%  Similarity=0.072  Sum_probs=114.0

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------   95 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------   95 (199)
                      .+.|+++||+++|++...++|+| +||++++|+.+||+|+||||||||+++|.+++.+..+ .+..|+.....       
T Consensus      1282 ~g~I~f~nVsf~Y~~~~~~vL~~-is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G-~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957      1282 RGRVEFRNYCLRYREDLDLVLRH-INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG-EIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred             CCcEEEEEEEEEeCCCCcccccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-eEEECCEEccccCHHHHH
Confidence            35699999999997654579999 9999999999999999999999999999998876532 23333321110       


Q ss_pred             ---cccccC----------CC-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          96 ---ADIIVP----------RG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        96 ---~~~~~~----------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                         .-.+++          +. ..+..+.++++++++..........+|.++++    .|.+||||||||++||||++. 
T Consensus      1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957      1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred             hcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence               000110          00 01234567788888655555666778888887    578999999999999999986 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+.+++.  |+|.|+|.-.+
T Consensus      1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~--TvI~IAHRl~t 1482 (1522)
T TIGR00957      1440 TKILVLDEATAAVDLETDNLIQSTIRTQFEDC--TVLTIAHRLNT 1482 (1522)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHcCCC--EEEEEecCHHH
Confidence                                667777777764  45999997665

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.88  E-value=1e-23  Score=189.84  Aligned_cols=155  Identities=17%  Similarity=0.131  Sum_probs=105.3

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++|++|+|++..++++++ +|+++++|++++|+|+||||||||+++|+|.+.|..+.+ ..++....         
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~-~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~i~~~~~~~~~~  392 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRG-ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV-RLDGADLKQWDRETFGK  392 (544)
T ss_pred             CeEEEEEEEEEcCCCCcccccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEehhhCCHHHHhh
Confidence            4699999999997654589999 999999999999999999999999999999987654332 22221100         


Q ss_pred             ccc-cccCC-----C------CCC-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HAD-IIVPR-----G------GEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~-~~~~~-----~------~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ... .+...     .      ..+ ..+.+++.++++..........+|.++++    .|.+|||||+||++||||++. 
T Consensus       393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~  472 (544)
T TIGR01842       393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD  472 (544)
T ss_pred             heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence            000 00000     0      011 13345566665433333445567777776    578999999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+... -+.+.|.++|+...
T Consensus       473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~  516 (544)
T TIGR01842       473 PKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSL  516 (544)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH
Confidence                                4444444432 14577999998753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PTZ00243 ABC transporter; Provisional

Probab=99.88  E-value=7.8e-24  Score=208.47  Aligned_cols=155  Identities=14%  Similarity=0.039  Sum_probs=112.3

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      +.|+++||+|+|++..+++|+| +||+|++|+.|||+|+||||||||+++|++++.+..+ .|..|+....         
T Consensus      1307 G~I~f~nVsf~Y~~~~~~vL~~-vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243       1307 GSLVFEGVQMRYREGLPLVLRG-VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred             CeEEEEEEEEEeCCCCCceeec-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHh
Confidence            4699999999997654579999 9999999999999999999999999999999876542 2333332110         


Q ss_pred             -ccccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 -HADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 -~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                       ..-.++...           ..+..+.++++++++..........+|.++++    .|.+||||||||++||||++.  
T Consensus      1385 ~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243       1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred             cceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence             000011000           01234567888888666555666778998887    578999999999999999984  


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                          +.+.+.+.+.+  -|+|.|+|.-.++
T Consensus      1465 ~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~--~TvI~IAHRl~ti 1508 (1560)
T PTZ00243       1465 SGFILMDEATANIDPALDRQIQATVMSAFSA--YTVITIAHRLHTV 1508 (1560)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHCCC--CEEEEEeccHHHH
Confidence                                34455555555  4569999976653

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=3e-23  Score=158.15  Aligned_cols=150  Identities=13%  Similarity=0.044  Sum_probs=99.3

Q ss_pred             Ccccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          25 GRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      -|++++++++...  ...++|++ |++.+++|+.++|+||||||||||+-.++|+-.+..+ .+...+...         
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~-V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~rA   83 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKG-VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDARA   83 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeec-ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHHHH
Confidence            5788999998754  34579999 9999999999999999999999999888887765533 232211100         


Q ss_pred             ----cccccccC--------CCCCC---------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEe
Q psy9640          94 ----VHADIIVP--------RGGEN---------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        94 ----~~~~~~~~--------~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                          ....+.+.        ...+|         +...+.... ..+.+   ..+.+...+...|.+||||++|||||||
T Consensus        84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~-A~~lL---~~vGLg~Rl~HyP~qLSGGEQQRVAiAR  159 (228)
T COG4181          84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG-AKALL---EAVGLGKRLTHYPAQLSGGEQQRVALAR  159 (228)
T ss_pred             HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH-HHHHH---HHhCcccccccCccccCchHHHHHHHHH
Confidence                00000000        00011         111111111 11111   1234444445568899999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |+..                     +-+++-.+..+.+.+.|+||||+.
T Consensus       160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~  208 (228)
T COG4181         160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ  208 (228)
T ss_pred             HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence            9976                     667778888899999999999986

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.87  E-value=1.4e-23  Score=190.40  Aligned_cols=153  Identities=14%  Similarity=0.179  Sum_probs=103.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++. .+++++ +|+++++|++++|+|+||||||||+++|+|.+.+..+.+ ..|+....         
T Consensus       333 ~~i~~~~v~~~y~~~-~~~l~~-i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~~~~~~~~~~~~  409 (585)
T TIGR01192       333 GAVEFRHITFEFANS-SQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRK  409 (585)
T ss_pred             CeEEEEEEEEECCCC-Cccccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE-EECCEEhhhCCHHHHHh
Confidence            359999999999754 368999 999999999999999999999999999999987754433 22221100         


Q ss_pred             ccc-cccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HAD-IIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~-~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ... ......            .....+.+++.++++..........+|.++++    .|..|||||+||++||||++. 
T Consensus       410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            000 000000            00112334555555333333344567777665    577899999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+..++  .++|.++|+..+
T Consensus       490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~--~tvI~isH~~~~  532 (585)
T TIGR01192       490 APILVLDEATSALDVETEARVKNAIDALRKN--RTTFIIAHRLST  532 (585)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhCC--CEEEEEEcChHH
Confidence                                55555555554  566999998754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=8.3e-23  Score=165.41  Aligned_cols=151  Identities=13%  Similarity=0.103  Sum_probs=102.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------   94 (199)
                      -++++|++|+|++. .+++++ +|+++++|+.++|+|+||||||||++.|.|++.|..+.+ ..++....          
T Consensus         3 ~i~~~~l~~~y~~~-~~~l~~-v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~   79 (235)
T COG1122           3 MIEAENLSFRYPGR-KAALKD-VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQ   79 (235)
T ss_pred             eEEEEEEEEEcCCC-ceeeee-eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhc
Confidence            46789999999776 689999 999999999999999999999999999999888765433 22222110          


Q ss_pred             cccccc--CCC-C-------------CC-CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 HADIIV--PRG-G-------------EN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~~~--~~~-~-------------~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      .....+  +.. .             .| ....+++...+.+.+.   .+.+....+..+..|||||+||||||.++.. 
T Consensus        80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~---~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~  156 (235)
T COG1122          80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALE---LVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG  156 (235)
T ss_pred             ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHH---HcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence            011111  100 0             11 1112233333323332   2333333455677999999999999999864 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.++...-+.+.|.++||-+.
T Consensus       157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~  201 (235)
T COG1122         157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL  201 (235)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence                                6777777777767888999998664

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.87  E-value=2.4e-23  Score=178.22  Aligned_cols=149  Identities=15%  Similarity=0.132  Sum_probs=100.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~   97 (199)
                      .++++|++++|++.  .+|++ +||++++|++++|+||||||||||+++|+|+..+..+. +..++....       ...
T Consensus         4 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~r~ig   79 (353)
T TIGR03265         4 YLSIDNIRKRFGAF--TALKD-ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT-IYQGGRDITRLPPQKRDYG   79 (353)
T ss_pred             EEEEEEEEEEeCCe--EEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence            58899999999764  68999 99999999999999999999999999999988765443 333322110       011


Q ss_pred             cccCCC--CCCCch--------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPRG--GENCVA--------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~~--~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+...  ..+...              .......+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~---~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll  156 (353)
T TIGR03265        80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLD---LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL  156 (353)
T ss_pred             EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            111110  000000              0111111211111   2334444455788999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.+...+.++++|.++||++
T Consensus       157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~  196 (353)
T TIGR03265       157 LLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE  196 (353)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence                            667777777777889999999876

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.87  E-value=7.1e-23  Score=174.55  Aligned_cols=150  Identities=13%  Similarity=0.115  Sum_probs=98.6

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      |+++||+++|+..  ..++|++ +||++++|++++|+|+||||||||+++|+|++.+..+.+ ..++...          
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~-vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I-~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNN-VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV-IVDGQDLTTLSNSELTK   79 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHH
Confidence            6789999999632  2479999 999999999999999999999999999999887765433 3332111          


Q ss_pred             --cccccccCC-CCC-CCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          94 --VHADIIVPR-GGE-NCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 --~~~~~~~~~-~~~-~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ....+.+.. ... .....+              ...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~---~vgL~~~~~~~~~~LSgGqkQRV~IARAL~  156 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLA---LVGLGDKHDSYPSNLSGGQKQRVAIARALA  156 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence              001111111 111 000001              11111111111   233333345567899999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.++..+.+++.|+++||.+
T Consensus       157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~  202 (343)
T TIGR02314       157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD  202 (343)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6                     667777777766889999999765

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.8e-23  Score=176.55  Aligned_cols=150  Identities=11%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~   97 (199)
                      .++++|+++.|++. ..+|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++....       ...
T Consensus         3 ~l~i~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig   79 (356)
T PRK11650          3 GLKLQAVRKSYDGK-TQVIKG-IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE-IWIGGRVVNELEPADRDIA   79 (356)
T ss_pred             EEEEEeEEEEeCCC-CEEEee-eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence            47899999999422 379999 99999999999999999999999999999988765443 333322110       011


Q ss_pred             cccCCC--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPRG--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+...  ..+..              ......+.+.+.+.   .+.+....+..+.+|||||+|||+||||+..     
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll  156 (356)
T PRK11650         80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAAR---ILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF  156 (356)
T ss_pred             EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH---HcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            111110  00000              00111111211111   1233333345677999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++....++++|.++||.+
T Consensus       157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~  196 (356)
T PRK11650        157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV  196 (356)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                            566666776666889999999875

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.7e-23  Score=176.26  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=99.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~   97 (199)
                      .|+++|+++.|++.  .++++ +||++++|++++|+||||||||||+++|+|+..+..+. +..++...       ....
T Consensus         6 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig   81 (351)
T PRK11432          6 FVVLKNITKRFGSN--TVIDN-LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ-IFIDGEDVTHRSIQQRDIC   81 (351)
T ss_pred             EEEEEeEEEEECCe--EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence            58899999999754  78999 99999999999999999999999999999998766543 33332211       0011


Q ss_pred             cccCC-C-CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-G-GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~-~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+.. . ..+..              ......+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~---~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL  158 (351)
T PRK11432         82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE---LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL  158 (351)
T ss_pred             EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            11111 0 00100              00111112211111   1223333345678999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +...+.++..+.++++|.++||++
T Consensus       159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~  198 (351)
T PRK11432        159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS  198 (351)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence                            666677777777889999999876

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.87  E-value=3.9e-23  Score=186.44  Aligned_cols=155  Identities=13%  Similarity=0.030  Sum_probs=103.1

Q ss_pred             cCcccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640          24 RGRDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------   94 (199)
                      ..++++||+|+|++.   .+++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..|+....      
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~-vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i-~~~g~~i~~~~~~~  413 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGP-IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI-LLDGAAVSADSRDD  413 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceecc-ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHH
Confidence            469999999999753   2369999 999999999999999999999999999999988765433 23221110      


Q ss_pred             ---cccc-ccC-----C-CCCC---CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          95 ---HADI-IVP-----R-GGEN---CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        95 ---~~~~-~~~-----~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                         .... ...     . ..+|   ..+.+++.+.++..........+|.++++ +.+||||||||++||||++.     
T Consensus       414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~il  492 (555)
T TIGR01194       414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPIL  492 (555)
T ss_pred             HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEE
Confidence               0000 000     0 0111   12234555556333334455568888887 47899999999999999976     


Q ss_pred             ------------hH----HHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------ME----QAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------~~----~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                  ..    +.+.+.+...+-+.|.|+|+..+
T Consensus       493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~  533 (555)
T TIGR01194       493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY  533 (555)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence                        22    33322221225677999998754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.86  E-value=7.1e-23  Score=175.77  Aligned_cols=151  Identities=11%  Similarity=0.090  Sum_probs=99.8

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe-eeeecccchhc-------cc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-VTLLSMDSFYR-------VH   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-~~~i~~d~~~~-------~~   95 (199)
                      +.++++||+++|++.  .++++ +||++++|++++|+||||||||||+++|+|++.+.. .|.+..++...       ..
T Consensus         4 ~~l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~   80 (362)
T TIGR03258         4 GGIRIDHLRVAYGAN--TVLDD-LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG   80 (362)
T ss_pred             eEEEEEEEEEEECCe--EEEee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence            368999999999764  79999 999999999999999999999999999999887655 13343333211       01


Q ss_pred             cccccCCC-CC-CCchH--------------HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          96 ADIIVPRG-GE-NCVAI--------------DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~~~~~~-~~-~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ..+.+... .. +....              ....+.+.+.+   ..+.+....+..+.+|||||+|||+||||++.   
T Consensus        81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l---~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~  157 (362)
T TIGR03258        81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADAL---KLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD  157 (362)
T ss_pred             EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---HhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            11111111 00 10000              11111121111   12333333455678999999999999999975   


Q ss_pred             ------------------hHHHHHhhcccc-ceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDI-RIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~-~~~~~~~~~~~~  180 (199)
                                        +.+.+.++.... ++++|.++||.+
T Consensus       158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~  200 (362)
T TIGR03258       158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD  200 (362)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence                              666666666665 688999999876

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=7.7e-23  Score=169.54  Aligned_cols=154  Identities=18%  Similarity=0.162  Sum_probs=102.7

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccchhc-ccc--
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDSFYR-VHA--   96 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~~~~-~~~--   96 (199)
                      ++++|++..|...  ...+++| |||++++||++||+|+|||||||+++.|++++..+    ..|.+..++... ...  
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~-vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDG-VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEec-eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            6789999999653  3579999 99999999999999999999999999999999732    233443333210 000  


Q ss_pred             ----------ccccCC--CCCCCch-H-HHHHHHHHHH-------------HhcCceeecCC---ceeeecceecCCeee
Q psy9640          97 ----------DIIVPR--GGENCVA-I-DLIVQHIHSQ-------------LQAGVSVDMPQ---GYTYEGKRCAVSKIC  146 (199)
Q Consensus        97 ----------~~~~~~--~~~~~~~-~-~~~~~~l~~~-------------~~~~~~~~~~~---~~~~~g~~lSgGq~Q  146 (199)
                                .+.+..  ...|+.- . +++.+.+..+             ...-..+.+|.   -++..|++|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                      011111  1122211 1 2222222111             11112344543   245579999999999


Q ss_pred             eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||.||-|+..                     +.+.+.++..+.+.+.|+||||=.
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~  215 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG  215 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999864                     777788888888999999999865

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.86  E-value=7.5e-23  Score=176.28  Aligned_cols=149  Identities=15%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~   97 (199)
                      .++++|+++.|++.  +++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ....
T Consensus        14 ~L~l~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig   89 (375)
T PRK09452         14 LVELRGISKSFDGK--EVISN-LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR-IMLDGQDITHVPAENRHVN   89 (375)
T ss_pred             eEEEEEEEEEECCe--EEEee-eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence            48999999999754  78999 99999999999999999999999999999988765443 33332211       0011


Q ss_pred             cccCCC--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPRG--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+...  ..+..              ......+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll  166 (375)
T PRK09452         90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALR---MVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL  166 (375)
T ss_pred             EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            111110  00000              00111111211121   1233333455678999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++..+.++++|.|+||+.
T Consensus       167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~  206 (375)
T PRK09452        167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE  206 (375)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                            677777777777889999999876

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=6.4e-23  Score=173.97  Aligned_cols=152  Identities=16%  Similarity=0.134  Sum_probs=98.1

Q ss_pred             Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC---Ceeeeecccchhcc-----
Q psy9640          25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFYRV-----   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~---~~~~~i~~d~~~~~-----   94 (199)
                      -++++|+++.|+...  ..+|+| |||++.+|++++|+|+||||||||+++|+|++.+   +..|.+..++....     
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDR-ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEee-eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            378999999996532  369999 9999999999999999999999999999999864   23444444332110     


Q ss_pred             --------ccccccCCC--CCCC-chH-HHHHH---------------HHHHHHhcCceeecCC---ceeeecceecCCe
Q psy9640          95 --------HADIIVPRG--GENC-VAI-DLIVQ---------------HIHSQLQAGVSVDMPQ---GYTYEGKRCAVSK  144 (199)
Q Consensus        95 --------~~~~~~~~~--~~~~-~~~-~~~~~---------------~l~~~~~~~~~~~~~~---~~~~~g~~lSgGq  144 (199)
                              ...+.....  ..++ ... +.+..               .+.+.+   ..+.++.   .++..+.+|||||
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L---~~~gL~~~~~~l~~~p~~LSgGq  158 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL---NQVGIPDPASRLDVYPHQLSGGM  158 (326)
T ss_pred             HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHCCCCChHHHHhCCchhCCHHH
Confidence                    011111110  0111 000 11111               111111   1223321   2345688999999


Q ss_pred             eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +|||+||||++.                     +.+.+.++..+.+.+.|+|+||-.
T Consensus       159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~  215 (326)
T PRK11022        159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA  215 (326)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            999999999975                     556666666656788999999865

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.86  E-value=7e-23  Score=173.98  Aligned_cols=156  Identities=15%  Similarity=0.110  Sum_probs=99.9

Q ss_pred             ccccCcccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcc--
Q psy9640          21 ILARGRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRV--   94 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~--   94 (199)
                      ..+.-++++|+++.|..  ....++++ +||++.+|++++|+|+||||||||+++|+|++.+.  ..|.+..++....  
T Consensus         8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~   86 (330)
T PRK09473          8 QADALLDVKDLRVTFSTPDGDVTAVND-LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL   86 (330)
T ss_pred             CCCceEEEeCeEEEEecCCCCEEEEee-eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence            33446899999999963  22469999 99999999999999999999999999999998764  2344444332110  


Q ss_pred             -----------ccccccCCC--CCCC-ch-HHHH---------------HHHHHHHHhcCceeecCCc---eeeecceec
Q psy9640          95 -----------HADIIVPRG--GENC-VA-IDLI---------------VQHIHSQLQAGVSVDMPQG---YTYEGKRCA  141 (199)
Q Consensus        95 -----------~~~~~~~~~--~~~~-~~-~~~~---------------~~~l~~~~~~~~~~~~~~~---~~~~g~~lS  141 (199)
                                 ...+.+...  ..++ .. .+.+               .+.+.+.+.   .+.++..   ++..+.+||
T Consensus        87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~---~vgL~~~~~~~~~~p~~LS  163 (330)
T PRK09473         87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD---AVKMPEARKRMKMYPHEFS  163 (330)
T ss_pred             CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCChHHHhcCCcccCC
Confidence                       011111110  1111 00 0111               111111111   2333321   234688999


Q ss_pred             CCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         142 VSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       142 gGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||+|||+||||++.                     +.+.+.++..+.+.+.|+|+||..
T Consensus       164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~  223 (330)
T PRK09473        164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG  223 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            999999999999975                     555666665655788999999865

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.86  E-value=5.9e-23  Score=201.89  Aligned_cols=153  Identities=13%  Similarity=0.122  Sum_probs=112.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH--------   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~--------   95 (199)
                      +.|+++||+++|+...+++|+| +||+|++|+.+||+|+||||||||+++|++++. . .|.+..|+.....        
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~-is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQD-LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T-EGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeec-cEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEcccCCHHHHHh
Confidence            4699999999997655689999 999999999999999999999999999999985 3 3455444432111        


Q ss_pred             --cccccCCC-----------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          96 --ADIIVPRG-----------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 --~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                        .-+++...           ..+..+.++++++++..........+|.++++    .|.+||||||||++||||++.  
T Consensus      1293 ~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271      1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred             ceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence              00111110           01123557788888555544555667888877    677999999999999999986  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+.+++.  ++|.|+|...+
T Consensus      1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~--TvI~IaHRl~t 1414 (1490)
T TIGR01271      1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSNC--TVILSEHRVEA 1414 (1490)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHcCCC--EEEEEecCHHH
Confidence                               667777777764  55999997554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.86  E-value=1.7e-22  Score=161.66  Aligned_cols=150  Identities=13%  Similarity=0.097  Sum_probs=93.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      ++++|++++|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++...            
T Consensus         2 l~~~~l~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~   79 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDN-LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREIPFLR   79 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHHHHHH
Confidence            67899999996533469999 9999999999999999999999999999998876543 333332110            


Q ss_pred             cccccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          94 VHADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        94 ~~~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ......... ..... ...+.+              .+.+.+.+.   ...++...+..+.+|||||+||++||||++. 
T Consensus        80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  156 (216)
T TIGR00960        80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALE---KVGLEGKAHALPMQLSGGEQQRVAIARAIVHK  156 (216)
T ss_pred             HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            000111111 11100 001111              111111111   1223333344567899999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+.... +.++|.++||.+.
T Consensus       157 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~  200 (216)
T TIGR00960       157 PPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINL  200 (216)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence                                44555554332 6778999998763

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.86  E-value=1.1e-22  Score=174.18  Aligned_cols=148  Identities=11%  Similarity=0.112  Sum_probs=98.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      |+++|+++.|++.  .++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ....+
T Consensus         3 L~i~~l~~~~~~~--~~l~~-isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~i~~   78 (353)
T PRK10851          3 IEIANIKKSFGRT--QVLND-ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH-IRFHGTDVSRLHARDRKVGF   78 (353)
T ss_pred             EEEEEEEEEeCCe--EEEEE-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCHHHCCEEE
Confidence            7899999999764  79999 99999999999999999999999999999988765433 33322111       00011


Q ss_pred             ccCCC-CC-C------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          99 IVPRG-GE-N------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        99 ~~~~~-~~-~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .+... .. +                  ........+.+.+.+.   .+.++...+..+.+|||||+|||+||||+..  
T Consensus        79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P  155 (353)
T PRK10851         79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLE---MVQLAHLADRYPAQLSGGQKQRVALARALAVEP  155 (353)
T ss_pred             EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            11110 00 0                  0011111112211121   2234444455678999999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.++....+.++|.++||.+
T Consensus       156 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~  198 (353)
T PRK10851        156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE  198 (353)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                               666677776666788999999876

>PLN03232 ABC transporter C family member; Provisional

Probab=99.86  E-value=1.1e-22  Score=200.26  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=105.3

Q ss_pred             Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee---------eecccchhcc
Q psy9640          25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT---------LLSMDSFYRV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~---------~i~~d~~~~~   94 (199)
                      .++++|++|.|++. .+++|+| +||++++|+.++|+|+||||||||+++|+|.+.+..++         +++|+.....
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~-inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~  692 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSD-INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN  692 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence            59999999999753 3579999 99999999999999999999999999999999876433         3333332111


Q ss_pred             ccccccCCC-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-------------
Q psy9640          95 HADIIVPRG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus        95 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      .  ...++- ..++.+.+...++++..........+|.|++|    .|.+|||||||||+||||++.             
T Consensus       693 g--TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa  770 (1495)
T PLN03232        693 A--TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA  770 (1495)
T ss_pred             c--cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            0  000000 01133445555556433333445678888877    688999999999999999975             


Q ss_pred             --------h-HHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------M-EQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------~-~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                              + ...+....++  -+.|.|+|+...
T Consensus       771 LD~~t~~~I~~~~l~~~l~~--kT~IlvTH~~~~  802 (1495)
T PLN03232        771 LDAHVAHQVFDSCMKDELKG--KTRVLVTNQLHF  802 (1495)
T ss_pred             cCHHHHHHHHHHHhhhhhcC--CEEEEEECChhh
Confidence                    2 2223333333  567999997553

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.8e-22  Score=174.09  Aligned_cols=149  Identities=11%  Similarity=0.129  Sum_probs=99.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~   97 (199)
                      -++++|+++.|++.  +++++ ++|++++|++++|+||||||||||+++|+|+..+..+. +..++....       ...
T Consensus        19 ~l~l~~v~~~~~~~--~~l~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig   94 (377)
T PRK11607         19 LLEIRNLTKSFDGQ--HAVDD-VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ-IMLDGVDLSHVPPYQRPIN   94 (377)
T ss_pred             eEEEEeEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHHHCCEE
Confidence            49999999999754  78999 99999999999999999999999999999988765443 323322110       011


Q ss_pred             cccCCC--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPRG--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+...  ..+-.              ......+.+.+.+.   .+.+....+..+.+|||||+|||+||||+..     
T Consensus        95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~---~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL  171 (377)
T PRK11607         95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG---LVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL  171 (377)
T ss_pred             EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            111110  00000              01111111211111   1233333355678999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++..+.++++|.++||++
T Consensus       172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~  211 (377)
T PRK11607        172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE  211 (377)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence                            556666777777899999999877

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.85  E-value=2.5e-22  Score=177.14  Aligned_cols=155  Identities=17%  Similarity=0.155  Sum_probs=105.1

Q ss_pred             Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---eeeeecccchh-cccc--
Q psy9640          25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFY-RVHA--   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---~~~~i~~d~~~-~~~~--   96 (199)
                      -++++|++..|....  ..+++| |||++.+||++||+|+|||||||+++.|+|++...   ..|.+..++.. ....  
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~-vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRD-VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeec-ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            588999999996543  359999 99999999999999999999999999999999765   23444333321 0000  


Q ss_pred             ----------ccccCC--CCCCC-chH-HHHHHHHH------------HHHhcCceeecCCcee--eecceecCCeeeee
Q psy9640          97 ----------DIIVPR--GGENC-VAI-DLIVQHIH------------SQLQAGVSVDMPQGYT--YEGKRCAVSKICGV  148 (199)
Q Consensus        97 ----------~~~~~~--~~~~~-~~~-~~~~~~l~------------~~~~~~~~~~~~~~~~--~~g~~lSgGq~Qrv  148 (199)
                                .+.+.+  ...|+ ... +++.+.+.            .....-..+.+|+...  ..|++|||||+|||
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence                      011111  11232 111 12211110            0111112455655422  37899999999999


Q ss_pred             eEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .||+|+..                     +.+.++++..+.+++.|+|+||.+
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~  216 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG  216 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence            99999964                     788888999999999999999976

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.85  E-value=2.6e-22  Score=180.85  Aligned_cols=153  Identities=13%  Similarity=0.123  Sum_probs=96.3

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ..++++||+|+|++. .++|++ +||++++|++++|+|+||||||||+++|+|.+.|..+. +..|+....         
T Consensus       321 ~~i~~~~v~f~y~~~-~~~l~~-i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~-i~~~g~~~~~~~~~~~~~  397 (547)
T PRK10522        321 QTLELRNVTFAYQDN-GFSVGP-INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVTAEQPEDYRK  397 (547)
T ss_pred             ceEEEEEEEEEeCCC-CeEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCCCCHHHHhh
Confidence            369999999999753 369999 99999999999999999999999999999988765433 333322110         


Q ss_pred             ccc-cccCC-----C-CCC--CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640          95 HAD-IIVPR-----G-GEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus        95 ~~~-~~~~~-----~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                      ... .....     . ..|  ..+.+.+.+.+ +..........+.+. ..|.+|||||+||++||||++.         
T Consensus       398 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-~~G~~LSgGq~qRl~lARal~~~~~ililDE  475 (547)
T PRK10522        398 LFSAVFTDFHLFDQLLGPEGKPANPALVEKWL-ERLKMAHKLELEDGR-ISNLKLSKGQKKRLALLLALAEERDILLLDE  475 (547)
T ss_pred             heEEEecChhHHHHhhccccCchHHHHHHHHH-HHcCCchhhhccccC-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            000 00000     0 111  12223333334 222222222222221 1367999999999999999975         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                  +.+.+.+.+.....++|.|+|+..+
T Consensus       476 ~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~  512 (547)
T PRK10522        476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY  512 (547)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence                        3334444433235678999998653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.85  E-value=4.2e-22  Score=161.38  Aligned_cols=148  Identities=14%  Similarity=0.172  Sum_probs=92.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...            
T Consensus         1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~~~   76 (235)
T cd03261           1 IELRGLTKSFGGR--TVLKG-VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE-VLIDGEDISGLSEAELYRLR   76 (235)
T ss_pred             CeEEEEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccChhhHHHHh
Confidence            4689999999754  79999 99999999999999999999999999999988765443 33332110            


Q ss_pred             cccccccCC-CCCCCch-HHH---------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          94 VHADIIVPR-GGENCVA-IDL---------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 ~~~~~~~~~-~~~~~~~-~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ......... ....... .+.               ..+.+.+.+.   ...+....+..+.+|||||+|||+||||++.
T Consensus        77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~  153 (235)
T cd03261          77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE---AVGLRGAEDLYPAELSGGMKKRVALARALAL  153 (235)
T ss_pred             cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            000010000 0000000 011               1111111111   1233333344667899999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                           +.+.+.+...+.+.++|.++||.+
T Consensus       154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~  198 (235)
T cd03261         154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD  198 (235)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence                                 445555544333678899999876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.85  E-value=3.2e-22  Score=197.55  Aligned_cols=151  Identities=13%  Similarity=0.111  Sum_probs=104.9

Q ss_pred             Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe-e--------eeecccchhcc
Q psy9640          25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-V--------TLLSMDSFYRV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-~--------~~i~~d~~~~~   94 (199)
                      .++++|++|.|+.. .+++|+| +||++++|++++|+||||||||||++.|+|.+.+.. +        ++++|+.....
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~-inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSN-INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN  692 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeec-eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence            59999999999753 3579999 999999999999999999999999999999998765 2        22333322111


Q ss_pred             ccccccCCC-CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-------------
Q psy9640          95 HADIIVPRG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus        95 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      .  ...++- ...+.+.+...++++..........+|.|++|    .|.+|||||||||+||||++.             
T Consensus       693 g--TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA  770 (1622)
T PLN03130        693 A--TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA  770 (1622)
T ss_pred             C--CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence            0  000000 11233445555666444444456678988887    688999999999999999975             


Q ss_pred             --------h-HHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------M-EQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------~-~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                              + ...+....+  +-+.|.|+|+..
T Consensus       771 LD~~~~~~I~~~~l~~~l~--~kTvIlVTH~l~  801 (1622)
T PLN03130        771 LDAHVGRQVFDKCIKDELR--GKTRVLVTNQLH  801 (1622)
T ss_pred             cCHHHHHHHHHHHhhHHhc--CCEEEEEECCHh
Confidence                    2 222333333  356799999754

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.8e-22  Score=171.32  Aligned_cols=151  Identities=13%  Similarity=0.109  Sum_probs=98.4

Q ss_pred             Ccccccceeecccc--------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---
Q psy9640          25 GRDLEGVIKQYVNM--------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---   93 (199)
                      -|+++|+++.|+..        ...++++ |||++.+|++++|+|+||||||||+++|+|++.+.. |.+..++...   
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~-G~i~~~g~~l~~~   82 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDG-VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG-GELYYQGQDLLKA   82 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEee-eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-cEEEECCEEcCcC
Confidence            48899999999631        2479999 999999999999999999999999999999887653 3333333211   


Q ss_pred             ---------cccccccCCC--CCCC-chH-HHH---------------HHHHHHHHhcCceeecC-CceeeecceecCCe
Q psy9640          94 ---------VHADIIVPRG--GENC-VAI-DLI---------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSK  144 (199)
Q Consensus        94 ---------~~~~~~~~~~--~~~~-~~~-~~~---------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq  144 (199)
                               ....+.+...  ..++ ... +.+               .+.+.+.+.   .+.++ ..++..+.+|||||
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~p~~LSgGq  159 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA---KVGLRPEHYDRYPHMFSGGQ  159 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHH---HCCCChHHhcCCCccCCHHH
Confidence                     0011111110  0111 000 111               111111111   22333 24466788999999


Q ss_pred             eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +|||+||||++.                     +.+.|.++..+.+.+.|+|+||-.
T Consensus       160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~  216 (327)
T PRK11308        160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS  216 (327)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            999999999975                     556666766666788999999866

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.85  E-value=3.1e-22  Score=162.27  Aligned_cols=152  Identities=18%  Similarity=0.188  Sum_probs=92.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------ccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~   96 (199)
                      ++++|+++.|+...++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...         ...
T Consensus         1 i~~~~l~~~~~~~~~~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~i   78 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDN-ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR-VLVDGHDLALADPAWLRRQV   78 (237)
T ss_pred             CEEEEEEEecCCCCccceec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCeehHhcCHHHHhhcE
Confidence            46899999996533579999 99999999999999999999999999999998665432 22222110         000


Q ss_pred             ccccCC-CCCC------------CchHHHHHHHHHHHHhcCceeecCCc----eeeecceecCCeeeeeeEEeccch---
Q psy9640          97 DIIVPR-GGEN------------CVAIDLIVQHIHSQLQAGVSVDMPQG----YTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        97 ~~~~~~-~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ...... ...+            ......+...+...........+|.+    .+..+.+|||||+|||+||||++.   
T Consensus        79 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~  158 (237)
T cd03252          79 GVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR  158 (237)
T ss_pred             EEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            000000 0000            00111111111000000011112222    233567999999999999999975   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                        +.+.+.++..  +.+.|.++||.+.
T Consensus       159 llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~  199 (237)
T cd03252         159 ILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLST  199 (237)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH
Confidence                              5556666543  5778999998764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.1e-22  Score=171.02  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=96.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~   97 (199)
                      .++++|++++|++.  .+|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ....
T Consensus         3 ~l~i~~l~~~~~~~--~vl~~-vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~i~   78 (369)
T PRK11000          3 SVTLRNVTKAYGDV--VISKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD-LFIGEKRMNDVPPAERGVG   78 (369)
T ss_pred             EEEEEEEEEEeCCe--EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCCCCHhHCCEE
Confidence            47899999999754  69999 99999999999999999999999999999988765443 32222110       0001


Q ss_pred             cccCC-CCC-CCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-GGE-NCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~~~-~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.... ... +..              ......+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL  155 (369)
T PRK11000         79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE---VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF  155 (369)
T ss_pred             EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH---HcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            11111 000 000              00111111111111   1233333345677999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.+.....+.++|.++||.+
T Consensus       156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~  195 (369)
T PRK11000        156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV  195 (369)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence                            555566665555788899999875

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.84  E-value=4.5e-22  Score=195.02  Aligned_cols=156  Identities=15%  Similarity=0.125  Sum_probs=105.7

Q ss_pred             Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh---------cc
Q psy9640          25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY---------RV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~---------~~   94 (199)
                      .|+++||+|+|++. ..++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+...|+..         +.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~-isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~  460 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKD-LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS  460 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence            69999999999854 2479999 9999999999999999999999999999999987654433212110         00


Q ss_pred             cccc-c---------------cCCCC------------------------------------------------------
Q psy9640          95 HADI-I---------------VPRGG------------------------------------------------------  104 (199)
Q Consensus        95 ~~~~-~---------------~~~~~------------------------------------------------------  104 (199)
                      .... .               .....                                                      
T Consensus       461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  540 (1466)
T PTZ00265        461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN  540 (1466)
T ss_pred             hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence            0000 0               00000                                                      


Q ss_pred             CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------------hHH
Q psy9640         105 ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------------MEQ  159 (199)
Q Consensus       105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------------~~~  159 (199)
                      ......+.+.++++......+...+|.+++|    .|.+|||||||||+||||++.                     +.+
T Consensus       541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~  620 (1466)
T PTZ00265        541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK  620 (1466)
T ss_pred             cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence            0011224455555444334445578888876    578999999999999999976                     444


Q ss_pred             HHHhhccccceeEEEEEeCCCC
Q psy9640         160 AVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       160 ~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      .+.+....-+.++|.|+|+..+
T Consensus       621 ~L~~~~~~~g~TvIiIsHrls~  642 (1466)
T PTZ00265        621 TINNLKGNENRITIIIAHRLST  642 (1466)
T ss_pred             HHHHHhhcCCCEEEEEeCCHHH
Confidence            4444433235678999998764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.84  E-value=6e-22  Score=158.92  Aligned_cols=154  Identities=16%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~   95 (199)
                      .++++|++++|+...++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...         ..
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~   79 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKN-ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS-ILIDGVDISKIGLHDLRSR   79 (221)
T ss_pred             cEEEEEEEEecCCCCcccccc-eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhHhCCHHHHhhh
Confidence            478999999997543579999 99999999999999999999999999999987665433 32222110         00


Q ss_pred             cccccCC-CC-----------CCCchHHHHHHHHHHHHhcCceeecCCcee----eecceecCCeeeeeeEEeccch---
Q psy9640          96 ADIIVPR-GG-----------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYT----YEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~~~~~-~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ....... ..           ......+.+.+.+...........+|.++.    ..+..|||||+||++||||++.   
T Consensus        80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  159 (221)
T cd03244          80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            0000000 00           001111222222211111111112233332    2567899999999999999975   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                        +.+.+.+...  +.++|+++|+.+.+
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~  201 (221)
T cd03244         160 ILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTI  201 (221)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH
Confidence                              4455555543  36789999987643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.84  E-value=4e-22  Score=169.34  Aligned_cols=151  Identities=14%  Similarity=0.126  Sum_probs=97.6

Q ss_pred             Ccccccceeecccc-----------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640          25 GRDLEGVIKQYVNM-----------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-----------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~   93 (199)
                      -++++||++.|+..           ...++++ +||++++|++++|+|+||||||||+++|+|++.+..+ .+..++...
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i   85 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDG-VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKDL   85 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEee-EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEEC
Confidence            48999999999631           2468999 9999999999999999999999999999998876543 333332211


Q ss_pred             c------------ccccccCCC--CCCC-ch-HHHH----------------HHHHHHHHhcCceeecC-Cceeeeccee
Q psy9640          94 V------------HADIIVPRG--GENC-VA-IDLI----------------VQHIHSQLQAGVSVDMP-QGYTYEGKRC  140 (199)
Q Consensus        94 ~------------~~~~~~~~~--~~~~-~~-~~~~----------------~~~l~~~~~~~~~~~~~-~~~~~~g~~l  140 (199)
                      .            ...+.....  ..++ .. .+.+                .+.+.+.+   ..+.++ ...+..+.+|
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l---~~vgl~~~~~~~~p~~L  162 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMM---LKVGLLPNLINRYPHEF  162 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH---HHcCCChHHhcCCcccC
Confidence            0            011111110  0111 00 1111                11111111   122332 2345678899


Q ss_pred             cCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         141 AVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       141 SgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||||+|||+||||++.                     +.+.+.++....+.+.|+|+||.+
T Consensus       163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~  223 (331)
T PRK15079        163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA  223 (331)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            9999999999999975                     555666665555788899999865

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.84  E-value=4.2e-22  Score=165.28  Aligned_cols=152  Identities=13%  Similarity=0.088  Sum_probs=100.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      .|+++|++++|+....++|++ +||+|++|++++|+|+||||||||+++|+|++. .. |.+..++....         .
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~-isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~-G~I~i~g~~i~~~~~~~lr~~   78 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE-GDIQIDGVSWNSVPLQKWRKA   78 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC-cEEEECCEEhhhCCHHHHhhh
Confidence            578999999996544579999 999999999999999999999999999999986 33 44444442110         0


Q ss_pred             cccc-cCCCC-----------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---
Q psy9640          96 ADII-VPRGG-----------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~~-~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ..+. .....           ......+.+.+.+.........-..|.++++    .|..|||||+||++||||++.   
T Consensus        79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~  158 (275)
T cd03289          79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  158 (275)
T ss_pred             EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            0010 00000           0112223444444222212223334554444    567899999999999999976   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                        +.+.+.+...  ..+.|+|+|+.+.
T Consensus       159 illlDEpts~LD~~~~~~l~~~l~~~~~--~~tii~isH~~~~  199 (275)
T cd03289         159 ILLLDEPSAHLDPITYQVIRKTLKQAFA--DCTVILSEHRIEA  199 (275)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEECCHHH
Confidence                              5566665543  4667999998764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.84  E-value=8e-22  Score=157.91  Aligned_cols=151  Identities=14%  Similarity=0.069  Sum_probs=93.5

Q ss_pred             cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      ++++|+++.|++..  ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++...          
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~-~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~   78 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKG-VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAA   78 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEee-eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHHHH
Confidence            46899999997521  479999 9999999999999999999999999999998876543 333332110          


Q ss_pred             ---ccccc-ccCCCCCCCchH-HH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          94 ---VHADI-IVPRGGENCVAI-DL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        94 ---~~~~~-~~~~~~~~~~~~-~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                         ..... ............ +.              ..+.+.+.+.   ...+....+..+.+|||||+||++||||+
T Consensus        79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al  155 (218)
T cd03255          79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLE---RVGLGDRLNHYPSELSGGQQQRVAIARAL  155 (218)
T ss_pred             HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHH---HcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence               00011 001011111010 10              0011111111   12232223446778999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +.                     +.+.+.+....-+.++|+++||.+.
T Consensus       156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  203 (218)
T cd03255         156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL  203 (218)
T ss_pred             ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence            75                     4444555443236788999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.84  E-value=7.6e-22  Score=158.23  Aligned_cols=57  Identities=19%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .++++|+++.|++..+.++++ +||++++|++++|+||||||||||+++|+|...+..
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~-i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~   58 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDN-VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS   58 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence            478999999997533479999 999999999999999999999999999999876543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=8.5e-22  Score=168.17  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=95.4

Q ss_pred             cccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          26 RDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        26 i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      ++++|++++|+.  ..+++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...          
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~-vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~   79 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNN-VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR-VLVDGQDLTALSEKELRK   79 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECCcCCHHHHHH
Confidence            678999999972  23479999 99999999999999999999999999999988765443 33332110          


Q ss_pred             --cccccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          94 --VHADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 --~~~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ......... ..... ...+.+              .+.+.+.+.   .+.++...+..+.+|||||+||++||||++
T Consensus        80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~qRv~lAraL~  156 (343)
T PRK11153         80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLE---LVGLSDKADRYPAQLSGGQKQRVAIARALA  156 (343)
T ss_pred             HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence              011111111 11110 001111              111111111   123333334567799999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.+.....+.++|+++||.+
T Consensus       157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~  202 (343)
T PRK11153        157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD  202 (343)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6                     555555555544678899999765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8e-22  Score=167.52  Aligned_cols=152  Identities=14%  Similarity=0.084  Sum_probs=97.1

Q ss_pred             Ccccccceeeccc--cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC---Ceeeeecccchhcc-----
Q psy9640          25 GRDLEGVIKQYVN--MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSFYRV-----   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~--~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~---~~~~~i~~d~~~~~-----   94 (199)
                      -++++|+++.|+.  ....++++ +||+|.+|++++|+|+||||||||+++|+|++.+   +..|.+..++....     
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~-vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDR-VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEee-eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            3789999999953  22469999 9999999999999999999999999999999863   23444444332110     


Q ss_pred             --------ccccccCCC--CCCCc-h-HHHHHH--------------------HHHHHHhcCceeecCC---ceeeecce
Q psy9640          95 --------HADIIVPRG--GENCV-A-IDLIVQ--------------------HIHSQLQAGVSVDMPQ---GYTYEGKR  139 (199)
Q Consensus        95 --------~~~~~~~~~--~~~~~-~-~~~~~~--------------------~l~~~~~~~~~~~~~~---~~~~~g~~  139 (199)
                              ...+.+...  ..++. . .+.+..                    .+.+.+   ..+.+..   .++..+.+
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~~~gL~~~~~~~~~~p~~  158 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELL---HRVGIKDHKDAMRSFPYE  158 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHH---HHCCCCChHHHHhCCchh
Confidence                    011111110  01110 0 111111                    111111   1123321   23456789


Q ss_pred             ecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         140 CAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       140 lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||||+|||+||||++.                     +.+.+.++....+.+.|+|+||-+
T Consensus       159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~  220 (330)
T PRK15093        159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ  220 (330)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            99999999999999976                     666666666556788999999865

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.84  E-value=1e-21  Score=157.58  Aligned_cols=149  Identities=13%  Similarity=0.137  Sum_probs=92.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------ccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------HAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~~~   97 (199)
                      ++++|++++|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....        ...
T Consensus         1 i~~~~~~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGDF--EAVRG-VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR-ATVAGHDVVREPREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECCE--Eeeec-eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecCcChHHHhhcEE
Confidence            5789999999764  79999 99999999999999999999999999999988665443 333321100        001


Q ss_pred             cccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ..... ..... ...+.+              .+.+.+.+.   ...++...+..+.+|||||+||++||||++.     
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll  153 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD---FVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL  153 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            11111 11100 001111              011111111   1223322344567899999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                      +.+.+.+....-+.++|.++||.+.
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~  194 (220)
T cd03265         154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE  194 (220)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                            4444444444335788999998763

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.84  E-value=9.9e-22  Score=155.99  Aligned_cols=154  Identities=12%  Similarity=0.039  Sum_probs=91.7

Q ss_pred             cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhcc
Q psy9640          26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRV   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~   94 (199)
                      ++++||+++|.+..   ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+        ++++++.....
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~-~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~   79 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKD-INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN   79 (204)
T ss_pred             CEEeEEEEecCCCCccccceeee-eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence            56899999997542   369999 9999999999999999999999999999998876543        33333322111


Q ss_pred             ccccccCCCCCCCchHHHHHHHHHHHHhcCceeecCCce----eeecceecCCeeeeeeEEeccch--------------
Q psy9640          95 HADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGY----TYEGKRCAVSKICGVSILRAGET--------------  156 (199)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~g~~lSgGq~QrvaiaRA~~~--------------  156 (199)
                      ..-....... .....+...+.+............|.++    ...+.+||+||+||++||||+..              
T Consensus        80 ~t~~enl~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L  158 (204)
T cd03250          80 GTIRENILFG-KPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV  158 (204)
T ss_pred             CcHHHHhccC-CCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence            1000000000 0111112222221100111111222222    23567899999999999999975              


Q ss_pred             -------hHHHH-HhhccccceeEEEEEeCCCCC
Q psy9640         157 -------MEQAV-HDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -------~~~~l-~~~~p~~~~~~~~~~~~~~~~  182 (199)
                             +.+.+ .+.... +.+.|+++|+.+..
T Consensus       159 D~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~  191 (204)
T cd03250         159 DAHVGRHIFENCILGLLLN-NKTRILVTHQLQLL  191 (204)
T ss_pred             CHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHH
Confidence                   22222 222233 57889999987643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.84  E-value=6.9e-22  Score=158.63  Aligned_cols=151  Identities=15%  Similarity=0.081  Sum_probs=92.7

Q ss_pred             cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----ccccc-
Q psy9640          26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----VHADI-   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----~~~~~-   98 (199)
                      ++++|+++.|++..  ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++...    ..... 
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~-vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~i~~v   78 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALED-ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVTGPGPDRGYV   78 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEec-eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccccCcEEEE
Confidence            46899999997511  379999 9999999999999999999999999999998866543 333332110    00011 


Q ss_pred             ccCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------
Q psy9640          99 IVPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------  156 (199)
Q Consensus        99 ~~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------  156 (199)
                      ........... .+.+              .+.+...+.   ...+....+..+.+|||||+||++||||++.       
T Consensus        79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL  155 (220)
T cd03293          79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLE---LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL  155 (220)
T ss_pred             ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            00000000000 0110              111111111   1122222334567899999999999999976       


Q ss_pred             --------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                    +.+.+.+....-+.++|.++||.+.
T Consensus       156 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~  194 (220)
T cd03293         156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE  194 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence                          4455555444335678999998763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.84  E-value=1e-21  Score=156.05  Aligned_cols=148  Identities=10%  Similarity=0.080  Sum_probs=90.3

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------ccccccc
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------VHADIIV  100 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------~~~~~~~  100 (199)
                      +++|++++|++. ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...      .......
T Consensus         1 ~~~~l~~~~~~~-~~~l~~-v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~i~~~~   77 (205)
T cd03226           1 RIENISFSYKKG-TEILDD-LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVM   77 (205)
T ss_pred             CcccEEEEeCCc-Cceeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEhhhHHhhcceEEEe
Confidence            478999999752 379999 99999999999999999999999999999988765433 32222110      0000100


Q ss_pred             CCC---CCCCchHHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640         101 PRG---GENCVAIDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------  156 (199)
Q Consensus       101 ~~~---~~~~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------  156 (199)
                      ...   .......+.+.          ..+.+.+.   ...+....+..+..|||||+||++||||+..           
T Consensus        78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  154 (205)
T cd03226          78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLK---DLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT  154 (205)
T ss_pred             cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHH---HcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            000   00000000000          01111111   1122222344567899999999999999975           


Q ss_pred             ----------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ----------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                +.+.+.+.... +.+.|.++||.+.
T Consensus       155 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~  188 (205)
T cd03226         155 SGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEF  188 (205)
T ss_pred             ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence                      44444444322 6778999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=6.2e-22  Score=165.19  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=94.5

Q ss_pred             cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ++++||++.|+..   .+++|++ +||++.+|++++|+|+||||||||+++|+|++.+..+.+ ..++....        
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~-vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~   80 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDN-VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-IIDGVDITDKKVKLSD   80 (287)
T ss_pred             EEEEEEEEECCCCCccccceeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE-EECCEECCCcCccHHH
Confidence            6799999999642   2479999 999999999999999999999999999999887654433 22221110        


Q ss_pred             ---ccccccCC---CCCCCc--------------hHHHHHHHHHHHHhcCceeecC--CceeeecceecCCeeeeeeEEe
Q psy9640          95 ---HADIIVPR---GGENCV--------------AIDLIVQHIHSQLQAGVSVDMP--QGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        95 ---~~~~~~~~---~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~--~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                         ........   ......              ..+...+.+.+.+.   .+.++  ...+..+.+|||||+||++|||
T Consensus        81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~~LSgGq~qrv~iAr  157 (287)
T PRK13637         81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDYKDKSPFELSGGQKRRVAIAG  157 (287)
T ss_pred             HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHH---HcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence               00111110   000000              01111111111111   12332  2234567799999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |+..                     +.+.+.++....+.+.|.++||..
T Consensus       158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~  206 (287)
T PRK13637        158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME  206 (287)
T ss_pred             HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9975                     555555555544678899999855

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=1.9e-21  Score=145.53  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=100.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcc-------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRV-------HA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~-------~~   96 (199)
                      +.++||+..-+++  -.|.+ +|++|.+|+++.|+||||||||||+..+.|.+.+.  ..|.+..++....       ..
T Consensus         3 l~l~nvsl~l~g~--cLLa~-~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~   79 (213)
T COG4136           3 LCLKNVSLRLPGS--CLLAN-VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI   79 (213)
T ss_pred             eeeeeeeecCCCc--eEEEe-eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence            5678999888776  78899 99999999999999999999999999999988653  2233322222110       00


Q ss_pred             cccc------C--CCCCC-----CchH--HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          97 DIIV------P--RGGEN-----CVAI--DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        97 ~~~~------~--~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ++.+      +  .-..|     +.+.  +.-.+.....+.   .+.+...++..|.+||||||-||++.|++++     
T Consensus        80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~---~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l  156 (213)
T COG4136          80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALE---RSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL  156 (213)
T ss_pred             eeeecccccccccccccceEEecCcccccHHHHhhHHHHHH---HhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence            1100      0  00111     1111  111111111111   2233334455677999999999999999986     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCCCCchh
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKATDEPEL  186 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  186 (199)
                                      +.+.+-+-...++|-+|.|+||.+.+++-.
T Consensus       157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpags  202 (213)
T COG4136         157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGS  202 (213)
T ss_pred             eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence                            444555566688999999999999887543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.83  E-value=1.3e-21  Score=160.84  Aligned_cols=151  Identities=13%  Similarity=0.084  Sum_probs=95.1

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----ccccccc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----RVHADII   99 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----~~~~~~~   99 (199)
                      ..|+++|++++|++.  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.+ ..++..    .......
T Consensus        11 ~~l~i~~l~~~~~~~--~il~~-isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~i~~v   86 (257)
T PRK11247         11 TPLLLNAVSKRYGER--TVLNQ-LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAPLAEAREDTRLM   86 (257)
T ss_pred             CcEEEEEEEEEECCc--ceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE-EECCEEHHHhhCceEEE
Confidence            459999999999754  79999 999999999999999999999999999999887654433 222211    0000111


Q ss_pred             cCC-CCCC-CchHHHH--------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640         100 VPR-GGEN-CVAIDLI--------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus       100 ~~~-~~~~-~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      ... .... ....+.+        ...+...+.   ...+....+..+.+|||||+||++||||++.             
T Consensus        87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~  163 (257)
T PRK11247         87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALA---AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA  163 (257)
T ss_pred             ecCccCCCCCcHHHHHHhcccchHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            111 0100 0000110        011111111   1222223344567899999999999999976             


Q ss_pred             --------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                              +.+.+.+....-+.++|.++||.+.
T Consensus       164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~  196 (257)
T PRK11247        164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                    4444555444335778999998763

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.83  E-value=1.3e-21  Score=156.24  Aligned_cols=149  Identities=14%  Similarity=0.142  Sum_probs=91.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~   98 (199)
                      ++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....       ....
T Consensus         1 l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~i~~   76 (213)
T cd03259           1 LELKGLSKTYGSV--RALDD-LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE-ILIDGRDVTGVPPERRNIGM   76 (213)
T ss_pred             CeeeeeEEEeCCe--eeecc-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcCcCchhhccEEE
Confidence            4689999999764  79999 99999999999999999999999999999988665433 333321100       0000


Q ss_pred             -ccCCCCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 -IVPRGGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 -~~~~~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                       ......... ...+.+              .+.+.+.+.   ...+....+..+.+|||||+||++||||++.      
T Consensus        77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll  153 (213)
T cd03259          77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE---LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL  153 (213)
T ss_pred             EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence             000000000 000110              011111111   1223222344567899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+....-+.++|.++||.+.
T Consensus       154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  193 (213)
T cd03259         154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE  193 (213)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence                           4444444433225678999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.83  E-value=1.5e-21  Score=156.59  Aligned_cols=151  Identities=13%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      ++++||++.|++.  ..+++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...          
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~-isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~   79 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKG-VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE-VLFNGQSLSKLSSNERAK   79 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcCHhHHHH
Confidence            5789999999642  1369999 99999999999999999999999999999988765433 33322110          


Q ss_pred             ---cccccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          94 ---VHADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        94 ---~~~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                         ......... ....... .+.+              .+.+.+.+.   ...++...+..+.+|||||+||++||||+
T Consensus        80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral  156 (221)
T TIGR02211        80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE---KVGLEHRINHRPSELSGGERQRVAIARAL  156 (221)
T ss_pred             HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence               001111111 1111101 1111              011111111   12233333445678999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +.                     +.+.+.+...+-+.+.|.++||.+.
T Consensus       157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~  204 (221)
T TIGR02211       157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL  204 (221)
T ss_pred             hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            75                     4444544444335678999998753

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.83  E-value=1.5e-21  Score=157.27  Aligned_cols=65  Identities=18%  Similarity=0.111  Sum_probs=55.4

Q ss_pred             cccccccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          18 KRDILARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        18 ~~~~~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ..+...+.++++|++++|++. ..+++++ +|+++++|++++|+||||||||||+++|+|.+.+..+
T Consensus         4 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   69 (226)
T cd03248           4 APDHLKGIVKFQNVTFAYPTRPDTLVLQD-VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG   69 (226)
T ss_pred             CCCCcCceEEEEEEEEEeCCCCCCccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence            345566679999999999753 2369999 9999999999999999999999999999998866543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.83  E-value=1.8e-21  Score=158.05  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++||+++|++. ++++++ +||++.+|++++|+||||||||||+++|+|.+.+..+
T Consensus         1 l~~~~l~~~~~~~-~~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256           1 IEVENLSKTYPNG-KKALKD-VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             CEEeeEEEecCCc-cEEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            4689999999751 379999 9999999999999999999999999999998866543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.83  E-value=1.7e-21  Score=158.47  Aligned_cols=56  Identities=25%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|+.. ++++++ +||++.+|++++|+||||||||||+++|+|.+.+..+
T Consensus         2 l~~~~l~~~~~~~-~~il~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (243)
T TIGR02315         2 LEVENLSKVYPNG-KQALKN-INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG   57 (243)
T ss_pred             eEEEeeeeecCCC-cceeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            5789999999722 379999 9999999999999999999999999999998866543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.83  E-value=1.4e-21  Score=156.69  Aligned_cols=149  Identities=14%  Similarity=0.109  Sum_probs=92.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~   97 (199)
                      ++++||++.|++..+++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...        ....
T Consensus         1 l~~~~l~~~~~~~~~~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDD-LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT-AYINGYSIRTDRKAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCCCceeecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccchHHHhhhEE
Confidence            56899999997522479999 99999999999999999999999999999988765443 32222110        0001


Q ss_pred             cccCC-CCCCCch-HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-GGENCVA-ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~~~~~~~-~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ..... ....... .+              ...+.+.+.+.   ...++...+....+|||||+||++||||++.     
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  155 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLR---VLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL  155 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            11111 0010000 00              00111111111   1233333344567899999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                      +.+.+.+...+  .+.|.++||.+.
T Consensus       156 llDEP~~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~  194 (220)
T cd03263         156 LLDEPTSGLDPASRRAIWDLILEVRKG--RSIILTTHSMDE  194 (220)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHhcC--CEEEEEcCCHHH
Confidence                            55555555443  678999998763

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.83  E-value=2.4e-21  Score=154.42  Aligned_cols=149  Identities=12%  Similarity=0.066  Sum_probs=91.6

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cccc
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHAD   97 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~~   97 (199)
                      +++|++++|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...         ....
T Consensus         1 ~~~~l~~~~~~~~~~il~~-vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~   78 (211)
T cd03225           1 ELKNLSFSYPDGARPALDD-ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE-VLVDGKDLTKLSLKELRRKVG   78 (211)
T ss_pred             CceeEEEecCCCCeeeecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEEcccCCHHHHHhhce
Confidence            4789999997622379999 99999999999999999999999999999988765433 33322110         0001


Q ss_pred             c-ccCCC--CCCCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          98 I-IVPRG--GENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        98 ~-~~~~~--~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      . .....  .......+.+              ...+.+.+.   ...+....+..+.+|||||+||++||||++.    
T Consensus        79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  155 (211)
T cd03225          79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE---LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI  155 (211)
T ss_pred             EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            1 11100  0000000111              111111111   1122222344567899999999999999975    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                       +.+.+.+.... +.++|+++||.+.
T Consensus       156 lllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~  196 (211)
T cd03225         156 LLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDL  196 (211)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence                             44445444433 5788999998763

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.83  E-value=1.8e-21  Score=155.38  Aligned_cols=149  Identities=13%  Similarity=0.076  Sum_probs=92.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      ++++|++++|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...            
T Consensus         2 l~~~~l~~~~~~~-~~il~~-is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~   78 (214)
T TIGR02673         2 IEFHNVSKAYPGG-VAALHD-VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ-VRIAGEDVNRLRGRQLPLLR   78 (214)
T ss_pred             EEEEeeeEEeCCC-ceeecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcccCCHHHHHHHH
Confidence            5789999999522 379999 99999999999999999999999999999988665433 33332110            


Q ss_pred             ccccccc-CCCCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          94 VHADIIV-PRGGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        94 ~~~~~~~-~~~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ....... ....... ...+.+              .+.+.+.+.   ...+....+..+.+|||||+||++||||++. 
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (214)
T TIGR02673        79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR---QVGLEHKADAFPEQLSGGEQQRVAIARAIVNS  155 (214)
T ss_pred             hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            0001111 1010100 000111              111111111   1122222344567899999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+.... +.+.|.++||.+.
T Consensus       156 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~  199 (214)
T TIGR02673       156 PPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSL  199 (214)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence                                45555554332 6788999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.83  E-value=1.9e-21  Score=155.29  Aligned_cols=147  Identities=12%  Similarity=0.083  Sum_probs=90.0

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----cccccc-ccC
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----RVHADI-IVP  101 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----~~~~~~-~~~  101 (199)
                      +++|++++|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++..    ...... ...
T Consensus         1 ~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~i~~v~q~   76 (213)
T cd03235           1 EVEDLTVSYGGH--PVLED-VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQR   76 (213)
T ss_pred             CcccceeEECCE--Eeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCE-EEECCccHHHHHhheEEeccc
Confidence            478999999754  79999 99999999999999999999999999999988765433 3222210    000000 000


Q ss_pred             CCC---CCCchH------------------HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640         102 RGG---ENCVAI------------------DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus       102 ~~~---~~~~~~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      ...   ......                  +...+.+...+.   ...++...+..+.+|||||+||++||||+..    
T Consensus        77 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  153 (213)
T cd03235          77 RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALE---RVGLSELADRQIGELSGGQQQRVLLARALVQDPDL  153 (213)
T ss_pred             cccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHH---HcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            000   000000                  011111111111   1122222234567899999999999999975    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                       +.+.+.+... -+.++|.++||.+.
T Consensus       154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~  194 (213)
T cd03235         154 LLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGL  194 (213)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence                             4445554433 25778999998764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.83  E-value=1.8e-21  Score=178.65  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=102.4

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe----------eeeecccchhc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW----------VTLLSMDSFYR   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~----------~~~i~~d~~~~   93 (199)
                      ..++++||++.|++. ++++++ +||++++|++++|+||||||||||+++|+|++.+..          +++++++.+..
T Consensus       450 ~~i~~~nv~~~~~~~-~~il~~-isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~  527 (659)
T TIGR00954       450 NGIKFENIPLVTPNG-DVLIES-LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT  527 (659)
T ss_pred             CeEEEEeeEEECCCC-Ceeeec-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence            359999999999643 379999 999999999999999999999999999999875532          33344443211


Q ss_pred             ccc---ccccCCCC----CCCchHHHHHHHHHHHHhcCceeecCCceee---ecceecCCeeeeeeEEeccch-------
Q psy9640          94 VHA---DIIVPRGG----ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY---EGKRCAVSKICGVSILRAGET-------  156 (199)
Q Consensus        94 ~~~---~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~g~~lSgGq~QrvaiaRA~~~-------  156 (199)
                      ...   .+......    ......+.+.+.+ +........+.|.++++   .+.+|||||+||++||||++.       
T Consensus       528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l-~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illL  606 (659)
T TIGR00954       528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL-DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAIL  606 (659)
T ss_pred             CcCHHHHHhcCCChhhhhccCCCHHHHHHHH-HHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            100   00010000    0111223444444 33322222344555555   456899999999999999976       


Q ss_pred             ----------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ----------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                ..+.+.+.+.+.+.++|.++|+.+.+
T Consensus       607 DEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~  642 (659)
T TIGR00954       607 DECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW  642 (659)
T ss_pred             eCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH
Confidence                      44445555555578889999988753

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.83  E-value=2.1e-21  Score=156.58  Aligned_cols=57  Identities=23%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++++|++++|++. ++++++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus         2 ~l~~~~l~~~~~~~-~~~l~~-isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (229)
T cd03254           2 EIEFENVNFSYDEK-KPVLKD-INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG   58 (229)
T ss_pred             eEEEEEEEEecCCC-Cccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            57899999999742 369999 9999999999999999999999999999998866543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.83  E-value=3e-21  Score=148.88  Aligned_cols=132  Identities=11%  Similarity=0.002  Sum_probs=86.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE  105 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~  105 (199)
                      ++++|++++|++. ++++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++. . ...........
T Consensus         1 i~~~~~~~~~~~~-~~~l~~-i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~-~-~i~~~~q~~~~   75 (166)
T cd03223           1 IELENLSLATPDG-RVLLKD-LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI-GMPEG-E-DLLFLPQRPYL   75 (166)
T ss_pred             CEEEEEEEEcCCC-Ceeeec-CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE-EECCC-c-eEEEECCCCcc
Confidence            4689999999643 479999 999999999999999999999999999999887654433 33221 0 01111111101


Q ss_pred             CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------hHHHHHhhcccc
Q psy9640         106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------MEQAVHDVCKDI  168 (199)
Q Consensus       106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------~~~~l~~~~p~~  168 (199)
                      ..   .-+.+.+    ...           .+.+|||||+||++||||++.                 ..+.+.+.+.+.
T Consensus        76 ~~---~tv~~nl----~~~-----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~  137 (166)
T cd03223          76 PL---GTLREQL----IYP-----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL  137 (166)
T ss_pred             cc---ccHHHHh----hcc-----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence            01   1122222    100           245899999999999999975                 233333333333


Q ss_pred             ceeEEEEEeCCC
Q psy9640         169 RIGKILIQTNKA  180 (199)
Q Consensus       169 ~~~~~~~~~~~~  180 (199)
                      ..+.|.++||.+
T Consensus       138 ~~tiiivsh~~~  149 (166)
T cd03223         138 GITVISVGHRPS  149 (166)
T ss_pred             CCEEEEEeCChh
Confidence            577899999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.83  E-value=2.4e-21  Score=156.70  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=50.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|++...+++++ ++|++++|++++|+||||||||||+++|+|.+.+..+
T Consensus         1 i~~~~l~~~~~~~~~~~l~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRD-ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG   57 (234)
T ss_pred             CEEEEEEEEeCCCCccceee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence            46899999997543468999 9999999999999999999999999999999876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=1.7e-21  Score=162.53  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=94.2

Q ss_pred             cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ++++||++.|++.   .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....        
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~-i~~~g~~i~~~~~~~~~   80 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHD-VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT-VTVDDITITHKTKDKYI   80 (286)
T ss_pred             EEEEEEEEEECCCCccccCceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchH
Confidence            6899999999642   2469999 99999999999999999999999999999988765543 333322110        


Q ss_pred             -----ccccccCC---CCCCC--------------chHHHHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEE
Q psy9640          95 -----HADIIVPR---GGENC--------------VAIDLIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        95 -----~~~~~~~~---~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrvaia  151 (199)
                           ........   .....              ...+...+.+.+.+.   .+.+. ...+..+.+|||||+||++||
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~LSgGq~qrv~la  157 (286)
T PRK13646         81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLM---DLGFSRDVMSQSPFQMSGGQMRKIAIV  157 (286)
T ss_pred             HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HcCCChhhhhCCcccCCHHHHHHHHHH
Confidence                 00111110   00000              000111111111111   12332 222446789999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||++.                     +.+.+.++....+.+.|.++||.+
T Consensus       158 raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~  207 (286)
T PRK13646        158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN  207 (286)
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            99975                     445555554444678899999765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=2.9e-21  Score=156.33  Aligned_cols=152  Identities=14%  Similarity=0.031  Sum_probs=94.4

Q ss_pred             Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      -++++||+++|++..  +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++...         
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~   82 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHN-VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSSAAKA   82 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEe-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCCHHHHH
Confidence            378999999996532  469999 9999999999999999999999999999998866543 333332110         


Q ss_pred             ----cccccccCC-CCCCC-chHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640          94 ----VHADIIVPR-GGENC-VAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        94 ----~~~~~~~~~-~~~~~-~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                          ......... ..... ...+.              ..+.+.+.+.   ...++...+..+.+|||||+||++||||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgG~~qrl~la~a  159 (233)
T PRK11629         83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLA---AVGLEHRANHRPSELSGGERQRVAIARA  159 (233)
T ss_pred             HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence                000111111 11100 00011              1111111111   1223333344567899999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ++.                     +.+.+.+....-+.+.|.++||.+.
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~  208 (233)
T PRK11629        160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL  208 (233)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            975                     4444445443335788999998764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=2e-21  Score=163.50  Aligned_cols=57  Identities=19%  Similarity=0.215  Sum_probs=50.4

Q ss_pred             cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      |+++|++++|++..   .++|++ +||++++|++++|+|+||||||||+++|+|++.+..+
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~-vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G   62 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDN-VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG   62 (305)
T ss_pred             EEEEEEEEEECCCCCccccceee-eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            78999999997532   359999 9999999999999999999999999999999877553

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.82  E-value=2.4e-21  Score=154.61  Aligned_cols=148  Identities=14%  Similarity=0.128  Sum_probs=91.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~   98 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....       ....
T Consensus         1 i~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-v~~~g~~~~~~~~~~~~i~~   76 (213)
T cd03301           1 VELENVTKRFGNV--TALDD-LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR-IYIGGRDVTDLPPKDRDIAM   76 (213)
T ss_pred             CEEEeeEEEECCe--eeeec-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCCcccceEEE
Confidence            4689999999764  79999 99999999999999999999999999999988665433 333221100       0001


Q ss_pred             ccCC-CCCCCch---------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IVPR-GGENCVA---------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~~~-~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .... .......               .+...+.+.+.+.   ...+....+..+.+|||||+||++||||+..      
T Consensus        77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll  153 (213)
T cd03301          77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE---LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL  153 (213)
T ss_pred             EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            0000 0000000               0111111111111   1122222344567899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                     +.+.+.+....-+.++|.++||..
T Consensus       154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~  192 (213)
T cd03301         154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV  192 (213)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence                           444444443333578899999865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.82  E-value=2.9e-21  Score=154.16  Aligned_cols=57  Identities=25%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      ++++|+++.|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+.
T Consensus         1 l~~~~l~~~~~~~-~~~l~~-~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (214)
T cd03292           1 IEFINVTKTYPNG-TAALDG-INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT   57 (214)
T ss_pred             CEEEEEEEEeCCC-ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4689999999643 379999 99999999999999999999999999999988765443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.82  E-value=3.7e-21  Score=155.79  Aligned_cols=55  Identities=22%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219           1 LEVRGLTKRFGGL--VALDD-VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             CeeeeeEEEECCE--EEecC-ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            4689999999754  79999 9999999999999999999999999999998866543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.82  E-value=3.9e-21  Score=155.30  Aligned_cols=147  Identities=15%  Similarity=0.137  Sum_probs=91.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~   95 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...          ..
T Consensus         1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~   76 (232)
T cd03218           1 LRAENLSKRYGKR--KVVNG-VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK-ILLDGQDITKLPMHKRARLG   76 (232)
T ss_pred             CeEEEEEEEeCCE--Eeecc-ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEecccCCHhHHHhcc
Confidence            4689999999754  79999 99999999999999999999999999999988765443 32222110          00


Q ss_pred             cccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          96 ADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ....... ....... .+.+              ...+...+.   ...+....+..+.+|||||+||++||||++.   
T Consensus        77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  153 (232)
T cd03218          77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLE---EFHITHLRKSKASSLSGGERRRVEIARALATNPK  153 (232)
T ss_pred             EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            0111111 1100000 0100              011111111   1223333344677899999999999999975   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                        +.+.+.+.... +.+.|.++||.+
T Consensus       154 llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~  194 (232)
T cd03218         154 FLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVR  194 (232)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence                              44445444332 567899999875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.82  E-value=2.6e-21  Score=156.91  Aligned_cols=150  Identities=11%  Similarity=0.076  Sum_probs=93.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------ccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------HAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~~~   97 (199)
                      ++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....        ...
T Consensus         2 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~i~~~~~~~~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYGAR--RALDD-VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ-ISVAGHDLRRAPRAALARLG   77 (236)
T ss_pred             EEEEeeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcccCChhhhhhEE
Confidence            5789999999754  79999 99999999999999999999999999999988765443 333321100        000


Q ss_pred             ccc-CCCC-CCCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIV-PRGG-ENCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~-~~~~-~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ... .... ......+.              ....+.+.+.   ...+....+..+.+|||||+||++||||++.     
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  154 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLA---RLGLAERADDKVRELNGGHRRRVEIARALLHRPALL  154 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            100 1111 00000011              1111111111   1223333345677999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                      +.+.+.+....-+.+.|.++||.+.+
T Consensus       155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~  196 (236)
T TIGR03864       155 LLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI  196 (236)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH
Confidence                            44455554322256789999987654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.82  E-value=2.8e-21  Score=154.72  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=93.0

Q ss_pred             cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------c
Q psy9640          26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------H   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~   95 (199)
                      ++++|+++.|++..  .+++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....        .
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~-~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~   79 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDG-VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF-ATVDGFDVVKEPAEARRR   79 (218)
T ss_pred             eEEEEEEEecCCCCccceeecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCce-EEECCEEcccCHHHHHhh
Confidence            57899999997532  269999 99999999999999999999999999999988665433 333321110        0


Q ss_pred             cccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          96 ADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ....... ..... ...+.+              .+.+.+.+.   ...++...+..+.+|||||+||++||||++.   
T Consensus        80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (218)
T cd03266          80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELAD---RLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP  156 (218)
T ss_pred             EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence            1111111 11110 011111              111111111   1223332344677899999999999999975   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                        +.+.+.+.... +.++|.++||.+.
T Consensus       157 illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~  198 (218)
T cd03266         157 VLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQE  198 (218)
T ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence                              44555554332 6788999998763

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=2.8e-21  Score=158.68  Aligned_cols=149  Identities=16%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----ccccccC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----HADIIVP  101 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----~~~~~~~  101 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....    .......
T Consensus         2 l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q   77 (255)
T PRK11248          2 LQISHLYADYGGK--PALED-INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQ   77 (255)
T ss_pred             EEEEEEEEEeCCe--eeEee-eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCCCCCcEEEEeC
Confidence            6789999999753  79999 99999999999999999999999999999988765433 322221100    0000000


Q ss_pred             C-CCCCCch-HHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640         102 R-GGENCVA-IDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus       102 ~-~~~~~~~-~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                      . ....... .+.              ..+.+.+.+.   ...++...+..+.+|||||+||++||||++.         
T Consensus        78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE  154 (255)
T PRK11248         78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK---KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE  154 (255)
T ss_pred             CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            0 0000000 000              0111111111   1222222344577899999999999999975         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                  +.+.+.+....-+.++|.++||.+.
T Consensus       155 Pt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~  191 (255)
T PRK11248        155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE  191 (255)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                        4444444433335678999998763

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.82  E-value=3e-21  Score=156.79  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=49.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|++.  ++|++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus         3 l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296           3 IEVRNVSKRFGDF--VALDD-VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             EEEEeEEEEECCE--Eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            6789999999764  79999 9999999999999999999999999999998876543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=2.4e-21  Score=161.21  Aligned_cols=153  Identities=17%  Similarity=0.119  Sum_probs=96.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--eeecccchhcc--------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--TLLSMDSFYRV--------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--~~i~~d~~~~~--------   94 (199)
                      -++++|+++.|++..++++++ +||++.+|++++|+|+||||||||+++|+|++.+...  |.+..++....        
T Consensus         5 ~l~i~~l~~~~~~~~~~~l~~-v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKPALND-ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             eEEEEEEEEEcCCCCccceee-EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            488999999997543469999 9999999999999999999999999999999877652  44433332110        


Q ss_pred             -ccccccCC---CCCCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          95 -HADIIVPR---GGENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 -~~~~~~~~---~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ........   ........+              ...+.+...+.   .+.+....+..+.+|||||+||++||||++.
T Consensus        84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LS~G~~qrv~laral~~  160 (282)
T PRK13640         84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA---DVGMLDYIDSEPANLSGGQKQRVAIAGILAV  160 (282)
T ss_pred             hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHH---HCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence             00110000   000000001              11111111111   1223223344677999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.++..+.+.++|.++||.+.
T Consensus       161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  206 (282)
T PRK13640        161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE  206 (282)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                                 5555555554446788999998653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=2.9e-21  Score=160.53  Aligned_cols=152  Identities=14%  Similarity=0.117  Sum_probs=95.7

Q ss_pred             Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      -++++|++++|++. ..++|++ +||++++|++++|+|+||||||||+++|+|++.+..+. +..++....         
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~   81 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLND-VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ-IIIDGDLLTEENVWDIRH   81 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECCcCcHHHHHh
Confidence            37899999999642 2469999 99999999999999999999999999999988765443 323322110         


Q ss_pred             ccccccCCC---CCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 HADIIVPRG---GENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~~~~~~---~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      .........   ....              ...+...+.+.+.+.   .+.+....+..+.+|||||+||++||||+.. 
T Consensus        82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~  158 (279)
T PRK13650         82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALE---LVGMQDFKEREPARLSGGQKQRVAIAGAVAMR  158 (279)
T ss_pred             hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHH---HCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            000100000   0000              001111111111111   1123222344567999999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.++..+.+.+.|.++||.+.
T Consensus       159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~  203 (279)
T PRK13650        159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE  203 (279)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                                5555666655446788999998653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.82  E-value=4.3e-21  Score=161.24  Aligned_cols=148  Identities=13%  Similarity=0.050  Sum_probs=94.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~   96 (199)
                      -++++|++++|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...        ...
T Consensus         4 ~i~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYGDK--VVVND-LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGK-ITVLGEPVPSRARLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeCCe--EEEcc-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECcccHHHHhhcE
Confidence            47899999999764  79999 99999999999999999999999999999988765443 33322110        000


Q ss_pred             cc-ccCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 DI-IVPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~~-~~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      .. ........... .+.+              ...+...+   ....++...+..+.+|||||+||++||||++.    
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll---~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  156 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRVALLSGGMKRRLTLARALINDPQL  156 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            11 11111110001 1111              11111111   12233444455677999999999999999975    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       +.+.+.+... -+.+.|.++||.+
T Consensus       157 llLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~  196 (303)
T TIGR01288       157 LILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME  196 (303)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence                             4444444432 2678899999765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.82  E-value=3.3e-21  Score=153.58  Aligned_cols=148  Identities=16%  Similarity=0.154  Sum_probs=91.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----ccccc-c
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----VHADI-I   99 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----~~~~~-~   99 (199)
                      ++++|+++.|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+.. |.+..++...     ..... .
T Consensus         1 l~~~~l~~~~~~~--~~l~~-v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~i~~~~   76 (210)
T cd03269           1 LEVENVTKRFGRV--TALDD-ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS-GEVLFDGKPLDIAARNRIGYLP   76 (210)
T ss_pred             CEEEEEEEEECCE--EEEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCCchhHHHHccEEEec
Confidence            4689999999754  79999 999999999999999999999999999999876554 3333333211     00011 1


Q ss_pred             cCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640         100 VPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus       100 ~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                      .......... .+.+              .+.+.+.+.   ...++...+..+.+|||||+||++||||++.        
T Consensus        77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD  153 (210)
T cd03269          77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE---RLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD  153 (210)
T ss_pred             cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH---HcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            1111110000 0110              111111111   1122222334567899999999999999975        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                   +.+.+.+.... +.++|.++||...
T Consensus       154 EP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~  190 (210)
T cd03269         154 EPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMEL  190 (210)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHH
Confidence                         44444444332 5688999998763

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.82  E-value=3.4e-21  Score=159.32  Aligned_cols=151  Identities=14%  Similarity=0.104  Sum_probs=94.6

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      +.-++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...         
T Consensus         5 ~~~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~   80 (269)
T PRK11831          5 ANLVDMRGVSFTRGNR--CIFDN-ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE-ILFDGENIPAMSRSRLY   80 (269)
T ss_pred             cceEEEeCeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEccccChhhHH
Confidence            3458999999999754  79999 99999999999999999999999999999988765433 33332110         


Q ss_pred             ---cccccccCC-CCCCCch-HHHHH---------------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640          94 ---VHADIIVPR-GGENCVA-IDLIV---------------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        94 ---~~~~~~~~~-~~~~~~~-~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                         ......... ....... .+.+.               ..+...+   ..+.+....+..+.+|||||+||++||||
T Consensus        81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l---~~~gl~~~~~~~~~~LSgGq~qrv~lara  157 (269)
T PRK11831         81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKL---EAVGLRGAAKLMPSELSGGMARRAALARA  157 (269)
T ss_pred             HHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHH---HHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               001111111 1111101 11111               0110111   11223333344677999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ++.                     +.+.+.+....-+.++|+++||.+
T Consensus       158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~  205 (269)
T PRK11831        158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP  205 (269)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence            975                     445555554433577899999854

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.82  E-value=5.6e-21  Score=153.96  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++++||++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+
T Consensus         1 i~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260           1 IELRDLNVYYGDK--HALKD-ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CEEEEEEEEcCCc--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5689999999764  79999 99999999999999999999999999999998

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.82  E-value=3.7e-21  Score=153.38  Aligned_cols=146  Identities=14%  Similarity=0.088  Sum_probs=91.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~   97 (199)
                      ++++|+++.|++.  +++++ +||++++| +++|+||||||||||+++|+|++.+..+. +..++...        ....
T Consensus         1 i~~~~~~~~~~~~--~~l~~-vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYGKK--RALDG-VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT-IRIDGQDVLKQPQKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEECCE--EEEcc-eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCCccccchHHHHhheE
Confidence            4689999999764  79999 99999999 99999999999999999999988765443 33332110        0001


Q ss_pred             ccc-CCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIV-PRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~-~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ... ......... .+.+              .+.+...+.   ...++...+..+.+|||||+||++||||+..     
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  152 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE---LVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL  152 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH---HCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            111 111100000 0111              111111111   1223333345677899999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                      +.+.+.+...  +.+.|.++||.+.
T Consensus       153 llDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~  191 (211)
T cd03264         153 IVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVED  191 (211)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHH
Confidence                            4445555443  3678999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.82  E-value=3.6e-21  Score=152.67  Aligned_cols=150  Identities=11%  Similarity=0.018  Sum_probs=92.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~   97 (199)
                      ++++|+++.|++.  .++++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++...        ....
T Consensus         1 l~i~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~   76 (201)
T cd03231           1 LEADELTCERDGR--ALFSG-LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV-LLNGGPLDFQRDSIARGLL   76 (201)
T ss_pred             CEEEEEEEEeCCc--eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEecccccHHhhhheE
Confidence            4689999999764  78999 999999999999999999999999999999887654433 2222110        0000


Q ss_pred             ccc-CCCCC-CCchHHHH--------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640          98 IIV-PRGGE-NCVAIDLI--------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------  156 (199)
Q Consensus        98 ~~~-~~~~~-~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------  156 (199)
                      ... ..... +....+.+        .+.+...+.   ...++...+....+|||||+||++||||++.           
T Consensus        77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt  153 (201)
T cd03231          77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALA---RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT  153 (201)
T ss_pred             EeccccccCCCcCHHHHHHhhcccccHHHHHHHHH---HcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            000 00000 00000100        011111111   1122222244567899999999999999975           


Q ss_pred             ----------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640         157 ----------MEQAVHDVCKDIRIGKILIQTNKATDE  183 (199)
Q Consensus       157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~~~  183 (199)
                                +.+.+.+... -+.+.|.++||...+.
T Consensus       154 ~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~  189 (201)
T cd03231         154 TALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLS  189 (201)
T ss_pred             CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhh
Confidence                      4444444332 2667899999887654

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.82  E-value=7.4e-21  Score=151.30  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=92.0

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~   94 (199)
                      ..++++|++++|+....+++++ +||++.+|++++|+|+||||||||+++|+|++.+..+. +..++...         .
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~-isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~   82 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKN-VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK-IEIDGIDISTIPLEDLRS   82 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccC-ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEhHHCCHHHHHh
Confidence            3589999999997543479999 99999999999999999999999999999988665433 33332110         0


Q ss_pred             ccccc-cCCCCCCC-----------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          95 HADII-VPRGGENC-----------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        95 ~~~~~-~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      ..... ........           ...+.+.+.+    .          .+..+..|||||+||++||||++.      
T Consensus        83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l----~----------~~~~~~~LS~G~~qrv~laral~~~p~lll  148 (207)
T cd03369          83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL----R----------VSEGGLNLSQGQRQLLCLARALLKRPRVLV  148 (207)
T ss_pred             hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHh----h----------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence            00010 00000000           0011111111    1          233567899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+...  +.+.|.++|+.+.
T Consensus       149 lDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~th~~~~  186 (207)
T cd03369         149 LDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRT  186 (207)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH
Confidence                           4555555532  5778999998764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.82  E-value=3.6e-21  Score=155.89  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=49.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|++++|++. +.++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 l~~~~l~~~~~~~-~~~l~~-i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   56 (236)
T cd03253           1 IEFENVTFAYDPG-RPVLKD-VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG   56 (236)
T ss_pred             CEEEEEEEEeCCC-Cceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            4688999999643 369999 9999999999999999999999999999998866544

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.82  E-value=4.4e-21  Score=152.25  Aligned_cols=145  Identities=11%  Similarity=0.059  Sum_probs=90.8

Q ss_pred             cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------------c
Q psy9640          28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------------V   94 (199)
Q Consensus        28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------------~   94 (199)
                      ++|+++.|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...             .
T Consensus         1 i~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~~   76 (206)
T TIGR03608         1 LKNISKKFGDK--IILDD-LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ-VYLNGKETPPLNSKKASKFRRE   76 (206)
T ss_pred             CcceEEEECCE--EEEec-eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccchhhHHHHHHh
Confidence            57999999754  79999 99999999999999999999999999999988765443 33332210             0


Q ss_pred             ccccccCC-CCCCCchH-H--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          95 HADIIVPR-GGENCVAI-D--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~~~~-~~~~~~~~-~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ........ ........ +              ...+.+.+.+.   ...+....+....+|||||+||++||||+..  
T Consensus        77 ~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p  153 (206)
T TIGR03608        77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE---KVGLNLKLKQKIYELSGGEQQRVALARAILKDP  153 (206)
T ss_pred             CeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            00111100 00100000 1              01111111111   1222233344567899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.+.... +.+.|.++|+.+
T Consensus       154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~  195 (206)
T TIGR03608       154 PLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPE  195 (206)
T ss_pred             CEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence                               55555555433 677899999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.82  E-value=7.1e-21  Score=150.51  Aligned_cols=148  Identities=9%  Similarity=-0.025  Sum_probs=91.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~   97 (199)
                      ++++|+++.|++.  +++++ +||++.+|++++|+||||||||||+++|+|.+.+..+. +..++...        ....
T Consensus         1 l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~   76 (198)
T TIGR01189         1 LAARNLACSRGER--MLFEG-LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE-VRWNGTALAEQRDEPHRNIL   76 (198)
T ss_pred             CEEEEEEEEECCE--EEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE-EEECCEEcccchHHhhhheE
Confidence            4689999999764  79999 99999999999999999999999999999988765443 33332210        0001


Q ss_pred             cccCCC-CCCC-chHHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640          98 IIVPRG-GENC-VAIDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus        98 ~~~~~~-~~~~-~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                      ...... .... ...+.+.          +.+.+.+.   ...+....+..+.+|||||+||++||||+..         
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  153 (198)
T TIGR01189        77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALA---AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE  153 (198)
T ss_pred             EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHH---HcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            111110 0000 0011110          01111111   1122222344567899999999999999975         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                  +.+.+.+.... +.++|.++|++..
T Consensus       154 Pt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~  189 (198)
T TIGR01189       154 PTTALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLG  189 (198)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEccccc
Confidence                        44444443222 5678999998854

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=3.7e-21  Score=159.49  Aligned_cols=149  Identities=11%  Similarity=0.032  Sum_probs=93.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++|+++.|+.. .+++++ +||++++|++++|+|+||||||||+++|+|++.+..+.+ ..++....         .
T Consensus         4 ~l~~~~l~~~~~~~-~~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~   80 (274)
T PRK13647          4 IIEVEDLHFRYKDG-TKALKG-LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV-KVMGREVNAENEKWVRSK   80 (274)
T ss_pred             eEEEEEEEEEeCCC-Ceeeee-EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEECCCCCHHHHHhh
Confidence            47899999999642 369999 999999999999999999999999999999887654433 22221110         0


Q ss_pred             cccccCC---CCCCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPR---GGENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~---~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .......   ........+              ...+.+...+.   .+.+....+..+.+|||||+||++||||++.  
T Consensus        81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p  157 (274)
T PRK13647         81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALK---AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP  157 (274)
T ss_pred             EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            0111110   000000001              11111111111   1122222344677999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.++... +.+.|.++||.+
T Consensus       158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~  199 (274)
T PRK13647        158 DVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVD  199 (274)
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence                               55555555433 678899999765

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=3e-21  Score=161.33  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ++++|++++|++.   ..++|++ +||++++|++++|+|+||||||||+++|+|++.+..+ .+..++....        
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~   80 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKKL   80 (290)
T ss_pred             EEEEEEEEEECCCCcccccceee-EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccchH
Confidence            7899999999642   1469999 9999999999999999999999999999998876543 3333332110        


Q ss_pred             -----ccccccCC---CCCCCc--------------hHHHHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEE
Q psy9640          95 -----HADIIVPR---GGENCV--------------AIDLIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        95 -----~~~~~~~~---~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrvaia  151 (199)
                           ........   ...+..              ..+...+.+.+.+.   .+.++ ...+..+.+|||||+||++||
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~LSgGq~qrv~lA  157 (290)
T PRK13634         81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIE---LVGLPEELLARSPFELSGGQMRRVAIA  157 (290)
T ss_pred             HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCChhhhhCCcccCCHHHHHHHHHH
Confidence                 00111110   000000              00011111111111   22343 223456779999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||++.                     +.+.+.+.....+.+.|.++||.+
T Consensus       158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~  207 (290)
T PRK13634        158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME  207 (290)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99975                     455555554544678899999865

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.82  E-value=4.7e-21  Score=155.47  Aligned_cols=57  Identities=16%  Similarity=0.206  Sum_probs=49.7

Q ss_pred             cccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|++. .++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~-i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   58 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKG-LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG   58 (238)
T ss_pred             CeEEEEEEecCCCCCccceec-eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence            4689999999653 2469999 9999999999999999999999999999998866543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.82  E-value=5.5e-21  Score=155.53  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=92.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------HA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~~   96 (199)
                      ++++|++++|++. +++|++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++....         ..
T Consensus         1 l~~~~l~~~~~~~-~~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i   77 (242)
T cd03295           1 IEFENVTKRYGGG-KKAVNN-LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVELRRKI   77 (242)
T ss_pred             CEEEEEEEEeCCc-ceEeee-eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHhhcce
Confidence            4689999999762 379999 9999999999999999999999999999998876543 3333221100         00


Q ss_pred             ccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCC--ceeeecceecCCeeeeeeEEeccch--
Q psy9640          97 DIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQ--GYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        97 ~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~--~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ...... ....... .+.+              ...+.+.+.   .+.++.  ..+..+.+|||||+||++||||++.  
T Consensus        78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p  154 (242)
T cd03295          78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLA---LVGLDPAEFADRYPHELSGGQQQRVGVARALAADP  154 (242)
T ss_pred             EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            111111 1110000 0111              111111111   123332  2244577899999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.+.....+.++|.++|+.+
T Consensus       155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~  197 (242)
T cd03295         155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID  197 (242)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence                               444444444433577899999876

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.82  E-value=5.4e-21  Score=156.47  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++||++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 i~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (252)
T TIGR03005         1 VRFSDVTKRFGIL--TVLDG-LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG   55 (252)
T ss_pred             CEEEEEEEEeCCe--eEEee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4689999999754  79999 9999999999999999999999999999998876544

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.82  E-value=4.2e-21  Score=157.35  Aligned_cols=147  Identities=10%  Similarity=0.087  Sum_probs=92.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee----------ecccchhcc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL----------LSMDSFYRV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~----------i~~d~~~~~   94 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+          ++++.....
T Consensus         4 ~l~~~~l~~~~~~~--~vl~~-vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~   80 (251)
T PRK09544          4 LVSLENVSVSFGQR--RVLSD-VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT   80 (251)
T ss_pred             EEEEeceEEEECCc--eEEEe-EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence            37899999999764  79999 999999999999999999999999999999887654322          222211000


Q ss_pred             cccccc-CCCCCC-CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640          95 HADIIV-PRGGEN-CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------  156 (199)
Q Consensus        95 ~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------  156 (199)
                      ...... ...... ....+.+.+.+ +.      +.+....+..+..|||||+||++||||++.                
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~~l-~~------~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~  153 (251)
T PRK09544         81 TLPLTVNRFLRLRPGTKKEDILPAL-KR------VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV  153 (251)
T ss_pred             ccChhHHHHHhccccccHHHHHHHH-HH------cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence            000000 000000 00111122222 11      122222234567899999999999999975                


Q ss_pred             -----hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                           +.+.+.+.....+.+.|.++||.+.
T Consensus       154 ~~~~~l~~~L~~~~~~~g~tiiivsH~~~~  183 (251)
T PRK09544        154 NGQVALYDLIDQLRRELDCAVLMVSHDLHL  183 (251)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                 4444555444336778999998763

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.82  E-value=5.1e-21  Score=152.25  Aligned_cols=148  Identities=14%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++...       .....
T Consensus         1 l~~~~l~~~~~~~--~~l~~-~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~   76 (208)
T cd03268           1 LKTNDLTKTYGKK--RVLDD-ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGA   76 (208)
T ss_pred             CEEEEEEEEECCe--EeEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEE
Confidence            4689999999654  79999 9999999999999999999999999999998876543 333333211       00111


Q ss_pred             ccCC-CCC-CCchHHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------
Q psy9640          99 IVPR-GGE-NCVAIDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------  156 (199)
Q Consensus        99 ~~~~-~~~-~~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------  156 (199)
                      .... ... +....+.+.          +.+...+.   ...+....+..+.+|||||+||++||||++.          
T Consensus        77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  153 (208)
T cd03268          77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD---VVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP  153 (208)
T ss_pred             ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHH---HcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            1111 111 101111110          01101111   1122222234567899999999999999975          


Q ss_pred             -----------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                 +.+.+.+... -+.+.|.++||.+.
T Consensus       154 t~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~  188 (208)
T cd03268         154 TNGLDPDGIKELRELILSLRD-QGITVLISSHLLSE  188 (208)
T ss_pred             cccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence                       4444444433 25678999998763

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=9e-21  Score=161.43  Aligned_cols=131  Identities=15%  Similarity=0.110  Sum_probs=97.7

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      ...+.++||+|.|... +++|++ +||+++.|+.++|+|+||+||||++++|..++++..+. +-.|+...         
T Consensus       260 ~g~v~F~~V~F~y~~~-r~iL~~-isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~-I~id~qdir~vtq~slR  336 (497)
T COG5265         260 LGAVAFINVSFAYDPR-RPILNG-ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS-ITIDGQDIRDVTQQSLR  336 (497)
T ss_pred             cceEEEEEEEeecccc-chhhcC-ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce-EEEcchhHHHhHHHHHH
Confidence            3458899999999765 589999 99999999999999999999999999999999876433 22332211         


Q ss_pred             -cccccccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          94 -VHADIIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 -~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ...-.+++...            ......+++..+++..-....+..+|++|++    .|-.|||||||||||||+++.
T Consensus       337 ~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk  416 (497)
T COG5265         337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK  416 (497)
T ss_pred             HHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence             11111111111            1123456777777666666778899999998    577899999999999999975

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.82  E-value=4.5e-21  Score=164.50  Aligned_cols=140  Identities=11%  Similarity=0.028  Sum_probs=90.6

Q ss_pred             eccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-------------cccccccc
Q psy9640          34 QYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-------------RVHADIIV  100 (199)
Q Consensus        34 ~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-------------~~~~~~~~  100 (199)
                      +|+..  .++++ +||++++|++++|+|+||||||||+++|+|++.+..+.+ ..++..             +....+.+
T Consensus         2 ~~~~~--~~l~~-vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~   77 (363)
T TIGR01186         2 KTGGK--KGVND-ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVF   77 (363)
T ss_pred             ccCCc--eeEEe-eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEE
Confidence            34443  68999 999999999999999999999999999999987765433 333211             11111111


Q ss_pred             CCC-CCCCch---------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640         101 PRG-GENCVA---------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus       101 ~~~-~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                      ... .....+               .+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||+..        
T Consensus        78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~---~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD  154 (363)
T TIGR01186        78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLK---LVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD  154 (363)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            111 110000               0111111212221   2344444455788999999999999999976        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                   +.+.+.++....+.+.|+++||.+
T Consensus       155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~  191 (363)
T TIGR01186       155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD  191 (363)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                         667777776666788899999765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.82  E-value=6.3e-21  Score=165.54  Aligned_cols=148  Identities=11%  Similarity=0.007  Sum_probs=92.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+||||||||||+|+|+|.+.+..+. +..++....         .
T Consensus         3 ~L~~~nls~~y~~~--~vL~~-vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~-I~l~G~~i~~~~~~~~~~~   78 (402)
T PRK09536          3 MIDVSDLSVEFGDT--TVLDG-VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT-VLVAGDDVEALSARAASRR   78 (402)
T ss_pred             eEEEeeEEEEECCE--EEEEe-eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE-EEECCEEcCcCCHHHHhcc
Confidence            37899999999764  79999 99999999999999999999999999999988765433 322221100         0


Q ss_pred             ccc-ccCCCCCCC-----------------ch--HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          96 ADI-IVPRGGENC-----------------VA--IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        96 ~~~-~~~~~~~~~-----------------~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                      ... .........                 ..  .....+.+.+.+.   .+.+....+....+|||||+||++||||++
T Consensus        79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le---~vgl~~~~~~~~~~LSgGerQRv~IArAL~  155 (402)
T PRK09536         79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTGVAQFADRPVTSLSGGERQRVLLARALA  155 (402)
T ss_pred             eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence            000 000000000                 00  0001111111111   122222224456689999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.++.. -+.++|.++||-+
T Consensus       156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~  200 (402)
T PRK09536        156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD  200 (402)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH
Confidence            6                     5555666554 3678899999754

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.81  E-value=7.7e-21  Score=159.96  Aligned_cols=149  Identities=11%  Similarity=0.020  Sum_probs=94.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VH   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~   95 (199)
                      .-++++|++++|++.  .+|++ +||++++|+++||+||||||||||+++|+|.+.+..+.+ ..++...        ..
T Consensus         6 ~~i~i~~l~k~~~~~--~~l~~-vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v-~i~G~~~~~~~~~~~~~   81 (306)
T PRK13537          6 APIDFRNVEKRYGDK--LVVDG-LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI-SLCGEPVPSRARHARQR   81 (306)
T ss_pred             ceEEEEeEEEEECCe--EEEec-ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEecccchHHHHhc
Confidence            358999999999754  79999 999999999999999999999999999999887765433 3322211        00


Q ss_pred             ccc-ccCCCCCCCchH-HHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          96 ADI-IVPRGGENCVAI-DLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~-~~~~~~~~~~~~-~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ... ......+..... +.+              ...+.+.+.   .+.+....+.....|||||+||++||||++.   
T Consensus        82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~  158 (306)
T PRK13537         82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLE---FAKLENKADAKVGELSGGMKRRLTLARALVNDPD  158 (306)
T ss_pred             EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence            111 111111111011 111              111111111   2233333455667899999999999999976   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                        +.+.+.+... -+.+.|+++|+.+
T Consensus       159 lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~  199 (306)
T PRK13537        159 VLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME  199 (306)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence                              4445555432 3678899998665

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.81  E-value=7.3e-21  Score=153.86  Aligned_cols=151  Identities=16%  Similarity=0.144  Sum_probs=93.0

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ++++|+++.|++.  .++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++....         
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~-~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~   79 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKD-VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKELRK   79 (233)
T ss_pred             eEEecceEEccCCCCceeeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHH
Confidence            6789999999653  1279999 9999999999999999999999999999999876543 3333322110         


Q ss_pred             ---ccccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          95 ---HADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        95 ---~~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                         ........ ....... .+.+              ...+.+.+.   ...++...+..+.+|||||+||++||||++
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~  156 (233)
T cd03258          80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE---LVGLEDKADAYPAQLSGGQKQRVGIARALA  156 (233)
T ss_pred             HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence               00111111 1110001 1111              011111111   122332234456789999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      .                     +.+.+.+.....+.++|.++||.+.
T Consensus       157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~  203 (233)
T cd03258         157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV  203 (233)
T ss_pred             cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            5                     3344444433335688999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=5.9e-21  Score=152.04  Aligned_cols=150  Identities=13%  Similarity=-0.008  Sum_probs=92.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------HADII   99 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------~~~~~   99 (199)
                      ++++|+++.|++.  .++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....      .....
T Consensus         3 l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~   78 (207)
T PRK13539          3 LEGEDLACVRGGR--VLFSG-LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-IKLDGGDIDDPDVAEACHYL   78 (207)
T ss_pred             EEEEeEEEEECCe--EEEec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeCcchhhHhhcEEe
Confidence            6889999999764  68999 99999999999999999999999999999987765433 333321100      00011


Q ss_pred             c-CCCCCCCch-HHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640         100 V-PRGGENCVA-IDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------  156 (199)
Q Consensus       100 ~-~~~~~~~~~-~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------  156 (199)
                      . ......... .+.+.          +.+.+.+.   ...+....+....+|||||+||++||||++.           
T Consensus        79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  155 (207)
T PRK13539         79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALE---AVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT  155 (207)
T ss_pred             cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHH---HcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            0 100000000 11110          00101111   1122222233456899999999999999975           


Q ss_pred             ----------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640         157 ----------MEQAVHDVCKDIRIGKILIQTNKATDE  183 (199)
Q Consensus       157 ----------~~~~l~~~~p~~~~~~~~~~~~~~~~~  183 (199)
                                +.+.+.+.... +.+.|.++|+.+..+
T Consensus       156 ~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~  191 (207)
T PRK13539        156 AALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLGLP  191 (207)
T ss_pred             ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchhhc
Confidence                      34444443322 678899999877554

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=1.1e-20  Score=156.03  Aligned_cols=133  Identities=15%  Similarity=0.089  Sum_probs=90.4

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc------------hhccccccccCCC------
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS------------FYRVHADIIVPRG------  103 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~------------~~~~~~~~~~~~~------  103 (199)
                      .++| +||+++.|++..|+|-||||||||+|++-++..|..+.++..+.            +++....+.+...      
T Consensus        43 Gv~~-~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          43 GVND-ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             eecc-ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            5789 99999999999999999999999999998888776554443221            1111111111110      


Q ss_pred             --CCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------
Q psy9640         104 --GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------  156 (199)
Q Consensus       104 --~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------  156 (199)
                        ..|        ...-++-.+...+++.   .+.+...-+..+.+|||||+|||.||||+..                 
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~---~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL  198 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALE---LVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL  198 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHH---HcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence              111        0111122222223332   3445444455788999999999999999975                 


Q ss_pred             ----hHHHHHhhccccceeEEEEEeC
Q psy9640         157 ----MEQAVHDVCKDIRIGKILIQTN  178 (199)
Q Consensus       157 ----~~~~l~~~~p~~~~~~~~~~~~  178 (199)
                          |.+.|+++...++=|.|||+||
T Consensus       199 IR~~mQdeLl~Lq~~l~KTIvFitHD  224 (386)
T COG4175         199 IRTEMQDELLELQAKLKKTIVFITHD  224 (386)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEEecC
Confidence                9999999999999999999996

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.81  E-value=6.9e-21  Score=151.87  Aligned_cols=148  Identities=14%  Similarity=0.109  Sum_probs=91.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------c
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------V   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------~   94 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...           .
T Consensus         1 l~~~~l~~~~~~~--~~l~~-~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~   76 (213)
T cd03262           1 IEIKNLHKSFGDF--HVLKG-IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT-IIIDGLKLTDDKKNINELRQ   76 (213)
T ss_pred             CEEEEEEEEECCe--EeecC-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccchhHHHHHh
Confidence            4689999999764  79999 99999999999999999999999999999988765433 33322111           0


Q ss_pred             ccccc-cCCCCCCCch-HHHH---------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 HADII-VPRGGENCVA-IDLI---------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~~-~~~~~~~~~~-~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ..... .......... .+.+               .+.+.+.+.   ...++...+..+.+|||||+||++||||++. 
T Consensus        77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  153 (213)
T cd03262          77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLE---KVGLADKADAYPAQLSGGQQQRVAIARALAMN  153 (213)
T ss_pred             cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHH---HcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence            00000 0100010000 0111               011111111   1122222344567899999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+... .+.++|+++||...
T Consensus       154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~  197 (213)
T cd03262         154 PKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGF  197 (213)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence                                4445554443 25678999998754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.81  E-value=5.4e-21  Score=153.43  Aligned_cols=148  Identities=12%  Similarity=0.104  Sum_probs=92.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~   95 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...          ..
T Consensus         1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~~~~   76 (222)
T cd03224           1 LEVENLNAGYGKS--QILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS-IRFDGRDITGLPPHERARAG   76 (222)
T ss_pred             CEEeeEEeecCCe--eEeee-eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCCCCHHHHHhcC
Confidence            5689999999754  79999 99999999999999999999999999999988765433 33332110          00


Q ss_pred             ccccc-CCCCCCCchH-HHH------------HHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          96 ADIIV-PRGGENCVAI-DLI------------VQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        96 ~~~~~-~~~~~~~~~~-~~~------------~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      ..... .......... +.+            ...+...+.   .+ .++...+..+.+|||||+||++||||++.    
T Consensus        77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  153 (222)
T cd03224          77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYE---LFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL  153 (222)
T ss_pred             eEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHH---HHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            01111 1111100000 100            001101111   11 12233345677899999999999999975    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                       +.+.+.+... .+.+.|.++||.+.
T Consensus       154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~  194 (222)
T cd03224         154 LLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARF  194 (222)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH
Confidence                             4555555433 35678999998763

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.81  E-value=9.9e-21  Score=146.76  Aligned_cols=135  Identities=19%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE  105 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~  105 (199)
                      ++++|++++|++...+++++ +++++++|++++|+|+||||||||+++|+|.+.+..+ .+..++......         
T Consensus         1 i~~~~l~~~~~~~~~~~l~~-~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~---------   69 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRN-VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQW---------   69 (173)
T ss_pred             CEEEEEEEEcCCCCCcceee-eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccC---------
Confidence            46899999997643469999 9999999999999999999999999999998876543 333333211000         


Q ss_pred             CCchHHHHHHHHHHHHhcCceeecCCceeeecc--eecCCeeeeeeEEeccch---------------------hHHHHH
Q psy9640         106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGK--RCAVSKICGVSILRAGET---------------------MEQAVH  162 (199)
Q Consensus       106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~--~lSgGq~QrvaiaRA~~~---------------------~~~~l~  162 (199)
                         ........+      ....+.+..+.....  -|||||+||++||||++.                     +.+.+.
T Consensus        70 ---~~~~~~~~i------~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~  140 (173)
T cd03246          70 ---DPNELGDHV------GYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA  140 (173)
T ss_pred             ---CHHHHHhhe------EEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence               000000000      000000000000000  089999999999999975                     445555


Q ss_pred             hhccccceeEEEEEeCCCC
Q psy9640         163 DVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       163 ~~~p~~~~~~~~~~~~~~~  181 (199)
                      +... -+.+.|.++||.+.
T Consensus       141 ~~~~-~~~tii~~sh~~~~  158 (173)
T cd03246         141 ALKA-AGATRIVIAHRPET  158 (173)
T ss_pred             HHHh-CCCEEEEEeCCHHH
Confidence            5433 26788999998753

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.81  E-value=7.8e-21  Score=147.94  Aligned_cols=138  Identities=14%  Similarity=0.110  Sum_probs=87.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-C
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-G  104 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-~  104 (199)
                      ++++|++++|++...+++++ +||++++|++++|+|+||||||||+++|+|...+..+ .+..++...........+. .
T Consensus         1 i~~~~~~~~~~~~~~~~l~~-i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKN-LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCCCccceEE-EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHHhhEE
Confidence            46889999997643469999 9999999999999999999999999999998766543 3333332110000000000 0


Q ss_pred             CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHh
Q psy9640         105 ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHD  163 (199)
Q Consensus       105 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~  163 (199)
                      +-..........+.+.+               +..|||||+||++||||++.                     +.+.+.+
T Consensus        79 ~~~q~~~~~~~tv~~~i---------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~  143 (178)
T cd03247          79 VLNQRPYLFDTTLRNNL---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE  143 (178)
T ss_pred             EEccCCeeecccHHHhh---------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            00000000000000000               56899999999999999975                     4455555


Q ss_pred             hccccceeEEEEEeCCCCC
Q psy9640         164 VCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       164 ~~p~~~~~~~~~~~~~~~~  182 (199)
                      ...  ..+.|.++||.+..
T Consensus       144 ~~~--~~tii~~sh~~~~~  160 (178)
T cd03247         144 VLK--DKTLIWITHHLTGI  160 (178)
T ss_pred             HcC--CCEEEEEecCHHHH
Confidence            532  56779999987643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.81  E-value=6.3e-21  Score=147.87  Aligned_cols=130  Identities=14%  Similarity=0.078  Sum_probs=85.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC--
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG--  103 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~--  103 (199)
                      ++++|++++|++.  +++++ ++|++.+|++++|+|+||||||||+++|+|.+.+..+ .+..++...........+.  
T Consensus         1 l~~~~l~~~~~~~--~~l~~-~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYGKK--TALDD-ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVKRRIG   76 (173)
T ss_pred             CEEEEEEEEECCe--eeeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhhccEE
Confidence            4688999999754  69999 9999999999999999999999999999998866543 3333332110000000000  


Q ss_pred             --CCCCchH--HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hH
Q psy9640         104 --GENCVAI--DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------ME  158 (199)
Q Consensus       104 --~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~  158 (199)
                        ..++.-+  ..+.+.+                     .|||||+||++||||+..                     +.
T Consensus        77 ~~~q~~~~~~~~tv~~~~---------------------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~  135 (173)
T cd03230          77 YLPEEPSLYENLTVRENL---------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW  135 (173)
T ss_pred             EEecCCccccCCcHHHHh---------------------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence              0000000  0111111                     189999999999999975                     55


Q ss_pred             HHHHhhccccceeEEEEEeCCCC
Q psy9640         159 QAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       159 ~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +.+.+.... +.+.|.++||.+.
T Consensus       136 ~~l~~~~~~-g~tiii~th~~~~  157 (173)
T cd03230         136 ELLRELKKE-GKTILLSSHILEE  157 (173)
T ss_pred             HHHHHHHHC-CCEEEEECCCHHH
Confidence            555555444 5678999998763

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=5.2e-21  Score=155.73  Aligned_cols=150  Identities=16%  Similarity=0.116  Sum_probs=92.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~   95 (199)
                      .++++|++++|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++...         ..
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~   78 (241)
T PRK14250          3 EIEFKEVSYSSFGK--EILKD-ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS-ILIDGVDIKTIDVIDLRRK   78 (241)
T ss_pred             eEEEEeEEEEeCCe--eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEhhhcChHHhhhc
Confidence            47899999999754  79999 99999999999999999999999999999988765433 33332110         00


Q ss_pred             cccccCCCCCCCchH-HHH----------HHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch-------
Q psy9640          96 ADIIVPRGGENCVAI-DLI----------VQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET-------  156 (199)
Q Consensus        96 ~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~-------  156 (199)
                      ...........+... +.+          ...+...+.   ...++. ..+..+.+|||||+||++||||++.       
T Consensus        79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  155 (241)
T PRK14250         79 IGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS---IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLL  155 (241)
T ss_pred             EEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHH---HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            000000000000000 000          001111111   122321 2234567899999999999999975       


Q ss_pred             --------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                    +.+.+.+....-+.++|.++||.+.
T Consensus       156 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~  194 (241)
T PRK14250        156 DEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ  194 (241)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence                          4445555443335678999998763

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=5.1e-21  Score=159.08  Aligned_cols=152  Identities=17%  Similarity=0.138  Sum_probs=95.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++||++.|+...+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++....         .
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i-~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKD-VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVWDVRRQ   82 (279)
T ss_pred             eEEEEEEEEEeCCCCccceee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCcHHHHhhh
Confidence            378999999997544579999 999999999999999999999999999999987654433 22221110         0


Q ss_pred             cccccCC---CCCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPR---GGENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~---~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .......   ...+.              .......+.+...+.   ...+....+..+.+|||||+||++||||++.  
T Consensus        83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p  159 (279)
T PRK13635         83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALR---QVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP  159 (279)
T ss_pred             eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHH---HcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            0000000   00000              000111111111111   1123333344667899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+....-+.+.|.++||.+.
T Consensus       160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~  203 (279)
T PRK13635        160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE  203 (279)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence                               5555555554446788999998663

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=4e-21  Score=152.67  Aligned_cols=151  Identities=10%  Similarity=-0.005  Sum_probs=93.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~   97 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...        ....
T Consensus         2 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~-v~~~g~~~~~~~~~~~~~~~   77 (204)
T PRK13538          2 LEARNLACERDER--ILFSG-LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE-VLWQGEPIRRQRDEYHQDLL   77 (204)
T ss_pred             eEEEEEEEEECCE--EEEec-ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEEcccchHHhhhheE
Confidence            5789999999764  79999 99999999999999999999999999999988765443 33332110        0000


Q ss_pred             cccCCC-CCCCch-HHHHH-----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640          98 IIVPRG-GENCVA-IDLIV-----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus        98 ~~~~~~-~~~~~~-~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                      ...... ...... .+.+.           +.+...+.   ...+....+..+..|||||+||++||||++.        
T Consensus        78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  154 (204)
T PRK13538         78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALA---QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD  154 (204)
T ss_pred             EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHH---HcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            000110 000000 01110           01111111   1122222244567899999999999999975        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCCCCCc
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKATDEP  184 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~  184 (199)
                                   +.+.+.+.. .-+.+.|.++||...++.
T Consensus       155 EPt~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        155 EPFTAIDKQGVARLEALLAQHA-EQGGMVILTTHQDLPVAS  194 (204)
T ss_pred             CCCccCCHHHHHHHHHHHHHHH-HCCCEEEEEecChhhhcc
Confidence                         333333332 225678999999887654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.81  E-value=1.1e-20  Score=154.27  Aligned_cols=56  Identities=21%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (250)
T PRK11264          3 AIEVKNLVKKFHGQ--TVLHG-IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG   58 (250)
T ss_pred             cEEEeceEEEECCe--eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            37899999999754  79999 9999999999999999999999999999998765443

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=5.1e-21  Score=159.74  Aligned_cols=149  Identities=12%  Similarity=0.049  Sum_probs=93.2

Q ss_pred             cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ++++|++++|+...   +++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....        
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~-vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK-VTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceee-eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEECccccccccH
Confidence            67899999996431   259999 99999999999999999999999999999988765443 333332110        


Q ss_pred             -----ccccccCC---CCCCCchHHH--------------HHHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEE
Q psy9640          95 -----HADIIVPR---GGENCVAIDL--------------IVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        95 -----~~~~~~~~---~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~Qrvaia  151 (199)
                           .....+..   ........+.              ....+.+.+.   .+.+.. ..+..+..|||||+||++||
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~~LSgGqkqrvaiA  156 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLE---MVGLADEFWEKSPFELSGGQMRRVAIA  156 (288)
T ss_pred             HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCCChhhccCCcccCCHHHHHHHHHH
Confidence                 00111111   0000000011              1111111111   123321 23456779999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||++.                     +.+.+.++... +.+.|.++||.+
T Consensus       157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~  205 (288)
T PRK13643        157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMD  205 (288)
T ss_pred             HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH
Confidence            99975                     45555554433 678899999865

>PRK10908 cell division protein FtsE; Provisional

Probab=99.81  E-value=8.8e-21  Score=152.41  Aligned_cols=149  Identities=14%  Similarity=0.071  Sum_probs=91.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      ++++|++++|+.. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...            
T Consensus         2 l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~   78 (222)
T PRK10908          2 IRFEHVSKAYLGG-RQALQG-VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK-IWFSGHDITRLKNREVPFLR   78 (222)
T ss_pred             EEEEeeEEEecCC-CeEEee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCChhHHHHHH
Confidence            6789999999422 479999 99999999999999999999999999999988665443 33322110            


Q ss_pred             ccccccc-CCCC-CCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          94 VHADIIV-PRGG-ENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        94 ~~~~~~~-~~~~-~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ....... .... .+....+              ...+.+...+.   ...+....+..+.+|||||+||++||||++. 
T Consensus        79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  155 (222)
T PRK10908         79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALD---KVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK  155 (222)
T ss_pred             hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHH---HcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence            0001111 1110 0000001              11111111111   1122222344567899999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.++... +.+.|.++||...
T Consensus       156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~  199 (222)
T PRK10908        156 PAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGL  199 (222)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence                                44444444333 5788999998764

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.81  E-value=1e-20  Score=161.28  Aligned_cols=148  Identities=14%  Similarity=0.074  Sum_probs=95.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~   96 (199)
                      -++++|++++|++.  .+|++ +||++++|+++||+||||||||||+++|+|++.|..+. +..++...        ...
T Consensus        41 ~i~i~nl~k~y~~~--~~l~~-is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~-i~i~G~~~~~~~~~~~~~i  116 (340)
T PRK13536         41 AIDLAGVSKSYGDK--AVVNG-LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK-ITVLGVPVPARARLARARI  116 (340)
T ss_pred             eEEEEEEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE-EEECCEECCcchHHHhccE
Confidence            49999999999765  79999 99999999999999999999999999999998776543 33332211        001


Q ss_pred             ccc-cCCCCCCCchH-HH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 DII-VPRGGENCVAI-DL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~~~-~~~~~~~~~~~-~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      ... ........... +.              ..+.+...+   ....++...+....+|||||+||++||||++.    
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll---~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l  193 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADARVSDLSGGMKRRLTLARALINDPQL  193 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHH---HHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            111 11111111010 10              111111111   12344444455677899999999999999975    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       +.+.+.+... -+.++|+++|+.+
T Consensus       194 LiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~  233 (340)
T PRK13536        194 LILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME  233 (340)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence                             5555555533 2678899998655

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=4.5e-21  Score=158.66  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      ++++||+++|++.  .++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.
T Consensus         2 l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (271)
T PRK13638          2 LATSDLWFRYQDE--PVLKG-LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA   57 (271)
T ss_pred             eEEEEEEEEcCCc--ccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence            6789999999754  79999 99999999999999999999999999999988765443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=9e-21  Score=154.22  Aligned_cols=148  Identities=11%  Similarity=0.039  Sum_probs=92.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      ++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...            
T Consensus         3 l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~   78 (242)
T PRK11124          3 IQLNGINCFYGAH--QALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT-LNIAGNHFDFSKTPSDKAIR   78 (242)
T ss_pred             EEEEeeEEEECCe--eeEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEecccccccchhhHH
Confidence            6789999999754  79999 99999999999999999999999999999988665443 33332210            


Q ss_pred             ---cccccc-cCCCCCCCch-HHHH---------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640          94 ---VHADII-VPRGGENCVA-IDLI---------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        94 ---~~~~~~-~~~~~~~~~~-~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                         ...... .......... .+.+               ...+.+.+.   ...++...+..+.+|||||+||++||||
T Consensus        79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~lara  155 (242)
T PRK11124         79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLE---RLRLKPYADRFPLHLSGGQQQRVAIARA  155 (242)
T ss_pred             HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               000011 1111111101 1111               111111111   1233333344677899999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ++.                     +.+.+.++.. -+.+.|+++||.+.
T Consensus       156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~  203 (242)
T PRK11124        156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEV  203 (242)
T ss_pred             HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence            975                     4444444432 35778999998763

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=7.3e-21  Score=156.93  Aligned_cols=59  Identities=15%  Similarity=0.076  Sum_probs=51.9

Q ss_pred             ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+..-++++|+++.|++.  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..
T Consensus         7 ~~~~~l~i~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~   65 (265)
T PRK10575          7 HSDTTFALRNVSFRVPGR--TLLHP-LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE   65 (265)
T ss_pred             CCCceEEEeeEEEEECCE--EEEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence            344458999999999754  79999 999999999999999999999999999999876544

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.81  E-value=4e-21  Score=149.88  Aligned_cols=139  Identities=12%  Similarity=0.096  Sum_probs=87.9

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCC
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGEN  106 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~  106 (199)
                      +++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.........  . .. 
T Consensus         1 ~~~~l~~~~~~~--~~l~~-~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~--~-~~-   72 (180)
T cd03214           1 EVENLSVGYGGR--TVLDD-LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPK--E-LA-   72 (180)
T ss_pred             CeeEEEEEECCe--eeEee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCcCCHH--H-HH-
Confidence            478999999764  79999 99999999999999999999999999999987665443 33332211000000  0 00 


Q ss_pred             CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhc
Q psy9640         107 CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVC  165 (199)
Q Consensus       107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~  165 (199)
                       .....+.+.+ +.      +.+....+..+.+|||||+||++||||++.                     +.+.+.+..
T Consensus        73 -~~i~~~~q~l-~~------~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~  144 (180)
T cd03214          73 -RKIAYVPQAL-EL------LGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA  144 (180)
T ss_pred             -HHHhHHHHHH-HH------cCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence             0001111112 11      122222234566899999999999999975                     333343333


Q ss_pred             cccceeEEEEEeCCCC
Q psy9640         166 KDIRIGKILIQTNKAT  181 (199)
Q Consensus       166 p~~~~~~~~~~~~~~~  181 (199)
                      ..-..+.|.++|+.+.
T Consensus       145 ~~~~~tiii~sh~~~~  160 (180)
T cd03214         145 RERGKTVVMVLHDLNL  160 (180)
T ss_pred             HhcCCEEEEEeCCHHH
Confidence            3214577999998664

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1e-20  Score=156.37  Aligned_cols=152  Identities=19%  Similarity=0.136  Sum_probs=95.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++|+++.|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+ .+..++....         .
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~-isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~   84 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKD-VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRKH   84 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhh
Confidence            488999999997643468999 9999999999999999999999999999998876543 3333332110         0


Q ss_pred             cccccCCC---CCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPRG---GENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~~---~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ........   ....              ...+...+.+...+.   ...+....+..+.+|||||+||++||||++.  
T Consensus        85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  161 (269)
T PRK13648         85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALK---QVDMLERADYEPNALSGGQKQRVAIAGVLALNP  161 (269)
T ss_pred             eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHH---HcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            00000000   0000              000111111111111   1222223344677899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+....-+.+.|.++|+.+.
T Consensus       162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~  205 (269)
T PRK13648        162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE  205 (269)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence                               4555555544335778999998764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.81  E-value=1.1e-20  Score=152.34  Aligned_cols=151  Identities=14%  Similarity=0.071  Sum_probs=93.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~   95 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...         ..
T Consensus         7 ~i~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~   82 (225)
T PRK10247          7 LLQLQNVGYLAGDA--KILNN-ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDISTLKPEIYRQQ   82 (225)
T ss_pred             eEEEeccEEeeCCc--eeeec-cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe-EEECCEEcCcCCHHHHHhc
Confidence            48899999999754  79999 99999999999999999999999999999987655433 32222110         00


Q ss_pred             cccccCC-CCCCCchHHHHH------------HHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch-----
Q psy9640          96 ADIIVPR-GGENCVAIDLIV------------QHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        96 ~~~~~~~-~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ....... ........+.+.            ..+.+.+.   .+.+. ...+..+.+|||||+||++||||++.     
T Consensus        83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  159 (225)
T PRK10247         83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLE---RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL  159 (225)
T ss_pred             cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHH---HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            0111111 001000001110            01111111   11222 12244677899999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                      +.+.+.+....-+.+.|.++||.+.+
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~  201 (225)
T PRK10247        160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI  201 (225)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence                            44445555443356789999987643

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.81  E-value=1.1e-20  Score=152.35  Aligned_cols=152  Identities=11%  Similarity=0.035  Sum_probs=93.6

Q ss_pred             Ccccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          25 GRDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      -++++|++++|++..  .+++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++...         
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTG-VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE-VSLVGQPLHQMDEEARA   83 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEec-cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee-EEECCEEcccCCHHHHH
Confidence            378999999997532  258999 99999999999999999999999999999988765443 33332110         


Q ss_pred             ----cccccccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640          94 ----VHADIIVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        94 ----~~~~~~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                          ......... ..... ...+.+              .+.+.+.+.   ...+....+..+..|||||+||++||||
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Ge~qrl~la~a  160 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLE---QLGLGKRLDHLPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence                001111111 11000 011111              111111111   1122222334567899999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ++.                     +.+.+.+.....+.++|+++||.+.
T Consensus       161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  209 (228)
T PRK10584        161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL  209 (228)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            975                     4444444434335688999998763

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=1.4e-20  Score=143.21  Aligned_cols=138  Identities=18%  Similarity=0.222  Sum_probs=92.2

Q ss_pred             ccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch--------hccccc---------
Q psy9640          35 YVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--------YRVHAD---------   97 (199)
Q Consensus        35 y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~--------~~~~~~---------   97 (199)
                      |.....++|++ +||.+.+|++++|.||||||||||+|.++.+..+..+.+...+.-        |+....         
T Consensus        11 y~a~~a~il~~-isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf   89 (223)
T COG4619          11 YLAGDAKILNN-ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF   89 (223)
T ss_pred             hhcCCCeeecc-eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence            43334589999 999999999999999999999999999999888776555433211        111100         


Q ss_pred             -------cccCCCCCC-CchHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeeeeeeEEeccch------------
Q psy9640          98 -------IIVPRGGEN-CVAIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSILRAGET------------  156 (199)
Q Consensus        98 -------~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~QrvaiaRA~~~------------  156 (199)
                             +.++....| ..+.+...+.+ .      ...+|.. +......||||++||+||+|-+..            
T Consensus        90 g~tVeDNlifP~~~r~rr~dr~aa~~ll-a------r~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts  162 (223)
T COG4619          90 GDTVEDNLIFPWQIRNRRPDRAAALDLL-A------RFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS  162 (223)
T ss_pred             ccchhhccccchHHhccCCChHHHHHHH-H------HcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence                   111111111 11222222222 2      2345553 344667899999999999998853            


Q ss_pred             ---------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                               ++.-+++...+-++..+-||||+.
T Consensus       163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d  195 (223)
T COG4619         163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKD  195 (223)
T ss_pred             hcChhhHHHHHHHHHHHhhhhceEEEEEecChH
Confidence                     677778888666999999999765

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.81  E-value=7.8e-21  Score=156.42  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=49.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -++++||++.|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+.
T Consensus         4 ~l~~~nl~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~   57 (262)
T PRK09984          4 IIRVEKLAKTFNQH--QALHA-VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD   57 (262)
T ss_pred             EEEEeeEEEEeCCe--EEEec-ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            37899999999754  79999 99999999999999999999999999999998764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.81  E-value=1.1e-20  Score=155.22  Aligned_cols=56  Identities=25%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         6 ~l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   61 (258)
T PRK11701          6 LLSVRGLTKLYGPR--KGCRD-VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG   61 (258)
T ss_pred             eEEEeeeEEEcCCc--eeeee-eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            38899999999764  79999 9999999999999999999999999999998876543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=1.6e-20  Score=148.82  Aligned_cols=149  Identities=14%  Similarity=0.084  Sum_probs=92.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------ccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------HAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~~~   97 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....        ...
T Consensus         2 l~~~~l~~~~~~~--~il~~-~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~i~   77 (200)
T PRK13540          2 LDVIELDFDYHDQ--PLLQQ-ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIKKDLCTYQKQLC   77 (200)
T ss_pred             EEEEEEEEEeCCe--eEEee-eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee-EEECCCccccCHHHHHhheE
Confidence            5789999999764  79999 99999999999999999999999999999988765443 333332110        000


Q ss_pred             cccCCCCCC-Cch-HHHHHH---------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------
Q psy9640          98 IIVPRGGEN-CVA-IDLIVQ---------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------  156 (199)
Q Consensus        98 ~~~~~~~~~-~~~-~~~~~~---------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------  156 (199)
                      ......... ... .+.+..         .+.+.+.   ...++...+....+|||||+||++||||+..          
T Consensus        78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP  154 (200)
T PRK13540         78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR---LFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP  154 (200)
T ss_pred             EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHH---HcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            111110010 001 111110         1111111   1122222233456899999999999999975          


Q ss_pred             -----------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 -----------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -----------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                 +.+.+.+... .+.+.|.++|+...+
T Consensus       155 ~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~  190 (200)
T PRK13540        155 LVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPL  190 (200)
T ss_pred             CcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhc
Confidence                       4444444322 256789999987754

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=6.8e-21  Score=158.63  Aligned_cols=151  Identities=12%  Similarity=0.077  Sum_probs=95.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------   94 (199)
                      -++++|++++|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....          
T Consensus         5 ~l~~~~l~~~~~~~-~~~l~~-vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~   81 (283)
T PRK13636          5 ILKVEELNYNYSDG-THALKG-ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR-ILFDGKPIDYSRKGLMKLR   81 (283)
T ss_pred             eEEEEeEEEEeCCC-Ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE-EEECCEECCCCcchHHHHH
Confidence            37899999999632 379999 99999999999999999999999999999988765433 333322110          


Q ss_pred             -ccccccCCC---CCCCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          95 -HADIIVPRG---GENCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 -~~~~~~~~~---~~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       .........   .......+.              ..+.+...+.   .+.+....+..+.+|||||+||++||||++.
T Consensus        82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LS~G~~qrl~laraL~~  158 (283)
T PRK13636         82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALK---RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM  158 (283)
T ss_pred             hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence             001111110   000000011              1111111111   1223233345677999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+.....+.++|+++||.+.
T Consensus       159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~  204 (283)
T PRK13636        159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI  204 (283)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence                                 4555655555446788999997653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=2.3e-20  Score=147.04  Aligned_cols=137  Identities=7%  Similarity=-0.018  Sum_probs=88.1

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeecccchhcc-----cc
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDSFYRV-----HA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d~~~~~-----~~   96 (199)
                      .++++|+++.|++.  .++++++ +||++++|++++|+|+||||||||+++|+|... ++..|.+..++....     ..
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i   81 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNN-ISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST   81 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEc-cEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence            37899999999751  2479999 999999999999999999999999999999753 244454444432110     01


Q ss_pred             ccccCC-CCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------------
Q psy9640          97 DIIVPR-GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------------  156 (199)
Q Consensus        97 ~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------------  156 (199)
                      ...... .......   +.+.+.....    .          .+|||||+||++||||++.                   
T Consensus        82 ~~~~q~~~~~~~~t---v~~~l~~~~~----~----------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~  144 (192)
T cd03232          82 GYVEQQDVHSPNLT---VREALRFSAL----L----------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA  144 (192)
T ss_pred             EEecccCccccCCc---HHHHHHHHHH----H----------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHH
Confidence            111111 0111111   1111200000    0          0799999999999999976                   


Q ss_pred             --hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                        +.+.+.+... .+.+.|.++|+.+
T Consensus       145 ~~l~~~l~~~~~-~~~tiiivtH~~~  169 (192)
T cd03232         145 YNIVRFLKKLAD-SGQAILCTIHQPS  169 (192)
T ss_pred             HHHHHHHHHHHH-cCCEEEEEEcCCh
Confidence              4455554433 2678899999865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=6.5e-21  Score=158.48  Aligned_cols=152  Identities=16%  Similarity=0.108  Sum_probs=94.8

Q ss_pred             Ccccccceeecccc----ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640          25 GRDLEGVIKQYVNM----VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~----~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------   94 (199)
                      -++++|++++|++.    .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....      
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~i~g~~i~~~~~~~   81 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDD-VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGK-VYVDGLDTSDEENLW   81 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEeccccccHH
Confidence            37899999999742    2479999 99999999999999999999999999999988765443 333321110      


Q ss_pred             ----ccccccCCC---CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640          95 ----HADIIVPRG---GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        95 ----~~~~~~~~~---~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                          .........   .....              ......+.+...+.   ...+....+..+.+|||||+||++||||
T Consensus        82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LS~G~~qrv~lara  158 (280)
T PRK13633         82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLK---KVGMYEYRRHAPHLLSGGQKQRVAIAGI  158 (280)
T ss_pred             HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHH---HCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence                001100000   00000              00001111111111   1223333344677999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ++.                     +.+.+.++....+.+.|.++||.+.
T Consensus       159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~  207 (280)
T PRK13633        159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE  207 (280)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence            975                     4445555444346788999998664

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.6e-20  Score=153.53  Aligned_cols=53  Identities=11%  Similarity=0.229  Sum_probs=48.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   55 (250)
T PRK14247          3 KIEIRDLKVSFGQV--EVLDG-VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL   55 (250)
T ss_pred             eEEEEeeEEEECCe--eeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            47899999999764  79999 9999999999999999999999999999999864

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.3e-20  Score=159.49  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             cCcccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          24 RGRDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .-|+++|+++.|+..   .+++|++ +||++++|++++|+|+||||||||+++|+|++.+..+
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~-vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G   81 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNN-ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG   81 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            358999999999642   2469999 9999999999999999999999999999998876544

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=1.2e-20  Score=149.82  Aligned_cols=119  Identities=8%  Similarity=-0.044  Sum_probs=77.2

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhccc------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVH------   95 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~------   95 (199)
                      +.++||+|.|+..  .++++++ ++|++++|++++|+|+||||||||+++|+|.+.+  +..|.+..++.....      
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKD-FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             EEEEccEEEeccCCCCceeeee-EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            6789999999742  4679999 9999999999999999999999999999999873  344444444321110      


Q ss_pred             --cccccCCC-CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          96 --ADIIVPRG-GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        96 --~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                        ........ ......   +.+.+.....    ..    .+.....|||||+||++||||++.
T Consensus        83 ~~i~~~~q~~~~~~~~t---v~~~l~~~~~----~~----~~~~~~~LS~Ge~qrl~laral~~  135 (202)
T cd03233          83 GEIIYVSEEDVHFPTLT---VRETLDFALR----CK----GNEFVRGISGGERKRVSIAEALVS  135 (202)
T ss_pred             ceEEEEecccccCCCCc---HHHHHhhhhh----hc----cccchhhCCHHHHHHHHHHHHHhh
Confidence              00111110 111111   1112210000    00    233456899999999999999975

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.3e-20  Score=156.02  Aligned_cols=153  Identities=17%  Similarity=0.112  Sum_probs=93.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++|+++.|++..++++++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++....         .
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKN-VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE-IKIDGITISKENLKEIRKK   84 (271)
T ss_pred             EEEEEeEEEEcCCCCccceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEecCcCCHHHHhcc
Confidence            488999999996433579999 99999999999999999999999999999988765433 333221110         0


Q ss_pred             ccccc-CC--CCCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIV-PR--GGENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~-~~--~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ..... ..  ......              ..+.....+.+.+.   ...+....+..+.+|||||+||++||||++.  
T Consensus        85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  161 (271)
T PRK13632         85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAK---KVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP  161 (271)
T ss_pred             eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            00000 00  000000              00001011111111   1122222344667999999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                         +.+.+.+....-+.+.|.++|+.+.+
T Consensus       162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~  206 (271)
T PRK13632        162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA  206 (271)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH
Confidence                               44445444332236789999987643

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.80  E-value=1.5e-20  Score=154.42  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=53.0

Q ss_pred             cccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          22 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        22 ~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ....++++|++++|++....++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   76 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKH-VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG   76 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeE-EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC
Confidence            345699999999997643479999 9999999999999999999999999999998765443

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.80  E-value=5.5e-21  Score=146.97  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=83.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE  105 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~  105 (199)
                      ++++|+++.|++.  +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+. +..++.....          
T Consensus         1 l~~~~l~~~~~~~--~vl~~-i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~----------   66 (163)
T cd03216           1 LELRGITKRFGGV--KALDG-VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSF----------   66 (163)
T ss_pred             CEEEEEEEEECCe--EEEee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCc----------
Confidence            4689999999765  79999 99999999999999999999999999999987665433 3333211100          


Q ss_pred             CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhh
Q psy9640         106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDV  164 (199)
Q Consensus       106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~  164 (199)
                        .....   ..    .. .     .++-.   +|||||+||++||||+..                     +.+.+.+.
T Consensus        67 --~~~~~---~~----~~-~-----i~~~~---qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~  128 (163)
T cd03216          67 --ASPRD---AR----RA-G-----IAMVY---QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL  128 (163)
T ss_pred             --CCHHH---HH----hc-C-----eEEEE---ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence              00000   01    00 0     11111   399999999999999975                     34444444


Q ss_pred             ccccceeEEEEEeCCC
Q psy9640         165 CKDIRIGKILIQTNKA  180 (199)
Q Consensus       165 ~p~~~~~~~~~~~~~~  180 (199)
                      ... +.+.|.++||.+
T Consensus       129 ~~~-~~tiii~sh~~~  143 (163)
T cd03216         129 RAQ-GVAVIFISHRLD  143 (163)
T ss_pred             HHC-CCEEEEEeCCHH
Confidence            322 577899999866

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.1e-20  Score=160.56  Aligned_cols=155  Identities=12%  Similarity=0.099  Sum_probs=95.6

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccchhcc-----
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRV-----   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~~~~~-----   94 (199)
                      ..++++|++++|.+...++|++ +||+|++|+++||+|+||||||||+++|+|...+    +..|.+..|+....     
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~-is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHD-LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            3589999999997544579999 9999999999999999999999999999998753    23344444332211     


Q ss_pred             ------ccc-cccCCCCCCCc--------------hHHHHHH-HHHHHHhcCce-eecCCceeeecceecCCeeeeeeEE
Q psy9640          95 ------HAD-IIVPRGGENCV--------------AIDLIVQ-HIHSQLQAGVS-VDMPQGYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        95 ------~~~-~~~~~~~~~~~--------------~~~~~~~-~l~~~~~~~~~-~~~~~~~~~~g~~lSgGq~Qrvaia  151 (199)
                            ... .+......+..              ..+...+ .....+..... ..+....+..+..|||||+||++||
T Consensus       158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA  237 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA  237 (329)
T ss_pred             hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence                  000 00110011100              0011111 01111111000 0111123446889999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ||++.                     +.+.+.+...+  .+.|+|+|+.+.
T Consensus       238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~--~Tii~iTH~l~~  286 (329)
T PRK14257        238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK--YSIIIVTHSMAQ  286 (329)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHH
Confidence            99975                     55666665543  577999997764

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.80  E-value=6e-21  Score=171.38  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=95.1

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccchhcc----
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDSFYRV----   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~~~~~----   94 (199)
                      -++++|++++|+..  .+++|++ +||++.+|++++|+||||||||||+++|+|.+.+.    ..|.+..++....    
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVND-VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeec-eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            38899999999631  2479999 99999999999999999999999999999998752    3444433322100    


Q ss_pred             ---------ccccccCCC---CCCCchH-H---------------HHHHHHHHHHhcCceeecCC---ceeeecceecCC
Q psy9640          95 ---------HADIIVPRG---GENCVAI-D---------------LIVQHIHSQLQAGVSVDMPQ---GYTYEGKRCAVS  143 (199)
Q Consensus        95 ---------~~~~~~~~~---~~~~~~~-~---------------~~~~~l~~~~~~~~~~~~~~---~~~~~g~~lSgG  143 (199)
                               .........   ....... +               ...+.+.+.+.   .+.++.   ..+..+.+||||
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~~~~LSgG  160 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLD---RVGIRQAAKRLTDYPHQLSGG  160 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HCCCCChHHHHhhCCcccCHH
Confidence                     001111110   0000000 0               01111111111   122221   124457799999


Q ss_pred             eeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         144 KICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       144 q~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      |+|||+||||++.                     +.+.+.++....+.++|.|+||.+.
T Consensus       161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  219 (529)
T PRK15134        161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI  219 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence            9999999999975                     4555555544346788999998763

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.80  E-value=1.8e-20  Score=152.26  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=51.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeecccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDS   90 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d~   90 (199)
                      ++++|+++.|++.  ++|++ +||++++|++++|+||||||||||+++|+|.+. ++..|.+..++
T Consensus         1 l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g   63 (243)
T TIGR01978         1 LKIKDLHVSVEDK--EILKG-VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG   63 (243)
T ss_pred             CeEeeEEEEECCE--EEEec-cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC
Confidence            5789999999754  79999 999999999999999999999999999999852 34444444443

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=1.8e-20  Score=149.99  Aligned_cols=150  Identities=11%  Similarity=0.033  Sum_probs=94.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------HADI   98 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------~~~~   98 (199)
                      -++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....      ....
T Consensus        11 ~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~-i~~~g~~i~~~~~~~~i~~   86 (214)
T PRK13543         11 LLAAHALAFSRNEE--PVFGP-LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ-IQIDGKTATRGDRSRFMAY   86 (214)
T ss_pred             eEEEeeEEEecCCc--eeeec-ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee-EEECCEEccchhhhhceEE
Confidence            48899999999764  69999 99999999999999999999999999999988765543 333321110      0011


Q ss_pred             ccCC-CCCCC-chHHHHH-----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640          99 IVPR-GGENC-VAIDLIV-----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus        99 ~~~~-~~~~~-~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                      .... ..... ...+.+.           +.+...+   ....++...+.....|||||+||++||||++.         
T Consensus        87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (214)
T PRK13543         87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL---AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE  163 (214)
T ss_pred             eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHH---HHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            1111 11100 0111110           0110111   11233333455667899999999999999975         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                  +.+.+.+.... +.+.|+++||.+..
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~  200 (214)
T PRK13543        164 PYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAA  200 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhh
Confidence                        44444444332 56789999988754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2e-20  Score=154.50  Aligned_cols=67  Identities=16%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccc
Q psy9640          21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDS   90 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~   90 (199)
                      .++..|+++||++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+    +..|.+..++
T Consensus        15 ~~~~~l~~~nl~~~~~~~--~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g   85 (267)
T PRK14235         15 ATEIKMRARDVSVFYGEK--QALFD-VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG   85 (267)
T ss_pred             CCCceEEEEeEEEEECCE--EEEEE-EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence            344579999999999754  79999 9999999999999999999999999999999875    3445454443

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=8.8e-21  Score=158.33  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=51.8

Q ss_pred             cCcccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          24 RGRDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ..++++|++++|++..   .++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   66 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNN-TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG   66 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5689999999997542   359999 9999999999999999999999999999998876543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.80  E-value=1.5e-20  Score=151.71  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=91.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~   95 (199)
                      ++++||++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...          ..
T Consensus         1 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~   76 (230)
T TIGR03410         1 LEVSNLNVYYGQS--HILRG-VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-IRLDGEDITKLPPHERARAG   76 (230)
T ss_pred             CEEEeEEEEeCCe--EEecc-eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHHhC
Confidence            5689999999764  79999 99999999999999999999999999999988765443 33332110          00


Q ss_pred             ccccc-CCCCCCCchH-HHHHHH-----------HHHHHhcCceee-cCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          96 ADIIV-PRGGENCVAI-DLIVQH-----------IHSQLQAGVSVD-MPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        96 ~~~~~-~~~~~~~~~~-~~~~~~-----------l~~~~~~~~~~~-~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ..... .......... +.+...           ....+.   ... +....+....+|||||+||++||||+..     
T Consensus        77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il  153 (230)
T TIGR03410        77 IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYE---LFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL  153 (230)
T ss_pred             eEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHH---HHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            01111 1111111011 111000           000000   011 1122244567899999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                      +.+.+.+....-+.+.|.++||.+.
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  194 (230)
T TIGR03410       154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF  194 (230)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence                            4444444433235778999998763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.2e-20  Score=156.69  Aligned_cols=151  Identities=11%  Similarity=0.025  Sum_probs=93.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++|++++|++. ..++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....         .
T Consensus         3 ~l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~   79 (277)
T PRK13652          3 LIETRDLCYSYSGS-KEALNN-INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS-VLIRGEPITKENIREVRKF   79 (277)
T ss_pred             eEEEEEEEEEeCCC-CceeeE-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCcCCHHHHHhh
Confidence            37789999999643 269999 99999999999999999999999999999988765443 333322110         0


Q ss_pred             cccccCC---CCCCCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPR---GGENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~---~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .......   ...+....+.+              .+.+...+.   .+.+....+..+..|||||+||++||||+..  
T Consensus        80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p  156 (277)
T PRK13652         80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALH---MLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP  156 (277)
T ss_pred             eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            0110000   00000000111              011111111   1223333344677999999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+....-+.++|.++||.+.
T Consensus       157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~  200 (277)
T PRK13652        157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL  200 (277)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                               4444444444335778999998653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.8e-20  Score=153.75  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (255)
T PRK11231          3 LRTENLTVGYGTK--RILND-LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG   57 (255)
T ss_pred             EEEEeEEEEECCE--EEEee-eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            6789999999754  79999 9999999999999999999999999999998866543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.7e-20  Score=153.73  Aligned_cols=152  Identities=11%  Similarity=0.090  Sum_probs=94.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccchhcc------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDSFYRV------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~~~~~------   94 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+.    ..|.+..++....      
T Consensus         7 ~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          7 IIETENLNLFYTDF--KALNN-INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             eEEEeeeEEEeCCc--eeecc-eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            48999999999754  79999 99999999999999999999999999999998753    2344433332110      


Q ss_pred             -----cccccc-CCCCCCCchHHHH---------------HHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEe
Q psy9640          95 -----HADIIV-PRGGENCVAIDLI---------------VQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        95 -----~~~~~~-~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                           ...... ..........+.+               .+.+...+...... .++..+++.+.+|||||+||++|||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar  163 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR  163 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence                 000100 0000100000100               11111111100000 1122345567899999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      |++.                     +.+.+.+...  +.++|.++||...
T Consensus       164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~~  211 (254)
T PRK14273        164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNMQQ  211 (254)
T ss_pred             HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH
Confidence            9975                     5555555532  4678999997763

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.1e-20  Score=153.16  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         5 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   60 (255)
T PRK11300          5 LLSVSGLMMRFGGL--LAVNN-VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG   60 (255)
T ss_pred             eEEEeeEEEEECCE--EEEEe-eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            38899999999754  79999 9999999999999999999999999999998866543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.80  E-value=1.9e-20  Score=152.17  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-----------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-----------   94 (199)
                      ++++|++++|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....           
T Consensus         2 l~~~~l~~~~~~~--~il~~-~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~   77 (240)
T PRK09493          2 IEFKNVSKHFGPT--QVLHN-IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD-LIVDGLKVNDPKVDERLIRQ   77 (240)
T ss_pred             EEEEeEEEEECCe--EEeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCChhHHHHhh
Confidence            5789999999754  79999 99999999999999999999999999999988665443 333322110           


Q ss_pred             ccccccCC-CCCCCch-HHH---------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 HADIIVPR-GGENCVA-IDL---------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~~~~~-~~~~~~~-~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ........ ....... .+.               ..+.+.+.+.   ...+....+..+..|||||+||++||||++. 
T Consensus        78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  154 (240)
T PRK09493         78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLA---KVGLAERAHHYPSELSGGQQQRVAIARALAVK  154 (240)
T ss_pred             ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHH---HcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence            00111111 1110000 011               1111111111   1223222344567899999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+... -+.+.|.++||.+.
T Consensus       155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~  198 (240)
T PRK09493        155 PKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGF  198 (240)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH
Confidence                                4444444432 25788999998764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.80  E-value=2.5e-20  Score=153.02  Aligned_cols=58  Identities=21%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++.++++|+++.|++.  +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 ~~~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   60 (257)
T PRK10619          3 ENKLNVIDLHKRYGEH--EVLKG-VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG   60 (257)
T ss_pred             CccEEEeeeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            4568999999999754  79999 9999999999999999999999999999998876543

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.2e-20  Score=141.50  Aligned_cols=151  Identities=19%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee--cccchhcccccc---
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL--SMDSFYRVHADI---   98 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i--~~d~~~~~~~~~---   98 (199)
                      .-+++.++|+.|...  ..+++ |||.+-+||+++|+|+||||||||+++|++.+.|..+.+.  ..++..+....+   
T Consensus         5 PLL~V~~lsk~Yg~~--~gc~~-vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa   81 (258)
T COG4107           5 PLLSVSGLSKLYGPG--KGCRD-VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA   81 (258)
T ss_pred             cceeehhhhhhhCCC--cCccc-cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence            357899999999776  67899 9999999999999999999999999999999987644332  212211110000   


Q ss_pred             ----c--cCCC--CCCC------------------ch-----HHHHHHHHHHHHhcCceeecCC-ceeeecceecCCeee
Q psy9640          99 ----I--VPRG--GENC------------------VA-----IDLIVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKIC  146 (199)
Q Consensus        99 ----~--~~~~--~~~~------------------~~-----~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~Q  146 (199)
                          .  .+.+  ..|+                  .+     +..+......++.   .++.+. ..+-.|..+||||+|
T Consensus        82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~---~VEI~~~RiDD~PrtFSGGMqQ  158 (258)
T COG4107          82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE---EVEIDLDRIDDLPRTFSGGMQQ  158 (258)
T ss_pred             HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHH---hcccCcccccCcccccchHHHH
Confidence                0  0000  0110                  01     1122222223333   233333 234468899999999


Q ss_pred             eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |+.|||-+..                     +.+.+..+..++++++|.++||-+
T Consensus       159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~  213 (258)
T COG4107         159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA  213 (258)
T ss_pred             HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence            9999999965                     667778888899999999999854

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.80  E-value=2.1e-20  Score=153.28  Aligned_cols=150  Identities=13%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---eeeeecccchhcc-------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFYRV-------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---~~~~i~~d~~~~~-------   94 (199)
                      .++++|++++| +  +++|++ +||++.+|++++|+|+||||||||+++|+|.+.+.   ..|.+..++....       
T Consensus         4 ~l~~~~l~~~~-~--~~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   79 (254)
T PRK10418          4 QIELRNIALQA-A--QPLVHG-VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR   79 (254)
T ss_pred             EEEEeCeEEEe-c--cceecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence            47899999999 3  379999 99999999999999999999999999999998761   3343433332110       


Q ss_pred             ccccccCCC--CCCC-chH-HHHH------------HHHHHHHhcCceeecCC---ceeeecceecCCeeeeeeEEeccc
Q psy9640          95 HADIIVPRG--GENC-VAI-DLIV------------QHIHSQLQAGVSVDMPQ---GYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        95 ~~~~~~~~~--~~~~-~~~-~~~~------------~~l~~~~~~~~~~~~~~---~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                      .........  ...+ ... +.+.            +.+.+.+.   .+.+..   ..+..+.+|||||+||++||||++
T Consensus        80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~  156 (254)
T PRK10418         80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALE---AVGLENAARVLKLYPFEMSGGMLQRMMIALALL  156 (254)
T ss_pred             eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHH---HcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence            001111110  0110 000 0000            01111111   112221   124456789999999999999996


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      .                     +.+.+.+...+-+.+.|.++|+.+.
T Consensus       157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~  203 (254)
T PRK10418        157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV  203 (254)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence            5                     4455555544446788999997653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.80  E-value=2.8e-20  Score=149.76  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++||+++|++..  .+++++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDD-VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecC-ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            57899999996531  268999 9999999999999999999999999999998866543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.80  E-value=3.1e-20  Score=153.44  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             Ccccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++||+++|+..       ..++|++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   68 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKP-LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG   68 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeee-eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            37899999999631       2469999 9999999999999999999999999999999876544

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.80  E-value=2e-20  Score=153.76  Aligned_cols=55  Identities=13%  Similarity=0.135  Sum_probs=49.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|++++|++.  .+|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G   57 (258)
T PRK13548          3 LEARNLSVRLGGR--TLLDD-VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG   57 (258)
T ss_pred             EEEEeEEEEeCCe--eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            6789999999764  79999 9999999999999999999999999999998866543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=1.9e-20  Score=156.25  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=92.5

Q ss_pred             cccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          26 RDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ++++|+++.|++.   .++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....        
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~   80 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDN-ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT-ITIAGYHITPETGNKNL   80 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEECccccccchH
Confidence            6789999999642   1469999 99999999999999999999999999999988765433 333332110        


Q ss_pred             -----ccccccCC---CCCCCchHHHH--------------HHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEE
Q psy9640          95 -----HADIIVPR---GGENCVAIDLI--------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        95 -----~~~~~~~~---~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrvaia  151 (199)
                           ........   ........+.+              .+.+.+.+.   .+.+. ...+..+.+|||||+||++||
T Consensus        81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~~LSgGq~qrl~la  157 (287)
T PRK13641         81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLK---KVGLSEDLISKSPFELSGGQMRRVAIA  157 (287)
T ss_pred             HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCChhHhhCCcccCCHHHHHHHHHH
Confidence                 00111110   00000000111              111111111   12332 122445678999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||++.                     +.+.+.++. +.+.++|.++||.+
T Consensus       158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~-~~g~tvlivsH~~~  206 (287)
T PRK13641        158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ-KAGHTVILVTHNMD  206 (287)
T ss_pred             HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH
Confidence            99975                     444454443 33688899999765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.80  E-value=3.2e-20  Score=151.50  Aligned_cols=53  Identities=19%  Similarity=0.225  Sum_probs=48.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++++||+++|++.  .++++ +||++++|++++|+|+||||||||+++|+|.+.+.
T Consensus         2 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972         2 IEIENLNLFYGEK--EALKN-INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             EEEEEEEEEECCe--eeecc-eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            6789999999764  69999 99999999999999999999999999999998764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.4e-20  Score=161.86  Aligned_cols=149  Identities=13%  Similarity=0.066  Sum_probs=90.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------   93 (199)
                      .++++++...|...  .++++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...           
T Consensus        28 ~~~~~~~~~~~~~~--~~L~~-isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~-I~i~G~~i~~~~~~~l~~~  103 (400)
T PRK10070         28 GLSKEQILEKTGLS--LGVKD-ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ-VLIDGVDIAKISDAELREV  103 (400)
T ss_pred             cccHHHHHhhcCCe--EEEEe-EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE-EEECCEECCcCCHHHHHHH
Confidence            45555555655433  58999 99999999999999999999999999999998765443 33322110           


Q ss_pred             --cccccccCC-CCC-CCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          94 --VHADIIVPR-GGE-NCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 --~~~~~~~~~-~~~-~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ......... ... +....+.+              .+.+.+.+.   .+.+....+..+.+|||||+|||+||||++
T Consensus       104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~---~~gL~~~~~~~~~~LSgGq~QRv~LArAL~  180 (400)
T PRK10070        104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR---QVGLENYAHSYPDELSGGMRQRVGLARALA  180 (400)
T ss_pred             HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCChhhhcCcccCCHHHHHHHHHHHHHh
Confidence              001111111 111 10000111              111111111   123333334567799999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.+.....+.+.|+++||.+
T Consensus       181 ~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~  226 (400)
T PRK10070        181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD  226 (400)
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            6                     555666655444677899999764

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.2e-20  Score=154.08  Aligned_cols=58  Identities=12%  Similarity=0.118  Sum_probs=51.6

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ...|+++|++++|++.  .+|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+
T Consensus         5 ~~~l~i~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   62 (265)
T PRK10253          5 VARLRGEQLTLGYGKY--TVAEN-LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG   62 (265)
T ss_pred             ccEEEEEEEEEEECCE--EEeee-cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            3468899999999754  79999 9999999999999999999999999999998866543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4e-20  Score=151.90  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeecccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMDS   90 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d~   90 (199)
                      .++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.++    ..|.+..++
T Consensus         4 ~l~i~~v~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g   70 (258)
T PRK14241          4 RIDVKDLNIYYGSF--HAVED-VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG   70 (258)
T ss_pred             cEEEeeEEEEECCE--eeeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence            58899999999764  79999 99999999999999999999999999999988641    345554443

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.80  E-value=3.7e-20  Score=142.42  Aligned_cols=62  Identities=24%  Similarity=0.246  Sum_probs=51.8

Q ss_pred             cccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeec
Q psy9640          22 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS   87 (199)
Q Consensus        22 ~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~   87 (199)
                      .+..++++|+.++|...  .+|++ ||++..+|+++.|+|.|||||||+++||- ++..+..|.+.
T Consensus         3 ~~~~l~v~dlHK~~G~~--eVLKG-vSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~P~~G~I~   64 (256)
T COG4598           3 AENALEVEDLHKRYGEH--EVLKG-VSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSAGSIR   64 (256)
T ss_pred             cccceehhHHHhhcccc--hhhcc-eeeecCCCCEEEEecCCCCchhHHHHHHH-hhcCCCCceEE
Confidence            34568999999999887  79999 99999999999999999999999999984 55444444443

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.8e-20  Score=153.08  Aligned_cols=52  Identities=21%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|++++|++.  .+|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus        13 ~l~i~nl~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         13 IISLQNVTISYGTF--EAVKN-VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             eEEEEeEEEEECCE--EEEcc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            48999999999764  79999 999999999999999999999999999999876

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.79  E-value=6.2e-20  Score=144.87  Aligned_cols=137  Identities=8%  Similarity=-0.057  Sum_probs=88.0

Q ss_pred             Ccccccceeecccc----ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc--CCCeeeeecccchhccc---
Q psy9640          25 GRDLEGVIKQYVNM----VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL--NVPWVTLLSMDSFYRVH---   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~----~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l--~~~~~~~i~~d~~~~~~---   95 (199)
                      .++++|++++|++.    .++++++ +||++++|++++|+|+||||||||+++|+|.+  .+.. |.+..++.....   
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~-~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~-G~i~~~g~~~~~~~~   80 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKN-VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS-GEVLINGRPLDKRSF   80 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceec-ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEeCchHhh
Confidence            37899999999752    2479999 99999999999999999999999999999988  5544 444444321110   


Q ss_pred             ---cccccCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640          96 ---ADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------  156 (199)
Q Consensus        96 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------  156 (199)
                         ...........+  ...+.+.+.....    .          .+|||||+||++||||++.                
T Consensus        81 ~~~i~~~~q~~~~~~--~~t~~~~i~~~~~----~----------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~  144 (194)
T cd03213          81 RKIIGYVPQDDILHP--TLTVRETLMFAAK----L----------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS  144 (194)
T ss_pred             hheEEEccCcccCCC--CCcHHHHHHHHHH----h----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence               011111100000  0011122200000    0          0799999999999999975                


Q ss_pred             -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                           +.+.+.+... .+.+.|.++||.+
T Consensus       145 ~~~~~l~~~l~~~~~-~~~tiii~sh~~~  172 (194)
T cd03213         145 SSALQVMSLLRRLAD-TGRTIICSIHQPS  172 (194)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEecCch
Confidence                 4444444432 2678899999875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.9e-20  Score=153.16  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=50.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++++|++++|++. ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         6 ~l~~~~l~~~~~~~-~~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   62 (272)
T PRK15056          6 GIVVNDVTVTWRNG-HTALRD-ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG   62 (272)
T ss_pred             eEEEEeEEEEecCC-cEEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            48899999999632 379999 9999999999999999999999999999998876443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.79  E-value=3.3e-20  Score=165.12  Aligned_cols=147  Identities=8%  Similarity=-0.032  Sum_probs=92.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------ccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~   96 (199)
                      |+++|++++|++.  .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+. .++...         ...
T Consensus         4 l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~-~~~~~~~~~~~~~~~~~i   79 (490)
T PRK10938          4 LQISQGTFRLSDT--KTLQL-PSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ-SQFSHITRLSFEQLQKLV   79 (490)
T ss_pred             EEEEeEEEEcCCe--eeccc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE-ECCcccccCCHHHHHHHh
Confidence            7899999999754  69999 9999999999999999999999999999998876544332 221100         000


Q ss_pred             ccccCC-CC--C----C--CchH-HH------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 DIIVPR-GG--E----N--CVAI-DL------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~~~~~~-~~--~----~--~~~~-~~------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      ...... ..  .    +  .... +.      ..+.+.+.+.   .+.+....+..+.+|||||+||++||||++.    
T Consensus        80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  156 (490)
T PRK10938         80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQ---QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL  156 (490)
T ss_pred             ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHH---HcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            000000 00  0    0  0000 00      0111211111   1233333344567999999999999999975    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       +.+.+.+.... +.++|.++||.+
T Consensus       157 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~  196 (490)
T PRK10938        157 LILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFD  196 (490)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence                             55555554333 678899999865

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4.2e-20  Score=150.18  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   58 (241)
T PRK10895          3 TLTAKNLAKAYKGR--RVVED-VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG   58 (241)
T ss_pred             eEEEeCcEEEeCCE--EEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            37899999999754  79999 9999999999999999999999999999998866543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.4e-20  Score=151.27  Aligned_cols=62  Identities=15%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeeccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMD   89 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d   89 (199)
                      .++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+  +..|.+..+
T Consensus         2 ~~~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~   65 (246)
T PRK14269          2 IAKTTNLNLFYGKK--QALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIE   65 (246)
T ss_pred             ceeeeeeEEEECCE--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEEC
Confidence            36799999999754  79999 9999999999999999999999999999998753  334444433

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=2.4e-20  Score=154.63  Aligned_cols=149  Identities=16%  Similarity=0.094  Sum_probs=92.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------c
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------H   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------~   95 (199)
                      ++++|+++.|++. +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....          .
T Consensus         2 l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~   78 (274)
T PRK13644          2 IRLENVSYSYPDG-TPALEN-INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK-VLVSGIDTGDFSKLQGIRKL   78 (274)
T ss_pred             EEEEEEEEEcCCC-Cceeee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCEECCccccHHHHHhh
Confidence            5789999999642 369999 99999999999999999999999999999988765433 322221110          0


Q ss_pred             cccccCC-C--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPR-G--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~-~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ....... .  .....              ......+.+...+.   ...+....+..+..|||||+||++||||+..  
T Consensus        79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  155 (274)
T PRK13644         79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALA---EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP  155 (274)
T ss_pred             eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            0000000 0  00000              00011111111111   1222222344677899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.++.. .+.+.|.++||.+.
T Consensus       156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~  198 (274)
T PRK13644        156 ECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEE  198 (274)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH
Confidence                               4455555433 36788999997653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.79  E-value=1.9e-20  Score=149.32  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      ++++|++++|++.  .  .+ +||++.+|++++|+||||||||||+++|+|.+.+..+. +..++...       .....
T Consensus         1 i~~~~l~~~~~~~--~--~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~   74 (211)
T cd03298           1 VRLDKIRFSYGEQ--P--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR-VLINGVDVTAAPPADRPVSM   74 (211)
T ss_pred             CEEEeEEEEeCCE--e--cc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEEcCcCCHhHccEEE
Confidence            4689999999753  2  38 99999999999999999999999999999998765432 22222110       00000


Q ss_pred             cc-CCCCCCCch-HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IV-PRGGENCVA-ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~-~~~~~~~~~-~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .. ......... .+              ...+.+.+.+.   ...+....+..+.+|||||+||++||||++.      
T Consensus        75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll  151 (211)
T cd03298          75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALA---RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL  151 (211)
T ss_pred             EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHH---HcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            00 000000000 00              00111111111   1122222233566899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+.....+.+.|.++||.+.
T Consensus       152 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~  191 (211)
T cd03298         152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED  191 (211)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                           4455555544446788999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.79  E-value=3.5e-20  Score=152.90  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=49.9

Q ss_pred             cccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++||++.|++.       .+.++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   66 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTN-VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG   66 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeC-ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            6789999999631       3479999 9999999999999999999999999999998876543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=9.4e-20  Score=141.85  Aligned_cols=144  Identities=13%  Similarity=0.110  Sum_probs=96.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-----------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-----------   94 (199)
                      ++++||+++|.+.  .++++ +|+.+++|.+.+|+||||||||||+.+++.++..+.+ .+..++....           
T Consensus         2 I~i~nv~K~y~~~--~vl~~-isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~LAk~l   77 (252)
T COG4604           2 ITIENVSKSYGTK--VVLDD-VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKELAKKL   77 (252)
T ss_pred             eeehhhhHhhCCE--Eeecc-ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHHHHHH
Confidence            6789999999887  89999 9999999999999999999999999888777765543 3333322100           


Q ss_pred             -----ccc----------cccCC-----CCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          95 -----HAD----------IIVPR-----GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        95 -----~~~----------~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                           .+.          ..+.|     ++.+..+...+.+++ +.+.   ..++...   .-.+||||||||.-||..+
T Consensus        78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~ai-eyl~---L~~l~dr---yLd~LSGGQrQRAfIAMVl  150 (252)
T COG4604          78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI-EYLH---LEDLSDR---YLDELSGGQRQRAFIAMVL  150 (252)
T ss_pred             HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHH-HHhc---ccchHHH---hHHhcccchhhhhhhheee
Confidence                 000          01111     112222333333444 3222   1122222   2347999999999999887


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ..                     |++.++++-.+..=+.|.|-||=+
T Consensus       151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN  197 (252)
T COG4604         151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN  197 (252)
T ss_pred             eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence            54                     888888888888888899998644

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=5.8e-20  Score=150.37  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .-++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|+..
T Consensus         5 ~~l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14242          5 PKMEARGLSFFYGDF--QALHD-ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND   57 (253)
T ss_pred             cEEEEeeeEEEECCe--eeecc-eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            348899999999754  79999 999999999999999999999999999999864

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=5.5e-20  Score=150.55  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=52.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----eeeeeccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----WVTLLSMD   89 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----~~~~i~~d   89 (199)
                      -++++|++++|++.  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+.    ..|.+..+
T Consensus         4 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~   69 (253)
T PRK14267          4 AIETVNLRVYYGSN--HVIKG-VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLF   69 (253)
T ss_pred             eEEEEeEEEEeCCe--eeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEEC
Confidence            37899999999764  79999 99999999999999999999999999999998763    34544443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=4.9e-20  Score=164.67  Aligned_cols=149  Identities=12%  Similarity=0.127  Sum_probs=94.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-Ceeeeecccchhc----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-PWVTLLSMDSFYR----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-~~~~~i~~d~~~~----------   93 (199)
                      -++++|++++|++.  ++|++ +||++++|++++|+||||||||||+++|+|.+.+ +..|.+..++...          
T Consensus         5 ~l~~~nl~~~~~~~--~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (506)
T PRK13549          5 LLEMKNITKTFGGV--KALDN-VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER   81 (506)
T ss_pred             eEEEeeeEEEeCCe--Eeecc-eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence            38899999999754  79999 9999999999999999999999999999998876 2444443332110          


Q ss_pred             cccccc-cCCCCCC------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          94 VHADII-VPRGGEN------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        94 ~~~~~~-~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                      ...... .......                  ....+...+.+.+.+.   .+.++...+....+|||||+|||+||||+
T Consensus        82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGqkqrv~la~al  158 (506)
T PRK13549         82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLA---QLKLDINPATPVGNLGLGQQQLVEIAKAL  158 (506)
T ss_pred             CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHH---HcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence            000000 0000000                  0011111112212221   12333333446678999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +.                     +.+.+.+.. .-+.++|.++||.+
T Consensus       159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tvi~~tH~~~  204 (506)
T PRK13549        159 NKQARLLILDEPTASLTESETAVLLDIIRDLK-AHGIACIYISHKLN  204 (506)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            75                     445555543 23678899999865

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3.9e-20  Score=151.98  Aligned_cols=57  Identities=16%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +....++++|+++.|++.  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+
T Consensus         8 ~~~~~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   64 (258)
T PRK14268          8 VAQPQIKVENLNLWYGEK--QALKN-VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL   64 (258)
T ss_pred             ccceeEEEeeeEEEeCCe--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence            334469999999999754  79999 9999999999999999999999999999998864

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.79  E-value=1.9e-20  Score=141.20  Aligned_cols=112  Identities=18%  Similarity=0.176  Sum_probs=82.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE  105 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~  105 (199)
                      ++++|+++.|++.  +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+. +..++..             
T Consensus         1 l~~~~l~~~~~~~--~~l~~-~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~~-------------   63 (144)
T cd03221           1 IELENLSKTYGGK--LLLKD-ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTV-------------   63 (144)
T ss_pred             CEEEEEEEEECCc--eEEEe-eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCeE-------------
Confidence            4688999999764  69999 99999999999999999999999999999987765433 3222210             


Q ss_pred             CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------hHHHHHhhcccc
Q psy9640         106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------MEQAVHDVCKDI  168 (199)
Q Consensus       106 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------~~~~l~~~~p~~  168 (199)
                                              ..++-   .+||+||+||++||||+..                 ....+.+.+..+
T Consensus        64 ------------------------~i~~~---~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~  116 (144)
T cd03221          64 ------------------------KIGYF---EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY  116 (144)
T ss_pred             ------------------------EEEEE---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence                                    00000   0189999999999999975                 334444444444


Q ss_pred             ceeEEEEEeCCCC
Q psy9640         169 RIGKILIQTNKAT  181 (199)
Q Consensus       169 ~~~~~~~~~~~~~  181 (199)
                      ..+.+.++|+.+.
T Consensus       117 ~~til~~th~~~~  129 (144)
T cd03221         117 PGTVILVSHDRYF  129 (144)
T ss_pred             CCEEEEEECCHHH
Confidence            5678899998653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.79  E-value=2.7e-20  Score=144.99  Aligned_cols=55  Identities=20%  Similarity=0.219  Sum_probs=48.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|++.  +++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 i~~~~l~~~~~~~--~~l~~-i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (178)
T cd03229           1 LELKNVSKRYGQK--TVLND-VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG   55 (178)
T ss_pred             CEEEEEEEEECCe--EEEee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4689999999754  79999 9999999999999999999999999999998765543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.79  E-value=2.5e-20  Score=152.59  Aligned_cols=56  Identities=23%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++||++.|++.  .++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (253)
T TIGR02323         3 LLQVSGLSKSYGGG--KGCRD-VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG   58 (253)
T ss_pred             eEEEeeeEEEeCCc--eEeec-ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            37899999999754  68999 9999999999999999999999999999998876543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.79  E-value=4.1e-20  Score=148.64  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----cccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-----HADIIV  100 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-----~~~~~~  100 (199)
                      ++++|++++|++.  +++++ ++|++.+|++++|+|+||||||||+++|+|.+.+..+.+ ..++....     ......
T Consensus         1 l~l~~v~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~~~~~~~~~~~~~~~~~   76 (223)
T TIGR03740         1 LETKNLSKRFGKQ--TAVNN-ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI-IFDGHPWTRKDLHKIGSLI   76 (223)
T ss_pred             CEEEeEEEEECCE--EEEee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEeccccccccEEEEc
Confidence            4689999999754  79999 999999999999999999999999999999886654433 22221100     001111


Q ss_pred             CC-CCCCC-chHHHHHH----------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------
Q psy9640         101 PR-GGENC-VAIDLIVQ----------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------  156 (199)
Q Consensus       101 ~~-~~~~~-~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------  156 (199)
                      .. ..... ...+.+..          .+...+   ....+....+..+.+|||||+||++||||++.            
T Consensus        77 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~  153 (223)
T TIGR03740        77 ESPPLYENLTARENLKVHTTLLGLPDSRIDEVL---NIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTN  153 (223)
T ss_pred             CCCCccccCCHHHHHHHHHHHcCCCHHHHHHHH---HHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence            11 11100 11111100          010111   11122222344567899999999999999975            


Q ss_pred             ---------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                               +.+.+.+... .+.+.|.++||...
T Consensus       154 ~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~  186 (223)
T TIGR03740       154 GLDPIGIQELRELIRSFPE-QGITVILSSHILSE  186 (223)
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence                     4444544432 35678999998763

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.79  E-value=3.4e-20  Score=152.11  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=50.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 ~l~~~~l~~~~~~~--~il~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   56 (256)
T TIGR03873         1 GLRLSRVSWSAGGR--LIVDG-VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG   56 (256)
T ss_pred             CceEEeEEEEECCE--EEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            36889999999764  79999 9999999999999999999999999999998876543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=2.6e-20  Score=154.79  Aligned_cols=58  Identities=17%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             Ccccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++++||++.|++..   +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G   62 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG   62 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            378999999997531   369999 9999999999999999999999999999998876543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.79  E-value=4.7e-20  Score=142.71  Aligned_cols=135  Identities=17%  Similarity=0.122  Sum_probs=85.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-cccCCC-
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-IIVPRG-  103 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-~~~~~~-  103 (199)
                      ++++|++++|++...+++++ ++|++++|++++|+||||||||||+++|+|.+.+..+. +..++....... ....+. 
T Consensus         1 l~~~~l~~~~~~~~~~~l~~-i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i   78 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKD-VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNI   78 (171)
T ss_pred             CEEEEEEEEcCCCCcccccc-eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhE
Confidence            46889999997643468999 99999999999999999999999999999988765433 333322110000 000000 


Q ss_pred             CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHH
Q psy9640         104 GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVH  162 (199)
Q Consensus       104 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~  162 (199)
                      ..-......+...+.+.                  -|||||+||++||||+..                     +.+.+.
T Consensus        79 ~~~~~~~~~~~~t~~e~------------------lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~  140 (171)
T cd03228          79 AYVPQDPFLFSGTIREN------------------ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR  140 (171)
T ss_pred             EEEcCCchhccchHHHH------------------hhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence            00000000000000000                  099999999999999975                     444555


Q ss_pred             hhccccceeEEEEEeCCCCC
Q psy9640         163 DVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       163 ~~~p~~~~~~~~~~~~~~~~  182 (199)
                      +...  +.+.|.++||.+..
T Consensus       141 ~~~~--~~tii~~sh~~~~~  158 (171)
T cd03228         141 ALAK--GKTVIVIAHRLSTI  158 (171)
T ss_pred             HhcC--CCEEEEEecCHHHH
Confidence            5433  46779999987654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4.2e-20  Score=168.79  Aligned_cols=151  Identities=13%  Similarity=0.101  Sum_probs=96.5

Q ss_pred             Ccccccceeecccc---------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--
Q psy9640          25 GRDLEGVIKQYVNM---------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~---------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--   93 (199)
                      -++++||++.|+..         ...++++ +||++.+|++++|+|+||||||||+++|+|++.+..+. +..++...  
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~-vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~-I~~~g~~i~~  390 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEK-VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGE-IIFNGQRIDT  390 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEee-eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcE-EEECCEECCc
Confidence            48999999999621         1368999 99999999999999999999999999999998765433 33322100  


Q ss_pred             ----------cccccccCCC--CCCC-c-hHHHHH---------------HHHHHHHhcCceeecC-CceeeecceecCC
Q psy9640          94 ----------VHADIIVPRG--GENC-V-AIDLIV---------------QHIHSQLQAGVSVDMP-QGYTYEGKRCAVS  143 (199)
Q Consensus        94 ----------~~~~~~~~~~--~~~~-~-~~~~~~---------------~~l~~~~~~~~~~~~~-~~~~~~g~~lSgG  143 (199)
                                ..........  ..++ . ..+.+.               +.+.+.+.   .+.++ ...+..+.+||||
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~---~~gL~~~~~~~~~~~LSgG  467 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLE---RVGLLPEHAWRYPHEFSGG  467 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HcCCCHHHhhCCcccCCHH
Confidence                      0011111110  0111 0 111111               11111111   12332 2234567899999


Q ss_pred             eeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         144 KICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       144 q~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |+|||+||||++.                     +.+.+.++....+.++|+|+||.+
T Consensus       468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~  525 (623)
T PRK10261        468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA  525 (623)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            9999999999975                     566666665555788999999865

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=3.5e-20  Score=153.73  Aligned_cols=149  Identities=12%  Similarity=0.033  Sum_probs=92.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-----------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-----------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-----------   94 (199)
                      ++++||++.|++. ++++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+ .+..++....           
T Consensus         2 l~~~~l~~~~~~~-~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~   78 (275)
T PRK13639          2 LETRDLKYSYPDG-TEALKG-INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLLEVRK   78 (275)
T ss_pred             EEEEEEEEEeCCC-Ceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHHHHHh
Confidence            5789999999642 369999 9999999999999999999999999999998765543 3333322110           


Q ss_pred             ccccccCC---CCCCCchHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 HADIIVPR---GGENCVAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~~~~~---~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ........   ........+.+              .+.+...+.   .+.+....+..+.+|||||+||++||||++. 
T Consensus        79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~  155 (275)
T PRK13639         79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALK---AVGMEGFENKPPHHLSGGQKKRVAIAGILAMK  155 (275)
T ss_pred             heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            00010111   00000000111              011111111   1223233344677999999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +.+.+.+.... +.+.|.++||.+.
T Consensus       156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~  199 (275)
T PRK13639        156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDL  199 (275)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHH
Confidence                                44555554433 6788999998663

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=6.5e-20  Score=149.84  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..++++||++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus         2 ~~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14240          2 GKISVKDLDLFYGDF--QALKK-INLDIEENQVTALIGPSGCGKSTFLRTLNRMND   54 (250)
T ss_pred             CeEEEEEEEEEECCc--eeeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            358899999999754  79999 999999999999999999999999999999865

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=3e-20  Score=152.80  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ...++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus        11 ~~~l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         11 PSKIQVRNLNFYYGKF--HALKN-INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             CceEEEEEEEEEeCCe--EEeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            3458999999999754  79999 999999999999999999999999999999875

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=7.7e-20  Score=149.51  Aligned_cols=53  Identities=21%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+.
T Consensus         5 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~   57 (252)
T PRK14272          5 LSAQDVNIYYGDK--QAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLT   57 (252)
T ss_pred             EEEeeeEEEECCE--Eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            7889999999754  79999 99999999999999999999999999999988653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.79  E-value=3.9e-20  Score=165.81  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=46.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++++|++++|++.  .+|++ +||++.+|++++|+||||||||||+++|+|.+
T Consensus         1 l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269         1 IEVKNLTKKFDGK--EVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             CEEEEEEEEECCe--Eeeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            5789999999654  79999 99999999999999999999999999999987

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.79  E-value=7.9e-20  Score=152.93  Aligned_cols=145  Identities=11%  Similarity=0.041  Sum_probs=92.1

Q ss_pred             Ccccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cc
Q psy9640          25 GRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~   95 (199)
                      .++++|+++.|++ .  .+|++ |||++++|+++|++||||||||||+++|+|+..|..+. +..++...        ..
T Consensus         4 ~i~~~~l~k~~~~~~--~~l~~-vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~-i~i~G~~~~~~~~~~~~~   79 (293)
T COG1131           4 VIEVRNLTKKYGGDK--TALDG-VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE-ILVLGYDVVKEPAKVRRR   79 (293)
T ss_pred             eeeecceEEEeCCCC--EEEec-eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEEcCEeCccCHHHHHhh
Confidence            4678999999984 5  89999 99999999999999999999999999999999875433 32222110        00


Q ss_pred             cc-cccCCCCCCCch-------------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          96 AD-IIVPRGGENCVA-------------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        96 ~~-~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                      .. ++.....+...+                   .+.+.+.+ +      .+.++...+.....||+|||||++||+|++
T Consensus        80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l-~------~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~  152 (293)
T COG1131          80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL-E------LFGLEDKANKKVRTLSGGMKQRLSIALALL  152 (293)
T ss_pred             eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHH-H------HcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence            11 111111111000                   11111112 1      123332113345689999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.+....-+.+++..+|..+
T Consensus       153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~  198 (293)
T COG1131         153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE  198 (293)
T ss_pred             cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence            6                     555555555553366777777544

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.79  E-value=3.4e-20  Score=182.90  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=97.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe--------eeeecccchhcccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW--------VTLLSMDSFYRVHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~--------~~~i~~d~~~~~~~   96 (199)
                      .++++|++|.|++..+++|+| +||++++|++++|+||||||||||+++|+|.+.+..        +++++++.....  
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~-isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~--  712 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNG-ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN--  712 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC--
Confidence            699999999997644579999 999999999999999999999999999999887653        333444332111  


Q ss_pred             ccccCCC-CCCCchHHHHHHHHHHHHh-cCceeecCCceee----ecceecCCeeeeeeEEeccch--------------
Q psy9640          97 DIIVPRG-GENCVAIDLIVQHIHSQLQ-AGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--------------  156 (199)
Q Consensus        97 ~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--------------  156 (199)
                      ....++- ...+.+.+...+.+ +... ......+|.++++    .|.+||||||||++||||+..              
T Consensus       713 ~Ti~eNI~~g~~~~~~~~~~~~-~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL  791 (1522)
T TIGR00957       713 DSLRENILFGKALNEKYYQQVL-EACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV  791 (1522)
T ss_pred             CcHHHHhhcCCccCHHHHHHHH-HHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence            0000000 00111222222222 2211 1223345666554    678999999999999999975              


Q ss_pred             -------hHHHHHh---hccccceeEEEEEeCCCC
Q psy9640         157 -------MEQAVHD---VCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------~~~~l~~---~~p~~~~~~~~~~~~~~~  181 (199)
                             +.+.+.+   ...  +.+.|.++|+.+.
T Consensus       792 D~~~~~~i~~~l~~~~~~~~--~~tvIlvTH~~~~  824 (1522)
T TIGR00957       792 DAHVGKHIFEHVIGPEGVLK--NKTRILVTHGISY  824 (1522)
T ss_pred             CHHHHHHHHHHHhhhhhhhc--CCEEEEEeCChhh
Confidence                   3333322   222  3677999997664

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.79  E-value=5.8e-20  Score=149.41  Aligned_cols=55  Identities=20%  Similarity=0.130  Sum_probs=49.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         3 i~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   57 (242)
T TIGR03411         3 LYLEGLSVSFDGF--KALND-LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG   57 (242)
T ss_pred             EEEEeeEEEcCCe--EEeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            6899999999764  79999 9999999999999999999999999999998866543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.79  E-value=3.1e-20  Score=153.62  Aligned_cols=147  Identities=13%  Similarity=0.070  Sum_probs=91.0

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------------
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------------   94 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------------   94 (199)
                      .++|+++.|...  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++....            
T Consensus        26 ~~~~~~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~-i~i~g~~~~~~~~~~~~~~~~  101 (269)
T cd03294          26 SKEEILKKTGQT--VGVND-VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK-VLIDGQDIAAMSRKELRELRR  101 (269)
T ss_pred             hhhhhhhhcCCc--eEeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEccccChhhhhhhhc
Confidence            567888888655  78999 99999999999999999999999999999988765433 333322110            


Q ss_pred             -ccccccC-CCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 -HADIIVP-RGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 -~~~~~~~-~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                       ....... ........ .+.+              .+.+.+.+.   .+.+....+..+.+|||||+||++||||++. 
T Consensus       102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~  178 (269)
T cd03294         102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE---LVGLEGWEHKYPDELSGGMQQRVGLARALAVD  178 (269)
T ss_pred             CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence             0011111 11111101 1111              011111111   1233333344667899999999999999976 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                          +.+.+.+....-+.+.|.++||.+
T Consensus       179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~  222 (269)
T cd03294         179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD  222 (269)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                                444454444333578899999865

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.79  E-value=9.3e-20  Score=146.89  Aligned_cols=54  Identities=22%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -+.++||+++|++.  .++++++ +||++++|++++|+||||||||||+++|+|.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILND-VSLHVESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cceeecceeeeecCccccccccC-ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            46799999999765  3689999 999999999999999999999999999999987

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4.8e-20  Score=164.85  Aligned_cols=148  Identities=11%  Similarity=0.076  Sum_probs=93.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~   94 (199)
                      -++++|++++|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+..+.+ ..++...          .
T Consensus         5 ~l~~~~l~~~~~~~--~il~~-vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i-~~~g~~i~~~~~~~~~~~   80 (510)
T PRK09700          5 YISMAGIGKSFGPV--HALKS-VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI-TINNINYNKLDHKLAAQL   80 (510)
T ss_pred             eEEEeeeEEEcCCe--EEeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE-EECCEECCCCCHHHHHHC
Confidence            37899999999754  79999 999999999999999999999999999999987654333 2221100          0


Q ss_pred             cccccc-CCCCCCCc----------------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEE
Q psy9640          95 HADIIV-PRGGENCV----------------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        95 ~~~~~~-~~~~~~~~----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvaia  151 (199)
                      ...... ........                      ......+.+.+.+.   .+.+....+....+|||||+|||+||
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgG~~qrv~ia  157 (510)
T PRK09700         81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLL---RVGLKVDLDEKVANLSISHKQMLEIA  157 (510)
T ss_pred             CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHH---HcCCCCCcccchhhCCHHHHHHHHHH
Confidence            000000 00000000                      00111111211121   12333333556779999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||++.                     +.+.+.++... +.++|.++||.+
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~  206 (510)
T PRK09700        158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLA  206 (510)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence            99975                     55555554333 678899999865

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.79  E-value=5.5e-20  Score=154.44  Aligned_cols=146  Identities=12%  Similarity=0.039  Sum_probs=92.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~   97 (199)
                      ++++|++++|++.  .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+. +..++...        ....
T Consensus         3 l~~~~l~~~~~~~--~~l~~-is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~-i~i~g~~~~~~~~~~~~~ig   78 (301)
T TIGR03522         3 IRVSSLTKLYGTQ--NALDE-VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS-VQVCGEDVLQNPKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEECCE--EEEEE-eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccChHHHHhceE
Confidence            6899999999754  79999 99999999999999999999999999999988766543 33332111        0011


Q ss_pred             ccc-CCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIV-PRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~-~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ... ......... .+.+              .+.+...+.   ...+....+.....|||||+||++||||++.     
T Consensus        79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  155 (301)
T TIGR03522        79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE---LVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL  155 (301)
T ss_pred             EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            111 111111101 1111              111111111   1123332344567899999999999999976     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.+...  +.+.|.++|+.+
T Consensus       156 iLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~  193 (301)
T TIGR03522       156 ILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ  193 (301)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH
Confidence                            4455555432  467799998665

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=4.8e-20  Score=153.07  Aligned_cols=151  Identities=14%  Similarity=0.137  Sum_probs=93.9

Q ss_pred             cccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          26 RDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        26 i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      ++++|+++.|++. ..++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.+ ..++....         .
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~-v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i-~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          5 LEVENLVFKYEKESDVNQLNG-VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-KIDGELLTAENVWNLRRK   82 (277)
T ss_pred             EEEEEEEEEcCCCCcCeeeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE-EECCEECCcCCHHHHhcc
Confidence            7899999999743 2368999 999999999999999999999999999999987654432 22221100         0


Q ss_pred             cccccCC-C--CCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          96 ADIIVPR-G--GENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~~~~-~--~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ....... .  .....              ..+...+.+...+.   .+.+....+..+.+|||||+||++||||+..  
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p  159 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALL---AVNMLDFKTREPARLSGGQKQRVAVAGIIALRP  159 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHH---HCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            0110000 0  00000              00111111111111   1122222344567899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.++...-+.+.|.++||...
T Consensus       160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~  203 (277)
T PRK13642        160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE  203 (277)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                               5555555554446788999997664

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.79  E-value=5.9e-20  Score=148.06  Aligned_cols=148  Identities=12%  Similarity=0.069  Sum_probs=92.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc--cccccCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH--ADIIVPRG  103 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~--~~~~~~~~  103 (199)
                      +.++|+++.|...  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++.....  ........
T Consensus        23 l~~~~~~~~~~~~--~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~   98 (224)
T cd03220          23 LGILGRKGEVGEF--WALKD-VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPE   98 (224)
T ss_pred             hhhhhhhhhcCCe--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCC
Confidence            7788888888765  79999 9999999999999999999999999999998776544 33333321100  00000000


Q ss_pred             --C-CC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640         104 --G-EN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------  156 (199)
Q Consensus       104 --~-~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------  156 (199)
                        . .+        ........+.+.+.+.   ...++...+....+|||||+||++||||++.                
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~  175 (224)
T cd03220          99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIE---FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA  175 (224)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence              0 00        0000111111111111   1223333344567899999999999999975                


Q ss_pred             -----hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -----MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -----~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                           +.+.+.+.... +.+.|.++||.+.
T Consensus       176 ~~~~~~~~~l~~~~~~-~~tiii~sH~~~~  204 (224)
T cd03220         176 AFQEKCQRRLRELLKQ-GKTVILVSHDPSS  204 (224)
T ss_pred             HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence                 44455554433 5678999998664

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.78  E-value=5.6e-20  Score=145.73  Aligned_cols=139  Identities=10%  Similarity=-0.031  Sum_probs=86.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc-CCCeeeeecccchhcccccc-cc-CC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYRVHADI-IV-PR  102 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l-~~~~~~~i~~d~~~~~~~~~-~~-~~  102 (199)
                      ++++|++++|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.. .++..|.+..++........ .. ..
T Consensus         1 l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~   77 (200)
T cd03217           1 LEIKDLHVSVGGK--EILKG-VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL   77 (200)
T ss_pred             CeEEEEEEEeCCE--Eeeec-cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence            4689999999754  79999 99999999999999999999999999999985 23444444444321110000 00 00


Q ss_pred             -CCCCCchHHHHH-HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHH
Q psy9640         103 -GGENCVAIDLIV-QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQ  159 (199)
Q Consensus       103 -~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~  159 (199)
                       ..+-+....... ..+...+            ...+.+|||||+||++||||+..                     +.+
T Consensus        78 ~i~~v~q~~~~~~~~~~~~~l------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  145 (200)
T cd03217          78 GIFLAFQYPPEIPGVKNADFL------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAE  145 (200)
T ss_pred             cEEEeecChhhccCccHHHHH------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence             000000000000 0000000            11224799999999999999975                     445


Q ss_pred             HHHhhccccceeEEEEEeCCC
Q psy9640         160 AVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       160 ~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .+.+.... +.+.|.++|+.+
T Consensus       146 ~L~~~~~~-~~tiii~sh~~~  165 (200)
T cd03217         146 VINKLREE-GKSVLIITHYQR  165 (200)
T ss_pred             HHHHHHHC-CCEEEEEecCHH
Confidence            55554332 567799999765

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=5.1e-20  Score=157.75  Aligned_cols=145  Identities=12%  Similarity=0.049  Sum_probs=90.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      |++ |++++|++.  . + + +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++...            
T Consensus         2 l~~-~l~k~~~~~--~-~-~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I-~~~g~~~~~~~~~~~~~~~   74 (352)
T PRK11144          2 LEL-NFKQQLGDL--C-L-T-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI-VLNGRVLFDAEKGICLPPE   74 (352)
T ss_pred             eEE-EEEEEeCCE--E-E-E-EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEEccccccccccchh
Confidence            455 899999653  2 2 8 999999999999999999999999999999887654433 3322110            


Q ss_pred             -cccccccCC-CCC-CCchHHHHH--------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          94 -VHADIIVPR-GGE-NCVAIDLIV--------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        94 -~~~~~~~~~-~~~-~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                       ......... ... +....+.+.        +.+.+.+.   .+.+....+..+.+|||||+|||+||||++.      
T Consensus        75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL  151 (352)
T PRK11144         75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVA---LLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL  151 (352)
T ss_pred             hCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHH---HcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence             000111111 001 100011110        11111111   1233333345677999999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                     +.+.+.+.....+.++|.++||.+
T Consensus       152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~  190 (352)
T PRK11144        152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD  190 (352)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence                           555666665555678899999875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.78  E-value=5.4e-20  Score=164.56  Aligned_cols=148  Identities=15%  Similarity=0.085  Sum_probs=93.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~   94 (199)
                      -++++|++++|++.  .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+ ..++...          .
T Consensus        11 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~   86 (510)
T PRK15439         11 LLCARSISKQYSGV--EVLKG-IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL-EIGGNPCARLTPAKAHQL   86 (510)
T ss_pred             eEEEEeEEEEeCCc--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHHHhC
Confidence            48999999999754  79999 999999999999999999999999999999887654433 3222110          0


Q ss_pred             cccc-ccCCCCCCC-chHH----------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          95 HADI-IVPRGGENC-VAID----------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        95 ~~~~-~~~~~~~~~-~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .... ......... ...+          ...+.+.+.+.   .+.+....+....+|||||+|||+||||++.      
T Consensus        87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll  163 (510)
T PRK15439         87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA---ALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI  163 (510)
T ss_pred             CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHH---HcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            0001 111111000 0000          11111211111   1233333345677899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                     +.+.+.+.... +.+.|.++||.+
T Consensus       164 LDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~  201 (510)
T PRK15439        164 LDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLP  201 (510)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence                           44455544333 678899999865

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.78  E-value=3e-20  Score=169.73  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|+++.|...  ..+++++ +||++++|++++|+|+||||||||+++|+|++.+..+
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~-is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G   71 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG   71 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEe-eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe
Confidence            48999999999632  2479999 9999999999999999999999999999999876543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=6.8e-20  Score=149.97  Aligned_cols=53  Identities=25%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus         3 ~~l~~~nl~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256          3 NKVKLEQLNVHFGKN--HAVKD-VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             cEEEEEEEEEEeCCe--eEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            358899999999754  79999 999999999999999999999999999999875

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=4.6e-20  Score=149.63  Aligned_cols=56  Identities=14%  Similarity=0.207  Sum_probs=50.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         5 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   60 (237)
T PRK11614          5 MLSFDKVSAHYGKI--QALHE-VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG   60 (237)
T ss_pred             EEEEEeEEEeeCCc--eeeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            37899999999754  79999 9999999999999999999999999999998876543

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.78  E-value=6.8e-20  Score=146.85  Aligned_cols=54  Identities=13%  Similarity=0.105  Sum_probs=48.3

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.|+.+.|+.. .+++++ +||++.+|++++|+|+||||||||+++|+|.+.+..
T Consensus         2 ~~~~~~~~~~~~-~~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~   55 (218)
T cd03290           2 QVTNGYFSWGSG-LATLSN-INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE   55 (218)
T ss_pred             eeeeeEEecCCC-Ccceee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence            577899999754 479999 999999999999999999999999999999986654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.1e-19  Score=150.39  Aligned_cols=52  Identities=23%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus        24 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         24 VFDTQNLNLWYGED--HALKN-INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             EEEEeeeEEEECCc--ceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            48999999999754  79999 999999999999999999999999999999886

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=6.9e-20  Score=149.86  Aligned_cols=54  Identities=20%  Similarity=0.236  Sum_probs=49.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++++|++++|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+.
T Consensus         4 ~l~~~~l~~~~~~~--~il~~-~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~   57 (251)
T PRK14249          4 KIKIRGVNFFYHKH--QVLKN-INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV   57 (251)
T ss_pred             eEEEEEEEEEECCe--eEecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence            47899999999754  79999 99999999999999999999999999999988764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.78  E-value=1.1e-19  Score=146.21  Aligned_cols=58  Identities=14%  Similarity=0.198  Sum_probs=50.1

Q ss_pred             cccccceeecccc-----ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNM-----VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~-----~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      ++++|+++.|+..     ..+++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+.
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   64 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKN-VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR   64 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEec-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            6789999999631     2369999 99999999999999999999999999999998765443

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=9.8e-20  Score=148.79  Aligned_cols=53  Identities=21%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|++.+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   55 (250)
T PRK14262          3 IIEIENFSAYYGEK--KAVKN-VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH   55 (250)
T ss_pred             eEEEEeeEEEeCCc--eeEee-eeEeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence            37899999999754  79999 9999999999999999999999999999998864

>KOG0054|consensus

Probab=99.78  E-value=6.6e-20  Score=175.75  Aligned_cols=154  Identities=15%  Similarity=0.151  Sum_probs=117.0

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-----
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-----   97 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-----   97 (199)
                      .++|+++|++.+|.....++|++ +|++|++||.|||+|.+|||||||+..|..+..+.. |-|..|+......+     
T Consensus      1136 ~G~I~f~~~~~RYrp~lp~VLk~-is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~-G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKG-ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE-GEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred             CCeEEEEEeEEEeCCCCcchhcC-ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC-CeEEEcCeecccccHHHHH
Confidence            35799999999997777799999 999999999999999999999999999998887643 33333332211111     


Q ss_pred             -----cccC--------CC---CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          98 -----IIVP--------RG---GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        98 -----~~~~--------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                           .+++        |.   ..++.+.++++++++..........+|.+++.    .|.++|-||||.++||||++. 
T Consensus      1214 srlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred             hcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence                 1111        11   12245668899999666555555577877776    688999999999999999986 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                          +++.+++.+.+.+|  +-|.|.=.
T Consensus      1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTV--ltIAHRl~ 1335 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEFKDCTV--LTIAHRLN 1335 (1381)
T ss_pred             CCEEEEecccccCChHHHHHHHHHHHHHhcCCeE--EEEeeccc
Confidence                                88899999999888  77777433

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.2e-19  Score=149.76  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=48.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++||++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|++.
T Consensus        10 ~l~i~~v~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   61 (264)
T PRK14243         10 VLRTENLNVYYGSF--LAVKN-VWLDIPKNQITAFIGPSGCGKSTILRCFNRLND   61 (264)
T ss_pred             EEEEeeeEEEECCE--EEeec-ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            48999999999754  79999 999999999999999999999999999999876

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=8.2e-20  Score=152.29  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .-++++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus        38 ~~l~i~~l~~~~~~~--~il~~-is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   91 (285)
T PRK14254         38 TVIEARDLNVFYGDE--QALDD-VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL   91 (285)
T ss_pred             ceEEEEEEEEEECCE--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence            348999999999754  79999 9999999999999999999999999999999863

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.78  E-value=1.2e-19  Score=147.87  Aligned_cols=61  Identities=11%  Similarity=0.084  Sum_probs=51.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeeccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMD   89 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d   89 (199)
                      ++++|+++.|++.  +++++ +|+++++|++++|+|+||||||||+++|+|... ++..|.+..+
T Consensus         2 i~~~nl~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~   63 (248)
T PRK09580          2 LSIKDLHVSVEDK--AILRG-LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK   63 (248)
T ss_pred             eEEEEEEEEeCCe--eeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEEC
Confidence            6789999999754  79999 999999999999999999999999999999852 3344444443

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.78  E-value=1e-19  Score=162.42  Aligned_cols=149  Identities=12%  Similarity=0.069  Sum_probs=93.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------RV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~~   94 (199)
                      -++++|++++|++.  ++|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.+ ..++..          ..
T Consensus         4 ~i~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i-~~~g~~~~~~~~~~~~~~   79 (501)
T PRK10762          4 LLQLKGIDKAFPGV--KALSG-AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI-LYLGKEVTFNGPKSSQEA   79 (501)
T ss_pred             eEEEeeeEEEeCCe--EEeee-eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCCCCHHHHHhC
Confidence            37899999999754  79999 999999999999999999999999999999987654333 222210          00


Q ss_pred             ccccccCC-CCCC-------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          95 HADIIVPR-GGEN-------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        95 ~~~~~~~~-~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                      ........ ....                   ........+.+.+.+.   .+.+....+....+|||||+||++||||+
T Consensus        80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al  156 (501)
T PRK10762         80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLA---RLNLRFSSDKLVGELSIGEQQMVEIAKVL  156 (501)
T ss_pred             CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHH---HcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence            00000000 0000                   0001111111211121   12333333445678999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +.                     +.+.+.+.... +.++|.++||.+.
T Consensus       157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~  203 (501)
T PRK10762        157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKE  203 (501)
T ss_pred             hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence            75                     44445554333 6788999998653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2e-19  Score=148.61  Aligned_cols=53  Identities=19%  Similarity=0.183  Sum_probs=48.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .-++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|+..
T Consensus        20 ~~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   72 (268)
T PRK14248         20 HILEVKDLSIYYGEK--RAVND-ISMDIEKHAVTALIGPSGCGKSTFLRSINRMND   72 (268)
T ss_pred             ceEEEEEEEEEeCCc--eeeec-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            358999999999754  79999 999999999999999999999999999999753

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.1e-19  Score=148.55  Aligned_cols=52  Identities=21%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|++++|+..  ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus         4 ~l~~~~l~~~~~~~--~~l~~-~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251          4 IISAKDVHLSYGNY--EALHG-ISLDFEEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eEEEEeeEEEECCe--eeeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            37899999999754  79999 999999999999999999999999999999885

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.78  E-value=8.4e-20  Score=146.58  Aligned_cols=150  Identities=15%  Similarity=0.091  Sum_probs=92.9

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------   94 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------   94 (199)
                      ++++|+++.|++.  .+.++++ +||++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....         
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~-vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~   79 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS-LKVLGQELYGASEKELVQ   79 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEhHhcCHhHHHH
Confidence            5789999999642  1479999 99999999999999999999999999999987665433 333322110         


Q ss_pred             ---ccccccCC-CCCCC----------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          95 ---HADIIVPR-GGENC----------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        95 ---~~~~~~~~-~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                         ........ .....                ...+.....+.+.+.   .+.+....+..+.+||+||+||++||||+
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS~G~~qrv~laral  156 (220)
T TIGR02982        80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLE---AVGLGDHLDYYPHNLSGGQKQRVAIARAL  156 (220)
T ss_pred             HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence               00000111 00000                001111111111111   12232233446678999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +.                     +...+.+....-..+.|.++||..
T Consensus       157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~  203 (220)
T TIGR02982       157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR  203 (220)
T ss_pred             hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            75                     445555544333578899999875

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.78  E-value=1.4e-19  Score=153.75  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=102.5

Q ss_pred             ccCcccccceeecc--ccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe----eeeecccchhc-cc
Q psy9640          23 ARGRDLEGVIKQYV--NMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW----VTLLSMDSFYR-VH   95 (199)
Q Consensus        23 ~~~i~l~nvs~~y~--~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~----~~~i~~d~~~~-~~   95 (199)
                      +.-++++|+++.|.  +....++++ |||++.+||.+||+|+||||||-.++.+++++..+.    .|.+..++... ..
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~-isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKG-ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeecc-ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            34588999999985  334689999 999999999999999999999999999999996531    12222222111 00


Q ss_pred             c------------ccccCC--CCCCCc-hH-HHHHHHH---------------HHHHhcCceeecCC---ceeeecceec
Q psy9640          96 A------------DIIVPR--GGENCV-AI-DLIVQHI---------------HSQLQAGVSVDMPQ---GYTYEGKRCA  141 (199)
Q Consensus        96 ~------------~~~~~~--~~~~~~-~~-~~~~~~l---------------~~~~~~~~~~~~~~---~~~~~g~~lS  141 (199)
                      .            .+.+..  ...|+. .. .++.+.+               .+.+.   .+.+|.   .++..|++||
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~---~VgI~~p~~rl~~yPHeLS  159 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE---LVGIPEPEKRLDAYPHELS  159 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HcCCCchhhhhhhCCcccC
Confidence            0            011110  011211 00 1121111               12222   233433   3555799999


Q ss_pred             CCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         142 VSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       142 gGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||||||.||.|+..                     +.++++++..+.+.+.++||||=.
T Consensus       160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~  219 (534)
T COG4172         160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG  219 (534)
T ss_pred             cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH
Confidence            999999999999964                     788899999999999999999744

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.5e-19  Score=148.56  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus         7 ~l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~   59 (259)
T PRK14260          7 AIKVKDLSFYYNTS--KAIEG-ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL   59 (259)
T ss_pred             eEEEEEEEEEECCe--Eeecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            58899999999754  79999 9999999999999999999999999999998864

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.2e-19  Score=146.63  Aligned_cols=53  Identities=19%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus         3 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (249)
T PRK14253          3 KFNIENLDLFYGEN--QALKS-INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL   55 (249)
T ss_pred             eEEEeccEEEECCe--eeeec-ceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            47899999999754  79999 9999999999999999999999999999998875

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.77  E-value=1.1e-19  Score=152.77  Aligned_cols=139  Identities=12%  Similarity=0.067  Sum_probs=84.4

Q ss_pred             eccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------cccccc-cCCCC
Q psy9640          34 QYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHADII-VPRGG  104 (199)
Q Consensus        34 ~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~~~~-~~~~~  104 (199)
                      +|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...        ...... .....
T Consensus         2 ~y~~~--~~l~~-vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~   77 (302)
T TIGR01188         2 VYGDF--KAVDG-VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT-ARVAGYDVVREPRKVRRSIGIVPQYASV   77 (302)
T ss_pred             eeCCe--eEEee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEcccCHHHHHhhcEEecCCCCC
Confidence            45443  79999 99999999999999999999999999999998776543 33332110        001111 11111


Q ss_pred             CCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640         105 ENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus       105 ~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      ..... .+.+              .+.+.+.+.   .+.+....+....+|||||+||++||||++.             
T Consensus        78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  154 (302)
T TIGR01188        78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLE---LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG  154 (302)
T ss_pred             CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            11101 1111              011111111   1233333344677899999999999999975             


Q ss_pred             --------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                              +.+.+.+.... +.++|.++|+..
T Consensus       155 LD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~  185 (302)
T TIGR01188       155 LDPRTRRAIWDYIRALKEE-GVTILLTTHYME  185 (302)
T ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEECCCHH
Confidence                    44555554333 678899999764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.8e-19  Score=148.84  Aligned_cols=53  Identities=17%  Similarity=0.148  Sum_probs=49.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -++++|++++|+..  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+
T Consensus        20 ~l~~~nl~~~~~~~--~il~~-vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   72 (267)
T PRK14237         20 ALSTKDLHVYYGKK--EAIKG-IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT   72 (267)
T ss_pred             EEEEeeEEEEECCe--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence            58999999999653  79999 9999999999999999999999999999998864

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.77  E-value=8.8e-20  Score=151.20  Aligned_cols=53  Identities=11%  Similarity=0.112  Sum_probs=48.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++++|++++|.+.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+.
T Consensus         2 l~~~nl~~~~~~~--~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~   54 (272)
T PRK13547          2 LTADHLHVARRHR--AILRD-LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG   54 (272)
T ss_pred             eEEEEEEEEECCE--eEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence            6789999999754  79999 99999999999999999999999999999998765

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.77  E-value=1.6e-19  Score=161.18  Aligned_cols=148  Identities=14%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-Ceeeeecccchhc----------c
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-PWVTLLSMDSFYR----------V   94 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-~~~~~i~~d~~~~----------~   94 (199)
                      ++++|++++|++.  +++++ +||++++|++++|+||||||||||+++|+|.+.+ +..|.+..++...          .
T Consensus         2 l~i~~l~~~~~~~--~il~~-isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         2 LEMKGIVKTFGGV--KALDG-IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             EEEEeEEEEeCCe--Eeecc-eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            6789999999754  79999 9999999999999999999999999999998865 2344444333110          0


Q ss_pred             ccccc-cCCCCCCC-------------------chHHHHHHHHHHHHhcCceeecCCce-eeecceecCCeeeeeeEEec
Q psy9640          95 HADII-VPRGGENC-------------------VAIDLIVQHIHSQLQAGVSVDMPQGY-TYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        95 ~~~~~-~~~~~~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~~lSgGq~QrvaiaRA  153 (199)
                      ..... ........                   ...+...+.+.+.+.   ...+.... +....+|||||+|||+||||
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgG~~qrv~iA~a  155 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLR---ELQLDADNVTRPVGDYGGGQQQLVEIAKA  155 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHH---HcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence            00010 00000000                   001111111211111   11222222 23466899999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +..                     +.+.+.++. .-+.++|.++||.+
T Consensus       156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~~  202 (500)
T TIGR02633       156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKLN  202 (500)
T ss_pred             HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcHH
Confidence            975                     445555543 33678899999865

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=7.6e-20  Score=149.61  Aligned_cols=51  Identities=18%  Similarity=0.148  Sum_probs=47.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++++||+++|+..  +++++ +||++.+|++++|+|+||||||||+++|+|...
T Consensus         6 l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (252)
T PRK14255          6 ITSSDVHLFYGKF--EALKG-IDLDFNQNEITALIGPSGCGKSTYLRTLNRMND   56 (252)
T ss_pred             EEEEeEEEEECCe--eEEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            7899999999753  79999 999999999999999999999999999999764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.77  E-value=1.2e-19  Score=162.59  Aligned_cols=153  Identities=14%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             Ccccccceeeccc---cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc-cch----h----
Q psy9640          25 GRDLEGVIKQYVN---MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM-DSF----Y----   92 (199)
Q Consensus        25 ~i~l~nvs~~y~~---~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~-d~~----~----   92 (199)
                      -++++|+++.|++   ..+++|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+... +..    .    
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~  357 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDN-VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP  357 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEee-EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence            4999999999953   22469999 999999999999999999999999999999987655433221 110    0    


Q ss_pred             ------ccccccc-cCCCCCCC-chHHHHH-------------HHHHHHHhcCceeecCC-----ceeeecceecCCeee
Q psy9640          93 ------RVHADII-VPRGGENC-VAIDLIV-------------QHIHSQLQAGVSVDMPQ-----GYTYEGKRCAVSKIC  146 (199)
Q Consensus        93 ------~~~~~~~-~~~~~~~~-~~~~~~~-------------~~l~~~~~~~~~~~~~~-----~~~~~g~~lSgGq~Q  146 (199)
                            +...... ........ ...+.+.             ..+.+.+.   ...++.     ..+..+.+|||||+|
T Consensus       358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~~~LSgGq~q  434 (520)
T TIGR03269       358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLK---MVGFDEEKAEEILDKYPDELSEGERH  434 (520)
T ss_pred             hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH---hCCCCCccchhhhhCChhhCCHHHHH
Confidence                  0001111 11111111 1111111             11111111   122321     234567799999999


Q ss_pred             eeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         147 GVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       147 rvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ||+||||++.                     +.+.+.++....+.++|+++||.+.
T Consensus       435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~  490 (520)
T TIGR03269       435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF  490 (520)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence            9999999975                     5555555545456788999998763

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.9e-19  Score=149.41  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..++++||+++|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus        20 ~~l~i~nl~~~~~~~--~il~~-vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p   73 (276)
T PRK14271         20 PAMAAVNLTLGFAGK--TVLDQ-VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK   73 (276)
T ss_pred             cEEEEeeEEEEECCE--EEeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence            358999999999754  79999 9999999999999999999999999999998875

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.1e-19  Score=163.25  Aligned_cols=145  Identities=12%  Similarity=0.046  Sum_probs=91.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-  103 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-  103 (199)
                      -++++|++++|++.  .+|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+ ..++.. ....+..... 
T Consensus       319 ~l~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i-~~~~~~-~i~~~~q~~~~  393 (530)
T PRK15064        319 ALEVENLTKGFDNG--PLFKN-LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-KWSENA-NIGYYAQDHAY  393 (530)
T ss_pred             eEEEEeeEEeeCCc--eeecC-cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCce-EEEEEcccccc
Confidence            48999999999754  69999 999999999999999999999999999999886654332 222110 0000000000 


Q ss_pred             -CCC--------------CchHHHHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch-----------
Q psy9640         104 -GEN--------------CVAIDLIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET-----------  156 (199)
Q Consensus       104 -~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~-----------  156 (199)
                       ...              ....+.+.+.+ ..      ..++ ...+..+.+|||||+||++||||++.           
T Consensus       394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l-~~------~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt  466 (530)
T PRK15064        394 DFENDLTLFDWMSQWRQEGDDEQAVRGTL-GR------LLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT  466 (530)
T ss_pred             cCCCCCcHHHHHHHhccCCccHHHHHHHH-HH------cCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence             000              00011111111 11      1221 12344577999999999999999975           


Q ss_pred             ------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                            ..+.+.+.+.....++|.++||.+.
T Consensus       467 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~  497 (530)
T PRK15064        467 NHMDMESIESLNMALEKYEGTLIFVSHDREF  497 (530)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence                  2333333333334588999998763

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2e-19  Score=150.04  Aligned_cols=152  Identities=12%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC--C--Ceeeeecccchhcc------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN--V--PWVTLLSMDSFYRV------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~--~~~~~i~~d~~~~~------   94 (199)
                      -++++|++++|++.  .++++ +||++++|++++|+|+||||||||+++|+|+..  +  +..|.+..++....      
T Consensus        39 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         39 HVVAKNFSIYYGEF--EAVKK-VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             EEEEeeeEEEECCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            48999999999754  69999 999999999999999999999999999999754  3  24444444432110      


Q ss_pred             -----ccccccCC-CCCCCchHHHH---------------HHHHHHHHhcCc-eeecCCceeeecceecCCeeeeeeEEe
Q psy9640          95 -----HADIIVPR-GGENCVAIDLI---------------VQHIHSQLQAGV-SVDMPQGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        95 -----~~~~~~~~-~~~~~~~~~~~---------------~~~l~~~~~~~~-~~~~~~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                           ........ ........+.+               .+.+...+.... ...+....+..+..|||||+||++|||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr  195 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR  195 (286)
T ss_pred             HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence                 00011111 11100000100               111111111000 001112234467789999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      |++.                     +.+.+.+...  +.++|+++||.+.
T Consensus       196 aL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~  243 (286)
T PRK14275        196 TLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQ  243 (286)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHH
Confidence            9975                     5555555543  3577999997663

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.77  E-value=1.6e-19  Score=144.35  Aligned_cols=147  Identities=12%  Similarity=0.113  Sum_probs=89.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      ++++|+++.|+.    .+.+ +||++.+|++++|+|+||||||||+++|+|.+.+..+.+. .++...       .....
T Consensus         1 ~~~~~l~~~~~~----~~~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~i~~   74 (213)
T TIGR01277         1 LALDKVRYEYEH----LPME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK-VNDQSHTGLAPYQRPVSM   74 (213)
T ss_pred             CeEEeeeEEeCC----ccee-eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEcccCChhccceEE
Confidence            468999999963    4578 9999999999999999999999999999998876544332 222110       00001


Q ss_pred             ccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .... ..... ...+.+              .+.+.+.+.   ...+....+..+.+|||||+||++||||+..      
T Consensus        75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  151 (213)
T TIGR01277        75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ---QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL  151 (213)
T ss_pred             EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHH---HcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            0000 01000 000111              011111111   1222222344567899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+....-+.+.|.++|+.+.
T Consensus       152 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~  191 (213)
T TIGR01277       152 LDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD  191 (213)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                           4455555544335778999998763

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.77  E-value=6.8e-20  Score=142.99  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=81.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch--------hccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--------YRVHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~--------~~~~~~   97 (199)
                      +++.+++++|+.. ..+++| |||++++|+++||.|+|||||||++|+|+.++-|+++.+ ..|++        ++...+
T Consensus         2 l~v~~l~K~y~~~-v~Avrd-VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v-~idg~d~~~~p~~vrr~IG   78 (245)
T COG4555           2 LEVTDLTKSYGSK-VQAVRD-VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV-TIDGVDTVRDPSFVRRKIG   78 (245)
T ss_pred             eeeeehhhhccCH-Hhhhhh-eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceE-EEeecccccChHHHhhhcc
Confidence            5788999999874 469999 999999999999999999999999999999998875433 22222        222222


Q ss_pred             ccc-CCCCCCCchHHHHHHH-----------HHHHHh-cCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          98 IIV-PRGGENCVAIDLIVQH-----------IHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        98 ~~~-~~~~~~~~~~~~~~~~-----------l~~~~~-~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ..+ .++.+...+.++-+..           ++.... ..+..++....+.....+|.||||||+||||+..
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh  150 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVH  150 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhc
Confidence            222 1111211111111000           000000 0122344444455667899999999999999976

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.6e-19  Score=147.11  Aligned_cols=52  Identities=25%  Similarity=0.243  Sum_probs=48.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus        12 ~l~i~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         12 VYQINGMNLWYGQH--HALKN-INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             eEEEeeEEEEECCe--eeEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            48999999999754  79999 999999999999999999999999999999986

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=5e-20  Score=147.44  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=98.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc-
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD-   97 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~-   97 (199)
                      +++++++++|.+-  .++++ |||++++|++++|+|||||||||++++|.|.+.|+.+.++..+.....       ... 
T Consensus         5 L~v~~l~k~FGGl--~Al~~-Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           5 LEVRGLSKRFGGL--TAVND-VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             eeeccceeecCCE--EEEec-eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            6789999999887  79999 999999999999999999999999999999999887665544321100       000 


Q ss_pred             ---cccCCCCCCCc--------------------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeee
Q psy9640          98 ---IIVPRGGENCV--------------------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGV  148 (199)
Q Consensus        98 ---~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrv  148 (199)
                         ++..+...+-.                          ..++..+.....+   ..+.+....+....+||+||+.|+
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~L---e~vgL~~~a~~~A~~LsyG~qR~L  158 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL---EFVGLGELADRPAGNLSYGQQRRL  158 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHH---HHcCCchhhcchhhcCChhHhHHH
Confidence               01111111100                          1111111111222   234555544556678999999999


Q ss_pred             eEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .||||+..                     +.+.+.++-..-.++++.|-||=.
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~  211 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK  211 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH
Confidence            99999975                     444444444445689999999754

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.77  E-value=2.1e-19  Score=145.41  Aligned_cols=149  Identities=17%  Similarity=0.139  Sum_probs=91.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~   98 (199)
                      +.++|++++|++.  +++++ +++++++|++++|+|+||||||||+++|+|.+.+..+. +..++....       ....
T Consensus         1 l~~~~l~~~~~~~--~il~~-i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~-i~~~g~~~~~~~~~~~~i~~   76 (232)
T cd03300           1 IELENVSKFYGGF--VALDG-VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE-ILLDGKDITNLPPHKRPVNT   76 (232)
T ss_pred             CEEEeEEEEeCCe--eeecc-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEEcCcCChhhcceEE
Confidence            4689999999764  79999 99999999999999999999999999999998765443 323322110       0111


Q ss_pred             ccCC-CCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IVPR-GGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~~~-~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .... ..... ...+.+              ...+...+.   .+.+....+..+..||+||+||++||||+..      
T Consensus        77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll  153 (232)
T cd03300          77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD---LVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL  153 (232)
T ss_pred             EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            1111 11100 000111              011111111   1223223344667899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+....-+.+.|.++|+.+.
T Consensus       154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~  193 (232)
T cd03300         154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE  193 (232)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence                           3334443333225677999998764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.3e-19  Score=150.89  Aligned_cols=52  Identities=19%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.
T Consensus        45 ~l~i~nl~~~~~~~--~iL~~-is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~   96 (305)
T PRK14264         45 KLSVEDLDVYYGDD--HALKG-VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMND   96 (305)
T ss_pred             eEEEEEEEEEeCCe--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            48999999999764  79999 999999999999999999999999999999875

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=1.1e-19  Score=144.39  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      -++++|++..|...  ++|++ |||++++|++++++|+||+|||||++.|+|...+..+.
T Consensus         3 mL~v~~l~~~YG~~--~~L~g-vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~   59 (237)
T COG0410           3 MLEVENLSAGYGKI--QALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR   59 (237)
T ss_pred             ceeEEeEeecccce--eEEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence            47899999999876  89999 99999999999999999999999999999998776443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2e-19  Score=160.61  Aligned_cols=148  Identities=13%  Similarity=0.062  Sum_probs=92.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------RV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~~   94 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++..          ..
T Consensus         4 ~l~~~~l~~~~~~~--~il~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~   79 (501)
T PRK11288          4 YLSFDGIGKTFPGV--KALDD-ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS-ILIDGQEMRFASTTAALAA   79 (501)
T ss_pred             eEEEeeeEEEECCE--EEEee-eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCE-EEECCEECCCCCHHHHHhC
Confidence            47899999999754  79999 99999999999999999999999999999988665433 2222110          00


Q ss_pred             cccc-ccCCCCCC-----------------C-chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          95 HADI-IVPRGGEN-----------------C-VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        95 ~~~~-~~~~~~~~-----------------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                      .... ........                 . .......+.+.+.+.   .+.++...+..+.+|||||+||++||||++
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGq~qrv~laral~  156 (501)
T PRK11288         80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLE---HLGVDIDPDTPLKYLSIGQRQMVEIAKALA  156 (501)
T ss_pred             CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHH---HcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence            0000 00000000                 0 001111111211121   122322234456789999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.+.. +-+.++|.++||.+
T Consensus       157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiiiitHd~~  201 (501)
T PRK11288        157 RNARVIAFDEPTSSLSAREIEQLFRVIRELR-AEGRVILYVSHRME  201 (501)
T ss_pred             hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH
Confidence            5                     445555543 23678899999865

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.77  E-value=2.2e-19  Score=162.13  Aligned_cols=56  Identities=20%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      -++++||++.|++. +++|++ +||++++|++++|+||||||||||+++|+|.+.+..
T Consensus         6 ~l~i~~l~~~y~~~-~~il~~-vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~   61 (556)
T PRK11819          6 IYTMNRVSKVVPPK-KQILKD-ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE   61 (556)
T ss_pred             EEEEeeEEEEeCCC-CeeeeC-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            38899999999721 379999 999999999999999999999999999999887643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.77  E-value=1.3e-19  Score=156.25  Aligned_cols=149  Identities=12%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----h--------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----Y--------   92 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----~--------   92 (199)
                      +..-.++.++|+..  .++++ +||++++|++++|+|+||||||||+++|+|++.+..+.+. .++.    .        
T Consensus        24 g~~~~~~~~~~g~~--~~l~~-vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~-idG~~~~~~i~~~~~~~   99 (382)
T TIGR03415        24 GKTREEILDETGLV--VGVAN-ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL-VKDGDGSIDVANCDAAT   99 (382)
T ss_pred             CCCHHHHHHhhCCE--EEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE-ECCEecccccccCCHHH
Confidence            34445667777655  78999 9999999999999999999999999999998877654433 2221    0        


Q ss_pred             -----ccccccccCCCCCCC--chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEE
Q psy9640          93 -----RVHADIIVPRGGENC--VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSIL  151 (199)
Q Consensus        93 -----~~~~~~~~~~~~~~~--~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvaia  151 (199)
                           +....+.+......+  ...+.+              ...+.+.+   ..+.+....+..+.+|||||+|||+||
T Consensus       100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~l---e~vgL~~~~~~~~~~LSgGq~QRV~LA  176 (382)
T TIGR03415       100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQL---ELVGLAQWADKKPGELSGGMQQRVGLA  176 (382)
T ss_pred             HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHcCCchhhcCChhhCCHHHHHHHHHH
Confidence                 001111111111111  001111              11111111   122333334556779999999999999


Q ss_pred             eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         152 RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       152 RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||+..                     +.+.+.++....+.+.|+++||.+
T Consensus       177 RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~  226 (382)
T TIGR03415       177 RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD  226 (382)
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99976                     667777776666788899999765

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.77  E-value=2.8e-19  Score=151.88  Aligned_cols=149  Identities=15%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             Ccccccceeecccc---------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc
Q psy9640          25 GRDLEGVIKQYVNM---------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~---------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~   95 (199)
                      -++.++|...|+-.         ...++++ +||++++|+.+||+|+||||||||-+.|++++...  |.+..++.....
T Consensus       276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~-isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~  352 (534)
T COG4172         276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDG-ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDG  352 (534)
T ss_pred             eEEecceEEEEecCCccccccchheEEecc-ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccc
Confidence            48889999988522         1257899 99999999999999999999999999999988654  333332211100


Q ss_pred             c---c-cc--------c--CCCCCC-------------------CchHHHHHHHHHHHHhcCceeecCC-ceeeecceec
Q psy9640          96 A---D-II--------V--PRGGEN-------------------CVAIDLIVQHIHSQLQAGVSVDMPQ-GYTYEGKRCA  141 (199)
Q Consensus        96 ~---~-~~--------~--~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lS  141 (199)
                      .   . .+        +  +.+..+                   ....+...+.. +.+.   .+.++. ..+..|+++|
T Consensus       353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~-~aL~---EVGLDp~~r~RYPhEFS  428 (534)
T COG4172         353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVI-EALE---EVGLDPATRNRYPHEFS  428 (534)
T ss_pred             cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHH-HHHH---HcCCChhHhhcCCcccC
Confidence            0   0 00        0  011111                   11111111111 2222   133332 2344688999


Q ss_pred             CCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         142 VSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       142 gGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||||||+|||||+..                     ..++|.++..+-+++-+||.||=.
T Consensus       429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~  488 (534)
T COG4172         429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA  488 (534)
T ss_pred             cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence            999999999999964                     778889999999999999999854

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.6e-19  Score=146.41  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=47.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -++++|++++|++.  +++++ +||++++|++++|+|+||||||||+++|+|..
T Consensus         5 ~l~~~~l~~~~~~~--~~l~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14239          5 ILQVSDLSVYYNKK--KALNS-VSLDFYPNEITALIGPSGSGKSTLLRSINRMN   55 (252)
T ss_pred             eEEEEeeEEEECCe--eeeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999754  79999 99999999999999999999999999999975

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.76  E-value=2.6e-19  Score=147.99  Aligned_cols=56  Identities=16%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             cccccceeeccc-------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          26 RDLEGVIKQYVN-------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        26 i~l~nvs~~y~~-------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++++||++.|+.       ..++++++ +||++++|++++|+|+||||||||+++|+|.+.+..
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s   66 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNN-VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ   66 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            789999999973       12579999 999999999999999999999999999999876544

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.76  E-value=2e-19  Score=145.97  Aligned_cols=137  Identities=11%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh--------cccccccc-C-CCCCCCch
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY--------RVHADIIV-P-RGGENCVA  109 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~--------~~~~~~~~-~-~~~~~~~~  109 (199)
                      +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++..        ........ . ........
T Consensus        34 ~~il~~-vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t  111 (236)
T cd03267          34 VEALKG-ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE-VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP  111 (236)
T ss_pred             eeeeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence            369999 99999999999999999999999999999988765443 3222211        00011111 1 01110000


Q ss_pred             -HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------------
Q psy9640         110 -ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------------  156 (199)
Q Consensus       110 -~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------------  156 (199)
                       .+              ...+.+...+.   ...++...+.....|||||+||++||||++.                  
T Consensus       112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  188 (236)
T cd03267         112 VIDSFYLLAAIYDLPPARFKKRLDELSE---LLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA  188 (236)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence             01              11111111111   1223333355667899999999999999975                  


Q ss_pred             ---hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                         +.+.+.+....-+.+.|.++||.+.
T Consensus       189 ~~~l~~~l~~~~~~~~~tiiivsH~~~~  216 (236)
T cd03267         189 QENIRNFLKEYNRERGTTVLLTSHYMKD  216 (236)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence               4444444433335678999998763

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.4e-19  Score=161.12  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      |+++|++++|++.  ++|++ +||++++|++++|+||||||||||+++|+|.+.+..
T Consensus         2 l~i~~ls~~~~~~--~il~~-vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~   55 (530)
T PRK15064          2 LSTANITMQFGAK--PLFEN-ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA   55 (530)
T ss_pred             EEEEEEEEEeCCc--EeEeC-CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            6789999999754  79999 999999999999999999999999999999887654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.9e-19  Score=148.18  Aligned_cols=53  Identities=21%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|++.+
T Consensus        20 ~l~~~nl~~~~~~~--~~l~~-vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~   72 (274)
T PRK14265         20 VFEVEGVKVFYGGF--LALVD-VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDL   72 (274)
T ss_pred             eEEEeeEEEEeCCe--EEEee-eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccc
Confidence            59999999999764  79999 9999999999999999999999999999998753

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.76  E-value=2.2e-19  Score=153.99  Aligned_cols=142  Identities=12%  Similarity=0.007  Sum_probs=87.6

Q ss_pred             cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------------ccc
Q psy9640          30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------------VHA   96 (199)
Q Consensus        30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------------~~~   96 (199)
                      |++++|++.  . + + +||++++|++++|+||||||||||+++|+|++.+..+. +..++...             ...
T Consensus         4 ~l~~~~~~~--~-~-~-isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~-I~~~g~~i~~~~~~~~~~~~~~~i   77 (354)
T TIGR02142         4 RFSKRLGDF--S-L-D-ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE-IVLNGRTLFDSRKGIFLPPEKRRI   77 (354)
T ss_pred             EEEEEECCE--E-E-E-EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECccCccccccchhhCCe
Confidence            789999654  3 4 8 99999999999999999999999999999988765443 33322110             000


Q ss_pred             ccccCC-CCC-CCchHHHH------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          97 DIIVPR-GGE-NCVAIDLI------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        97 ~~~~~~-~~~-~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      ...... ... +....+.+            ...+.+.+.   ...+....+..+.+|||||+|||+||||++.      
T Consensus        78 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll  154 (354)
T TIGR02142        78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIE---LLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL  154 (354)
T ss_pred             EEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            111111 000 00000111            001111111   1233333345677999999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                     +.+.+.+...+-+.++|.++||.+
T Consensus       155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~  193 (354)
T TIGR02142       155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ  193 (354)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence                           455555555544678899999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=3.2e-19  Score=145.90  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -++++|+++.|++.  +++++ +||++.+|++++|+|+||||||||+++|+|...+
T Consensus         4 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   56 (251)
T PRK14270          4 KMESKNLNLWYGEK--QALND-INLPIYENKITALIGPSGCGKSTFLRCLNRMNDL   56 (251)
T ss_pred             EEEEEEeEEEECCe--eeeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence            37899999999754  79999 9999999999999999999999999999998764

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.4e-19  Score=147.55  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++++|++++|++.  .+|++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus         7 ~l~~~nl~~~~~~~--~il~~-is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (261)
T PRK14258          7 AIKVNNLSFYYDTQ--KILEG-VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL   59 (261)
T ss_pred             eEEEeeEEEEeCCe--eEeec-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence            48999999999754  69999 9999999999999999999999999999999875

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.76  E-value=1.9e-19  Score=147.20  Aligned_cols=50  Identities=16%  Similarity=0.160  Sum_probs=46.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -++++|+++.|++.  ++|++ +||++++|++++|+|+||||||||+++|+|.
T Consensus         7 ~l~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131          7 ILEIKNLHASVNEN--EILKG-LNLSINKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eEEEEeEEEEeCCE--Eeeec-ceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            38899999999754  79999 9999999999999999999999999999997

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=1.5e-19  Score=165.52  Aligned_cols=148  Identities=14%  Similarity=0.107  Sum_probs=88.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCC-C
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR-G  103 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~-~  103 (199)
                      -++++||++.|++.  .+|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.+...+....  ..+.... .
T Consensus       312 ~l~~~~l~~~y~~~--~il~~-isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i--gy~~Q~~~~  386 (638)
T PRK10636        312 LLKMEKVSAGYGDR--IILDS-IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL--GYFAQHQLE  386 (638)
T ss_pred             eEEEEeeEEEeCCe--eeecc-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE--EEecCcchh
Confidence            38999999999754  79999 99999999999999999999999999999988665433221111000  0000000 0


Q ss_pred             C--CCCchHHH--------HHHHHHHHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch----------------
Q psy9640         104 G--ENCVAIDL--------IVQHIHSQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET----------------  156 (199)
Q Consensus       104 ~--~~~~~~~~--------~~~~l~~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~----------------  156 (199)
                      .  .+....+.        ....+...+.   ...++. ..+..+..|||||+|||+||||++.                
T Consensus       387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~---~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~  463 (638)
T PRK10636        387 FLRADESPLQHLARLAPQELEQKLRDYLG---GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDL  463 (638)
T ss_pred             hCCccchHHHHHHHhCchhhHHHHHHHHH---HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence            0  00000000        0111111111   112221 2234567899999999999999975                


Q ss_pred             -hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                       ....+.+.+-...-++|+|+||..
T Consensus       464 ~~~~~l~~~L~~~~gtvi~vSHd~~  488 (638)
T PRK10636        464 DMRQALTEALIDFEGALVVVSHDRH  488 (638)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCCHH
Confidence             222233332222347899999865

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.76  E-value=2.4e-19  Score=139.61  Aligned_cols=110  Identities=19%  Similarity=0.156  Sum_probs=79.0

Q ss_pred             ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCCCc
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV  108 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~  108 (199)
                      .|++++|.+.  .++++ . +++++|++++|+||||||||||+++|+|.+.+..+. +..++...   .           
T Consensus         4 ~~l~~~~~~~--~~l~~-~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i---~-----------   64 (177)
T cd03222           4 PDCVKRYGVF--FLLVE-L-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEWDGITP---V-----------   64 (177)
T ss_pred             CCeEEEECCE--EEEcc-C-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE-EEECCEEE---E-----------
Confidence            6899999765  67888 5 899999999999999999999999999988765543 33332100   0           


Q ss_pred             hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhccc
Q psy9640         109 AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKD  167 (199)
Q Consensus       109 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~  167 (199)
                                         -.+..     ..|||||+||++||||+..                     +.+.+.+...+
T Consensus        65 -------------------~~~q~-----~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~  120 (177)
T cd03222          65 -------------------YKPQY-----IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE  120 (177)
T ss_pred             -------------------EEccc-----CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc
Confidence                               00000     0189999999999999975                     44455555443


Q ss_pred             cceeEEEEEeCCCC
Q psy9640         168 IRIGKILIQTNKAT  181 (199)
Q Consensus       168 ~~~~~~~~~~~~~~  181 (199)
                      -+.+.|.++||.+.
T Consensus       121 ~~~tiiivsH~~~~  134 (177)
T cd03222         121 GKKTALVVEHDLAV  134 (177)
T ss_pred             CCCEEEEEECCHHH
Confidence            23678999998763

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.76  E-value=2e-19  Score=164.66  Aligned_cols=148  Identities=13%  Similarity=0.054  Sum_probs=90.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCC-C
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR-G  103 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~-~  103 (199)
                      -++++||++.|++.  ++|++ +||++.+|++++|+||||||||||+++|+|.+.|..+.+.. +... ....+.... .
T Consensus       319 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~~~  393 (635)
T PRK11147        319 VFEMENVNYQIDGK--QLVKD-FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHRAE  393 (635)
T ss_pred             eEEEeeeEEEECCe--EEEcC-cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCcccc
Confidence            38999999999764  79999 99999999999999999999999999999988665443322 2100 000000000 0


Q ss_pred             CC-CCchHHHH------------HHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch-------------
Q psy9640         104 GE-NCVAIDLI------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus       104 ~~-~~~~~~~~------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      .. +....+.+            ...+...+..   ..+. ...+.....|||||+||++||||++.             
T Consensus       394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~  470 (635)
T PRK11147        394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD---FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND  470 (635)
T ss_pred             cCCCCCHHHHHHhhcccccccchHHHHHHHHHh---cCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence            00 00000100            0111111111   1121 12234567899999999999999975             


Q ss_pred             ----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                          ..+.+.+.+.+...++|+|+||..
T Consensus       471 LD~~~~~~l~~~l~~~~~tvi~vSHd~~  498 (635)
T PRK11147        471 LDVETLELLEELLDSYQGTVLLVSHDRQ  498 (635)
T ss_pred             CCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence                333444444444557899999865

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.76  E-value=2.9e-19  Score=140.31  Aligned_cols=135  Identities=10%  Similarity=0.020  Sum_probs=81.3

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------cccccccCCC---CC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------VHADIIVPRG---GE  105 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------~~~~~~~~~~---~~  105 (199)
                      +.+|++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+ ..++...           ..........   ..
T Consensus         5 ~~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   82 (190)
T TIGR01166         5 PEVLKG-LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV-LIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF   82 (190)
T ss_pred             cceecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EECCEEccccccchHHHHhhEEEEecChhhccc
Confidence            368999 999999999999999999999999999999887654433 2222110           0001111110   01


Q ss_pred             CCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------
Q psy9640         106 NCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------  156 (199)
Q Consensus       106 ~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------  156 (199)
                      .....+.              ..+.+...+.   .+.++...+..+.+|||||+||++||||+..               
T Consensus        83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  159 (190)
T TIGR01166        83 AADVDQDVAFGPLNLGLSEAEVERRVREALT---AVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD  159 (190)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            0000011              1111111111   1223333344677899999999999999975               


Q ss_pred             ------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                            +.+.+.+.... +.+.|.++||.+
T Consensus       160 ~~~~~~~~~~l~~~~~~-~~tili~sH~~~  188 (190)
T TIGR01166       160 PAGREQMLAILRRLRAE-GMTVVISTHDVD  188 (190)
T ss_pred             HHHHHHHHHHHHHHHHc-CCEEEEEeeccc
Confidence                  44444444322 678899999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=2.1e-19  Score=145.35  Aligned_cols=147  Identities=13%  Similarity=0.143  Sum_probs=88.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      ++++||+++|++.  .  .+ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...       .....
T Consensus         2 l~~~~l~~~~~~~--~--~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~-i~~~g~~~~~~~~~~~~i~~   75 (232)
T PRK10771          2 LKLTDITWLYHHL--P--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGS-LTLNGQDHTTTPPSRRPVSM   75 (232)
T ss_pred             eEEEEEEEEECCc--c--ce-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCeecCcCChhhccEEE
Confidence            5789999999743  2  38 99999999999999999999999999999988665433 22222110       00000


Q ss_pred             ccCC-CCCCCch-HHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IVPR-GGENCVA-IDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~~~-~~~~~~~-~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .... ....... .+.              ..+.+.+.+.   .+.++...+..+.+|||||+||++||||+..      
T Consensus        76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  152 (232)
T PRK10771         76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR---QMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL  152 (232)
T ss_pred             EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHH---HcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            0000 0000000 000              0111111111   1222222344567899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+....-+.++|.++||.+.
T Consensus       153 LDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~  192 (232)
T PRK10771        153 LDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED  192 (232)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence                           3444444444335678999998763

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.76  E-value=3.9e-19  Score=140.26  Aligned_cols=148  Identities=7%  Similarity=-0.029  Sum_probs=89.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-----ccc-c
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-----ADI-I   99 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-----~~~-~   99 (199)
                      ++++|++++|++   ..+.+ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++.....     ... .
T Consensus         2 l~~~~l~~~~~~---~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~   76 (195)
T PRK13541          2 LSLHQLQFNIEQ---KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIG   76 (195)
T ss_pred             eEEEEeeEEECC---cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCcccChhhhhhEEecc
Confidence            678999999964   34568 99999999999999999999999999999988766543 3333321100     000 0


Q ss_pred             cCCCCCCCch-HHHHH---------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640         100 VPRGGENCVA-IDLIV---------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus       100 ~~~~~~~~~~-~~~~~---------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      .......... .+.+.         +.+...+.   ...+....+..+.+|||||+||++||||++.             
T Consensus        77 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~  153 (195)
T PRK13541         77 HNLGLKLEMTVFENLKFWSEIYNSAETLYAAIH---YFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETN  153 (195)
T ss_pred             CCcCCCccCCHHHHHHHHHHhcccHHHHHHHHH---HcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            0000000000 11110         00101111   1122222344677899999999999999975             


Q ss_pred             --------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 --------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 --------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                              +.+.+.+. ..-+.+.|.++|+....
T Consensus       154 LD~~~~~~l~~~l~~~-~~~~~tiii~sh~~~~i  186 (195)
T PRK13541        154 LSKENRDLLNNLIVMK-ANSGGIVLLSSHLESSI  186 (195)
T ss_pred             CCHHHHHHHHHHHHHH-HhCCCEEEEEeCCcccc
Confidence                    33333322 23357889999987754

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.76  E-value=2.4e-19  Score=145.61  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|++++|++.  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 i~i~~l~~~~~~~--~il~~-is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (237)
T TIGR00968         1 IEIANISKRFGSF--QALDD-VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG   55 (237)
T ss_pred             CEEEEEEEEECCe--eeeee-EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4689999999764  79999 9999999999999999999999999999998866544

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.1e-19  Score=144.01  Aligned_cols=156  Identities=13%  Similarity=0.043  Sum_probs=98.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc-------c-h-hccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD-------S-F-YRVH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d-------~-~-~~~~   95 (199)
                      -|+++||+.+|.+.  ++|++ +|-+|++|+..+|+||||||||||++++++...+....+....       . + .+..
T Consensus        31 li~l~~v~v~r~gk--~iL~~-isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~  107 (257)
T COG1119          31 LIELKNVSVRRNGK--KILGD-LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR  107 (257)
T ss_pred             eEEecceEEEECCE--eeccc-cceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence            49999999999877  89999 9999999999999999999999999999998876422111110       0 0 0000


Q ss_pred             ccc-------ccCC----------C------CCC-CchH---HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeee
Q psy9640          96 ADI-------IVPR----------G------GEN-CVAI---DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGV  148 (199)
Q Consensus        96 ~~~-------~~~~----------~------~~~-~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrv  148 (199)
                      .+.       .+..          +      .+. ..+.   +.....+ +.+......+.|.      ..||-||+|||
T Consensus       108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~ll-e~~g~~~la~r~~------~~LS~Ge~rrv  180 (257)
T COG1119         108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLL-ELLGAKHLADRPF------GSLSQGEQRRV  180 (257)
T ss_pred             hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHH-HHcchhhhccCch------hhcCHhHHHHH
Confidence            000       0000          0      011 1111   1111112 2222222223333      27999999999


Q ss_pred             eEEeccch-----------------hHHHHHhhccccce-----eEEEEEeCCCCCCchhhhhc
Q psy9640         149 SILRAGET-----------------MEQAVHDVCKDIRI-----GKILIQTNKATDEPELYYLR  190 (199)
Q Consensus       149 aiaRA~~~-----------------~~~~l~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~~  190 (199)
                      -||||+..                 -.+.|++.++++-.     +.|+|+|..+...|...|+-
T Consensus       181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l  244 (257)
T COG1119         181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL  244 (257)
T ss_pred             HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence            99999976                 23345555554444     48999999988877766654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.76  E-value=5.5e-19  Score=138.02  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      ++++|++++|      ++++ ++|++++|++++|+|+||||||||+++|+|.+.+..+.
T Consensus         5 l~~~~l~~~~------~l~~-vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   56 (182)
T cd03215           5 LEVRGLSVKG------AVRD-VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE   56 (182)
T ss_pred             EEEeccEEEe------eecc-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            7899999988      7899 99999999999999999999999999999998765443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.7e-19  Score=148.11  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++++|+++.|++.  +++++ +||++++|++++|+|+||||||||+++|+|.+.+
T Consensus        25 ~l~~~nl~~~~~~~--~il~~-vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~   77 (272)
T PRK14236         25 ALEVRNLNLFYGDK--QALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL   77 (272)
T ss_pred             EEEEEEEEEEECCe--eEeee-EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            48999999999754  79999 9999999999999999999999999999998764

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=5e-19  Score=144.66  Aligned_cols=51  Identities=24%  Similarity=0.189  Sum_probs=46.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -++++|+++.|+..  +++++ +||++++|++++|+|+||||||||+++|+|+.
T Consensus         3 ~l~~~~~~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14245          3 KIDARDVNFWYGDF--HALKG-ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMN   53 (250)
T ss_pred             EEEEEEEEEEECCE--eEEee-eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhh
Confidence            47899999999754  79999 99999999999999999999999999999873

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.76  E-value=3.7e-19  Score=158.46  Aligned_cols=145  Identities=10%  Similarity=0.089  Sum_probs=90.0

Q ss_pred             cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cccc
Q psy9640          28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VHAD   97 (199)
Q Consensus        28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~~~   97 (199)
                      ++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|++.+..+. +..++...          ....
T Consensus         1 ~~nl~~~~~~~--~il~~-vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~   76 (491)
T PRK10982          1 MSNISKSFPGV--KALDN-VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS-ILFQGKEIDFKSSKEALENGIS   76 (491)
T ss_pred             CCceEEEeCCE--Eeeee-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCEECCCCCHHHHHhCCEE
Confidence            57999999754  79999 99999999999999999999999999999988765433 32222100          0000


Q ss_pred             c-ccCCCCC-C---------------C--chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          98 I-IVPRGGE-N---------------C--VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        98 ~-~~~~~~~-~---------------~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      . ....... .               .  .......+.+.+.+.   ...+....+..+.+|||||+|||+||||+..  
T Consensus        77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p  153 (491)
T PRK10982         77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD---ELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA  153 (491)
T ss_pred             EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHH---HcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence            0 0000000 0               0  001111112212221   1223333344577899999999999999975  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.++. .-+.++|.++||.+
T Consensus       154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tvii~tH~~~  195 (491)
T PRK10982        154 KIVIMDEPTSSLTEKEVNHLFTIIRKLK-ERGCGIVYISHKME  195 (491)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH
Confidence                               444455543 23678899999865

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=3.2e-19  Score=159.39  Aligned_cols=152  Identities=10%  Similarity=0.065  Sum_probs=93.9

Q ss_pred             Ccccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          25 GRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      -++++|+++.|+. ...+++++ +||++++|++++|+|+||||||||+++|+|.+.++..|.+..++...          
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDD-VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             eEEEecCccccccccccccccc-eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            3899999999953 12469999 99999999999999999999999999999998743334443332100          


Q ss_pred             ccccc-ccCC---CCCCCch-HH-------------------HHHHHHHHHHhcCceeecC-CceeeecceecCCeeeee
Q psy9640          94 VHADI-IVPR---GGENCVA-ID-------------------LIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGV  148 (199)
Q Consensus        94 ~~~~~-~~~~---~~~~~~~-~~-------------------~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrv  148 (199)
                      ..... ....   ......+ .+                   ...+.+.+.+.   ...+. ...+..+.+|||||+|||
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgG~kqrv  414 (506)
T PRK13549        338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQ---RLKVKTASPELAIARLSGGNQQKA  414 (506)
T ss_pred             CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHH---hcCccCCCcccccccCCHHHHHHH
Confidence            00001 0010   0000000 00                   00111111111   12232 223445779999999999


Q ss_pred             eEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         149 SILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       149 aiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +||||++.                     +.+.+.+.... +.++|.++||...
T Consensus       415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~  467 (506)
T PRK13549        415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPE  467 (506)
T ss_pred             HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHH
Confidence            99999975                     45555554433 6788999998653

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.76  E-value=9.5e-20  Score=162.18  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=47.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|+++.|++.  .+|++ +||++++|++++|+||||||||||+++|+|...
T Consensus       260 ~l~~~~l~~~~~~~--~il~~-vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~  311 (490)
T PRK10938        260 RIVLNNGVVSYNDR--PILHN-LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP  311 (490)
T ss_pred             eEEEeceEEEECCe--eEEee-ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            48999999999754  69999 999999999999999999999999999999654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=3.6e-19  Score=145.74  Aligned_cols=52  Identities=19%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|+++.|++.  .+|++ +||++.+|++++|+|+||||||||+++|+|...
T Consensus         6 ~i~~~~l~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14261          6 ILSTKNLNLWYGEK--HALYD-ITISIPKNRVTALIGPSGCGKSTLLRCFNRMND   57 (253)
T ss_pred             eEEEeeeEEEECCe--eeeee-eEEEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence            47899999999754  79999 999999999999999999999999999999865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.76  E-value=3.3e-19  Score=160.17  Aligned_cols=151  Identities=12%  Similarity=0.094  Sum_probs=93.6

Q ss_pred             Ccccccceeeccc---------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--
Q psy9640          25 GRDLEGVIKQYVN---------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~---------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--   93 (199)
                      -++++|+++.|+.         ..+.+|++ +||++++|++++|+||||||||||+++|+|++ +. .|.+..++...  
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~-isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~-~G~i~~~g~~i~~  351 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKN-ISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NS-QGEIWFDGQPLHN  351 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeec-ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CC-CcEEEECCEEccc
Confidence            3899999999952         12479999 99999999999999999999999999999987 33 34444333110  


Q ss_pred             ----------ccccc-ccCC--CCCCC-chHHHHH----------------HHHHHHHhcCceeecCC-ceeeecceecC
Q psy9640          94 ----------VHADI-IVPR--GGENC-VAIDLIV----------------QHIHSQLQAGVSVDMPQ-GYTYEGKRCAV  142 (199)
Q Consensus        94 ----------~~~~~-~~~~--~~~~~-~~~~~~~----------------~~l~~~~~~~~~~~~~~-~~~~~g~~lSg  142 (199)
                                ..... ....  ..... ...+.+.                +.+.+.+.   ...++. ..+..+.+|||
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSg  428 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME---EVGLDPETRHRYPAEFSG  428 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHH---HcCCCHHHHhcCCccCCH
Confidence                      00011 1111  00000 0111110                11111111   122321 22445679999


Q ss_pred             CeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         143 SKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       143 Gq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ||+|||+||||++.                     +.+.+.+....-+.++|.++||.+.
T Consensus       429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~  488 (529)
T PRK15134        429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV  488 (529)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence            99999999999975                     5555555544336788999998663

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.76  E-value=5.3e-19  Score=136.44  Aligned_cols=151  Identities=17%  Similarity=0.171  Sum_probs=100.0

Q ss_pred             cCcccccceeecccc-------ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch-----
Q psy9640          24 RGRDLEGVIKQYVNM-------VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF-----   91 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~-------~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~-----   91 (199)
                      .-++++|++++|..+       ...+++. |||+.++|+.++|+|.||||||||+++|+|...|..+.++..|..     
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~-vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D   81 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKP-VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD   81 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccc-eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence            357889999987422       2468889 999999999999999999999999999999998776554433211     


Q ss_pred             --hc-ccccccc--CCCCCC-----------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeee
Q psy9640          92 --YR-VHADIIV--PRGGEN-----------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVS  149 (199)
Q Consensus        92 --~~-~~~~~~~--~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrva  149 (199)
                        ++ ....+.+  ++...|                 ..+.+.-.+.+.+.+.  ..--+|..-+..+..||.||+||||
T Consensus        82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~--~VGL~Pdhan~~~~~la~~QKQRVa  159 (267)
T COG4167          82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLR--MVGLLPDHANYYPHMLAPGQKQRVA  159 (267)
T ss_pred             hHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHH--HhccCccccccchhhcCchhHHHHH
Confidence              11 0111111  111111                 1122222222222221  1123455556678899999999999


Q ss_pred             EEeccch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640         150 ILRAGET---------------------MEQAVHDVCKDIRIGKILIQT  177 (199)
Q Consensus       150 iaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~  177 (199)
                      +|||+..                     +..+.+.+..+.+|+.|.|+.
T Consensus       160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Q  208 (267)
T COG4167         160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ  208 (267)
T ss_pred             HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEec
Confidence            9999964                     556677888899999998883

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.75  E-value=3.9e-19  Score=144.19  Aligned_cols=148  Identities=9%  Similarity=0.067  Sum_probs=91.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~   98 (199)
                      |+++|+++.|++   +++++ ++|++.+|++++|+|+||||||||+++|+|.+.+..+. +..++....       ....
T Consensus         1 l~~~~l~~~~~~---~~l~~-is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~-v~i~g~~~~~~~~~~~~i~~   75 (235)
T cd03299           1 LKVENLSKDWKE---FKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK-ILLNGKDITNLPPEKRDISY   75 (235)
T ss_pred             CeeEeEEEEeCC---ceeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE-EEECCEEcCcCChhHcCEEE
Confidence            468999999964   37999 99999999999999999999999999999987765443 333321110       0011


Q ss_pred             ccCC-CCCCCch-HHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IVPR-GGENCVA-IDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~~~-~~~~~~~-~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .... ....... .+.              ..+.+.+.+.   .+.++...+..+..|||||+||++||||+..      
T Consensus        76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  152 (235)
T cd03299          76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAE---MLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL  152 (235)
T ss_pred             EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            1111 1110000 010              1111111111   1223333344667899999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+.....+.+.|.++|+...
T Consensus       153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~  192 (235)
T cd03299         153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE  192 (235)
T ss_pred             ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                           4444555444335677999997653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=3.7e-19  Score=162.93  Aligned_cols=56  Identities=9%  Similarity=0.089  Sum_probs=50.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      |+++||+++|++.  .+|++ +||++.+|+++||+|+||||||||+++|+|.+.|..+.
T Consensus         2 i~i~nls~~~g~~--~~l~~-vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~   57 (638)
T PRK10636          2 IVFSSLQIRRGVR--VLLDN-ATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS   57 (638)
T ss_pred             EEEEEEEEEeCCc--eeecC-cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            6789999999765  79999 99999999999999999999999999999987765443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.4e-19  Score=138.97  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      |+.+|++++-.+.  ..+++ +||++.+||+++|+||||||||||++.|.|.+.|..
T Consensus         2 i~a~nls~~~~Gr--~ll~~-vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~   55 (259)
T COG4559           2 IRAENLSYSLAGR--RLLDG-VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS   55 (259)
T ss_pred             eeeeeeEEEeecc--eeccC-cceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC
Confidence            6788999988766  79999 999999999999999999999999999999998654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=6e-19  Score=144.31  Aligned_cols=51  Identities=16%  Similarity=0.110  Sum_probs=46.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -+++|+++.|++.  +++++ ++|++.+|++++|+|+||||||||+++|+|...
T Consensus         6 ~~~~~l~~~~~~~--~~l~~-is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244          6 ASVKNLNLWYGSK--QILFD-INLDIYKREVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             EEeeeEEEEECCe--eeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3578999999753  79999 999999999999999999999999999999875

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.75  E-value=7.6e-19  Score=158.55  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=49.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++++|++++|++. +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..
T Consensus         5 i~~~nls~~~~~~-~~il~~-is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~   59 (552)
T TIGR03719         5 YTMNRVSKVVPPK-KEILKD-ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN   59 (552)
T ss_pred             EEEeeEEEecCCC-CeeecC-ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            7899999999722 379999 999999999999999999999999999999886654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=6.9e-19  Score=143.79  Aligned_cols=51  Identities=14%  Similarity=0.205  Sum_probs=47.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++++||++.|++.  +++++ +||++.+|++++|+|+||||||||+++|+|...
T Consensus         4 l~~~~v~~~~~~~--~~l~~-~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (250)
T PRK14266          4 IEVENLNTYFDDA--HILKN-VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND   54 (250)
T ss_pred             EEEEeEEEEeCCe--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            6789999999754  79999 999999999999999999999999999999864

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=8.1e-19  Score=133.03  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=49.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL   86 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i   86 (199)
                      .|+++|+++.|..+  ++|-| |+++-+.|+.+.+.||||+|||||+|.| +++..+..|.+
T Consensus         2 sirv~~in~~yg~~--q~lfd-i~l~~~~getlvllgpsgagkssllr~l-nlle~p~sg~l   59 (242)
T COG4161           2 SIQLNGINCFYGAH--QALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTL   59 (242)
T ss_pred             ceEEcccccccccc--hheee-eeecCCCCCEEEEECCCCCchHHHHHHH-HHHhCCCCCeE
Confidence            47899999999887  79999 9999999999999999999999999887 55555544444

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.74  E-value=7.9e-19  Score=160.79  Aligned_cols=56  Identities=11%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      |+++|++++|++.  ++|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.
T Consensus         4 l~i~~ls~~~~~~--~il~~-is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~   59 (635)
T PRK11147          4 ISIHGAWLSFSDA--PLLDN-AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR   59 (635)
T ss_pred             EEEeeEEEEeCCc--eeEeC-cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence            7899999999764  79999 99999999999999999999999999999988765543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.74  E-value=7.5e-19  Score=145.04  Aligned_cols=136  Identities=13%  Similarity=0.003  Sum_probs=79.5

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch--hccccccccCC-CC---------CCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF--YRVHADIIVPR-GG---------ENC  107 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~--~~~~~~~~~~~-~~---------~~~  107 (199)
                      ++++++ +||++++|++++|+|+||||||||+++|+|.+.+..+.+. .++.  +.......... ..         ...
T Consensus        37 ~~il~~-is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~  114 (264)
T PRK13546         37 FFALDD-ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD-RNGEVSVIAISAGLSGQLTGIENIEFKMLCMG  114 (264)
T ss_pred             eEEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence            468999 9999999999999999999999999999998876654332 2221  00000000000 00         000


Q ss_pred             chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhcc
Q psy9640         108 VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCK  166 (199)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p  166 (199)
                      ...+.....+...+.   ...+....+..+.+|||||+||++||||++.                     +.+.+.+.. 
T Consensus       115 ~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-  190 (264)
T PRK13546        115 FKRKEIKAMTPKIIE---FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-  190 (264)
T ss_pred             CCHHHHHHHHHHHHH---HcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-
Confidence            111111111111111   1122222344567899999999999999975                     223333332 


Q ss_pred             ccceeEEEEEeCCCC
Q psy9640         167 DIRIGKILIQTNKAT  181 (199)
Q Consensus       167 ~~~~~~~~~~~~~~~  181 (199)
                      ..+.+.|.++|+.+.
T Consensus       191 ~~g~tiIiisH~~~~  205 (264)
T PRK13546        191 EQNKTIFFVSHNLGQ  205 (264)
T ss_pred             HCCCEEEEEcCCHHH
Confidence            235678999998653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.74  E-value=6.3e-19  Score=144.09  Aligned_cols=141  Identities=13%  Similarity=0.067  Sum_probs=80.8

Q ss_pred             eeccccccccccccccCCC-----CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-CCC
Q psy9640          33 KQYVNMVKPAFSTFIAPSM-----VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-GEN  106 (199)
Q Consensus        33 ~~y~~~~~~~l~~~vsl~i-----~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-~~~  106 (199)
                      |+|++.. ..+.+ +++++     ++|++++|+|+||||||||+++|+|.+.+..+. +..++...  ........ ..+
T Consensus         1 ~~y~~~~-~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~-i~~~g~~i--~~~~q~~~~~~~   75 (246)
T cd03237           1 YTYPTMK-KTLGE-FTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-IEIELDTV--SYKPQYIKADYE   75 (246)
T ss_pred             CCCcccc-cccCc-EEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe-EEECCceE--EEecccccCCCC
Confidence            3555432 35566 55555     589999999999999999999999988765433 32322100  00000000 000


Q ss_pred             CchHHHHHHH----------HHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------------------
Q psy9640         107 CVAIDLIVQH----------IHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------------------  156 (199)
Q Consensus       107 ~~~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------------------  156 (199)
                      ....+.+...          ..+.+   ..+.++...+..+.+|||||+||++||||++.                    
T Consensus        76 ~tv~e~l~~~~~~~~~~~~~~~~~l---~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~  152 (246)
T cd03237          76 GTVRDLLSSITKDFYTHPYFKTEIA---KPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL  152 (246)
T ss_pred             CCHHHHHHHHhhhccccHHHHHHHH---HHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            0001111000          00111   11223333344677899999999999999975                    


Q ss_pred             -hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                       +.+.+.+.....+.++|.++||.+.
T Consensus       153 ~l~~~l~~~~~~~~~tiiivsHd~~~  178 (246)
T cd03237         153 MASKVIRRFAENNEKTAFVVEHDIIM  178 (246)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence             4455555554446788999998663

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.74  E-value=6.4e-19  Score=146.72  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..|+++|+++.  .  +++|++ +||++++|++++|+|+||||||||+++|+|.+.+..
T Consensus        38 ~~l~i~nls~~--~--~~vL~~-vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~   91 (282)
T cd03291          38 NNLFFSNLCLV--G--APVLKN-INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE   91 (282)
T ss_pred             CeEEEEEEEEe--c--ccceee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            45999999985  2  379999 999999999999999999999999999999886653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.2e-18  Score=131.56  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=95.7

Q ss_pred             Ccccccceeeccc-----cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc-chhcccc--
Q psy9640          25 GRDLEGVIKQYVN-----MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD-SFYRVHA--   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~-----~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d-~~~~~~~--   96 (199)
                      .+.++|++++|.-     ..-+++++ +||+++.||-+++-|||||||||++|+|-+-+.++.+.++... +......  
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~-vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a   82 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRN-VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA   82 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeec-eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence            4778999998832     23479999 9999999999999999999999999999998887765443221 1000000  


Q ss_pred             -------------c--cccCCCCCCCc--------------hHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeee
Q psy9640          97 -------------D--IIVPRGGENCV--------------AIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKIC  146 (199)
Q Consensus        97 -------------~--~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~Q  146 (199)
                                   +  .++.|......              ..+.........+   ..+.+|.. +..-|.++|||++|
T Consensus        83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll---~rLnlperLW~LaPaTFSGGEqQ  159 (235)
T COG4778          83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLL---TRLNLPERLWSLAPATFSGGEQQ  159 (235)
T ss_pred             ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHH---HHcCCCHHHhcCCCcccCCchhe
Confidence                         0  00011101001              1111111111111   13445543 34467799999999


Q ss_pred             eeeEEeccch--------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         147 GVSILRAGET--------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       147 rvaiaRA~~~--------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ||.|||++..                    ..-.+.+--+..+...|+|.||++-
T Consensus       160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeev  214 (235)
T COG4778         160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEV  214 (235)
T ss_pred             ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHH
Confidence            9999999865                    2222333334568888999999874

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=8.7e-19  Score=159.00  Aligned_cols=145  Identities=13%  Similarity=0.090  Sum_probs=90.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC-
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG-  103 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~-  103 (199)
                      -++++|+++.|.+.   .|++ +++++.+|++++|+|+||||||||+++|+|.+.+..+.+. .+ .  .......... 
T Consensus       340 ~l~~~~ls~~~~~~---~l~~-~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~-~~-~--~i~y~~Q~~~~  411 (590)
T PRK13409        340 LVEYPDLTKKLGDF---SLEV-EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD-PE-L--KISYKPQYIKP  411 (590)
T ss_pred             EEEEcceEEEECCE---EEEe-cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-Ee-e--eEEEecccccC
Confidence            38999999999653   4889 9999999999999999999999999999999876544332 11 0  0000000000 


Q ss_pred             CCCCchHHHHHH---------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------------
Q psy9640         104 GENCVAIDLIVQ---------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------------  156 (199)
Q Consensus       104 ~~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------------  156 (199)
                      ..+....+.+..         ...+.+.   ...+....+..+.+|||||+|||+||||+..                  
T Consensus       412 ~~~~tv~e~l~~~~~~~~~~~~~~~~L~---~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~  488 (590)
T PRK13409        412 DYDGTVEDLLRSITDDLGSSYYKSEIIK---PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ  488 (590)
T ss_pred             CCCCcHHHHHHHHhhhcChHHHHHHHHH---HCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            000000011100         0101111   1122222344677899999999999999975                  


Q ss_pred             ---hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                         +.+.+.+.....+.++|+++||.+
T Consensus       489 ~~~l~~~l~~l~~~~g~tviivsHD~~  515 (590)
T PRK13409        489 RLAVAKAIRRIAEEREATALVVDHDIY  515 (590)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence               445555544444678899999866

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.74  E-value=1.1e-18  Score=154.76  Aligned_cols=150  Identities=12%  Similarity=0.010  Sum_probs=91.0

Q ss_pred             Ccccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--ccc-cccc
Q psy9640          25 GRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--VHA-DIIV  100 (199)
Q Consensus        25 ~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--~~~-~~~~  100 (199)
                      -++++|+++.|++. .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...  ... ....
T Consensus        21 mL~lknL~~~~~~~~~~~IL~n-VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe-I~I~G~~~~i~~~~~l~~   98 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNN-ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-VDIKGSAALIAISSGLNG   98 (549)
T ss_pred             eeEEEEEEEecCCCccceEEee-eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE-EEECCEeeeEEeccccCC
Confidence            47889999988653 2469999 99999999999999999999999999999988765443 33332110  000 0000


Q ss_pred             CCC-C--------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------
Q psy9640         101 PRG-G--------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------  156 (199)
Q Consensus       101 ~~~-~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------  156 (199)
                      ... .        ......+...+.+...+.   ...+....+..+..|||||+||++||||++.               
T Consensus        99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe---~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD  175 (549)
T PRK13545         99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIE---FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD  175 (549)
T ss_pred             CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHH---HcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence            000 0        000011111111111111   1122222344567899999999999999976               


Q ss_pred             ------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                            +.+.+.+.. ..+.++|+++||.+
T Consensus       176 ~~sr~~LlelL~el~-~~G~TIIIVSHdl~  204 (549)
T PRK13545        176 QTFTKKCLDKMNEFK-EQGKTIFFISHSLS  204 (549)
T ss_pred             HHHHHHHHHHHHHHH-hCCCEEEEEECCHH
Confidence                  333443332 22567899999865

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.1e-18  Score=143.42  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             cccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          22 LARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        22 ~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ...-+.++|++++|++.  +++++ +||++.+|++++|+|+||||||||+++|+|.+.+..
T Consensus         7 ~~~~i~~~~~~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~   64 (257)
T PRK14246          7 AEDVFNISRLYLYINDK--AILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD   64 (257)
T ss_pred             hhhheeeeeEEEecCCc--eeEec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            44568999999999765  79999 999999999999999999999999999999887654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.74  E-value=7.9e-19  Score=158.57  Aligned_cols=56  Identities=18%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|++++|++.  ++|++ +||++.+|++++|+|+||||||||+++|+|.+.+..+
T Consensus       324 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G  379 (556)
T PRK11819        324 VIEAENLSKSFGDR--LLIDD-LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG  379 (556)
T ss_pred             EEEEEeEEEEECCe--eeecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            48999999999764  79999 9999999999999999999999999999998866543

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.1e-18  Score=143.85  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..|+++|++++|++.  ++|++ +||++++|++++|+|+||||||||+++|+|...+
T Consensus        15 ~~l~~~~l~~~~~~~--~vl~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   68 (265)
T PRK14252         15 QKSEVNKLNFYYGGY--QALKN-INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL   68 (265)
T ss_pred             ceEEEEEEEEEECCe--eeeee-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence            458999999999764  79999 9999999999999999999999999999998764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.74  E-value=1.1e-18  Score=139.57  Aligned_cols=142  Identities=14%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------------ccc
Q psy9640          30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------------VHA   96 (199)
Q Consensus        30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------------~~~   96 (199)
                      ||+++|++.  .+  | +||++++ ++++|+|+||||||||+++|+|.+.+..+.+ ..++...             ...
T Consensus         5 ~l~~~~~~~--~~--~-vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~~~~~~i   77 (214)
T cd03297           5 DIEKRLPDF--TL--K-IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI-VLNGTVLFDSRKKINLPPQQRKI   77 (214)
T ss_pred             eeeEecCCe--ee--C-ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEecccccchhhhhhHhhcE
Confidence            899999875  34  9 9999999 9999999999999999999999987654433 2222110             000


Q ss_pred             ccccCC-CCCCCch-HHHH------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          97 DIIVPR-GGENCVA-IDLI------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        97 ~~~~~~-~~~~~~~-~~~~------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      ...... ....... .+.+            ...+.+.+.   ...++...+..+.+|||||+||++||||++.      
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  154 (214)
T cd03297          78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLD---LLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL  154 (214)
T ss_pred             EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHH---HcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            111111 1110001 1111            001111111   1222222344667899999999999999976      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                     +.+.+.+....-+.+.|.++||.+.
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~  194 (214)
T cd03297         155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE  194 (214)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence                           4444444443335678999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.74  E-value=9.3e-19  Score=158.00  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|++++|++.  ++|++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus       322 ~l~~~~l~~~~~~~--~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G  377 (552)
T TIGR03719       322 VIEAENLSKGFGDK--LLIDD-LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG  377 (552)
T ss_pred             EEEEeeEEEEECCe--eeecc-ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence            38899999999764  79999 9999999999999999999999999999998866543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03073 ABC transporter F family; Provisional

Probab=99.73  E-value=6.3e-19  Score=162.84  Aligned_cols=57  Identities=16%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++||++.|++. ..+|++ +||++.+|++++|+||||||||||+++|+|.+.|..+
T Consensus       508 ~L~~~~ls~~y~~~-~~il~~-vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G  564 (718)
T PLN03073        508 IISFSDASFGYPGG-PLLFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG  564 (718)
T ss_pred             eEEEEeeEEEeCCC-CeeEec-cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            48899999999643 268999 9999999999999999999999999999998876543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.73  E-value=1.1e-18  Score=155.82  Aligned_cols=63  Identities=10%  Similarity=0.085  Sum_probs=51.9

Q ss_pred             Ccccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc
Q psy9640          25 GRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM   88 (199)
Q Consensus        25 ~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~   88 (199)
                      -++++|+++.|.. ....++++ +||++.+|++++|+|+||||||||+++|+|.+.|+..|.+..
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~-is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~  320 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDD-VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI  320 (500)
T ss_pred             eEEEeCCccccccccccccccc-ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEE
Confidence            3899999999842 12368999 999999999999999999999999999999987543344433

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.73  E-value=2.9e-18  Score=152.99  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=51.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL   85 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~   85 (199)
                      -|.++|+++.|+..  ++|++ +++++.+|+.+||+|+||||||||+++|+|.+.+..+.+
T Consensus         3 ~i~~~~ls~~~g~~--~l~~~-~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i   60 (530)
T COG0488           3 MITLENLSLAYGDR--PLLEN-VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV   60 (530)
T ss_pred             eEEEeeeEEeeCCc--eeecC-CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence            47899999999655  89999 999999999999999999999999999999987654433

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.72  E-value=2e-18  Score=154.37  Aligned_cols=53  Identities=15%  Similarity=0.120  Sum_probs=47.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      -++++|+++.|.    .++++ +||++++|++++|+||||||||||+++|+|.+.+..
T Consensus       265 ~l~~~~l~~~~~----~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~  317 (510)
T PRK09700        265 VFEVRNVTSRDR----KKVRD-ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG  317 (510)
T ss_pred             EEEEeCccccCC----Ccccc-eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence            388999998762    48999 999999999999999999999999999999886644

>KOG0054|consensus

Probab=99.72  E-value=2e-18  Score=165.60  Aligned_cols=133  Identities=13%  Similarity=0.052  Sum_probs=90.9

Q ss_pred             ccCcccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch-hcccc-ccc
Q psy9640          23 ARGRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF-YRVHA-DII   99 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~-~~~~~-~~~   99 (199)
                      +..++++|.+++|.. ...+.|+| |||++++|+.+||+|+.|||||+|+..|+|.+....+.+...... |..+. .+.
T Consensus       516 ~~~i~i~~~sfsW~~~~~~~tL~d-In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~  594 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSESPEPTLKD-INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ  594 (1381)
T ss_pred             CceEEEeeeeEecCCCCCcccccc-eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence            345999999999965 34469999 999999999999999999999999999999987655433222221 11111 111


Q ss_pred             cCCCC-----CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640         100 VPRGG-----ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus       100 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ...-.     ..+.+.+.-.+.++....+.....+|.|..|    +|.+|||||||||+||||...
T Consensus       595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~  660 (1381)
T KOG0054|consen  595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ  660 (1381)
T ss_pred             CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc
Confidence            11111     1133333333344333334455567777566    788999999999999999965

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=3.2e-18  Score=141.02  Aligned_cols=52  Identities=21%  Similarity=0.156  Sum_probs=47.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +.++++++.|.+.  +++++ +||++++|++++|+|+||||||||+++|+|++.+
T Consensus         9 ~~~~~~~~~~~~~--~~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (261)
T PRK14263          9 MDCKLDKIFYGNF--MAVRD-SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL   60 (261)
T ss_pred             EEEEeEEEEeCCE--EEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence            6788889999654  79999 9999999999999999999999999999999865

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.71  E-value=6e-18  Score=139.02  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL   85 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~   85 (199)
                      .||+++|+.. ..++++ +++ +++|++++|+||||||||||+++|+|++.+..+.+
T Consensus         4 ~~~~~~y~~~-~~~l~~-i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I   57 (255)
T cd03236           4 DEPVHRYGPN-SFKLHR-LPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF   57 (255)
T ss_pred             cCcceeecCc-chhhhc-CCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            4789999643 268999 995 99999999999999999999999999988765544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.71  E-value=4.2e-18  Score=169.49  Aligned_cols=169  Identities=14%  Similarity=0.073  Sum_probs=104.1

Q ss_pred             cCchhHHhhh-hhcc-cccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640           6 DTDADVRLAR-RLKR-DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus         6 ~~~~~~~~~~-~~~~-~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      |.|+|+...+ ++.. ...+.-++++|++++|++..+.++++ +||++++|+++||+|+||||||||+++|+|.+.+..+
T Consensus      1916 ~eD~DV~~Er~rV~~~~~~~~~L~v~nLsK~Y~~~~~~aL~~-ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG 1994 (2272)
T TIGR01257      1916 DEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTSSPAVDR-LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG 1994 (2272)
T ss_pred             CchhHHHHHHHHHhccCCCCceEEEEEEEEEECCCCceEEEe-eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            4566765554 3432 33344699999999997533579999 9999999999999999999999999999999877654


Q ss_pred             eeecccchhcc--------ccc-cccCCCCCCCchH-HH--------------HHHHHHHHHhcCceeecCCceeeecce
Q psy9640          84 TLLSMDSFYRV--------HAD-IIVPRGGENCVAI-DL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKR  139 (199)
Q Consensus        84 ~~i~~d~~~~~--------~~~-~~~~~~~~~~~~~-~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~  139 (199)
                      .+ ..++....        ..+ .+........... +.              ..+.+.+.+.   ..++....+....+
T Consensus      1995 ~I-~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe---~lgL~~~~dk~~~~ 2070 (2272)
T TIGR01257      1995 DA-TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQ---SLGLSLYADRLAGT 2070 (2272)
T ss_pred             EE-EECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCHHHhcCChhh
Confidence            33 22221110        001 1111111111010 11              1111111111   12233333446779


Q ss_pred             ecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         140 CAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       140 lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||||||||++||||++.                     +.+.+.+.... +.++|.++|+-+
T Consensus      2071 LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~me 2131 (2272)
T TIGR01257      2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSME 2131 (2272)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence            99999999999999975                     44455554333 677899999755

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.71  E-value=2.5e-18  Score=169.43  Aligned_cols=134  Identities=14%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhcccc---ccccCCCCCCCc
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVHA---DIIVPRGGENCV  108 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~~---~~~~~~~~~~~~  108 (199)
                      +++|+| +||++++|++++|+||||||||||++.|+|.+.+..+        ++++++.......   .+.+..    +.
T Consensus       439 ~~~l~~-i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~----~~  513 (1490)
T TIGR01271       439 TPVLKN-ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGL----SY  513 (1490)
T ss_pred             Ccceee-eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhcc----cc
Confidence            358999 9999999999999999999999999999999876543        2333332111000   000110    11


Q ss_pred             hHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------------hHHH-HH
Q psy9640         109 AIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------------MEQA-VH  162 (199)
Q Consensus       109 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------------~~~~-l~  162 (199)
                      +.+...+.++..........+|.+..+    .|..|||||||||+||||+..                     +.+. +.
T Consensus       514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~  593 (1490)
T TIGR01271       514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC  593 (1490)
T ss_pred             chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            111111122111111222344555443    578999999999999999975                     3332 33


Q ss_pred             hhccccceeEEEEEeCCC
Q psy9640         163 DVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       163 ~~~p~~~~~~~~~~~~~~  180 (199)
                      +...  +.++|.++|+.+
T Consensus       594 ~~~~--~~tvilvtH~~~  609 (1490)
T TIGR01271       594 KLMS--NKTRILVTSKLE  609 (1490)
T ss_pred             HHhc--CCeEEEEeCChH
Confidence            4443  467799999865

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.71  E-value=4.2e-18  Score=149.55  Aligned_cols=145  Identities=13%  Similarity=0.066  Sum_probs=94.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-------   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-------   97 (199)
                      -++++|++++|++-  ++|++ |+|++.+||+++++|.||||||||+|.|+|.+.|+.+. +..++......+       
T Consensus         8 ll~~~~i~K~FggV--~AL~~-v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~~   83 (500)
T COG1129           8 LLELRGISKSFGGV--KALDG-VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAA   83 (500)
T ss_pred             eeeeecceEEcCCc--eeecc-ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHhC
Confidence            58899999999886  89999 99999999999999999999999999999999876543 333322111000       


Q ss_pred             --------c------c------cCCCC---CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          98 --------I------I------VPRGG---ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        98 --------~------~------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                              +      .      ..+..   ..-.+.....+.....+..-   ......++...+||.||||-|+||||+
T Consensus        84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l---g~~~~~~~~v~~LsiaqrQ~VeIArAl  160 (500)
T COG1129          84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL---GLDIDPDTLVGDLSIAQRQMVEIARAL  160 (500)
T ss_pred             CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc---CCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence                    0      0      00000   00112233333332222211   111112444558999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQT  177 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~  177 (199)
                      ..                     +...+ +-+.+-++++|+|+|
T Consensus       161 ~~~arllIlDEPTaaLt~~E~~~Lf~~i-r~Lk~~Gv~ii~ISH  203 (500)
T COG1129         161 SFDARVLILDEPTAALTVKETERLFDLI-RRLKAQGVAIIYISH  203 (500)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhCCCEEEEEcC
Confidence            65                     33333 344467999999998

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.70  E-value=4.2e-18  Score=137.73  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=79.0

Q ss_pred             ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc----ccc-ccCCCCCCC-chHHHH---
Q psy9640          43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH----ADI-IVPRGGENC-VAIDLI---  113 (199)
Q Consensus        43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~----~~~-~~~~~~~~~-~~~~~~---  113 (199)
                      +++ +||++++|++++|+|+||||||||+++|+|.+.+..+ .+..++.....    ... ......... ...+.+   
T Consensus         1 l~~-is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKG-VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA   78 (230)
T ss_pred             CCc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence            467 8999999999999999999999999999998876543 33333211100    000 000000000 000110   


Q ss_pred             -------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHH
Q psy9640         114 -------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQ  159 (199)
Q Consensus       114 -------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~  159 (199)
                                   .+.+.+.+.   ...+....+..+.+|||||+||++||||+..                     +.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~  155 (230)
T TIGR01184        79 VDRVLPDLSKSERRAIVEEHIA---LVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE  155 (230)
T ss_pred             HHhcccCCCHHHHHHHHHHHHH---HcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence                         111111111   1122223344567899999999999999975                     455


Q ss_pred             HHHhhccccceeEEEEEeCCC
Q psy9640         160 AVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       160 ~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .+.+...+-+.+.|.++||.+
T Consensus       156 ~l~~~~~~~~~tii~~sH~~~  176 (230)
T TIGR01184       156 ELMQIWEEHRVTVLMVTHDVD  176 (230)
T ss_pred             HHHHHHHhcCCEEEEEeCCHH
Confidence            555554444567899999875

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.70  E-value=1.3e-17  Score=153.17  Aligned_cols=61  Identities=11%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-eeeeecccc
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP-WVTLLSMDS   90 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-~~~~i~~d~   90 (199)
                      ..+|++++|++.  .+|++ +|+++++|++++|+||||||||||+++|+|.+.+. ..|.+..++
T Consensus        70 ~~~~l~~~~~~~--~iL~~-vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG  131 (659)
T PLN03211         70 KISDETRQIQER--TILNG-VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN  131 (659)
T ss_pred             ccccccccCCCC--eeeeC-CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECC
Confidence            455666777543  79999 99999999999999999999999999999988653 344444443

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.69  E-value=3.7e-18  Score=137.98  Aligned_cols=135  Identities=16%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC---eeeeecccchhcc-------ccccccCCC---CCCCc
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP---WVTLLSMDSFYRV-------HADIIVPRG---GENCV  108 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~---~~~~i~~d~~~~~-------~~~~~~~~~---~~~~~  108 (199)
                      ++++ +||++++|++++|+|+||||||||+++|+|.+.+.   ..|.+..++....       .........   .....
T Consensus         1 ~l~~-vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             Cccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            4688 99999999999999999999999999999998762   3444433332110       001111110   00000


Q ss_pred             hH-HHH--------------HHHHHHHHhcCceeecC---CceeeecceecCCeeeeeeEEeccch--------------
Q psy9640         109 AI-DLI--------------VQHIHSQLQAGVSVDMP---QGYTYEGKRCAVSKICGVSILRAGET--------------  156 (199)
Q Consensus       109 ~~-~~~--------------~~~l~~~~~~~~~~~~~---~~~~~~g~~lSgGq~QrvaiaRA~~~--------------  156 (199)
                      .. +.+              .+.+.+.+.   ...++   ...+..+..|||||+|||+||||++.              
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L  156 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALE---AVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL  156 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHH---HcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence            10 000              001111111   11222   11234567899999999999999975              


Q ss_pred             -------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                             +.+.+.+....-+.++|.++|+.+
T Consensus       157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~  187 (230)
T TIGR02770       157 DVVNQARVLKLLRELRQLFGTGILLITHDLG  187 (230)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                   445555554433567899999865

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=6.3e-19  Score=137.43  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL   85 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~   85 (199)
                      -+.++|+.++|...  +++++ |||++++||+||+.||||+||||.+.++.|+..++.+.+
T Consensus         4 ~L~a~~l~K~y~kr--~Vv~~-Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i   61 (243)
T COG1137           4 TLVAENLAKSYKKR--KVVND-VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI   61 (243)
T ss_pred             EEEehhhhHhhCCe--eeeee-eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE
Confidence            47889999999876  89999 999999999999999999999999999998887765443

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.69  E-value=9.8e-18  Score=134.22  Aligned_cols=131  Identities=18%  Similarity=0.069  Sum_probs=78.2

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-c-ccCC-C-CCC--------Cch
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-I-IVPR-G-GEN--------CVA  109 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-~-~~~~-~-~~~--------~~~  109 (199)
                      +|++ +||++++|++++|+||||||||||+++|+|.+.+..+.+...++....... . ..+. . ..|        ...
T Consensus         2 vl~~-vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~   80 (213)
T PRK15177          2 VLDK-TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD   80 (213)
T ss_pred             eeee-eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence            6889 999999999999999999999999999999887665544312221110000 0 0000 0 000        000


Q ss_pred             HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhcccc
Q psy9640         110 IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKDI  168 (199)
Q Consensus       110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~  168 (199)
                      .......+    .  ....++...+.....|||||+||++||||++.                     +.+.+.+.+.+ 
T Consensus        81 ~~~~~~~~----~--~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~-  153 (213)
T PRK15177         81 GDEFSHFC----Y--QLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ-  153 (213)
T ss_pred             HHHHHHHH----H--HHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC-
Confidence            11111111    0  01223333445667899999999999999975                     33334333444 


Q ss_pred             ceeEEEEEeCCCC
Q psy9640         169 RIGKILIQTNKAT  181 (199)
Q Consensus       169 ~~~~~~~~~~~~~  181 (199)
                       -+.|+++|+.+.
T Consensus       154 -~~ii~vsH~~~~  165 (213)
T PRK15177        154 -KGLIVLTHNPRL  165 (213)
T ss_pred             -CcEEEEECCHHH
Confidence             357999998764

>PLN03073 ABC transporter F family; Provisional

Probab=99.69  E-value=6.1e-18  Score=156.32  Aligned_cols=51  Identities=14%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+++|++++|++.  .+|++ +||++.+|+++||+|+||||||||+++|+|..
T Consensus       177 ~I~i~nls~~y~~~--~ll~~-isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~  227 (718)
T PLN03073        177 DIHMENFSISVGGR--DLIVD-ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA  227 (718)
T ss_pred             eEEEceEEEEeCCC--EEEEC-CEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            49999999999754  69999 99999999999999999999999999999853

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.69  E-value=6.5e-18  Score=138.12  Aligned_cols=55  Identities=13%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD   89 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d   89 (199)
                      ++++||++.      .+|++ +||++++|++++|+|+||||||||+++|+|.+. + .|.+..+
T Consensus         1 ~~~~~l~~~------~~l~~-vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~   55 (248)
T PRK03695          1 MQLNDVAVS------TRLGP-LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFA   55 (248)
T ss_pred             Ccccccchh------ceecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEEC
Confidence            357788875      27899 999999999999999999999999999999874 3 3444433

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.69  E-value=1.3e-17  Score=148.64  Aligned_cols=54  Identities=9%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++|+++.+    +.+|++ +||++.+|++++|+|+||||||||+++|+|...+..+
T Consensus       250 ~i~~~~l~~~~----~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G  303 (491)
T PRK10982        250 ILEVRNLTSLR----QPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG  303 (491)
T ss_pred             EEEEeCccccc----Ccccce-eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc
Confidence            48999999974    258999 9999999999999999999999999999998876543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.69  E-value=5.8e-18  Score=129.08  Aligned_cols=121  Identities=14%  Similarity=0.209  Sum_probs=81.2

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCC
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGEN  106 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~  106 (199)
                      .++|+++.|++.  +++++ +++++++|++++|+|+||||||||+++|+|.+.+.. |.+..++.....           
T Consensus         1 ~~~~~~~~~~~~--~~l~~-~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~-G~i~~~~~~~~~-----------   65 (157)
T cd00267           1 EIENLSFRYGGR--TALDN-VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS-GEILIDGKDIAK-----------   65 (157)
T ss_pred             CeEEEEEEeCCe--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-cEEEECCEEccc-----------
Confidence            367899999765  79999 999999999999999999999999999999876543 323332211100           


Q ss_pred             CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhc
Q psy9640         107 CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVC  165 (199)
Q Consensus       107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~  165 (199)
                       .........              .++-.   +|||||+||++||||+..                     +.+.+.+..
T Consensus        66 -~~~~~~~~~--------------i~~~~---qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~  127 (157)
T cd00267          66 -LPLEELRRR--------------IGYVP---QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA  127 (157)
T ss_pred             -CCHHHHHhc--------------eEEEe---eCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence             000010000              01001   299999999999999975                     334444333


Q ss_pred             cccceeEEEEEeCCCC
Q psy9640         166 KDIRIGKILIQTNKAT  181 (199)
Q Consensus       166 p~~~~~~~~~~~~~~~  181 (199)
                      .. ..+.+.++|+.+.
T Consensus       128 ~~-~~tii~~sh~~~~  142 (157)
T cd00267         128 EE-GRTVIIVTHDPEL  142 (157)
T ss_pred             HC-CCEEEEEeCCHHH
Confidence            33 4577999998764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.67  E-value=2.5e-17  Score=164.08  Aligned_cols=149  Identities=11%  Similarity=0.025  Sum_probs=95.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~   96 (199)
                      .++++|+++.|++..+.++++ +|+++.+|++++|+|+||||||||+++|+|++.|..+.+ ..++...        ...
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~-lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I-~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV-LVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEe-eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE-EECCEECcchHHHHhhcE
Confidence            589999999996433579999 999999999999999999999999999999988765443 2222111        000


Q ss_pred             cc-ccCCCCCCCch-HH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 DI-IVPRGGENCVA-ID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~~-~~~~~~~~~~~-~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      .. ........... .+              ...+.+.+.+.   .+++....+..+.+||||||||++||||++.    
T Consensus      1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~---~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257      1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLE---DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            11 11111111000 01              11111111111   1233333455677999999999999999976    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       +.+.+.+.- . +.+.|.++||.+
T Consensus      1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd 1121 (2272)
T TIGR01257      1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD 1121 (2272)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH
Confidence                             455555552 2 567799999765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=2.1e-17  Score=127.67  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccc-----cc-
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHAD-----II-   99 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~-----~~-   99 (199)
                      ++.+|++..-...  ..|.+ +||++.+|+.+.|.||||||||||+|+|+|++.|..+.+...+.--....+     +. 
T Consensus         3 L~a~~L~~~R~e~--~lf~~-L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y   79 (209)
T COG4133           3 LEAENLSCERGER--TLFSD-LSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY   79 (209)
T ss_pred             chhhhhhhccCcc--eeecc-eeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence            5567777665444  78999 999999999999999999999999999999998876655443221110000     00 


Q ss_pred             --cCCCC----------------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640         100 --VPRGG----------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus       100 --~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                        ...+.                .+....+.+.+++ .........++|.+      +||.||++||||||-++.
T Consensus        80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al-~~vgL~g~~dlp~~------~LSAGQqRRvAlArL~ls  147 (209)
T COG4133          80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEAL-AQVGLAGLEDLPVG------QLSAGQQRRVALARLWLS  147 (209)
T ss_pred             hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHH-HHcCcccccccchh------hcchhHHHHHHHHHHHcC
Confidence              00000                1112234455555 33433445566655      899999999999998864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.67  E-value=2.3e-17  Score=128.41  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCCCchHHHHHHHHH
Q psy9640          39 VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIH  118 (199)
Q Consensus        39 ~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  118 (199)
                      ..++|++ +||++++|++++|+||||||||||++++++-     .|.+..++.....     .+... -.. .+ .+.+ 
T Consensus         7 ~~~~l~~-isl~i~~G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~-----~~~~~-~~~-~q-~~~l-   71 (176)
T cd03238           7 NVHNLQN-LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKF-----SRNKL-IFI-DQ-LQFL-   71 (176)
T ss_pred             eeeeecc-eEEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCccccc-----ccccE-EEE-hH-HHHH-
Confidence            3578999 9999999999999999999999999988531     1112111110000     00000 000 11 2222 


Q ss_pred             HHHhcCceeecCC-ceeeecceecCCeeeeeeEEeccch-----------------------hHHHHHhhccccceeEEE
Q psy9640         119 SQLQAGVSVDMPQ-GYTYEGKRCAVSKICGVSILRAGET-----------------------MEQAVHDVCKDIRIGKIL  174 (199)
Q Consensus       119 ~~~~~~~~~~~~~-~~~~~g~~lSgGq~QrvaiaRA~~~-----------------------~~~~l~~~~p~~~~~~~~  174 (199)
                      ..+      .+.. ..+..+.+|||||+||++||||+..                       +.+.+.+... .+.++|.
T Consensus        72 ~~~------~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIi  144 (176)
T cd03238          72 IDV------GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVIL  144 (176)
T ss_pred             HHc------CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            211      1111 1234566899999999999999865                       3344444432 3678899


Q ss_pred             EEeCCCC
Q psy9640         175 IQTNKAT  181 (199)
Q Consensus       175 ~~~~~~~  181 (199)
                      ++|+.+.
T Consensus       145 vSH~~~~  151 (176)
T cd03238         145 IEHNLDV  151 (176)
T ss_pred             EeCCHHH
Confidence            9998753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.67  E-value=3.4e-17  Score=146.29  Aligned_cols=142  Identities=12%  Similarity=0.118  Sum_probs=86.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~   95 (199)
                      ++++|+++       .++++ +||++.+|++++|+||||||||||+++|+|.+.+..+ .+..++...          ..
T Consensus       258 l~~~~l~~-------~~l~~-vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G-~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        258 LKVDNLSG-------PGVND-VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSG-YVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             EEEeCccc-------CCccc-ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHHCC
Confidence            67777764       36899 9999999999999999999999999999998876543 333322100          00


Q ss_pred             ccc-ccCC---CCCCCchH-H--------------------HHHHHHHHHHhcCceeecC-CceeeecceecCCeeeeee
Q psy9640          96 ADI-IVPR---GGENCVAI-D--------------------LIVQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVS  149 (199)
Q Consensus        96 ~~~-~~~~---~~~~~~~~-~--------------------~~~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~Qrva  149 (199)
                      ... ....   ........ +                    ...+.+.+.+.   ...++ ...+..+.+|||||+|||+
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgGekqrv~  405 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR---LFNIKTPSMEQAIGLLSGGNQQKVA  405 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHH---hcCCCCCCccCchhhCCHHHHHHHH
Confidence            011 1110   00000000 0                    00111111111   12332 2234567799999999999


Q ss_pred             EEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         150 ILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       150 iaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ||||++.                     +.+.+.+.... +.++|.++||.+
T Consensus       406 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~  456 (501)
T PRK10762        406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMP  456 (501)
T ss_pred             HHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            9999975                     55555555333 678899999865

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.66  E-value=2.5e-17  Score=147.03  Aligned_cols=150  Identities=11%  Similarity=0.018  Sum_probs=91.0

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch----hc-cccc
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF----YR-VHAD   97 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~----~~-~~~~   97 (199)
                      ..-++++|+++.|++. +.++++ +||.+.+|+.|||+||||+|||||+++|+|...+..+.+..-...    +- ....
T Consensus       319 ~~vl~~~~~~~~y~~~-~~l~~~-~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~  396 (530)
T COG0488         319 KLVLEFENVSKGYDGG-RLLLKD-LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE  396 (530)
T ss_pred             CeeEEEeccccccCCC-ceeecC-ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence            3458999999999664 589999 999999999999999999999999999999887763322211111    00 0000


Q ss_pred             cccCCCC-----C-CCc-hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------------
Q psy9640          98 IIVPRGG-----E-NCV-AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------------  156 (199)
Q Consensus        98 ~~~~~~~-----~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------------  156 (199)
                      .......     . .+. ....+...+...+.......      .....||||||-|+.+|+.++.              
T Consensus       397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL  470 (530)
T COG0488         397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL  470 (530)
T ss_pred             cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh------CchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence            0000000     0 000 01122222211111111222      2344899999999999999865              


Q ss_pred             ---hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                         ..+.|-+.+-+-.=++|+|+||..
T Consensus       471 Di~s~~aLe~aL~~f~Gtvl~VSHDr~  497 (530)
T COG0488         471 DIESLEALEEALLDFEGTVLLVSHDRY  497 (530)
T ss_pred             CHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence               333333333333337799999976

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.66  E-value=2.9e-17  Score=146.71  Aligned_cols=51  Identities=14%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      ++++|+++.      .++++ +||++++|++++|+||||||||||+++|+|.+.+..+
T Consensus       258 l~~~~~~~~------~~l~~-isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G  308 (501)
T PRK11288        258 LRLDGLKGP------GLREP-ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG  308 (501)
T ss_pred             EEEeccccC------Ccccc-eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCc
Confidence            667777632      58999 9999999999999999999999999999998865543

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.66  E-value=6.9e-17  Score=137.11  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc--------hhccc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS--------FYRVH   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~--------~~~~~   95 (199)
                      ..++++||.|.|+... .-+.- ||++|++||+|-|+|.|||||||++++|.|++.|..+++...+.        -|+..
T Consensus       321 ~~lelrnvrfay~~~~-FhvgP-iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L  398 (546)
T COG4615         321 KTLELRNVRFAYQDNA-FHVGP-INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL  398 (546)
T ss_pred             cceeeeeeeeccCccc-ceecc-eeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence            3699999999996542 44567 89999999999999999999999999999999987766543221        12211


Q ss_pred             cccc------cCC--CCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------
Q psy9640          96 ADII------VPR--GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------  156 (199)
Q Consensus        96 ~~~~------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------  156 (199)
                      .+-.      ++.  +..+..+.+.+...+ +.+.......+..+ ......||.|||.|+|+.-|++.           
T Consensus       399 fSavFsDyhLF~~ll~~e~~as~q~i~~~L-qrLel~~ktsl~d~-~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA  476 (546)
T COG4615         399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWL-QRLELAHKTSLNDG-RFSNLKLSTGQKKRLALLLALLEERDILVLDEWA  476 (546)
T ss_pred             HHHHhhhHhhhHhhhCCccCCChHHHHHHH-HHHHHhhhhcccCC-cccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence            1111      111  112223344444445 44444444444444 44566899999999999988875           


Q ss_pred             ----------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                +.+.+.-.+.+.+=+.+.|+||..
T Consensus       477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~  510 (546)
T COG4615         477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH  510 (546)
T ss_pred             ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch
Confidence                      667777778888889999999765

>PRK13409 putative ATPase RIL; Provisional

Probab=99.66  E-value=2.9e-17  Score=149.06  Aligned_cols=52  Identities=21%  Similarity=0.114  Sum_probs=45.0

Q ss_pred             ceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640          31 VIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL   85 (199)
Q Consensus        31 vs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~   85 (199)
                      ++++|... ..+|++ ++ .+++|+++||+||||||||||+++|+|.+.|..+.+
T Consensus        79 ~~~~yg~~-~~~L~~-l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i  130 (590)
T PRK13409         79 PVHRYGVN-GFKLYG-LP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY  130 (590)
T ss_pred             ceEEecCC-ceeEec-CC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence            88999653 268999 99 899999999999999999999999999888765443

>PTZ00243 ABC transporter; Provisional

Probab=99.66  E-value=2.3e-17  Score=163.02  Aligned_cols=114  Identities=11%  Similarity=0.086  Sum_probs=70.2

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccccccccCCC-CCCCchH
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVHADIIVPRG-GENCVAI  110 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~~~~~~~~~-~~~~~~~  110 (199)
                      +++|++ +||++++|++++|+|+||||||||++.|+|.+.+..+        ++++++.....  .....+. ...+.+.
T Consensus       673 ~~iL~~-isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~--~Tv~enI~~~~~~~~  749 (1560)
T PTZ00243        673 KVLLRD-VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMN--ATVRGNILFFDEEDA  749 (1560)
T ss_pred             ceeEee-eEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCC--CcHHHHHHcCChhhH
Confidence            368999 9999999999999999999999999999999876543        33444322110  0000000 0011111


Q ss_pred             HHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640         111 DLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus       111 ~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      +...+.++..........+|.++++    .|.+|||||||||+||||+..
T Consensus       750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~  799 (1560)
T PTZ00243        750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA  799 (1560)
T ss_pred             HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            2222222111111122334444433    578999999999999999975

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.65  E-value=4.4e-17  Score=149.61  Aligned_cols=150  Identities=16%  Similarity=0.122  Sum_probs=93.5

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      -++++|++++|+..  .+++|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...         
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~-i~~~g~~i~~~~~~~~~   81 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKG-ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT-YRVAGQDVATLDADALA   81 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEcCcCCHHHHH
Confidence            48899999999642  2469999 99999999999999999999999999999998765443 33332211         


Q ss_pred             ----cccccccCC-CCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEec
Q psy9640          94 ----VHADIIVPR-GGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus        94 ----~~~~~~~~~-~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                          ......... ....... .+.+              .+.+.+.+.   .+.+....+..+.+|||||+||++||||
T Consensus        82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~---~lgl~~~~~~~~~~LS~Gq~qrv~LAra  158 (648)
T PRK10535         82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQ---RLGLEDRVEYQPSQLSGGQQQRVSIARA  158 (648)
T ss_pred             HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence                001111111 1110000 1101              111111111   1233333345677999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ++.                     +.+.+.++.. ...+.|.++|+.+
T Consensus       159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~  205 (648)
T PRK10535        159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ  205 (648)
T ss_pred             HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH
Confidence            975                     4444444432 2567799999766

>KOG0060|consensus

Probab=99.65  E-value=3.1e-17  Score=144.36  Aligned_cols=169  Identities=15%  Similarity=0.131  Sum_probs=119.2

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe-------------eeeeccc
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-------------VTLLSMD   89 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~-------------~~~i~~d   89 (199)
                      +.-+++++|+..=|+....++++ +||+|..|+-+.|+||||||||+|+|.|+|++....             +-+++|.
T Consensus       431 Dn~i~~e~v~l~tPt~g~~lie~-Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr  509 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTNGDLLIEN-LSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR  509 (659)
T ss_pred             cceEEeeeeeecCCCCCceeeee-eeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence            35699999999988755567888 999999999999999999999999999998874321             2223333


Q ss_pred             chhcccc---ccccCC-CCCC---CchHHHHHHHHHHHHhcCceeecCCceeee-----cceecCCeeeeeeEEeccch-
Q psy9640          90 SFYRVHA---DIIVPR-GGEN---CVAIDLIVQHIHSQLQAGVSVDMPQGYTYE-----GKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        90 ~~~~~~~---~~~~~~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      .+...-.   -+..+. ..+.   ..+.+.+.+.+ +.......++...+++..     ...||+||+||++.||-... 
T Consensus       510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~L-e~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k  588 (659)
T KOG0060|consen  510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRIL-ENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK  588 (659)
T ss_pred             CCccccchhheeeccCccccccccCCCHHHHHHHH-HHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence            3221110   001110 0111   12334555555 444444445555555531     34799999999999998865 


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPK  193 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~  193 (199)
                                      ++..+++.+..++|++|.|.|-+..|.--.|+++|+-
T Consensus       589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~~g  641 (659)
T KOG0060|consen  589 PKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRMDG  641 (659)
T ss_pred             CceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEecC
Confidence                            8999999999999999999999988888888888874

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.65  E-value=1.4e-16  Score=138.19  Aligned_cols=146  Identities=15%  Similarity=0.128  Sum_probs=97.9

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccc-------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHA-------   96 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~-------   96 (199)
                      ..++++++++.|++.  .++++ |||++++|++.||.|+||+|||||+++|.|.+.|+.+.+.. ++......       
T Consensus         3 ~~l~~~~itK~f~~~--~And~-V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v-~G~~v~~~sP~dA~~   78 (501)
T COG3845           3 PALEMRGITKRFPGV--VANDD-VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV-DGKEVRIKSPRDAIR   78 (501)
T ss_pred             ceEEEeccEEEcCCE--EecCc-eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEE-CCEEeccCCHHHHHH
Confidence            358899999999965  79999 99999999999999999999999999999999887544332 22111000       


Q ss_pred             ---cccc------CC--CCCC-----------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          97 ---DIIV------PR--GGEN-----------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        97 ---~~~~------~~--~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                         .+.+      ++  ..+|           ..+.....+.+ +.+..  ...++...+..-.+||-|++|||.|.+|+
T Consensus        79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i-~~l~~--~yGl~vdp~~~V~dLsVG~qQRVEIlKaL  155 (501)
T COG3845          79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI-KELSE--RYGLPVDPDAKVADLSVGEQQRVEILKAL  155 (501)
T ss_pred             cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHH-HHHHH--HhCCCCCccceeecCCcchhHHHHHHHHH
Confidence               0000      00  0011           11223333334 22222  23444444555678999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEe
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQT  177 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~  177 (199)
                      ..                     +...+ +.+++-+.+.|+|+|
T Consensus       156 yr~a~iLILDEPTaVLTP~E~~~lf~~l-~~l~~~G~tIi~ITH  198 (501)
T COG3845         156 YRGARLLILDEPTAVLTPQEADELFEIL-RRLAAEGKTIIFITH  198 (501)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEec
Confidence            76                     33333 466777999999998

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.65  E-value=6.6e-17  Score=144.64  Aligned_cols=154  Identities=12%  Similarity=0.039  Sum_probs=102.7

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc-cc--hhccccc-c
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM-DS--FYRVHAD-I   98 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~-d~--~~~~~~~-~   98 (199)
                      ...+.++|++..-+... ..+++ .++++++|+.+-|.|+||||||||+|.|+|+.....+.+..- +.  ++..+.. +
T Consensus       390 ~~~i~~~nl~l~~p~~~-~ll~~-l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~  467 (604)
T COG4178         390 DHGITLENLSLRTPDGQ-TLLSE-LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYL  467 (604)
T ss_pred             cceeEEeeeeEECCCCC-eeecc-ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCC
Confidence            46799999999987653 78899 999999999999999999999999999999886554443221 21  2221110 1


Q ss_pred             c---------cCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640          99 I---------VPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus        99 ~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      +         .+.... ....+++.+.+.++........+.. .+.=...||+||+||+|+||.++.             
T Consensus       468 p~GtLre~l~YP~~~~-~~~d~~l~~vL~~vgL~~L~~rl~~-~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA  545 (604)
T COG4178         468 PQGTLREALCYPNAAP-DFSDAELVAVLHKVGLGDLAERLDE-EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA  545 (604)
T ss_pred             CCccHHHHHhCCCCCC-CCChHHHHHHHHHcCcHHHHHHHhc-cCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence            1         111111 2445666666644332211111111 011123799999999999999986             


Q ss_pred             --------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 --------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 --------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                              |.+.+.+-+|++.|  |.|.|-+...
T Consensus       546 LDe~~e~~l~q~l~~~lp~~tv--ISV~Hr~tl~  577 (604)
T COG4178         546 LDEETEDRLYQLLKEELPDATV--ISVGHRPTLW  577 (604)
T ss_pred             cChHHHHHHHHHHHhhCCCCEE--EEeccchhhH
Confidence                    77788888888666  9999866654

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.65  E-value=9.1e-17  Score=131.06  Aligned_cols=124  Identities=15%  Similarity=0.023  Sum_probs=75.0

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc-------------c-----------ccccCC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH-------------A-----------DIIVPR  102 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~-------------~-----------~~~~~~  102 (199)
                      ++|+.+..-+.+|-|+||||||||+|+|+|+..|+.+. +..++.-...             .           ++....
T Consensus        17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~-I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGR-IELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccE-EEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            68899887899999999999999999999999875432 2222211000             0           000000


Q ss_pred             -CCCC--CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hH
Q psy9640         103 -GGEN--CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------ME  158 (199)
Q Consensus       103 -~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~  158 (199)
                       ..+.  ......+.+.+ ..+      ...+-++..|.+|||||+|||||+||++.                     +.
T Consensus        96 NL~YG~~~~~~~~fd~iv-~lL------GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil  168 (352)
T COG4148          96 NLRYGMWKSMRAQFDQLV-ALL------GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL  168 (352)
T ss_pred             chhhhhcccchHhHHHHH-HHh------CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence             0011  11111222222 111      22233344567899999999999999987                     44


Q ss_pred             HHHHhhccccceeEEEEEeC
Q psy9640         159 QAVHDVCKDIRIGKILIQTN  178 (199)
Q Consensus       159 ~~l~~~~p~~~~~~~~~~~~  178 (199)
                      +-+-++..+..|-.+.|+|.
T Consensus       169 pylERL~~e~~IPIlYVSHS  188 (352)
T COG4148         169 PYLERLRDEINIPILYVSHS  188 (352)
T ss_pred             HHHHHHHHhcCCCEEEEecC
Confidence            44555666777777888874

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.65  E-value=7.4e-17  Score=144.40  Aligned_cols=143  Identities=10%  Similarity=0.084  Sum_probs=86.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------VH   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~~   95 (199)
                      ++++|+++       .+|++ +||++++|++++|+|+||||||||+++|+|.+.+..+. +..++...          ..
T Consensus       269 l~~~~l~~-------~~l~~-isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~-i~~~g~~i~~~~~~~~~~~~  339 (510)
T PRK15439        269 LTVEDLTG-------EGFRN-ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR-IMLNGKEINALSTAQRLARG  339 (510)
T ss_pred             EEEeCCCC-------CCccc-eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE-EEECCEECCCCCHHHHHhCC
Confidence            77788873       25899 99999999999999999999999999999988665433 33222100          00


Q ss_pred             cc-cccCC---CCCCCch-HHHH-----------------HHHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEe
Q psy9640          96 AD-IIVPR---GGENCVA-IDLI-----------------VQHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILR  152 (199)
Q Consensus        96 ~~-~~~~~---~~~~~~~-~~~~-----------------~~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaR  152 (199)
                      .. +....   ....... .+.+                 .+.+...+.   ...++ ...+..+.+|||||+|||+|||
T Consensus       340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgG~kqrl~la~  416 (510)
T PRK15439        340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRR---ALNIKFNHAEQAARTLSGGNQQKVLIAK  416 (510)
T ss_pred             cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHH---HcCCCCCCccCccccCCcHHHHHHHHHH
Confidence            00 00000   0000000 0100                 011111111   12332 2334567799999999999999


Q ss_pred             ccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         153 AGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       153 A~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      |++.                     +.+.+.++... +.++|+++||.+.
T Consensus       417 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~  465 (510)
T PRK15439        417 CLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEE  465 (510)
T ss_pred             HHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHH
Confidence            9975                     45555555433 6778999998763

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.62  E-value=2.2e-16  Score=127.15  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      |++++|++++|+|+||||||||+++|+|.+.+..+
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   35 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKG   35 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            57889999999999999999999999998866543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.62  E-value=2.9e-16  Score=126.78  Aligned_cols=31  Identities=23%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl   71 (199)
                      .+++++ +||++++|++++|+|+||||||||+
T Consensus         8 ~~~l~~-vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           8 EHNLKN-VDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             hhcccc-ceeecCCCcEEEEEcCCCCCHHHHH
Confidence            479999 9999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.61  E-value=5.4e-16  Score=152.18  Aligned_cols=64  Identities=11%  Similarity=0.061  Sum_probs=52.0

Q ss_pred             cccccceeecc--ccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccc
Q psy9640          26 RDLEGVIKQYV--NMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS   90 (199)
Q Consensus        26 i~l~nvs~~y~--~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~   90 (199)
                      ++++||+++|+  ...+.+|++ +|+.+++|++++|+||||||||||+++|+|...+  +..|.+..++
T Consensus       760 l~~~nl~~~~~~~~~~~~iL~~-vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G  827 (1394)
T TIGR00956       760 FHWRNLTYEVKIKKEKRVILNN-VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG  827 (1394)
T ss_pred             EEEEeeEEEecCCCCCcEeeeC-CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECC
Confidence            68999999985  233579999 9999999999999999999999999999998753  3334444443

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.60  E-value=6.7e-16  Score=141.11  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=38.2

Q ss_pred             ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          39 VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        39 ~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+++|+| +|+++++|++++|+||||||||||++.|+|...+
T Consensus        37 ~~~iL~~-vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~   77 (617)
T TIGR00955        37 RKHLLKN-VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK   77 (617)
T ss_pred             ccccccC-CEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3579999 9999999999999999999999999999998765

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.60  E-value=5.1e-16  Score=124.54  Aligned_cols=135  Identities=16%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-cc--cccccC-CCCCC---------
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-VH--ADIIVP-RGGEN---------  106 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-~~--~~~~~~-~~~~~---------  106 (199)
                      .++|+| |||++.+|+.+||+|+||||||||+|+|+|.+.|+.+.+........ -.  .++... .+.+|         
T Consensus        40 ~~aL~d-isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G  118 (249)
T COG1134          40 FWALKD-ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG  118 (249)
T ss_pred             EEEecC-ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence            479999 99999999999999999999999999999999887655443322110 00  001000 01111         


Q ss_pred             --CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------hHHHHHhhcc-
Q psy9640         107 --CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------MEQAVHDVCK-  166 (199)
Q Consensus       107 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------~~~~l~~~~p-  166 (199)
                        ....+...+.+.+....+...+.|..      ..|-||+-|++.+-|...                 +.+-|.+.+- 
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~~Pvk------tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e  192 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFIDQPVK------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE  192 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCchh------hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHH
Confidence              12223333333233333445566654      679999999887766543                 4444443332 


Q ss_pred             --ccceeEEEEEeCCCC
Q psy9640         167 --DIRIGKILIQTNKAT  181 (199)
Q Consensus       167 --~~~~~~~~~~~~~~~  181 (199)
                        +-..+.|+|+||.+.
T Consensus       193 ~~~~~~tiv~VSHd~~~  209 (249)
T COG1134         193 LVEKNKTIVLVSHDLGA  209 (249)
T ss_pred             HHHcCCEEEEEECCHHH
Confidence              224677999998763

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.60  E-value=2.5e-17  Score=122.35  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=36.6

Q ss_pred             ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      |++ +++++++|++++|+|+||||||||+++|+|.+.+..+.
T Consensus         1 L~~-v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~   41 (137)
T PF00005_consen    1 LKN-VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS   41 (137)
T ss_dssp             EEE-EEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE
T ss_pred             CCc-eEEEEcCCCEEEEEccCCCccccceeeecccccccccc
Confidence            578 99999999999999999999999999999988765443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.57  E-value=6.4e-16  Score=125.71  Aligned_cols=137  Identities=11%  Similarity=0.089  Sum_probs=87.6

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee--cccchh-----ccccccccC-CC---CCCC-
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL--SMDSFY-----RVHADIIVP-RG---GENC-  107 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i--~~d~~~-----~~~~~~~~~-~~---~~~~-  107 (199)
                      .++++| +||+|++|++++++|+|||||||++|+|.|.+-|..+.+-  ..+.+.     .......+. +.   +..+ 
T Consensus        37 ~~AVqd-isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQD-ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhhe-eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence            468999 9999999999999999999999999999999877643221  112221     111111110 00   0111 


Q ss_pred             ------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-------------------
Q psy9640         108 ------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------------  156 (199)
Q Consensus       108 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------------  156 (199)
                                  ...+.+.+.+ ..+  -.++++...++...+.||-|||.|+-||.|+++                   
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~-~~l--~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq  192 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERL-DFL--TEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ  192 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHH-HHH--HHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence                        1112222222 111  112333333344556899999999999999986                   


Q ss_pred             --hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                        +.+-++......+.++++.+|+=.
T Consensus       193 ~~ir~Flke~n~~~~aTVllTTH~~~  218 (325)
T COG4586         193 ANIREFLKEYNEERQATVLLTTHIFD  218 (325)
T ss_pred             HHHHHHHHHHHHhhCceEEEEecchh
Confidence              667777888888999999999544

>PLN03140 ABC transporter G family member; Provisional

Probab=99.57  E-value=1e-15  Score=150.27  Aligned_cols=54  Identities=13%  Similarity=0.077  Sum_probs=46.7

Q ss_pred             Ccccccceeeccc-----------cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVN-----------MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~-----------~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.++||++..+.           ..+.+|+| +|+.+++|++++|+||||||||||+++|+|...
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~-vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~  931 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLRE-VTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT  931 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeC-cEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence            3788999988742           12369999 999999999999999999999999999999864

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.56  E-value=1e-15  Score=120.80  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             cccccceeeccc---cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDLEGVIKQYVN---MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l~nvs~~y~~---~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +.+.|..+.|..   ..+++|++ ++++|.+|++|.|+|.||||||||++.|+|-+.+..+
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~-~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G   61 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNG-LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG   61 (263)
T ss_pred             cccccceeeecCCChhHHHHHhc-CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCc
Confidence            456777776632   34689999 9999999999999999999999999999998876543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=3e-15  Score=119.11  Aligned_cols=53  Identities=21%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++++|++.+-.+. +.+|++ +|+++++|++.+|+||||||||||++.|+|.-.
T Consensus         3 ~L~I~dLhv~v~~~-keILkg-vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~   55 (251)
T COG0396           3 MLEIKDLHVEVEGK-KEILKG-VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK   55 (251)
T ss_pred             eeEEeeeEEEecCc-hhhhcC-cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            37889999988653 489999 999999999999999999999999999998653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.51  E-value=1.1e-14  Score=143.16  Aligned_cols=50  Identities=12%  Similarity=0.133  Sum_probs=41.0

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC---CCeeeeecccc
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN---VPWVTLLSMDS   90 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~---~~~~~~i~~d~   90 (199)
                      +++|+| +|+.+++|++++|+||||||||||+++|+|...   .+..|.+..++
T Consensus        74 ~~iL~~-vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G  126 (1394)
T TIGR00956        74 FDILKP-MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG  126 (1394)
T ss_pred             ceeeeC-CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECC
Confidence            469999 999999999999999999999999999999863   23344444443

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.50  E-value=1.3e-14  Score=116.48  Aligned_cols=125  Identities=17%  Similarity=0.129  Sum_probs=82.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh------cccccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------RVHADI   98 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~------~~~~~~   98 (199)
                      .+++++|+++|...  .+++| +||.+++|++.|++|+|||||||++|+|+|++.+..+. +..++-.      .....+
T Consensus         2 ~L~ie~vtK~Fg~k--~av~~-isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~-I~~~g~~~~~~~~~rIGyL   77 (300)
T COG4152           2 ALEIEGVTKSFGDK--KAVDN-ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYL   77 (300)
T ss_pred             ceEEecchhccCce--eeecc-eeeeecCCeEEEeecCCCCCccchHHHHhccCCccCce-EEEcCcchhhhhhhhcccC
Confidence            37899999999876  89999 99999999999999999999999999999999876543 3333211      111112


Q ss_pred             ccCCCCCCCc---------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          99 IVPRGGENCV---------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        99 ~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      +-.|+.+...               ...++...+..++..   .+..........+||-|++|+|-+.-|+++
T Consensus        78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer---~~i~~~~~~kIk~LSKGnqQKIQfisaviH  147 (300)
T COG4152          78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLER---LEIVGKKTKKIKELSKGNQQKIQFISAVIH  147 (300)
T ss_pred             hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---ccccccccchHHHhhhhhhHHHHHHHHHhc
Confidence            3334433211               112223333233322   222222222456899999999999888876

>PLN03140 ABC transporter G family member; Provisional

Probab=99.49  E-value=6.3e-14  Score=137.91  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=38.2

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.+|+| +|+.+++|++++|+||||||||||+++|+|.+.+.
T Consensus       178 ~~IL~~-vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~  218 (1470)
T PLN03140        178 LTILKD-ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS  218 (1470)
T ss_pred             ceeccC-CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence            468999 99999999999999999999999999999998654

>KOG0064|consensus

Probab=99.49  E-value=1.3e-14  Score=126.95  Aligned_cols=157  Identities=13%  Similarity=0.057  Sum_probs=99.7

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC----------eeeeecccchh
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP----------WVTLLSMDSFY   92 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~----------~~~~i~~d~~~   92 (199)
                      ..+|.++||-..-|+.. -++.. ++|.+++|..+.|.||||||||+|.|.|.|++...          .+-++++..+.
T Consensus       479 ~~gI~lenIpvItP~~~-vvv~~-Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYm  556 (728)
T KOG0064|consen  479 FNGIILENIPVITPAGD-VLVPK-LTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYM  556 (728)
T ss_pred             ccceEEecCceeccCcc-eeecc-eeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCcc
Confidence            34688899888777653 36677 99999999999999999999999999998876431          22333333322


Q ss_pred             cccc--c-c-------ccCCCCCCCchHHHHHHHHHHHHhcCceeecCCceee---ecceecCCeeeeeeEEeccch---
Q psy9640          93 RVHA--D-I-------IVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY---EGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        93 ~~~~--~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ..-.  + .       .+.+....+.+...+.+.+    .....++...+++.   =-.-||||++||+++||-..+   
T Consensus       557 s~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v----~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk  632 (728)
T KOG0064|consen  557 SGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV----HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK  632 (728)
T ss_pred             CcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHh----hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence            1000  0 0       0111111122222222221    11122222223332   122699999999999998754   


Q ss_pred             --------------hHHHHHhhccccceeEEEEEeCCCCCCch
Q psy9640         157 --------------MEQAVHDVCKDIRIGKILIQTNKATDEPE  185 (199)
Q Consensus       157 --------------~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  185 (199)
                                    +++-+.++..+++|+++.|+|-+-.|--.
T Consensus       633 yalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h  675 (728)
T KOG0064|consen  633 YALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH  675 (728)
T ss_pred             hhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHH
Confidence                          88888899999999999999987766433

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.49  E-value=1.4e-14  Score=114.71  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=31.5

Q ss_pred             cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++ +++++.+| +++|+||||||||||++.|.+++++
T Consensus        14 ~~-~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~   48 (197)
T cd03278          14 DK-TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGE   48 (197)
T ss_pred             CC-eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45 78999999 9999999999999999999988754

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0927|consensus

Probab=99.48  E-value=2.7e-14  Score=125.17  Aligned_cols=146  Identities=12%  Similarity=0.092  Sum_probs=91.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc----hhcccccccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS----FYRVHADIIV  100 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~----~~~~~~~~~~  100 (199)
                      -+.+.||+|.|.+.. .++++ ++|.+..++.++++||||||||||++++.+.+.|..+.+.+-.-    .|........
T Consensus       389 vi~~~nv~F~y~~~~-~iy~~-l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~l  466 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNP-MIYKK-LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQL  466 (614)
T ss_pred             eEEEeccccCCCCcc-hhhhh-hhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhc
Confidence            488999999997663 78999 99999999999999999999999999999988876543322110    0110000000


Q ss_pred             CC--C--------CCCCchHHHHHHHHHHHHh-cCceeecCCceeeecceecCCeeeeeeEEeccch-------------
Q psy9640         101 PR--G--------GENCVAIDLIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-------------  156 (199)
Q Consensus       101 ~~--~--------~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-------------  156 (199)
                      .-  .        ..+....+.+...+ ..+. .+.....|.      .+||+|||.||..||++..             
T Consensus       467 dl~~s~le~~~~~~~~~~~~e~~r~il-grfgLtgd~q~~p~------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnh  539 (614)
T KOG0927|consen  467 DLDKSSLEFMMPKFPDEKELEEMRSIL-GRFGLTGDAQVVPM------SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNH  539 (614)
T ss_pred             CcchhHHHHHHHhccccchHHHHHHHH-HHhCCCccccccch------hhcccccchhHHHHHHHhcCCcEEEecCCCcC
Confidence            00  0        00012222333333 2221 223333333      3899999999999999865             


Q ss_pred             ----hHHHHHhhccccceeEEEEEeCC
Q psy9640         157 ----MEQAVHDVCKDIRIGKILIQTNK  179 (199)
Q Consensus       157 ----~~~~l~~~~p~~~~~~~~~~~~~  179 (199)
                          -.+.|++.+-+-.=|+|++.||=
T Consensus       540 LDi~tid~laeaiNe~~Ggvv~vSHDf  566 (614)
T KOG0927|consen  540 LDIETIDALAEAINEFPGGVVLVSHDF  566 (614)
T ss_pred             CCchhHHHHHHHHhccCCceeeeechh
Confidence                33445554444444778888864

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.48  E-value=1.6e-14  Score=122.56  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             EecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccccccCC-CCCCCch-H--------------HHHHH
Q psy9640          59 ICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADIIVPR-GGENCVA-I--------------DLIVQ  115 (199)
Q Consensus        59 IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~~~~~-~~~~~~~-~--------------~~~~~  115 (199)
                      |+||||||||||+++|+|++.+..+. +..++...       ....+.... ....... .              ....+
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGS-IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceE-EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            68999999999999999988765443 33322110       001111111 0000000 0              01111


Q ss_pred             HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------------------hHHHHHhhccccceeEEE
Q psy9640         116 HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------MEQAVHDVCKDIRIGKIL  174 (199)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~  174 (199)
                      .+.+.+.   ...+....+..+.+|||||+|||+||||+..                     +.+.+.+.....+.++|.
T Consensus        80 ~~~~~l~---~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii  156 (325)
T TIGR01187        80 RVLEALR---LVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF  156 (325)
T ss_pred             HHHHHHH---HcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            1111111   1233333345677999999999999999975                     555566665555678899


Q ss_pred             EEeCCC
Q psy9640         175 IQTNKA  180 (199)
Q Consensus       175 ~~~~~~  180 (199)
                      ++||.+
T Consensus       157 vTHd~~  162 (325)
T TIGR01187       157 VTHDQE  162 (325)
T ss_pred             EeCCHH
Confidence            999875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0062|consensus

Probab=99.44  E-value=3.2e-14  Score=124.07  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=44.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +|.+++.+..|.+.  ..|++ -++++..|..+|++|+||+|||||+|.|+.
T Consensus        80 Di~~~~fdLa~G~k--~LL~~-a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGK--ILLNK-ANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ceeeeeeeeeecch--hhhcC-CceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            57777778888765  78899 999999999999999999999999999987

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.41  E-value=1.8e-14  Score=112.27  Aligned_cols=62  Identities=19%  Similarity=0.104  Sum_probs=55.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD   89 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d   89 (199)
                      -+.++||+++|++.  .++++ +||++.+|+.-+|+||||+||||++-.|.|.-.|..+.++..+
T Consensus         5 iL~~~~vsVsF~GF--~Aln~-ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g   66 (249)
T COG4674           5 ILYLDGVSVSFGGF--KALND-LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG   66 (249)
T ss_pred             eEEEeceEEEEcce--eeeee-eEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcC
Confidence            47899999999988  79999 9999999999999999999999999999998887766655544

>KOG2355|consensus

Probab=99.41  E-value=4.6e-13  Score=105.39  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             cccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcc---
Q psy9640          20 DILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRV---   94 (199)
Q Consensus        20 ~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~---   94 (199)
                      .+.+..|++.++.|.|+... |++-| +|++++.|....++|.||||||||+++|+|-.-.  ..+.+...+.|.-.   
T Consensus         8 ~~~~~aievsgl~f~y~~~d-P~~~D-fnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~   85 (291)
T KOG2355|consen    8 AVSDFAIEVSGLQFKYKVSD-PIFFD-FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE   85 (291)
T ss_pred             hcccceEEEeccEEecccCC-ceEEE-EeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence            34455699999999998764 89999 8999999999999999999999999999885532  22333333333210   


Q ss_pred             -ccccccC-CCC--------CCCchHHHHHHHHHHHH-hc-----Cceee-cCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          95 -HADIIVP-RGG--------ENCVAIDLIVQHIHSQL-QA-----GVSVD-MPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 -~~~~~~~-~~~--------~~~~~~~~~~~~l~~~~-~~-----~~~~~-~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                       ..++... ..+        +-+...+.-..++..-. ..     ...+. +...+.-.-+.+|.|||+||.|+..++. 
T Consensus        86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P  165 (291)
T KOG2355|consen   86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP  165 (291)
T ss_pred             ccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence             0000000 000        00100011111110000 00     00011 1111122445799999999999988865 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEe---CCCCCCchhhhhcCCCCcc
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQT---NKATDEPELYYLRLPKDIK  196 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~  196 (199)
                                          +.+-++.-+...+-+.|.+||   .=++|+-.+||.+--+..+
T Consensus       166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence                                556667777888888899999   5578999999987655544

>KOG0927|consensus

Probab=99.40  E-value=6.4e-14  Score=122.86  Aligned_cols=56  Identities=16%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ...+.++|+++.|++.  ..++| +.|++.+|+.+||+|+|||||||++++|.+...|.
T Consensus        73 s~dvk~~sls~s~~g~--~l~kd-~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~  128 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHGV--ELIKD-VTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI  128 (614)
T ss_pred             cccceeeeeeeccCCc--eeeee-eeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC
Confidence            3479999999999887  88999 99999999999999999999999999999987653

>KOG0061|consensus

Probab=99.39  E-value=4.1e-13  Score=122.51  Aligned_cols=65  Identities=17%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             Ccccccceeecccc---ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccc
Q psy9640          25 GRDLEGVIKQYVNM---VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDS   90 (199)
Q Consensus        25 ~i~l~nvs~~y~~~---~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~   90 (199)
                      .+.++|++....+.   .+.+|++ |+..+++|++.||+||||||||||++.|+|....  ...|.+-.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~-vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG   94 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKG-VSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG   94 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeC-cEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence            57778888877544   4789999 9999999999999999999999999999998864  2344444443

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.34  E-value=4.8e-13  Score=110.20  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      .-|++ ++++++.|.+++|+|.||||||||++.+.
T Consensus         9 ~nl~~-v~~~ip~g~~~~vtGvSGsGKStL~~~~l   42 (261)
T cd03271           9 NNLKN-IDVDIPLGVLTCVTGVSGSGKSSLINDTL   42 (261)
T ss_pred             hcCCC-ceeeccCCcEEEEECCCCCchHHHHHHHH
Confidence            56899 99999999999999999999999998763

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]

Probab=99.34  E-value=2.5e-12  Score=101.25  Aligned_cols=73  Identities=40%  Similarity=0.581  Sum_probs=64.9

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.+.++.|-..--|.|.||++.|.+++++++|.++||||+++||++|.+|++||.|+|++++.+
T Consensus        53 ~~ieTP~~-~~~~~~~~~~~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~  125 (210)
T COG0035          53 VEIETPLG-PTEGVQIAGKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDER  125 (210)
T ss_pred             EEEECCCc-ceeeeeecCCcEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCC
Confidence            45677777 66777887666777999999999999999999999999999999999999999999999987754

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.33  E-value=3.3e-13  Score=107.93  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=36.3

Q ss_pred             CcccccceeeccccccccccccccCCCC-CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMV-EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~-~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+++|.. +|.+.     .+ ++|... +|++++|+|+||||||||++.|...+
T Consensus         5 ~i~l~nf~-~y~~~-----~~-i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l   52 (213)
T cd03279           5 KLELKNFG-PFREE-----QV-IDFTGLDNNGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             EEEEECCc-CcCCc-----eE-EeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence            47788887 66443     34 666643 58999999999999999999998544

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0066|consensus

Probab=99.33  E-value=1e-12  Score=113.45  Aligned_cols=148  Identities=16%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccccc---ccC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI---IVP  101 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~---~~~  101 (199)
                      -+-+.+|+|.|++. ++.+.+ ++|.|.--+.|||+||||.|||||+++|.|.+.|..+..--.........+.   ...
T Consensus       586 vLGlH~VtFgy~gq-kpLFkk-ldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L  663 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQ-KPLFKK-LDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL  663 (807)
T ss_pred             eeecccccccCCCC-Cchhhc-ccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh
Confidence            37789999999887 588999 9999999999999999999999999999999887543210000000000000   000


Q ss_pred             CCCCCC---------chHHHHHHHHHHHHhcCceeecCCceee-ecceecCCeeeeeeEEeccch---------------
Q psy9640         102 RGGENC---------VAIDLIVQHIHSQLQAGVSVDMPQGYTY-EGKRCAVSKICGVSILRAGET---------------  156 (199)
Q Consensus       102 ~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~~lSgGq~QrvaiaRA~~~---------------  156 (199)
                      +....+         ...+.....+ -.+      .+..-..| .-..|||||+-||++|--.+.               
T Consensus       664 ~~Eetp~EyLqr~FNlpyq~ARK~L-G~f------GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD  736 (807)
T KOG0066|consen  664 NGEETPVEYLQRKFNLPYQEARKQL-GTF------GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD  736 (807)
T ss_pred             ccccCHHHHHHHhcCCChHHHHHHh-hhh------hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence            000000         0111111122 111      01000011 345799999999999876543               


Q ss_pred             --hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                        ..+.|...+-+-.=|+|.|+||...
T Consensus       737 IESIDALaEAIney~GgVi~VsHDeRL  763 (807)
T KOG0066|consen  737 IESIDALAEAINEYNGGVIMVSHDERL  763 (807)
T ss_pred             hhhHHHHHHHHHhccCcEEEEecccce
Confidence              5667777777777788999999875

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.33  E-value=6.8e-13  Score=107.81  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++.+ ++     |++++|+||||||||||+++|.+.+
T Consensus        16 ~~~~~-~~-----~~~~~i~GpNGsGKStll~ai~~~l   47 (243)
T cd03272          16 TVIEP-FS-----PKHNVVVGRNGSGKSNFFAAIRFVL   47 (243)
T ss_pred             ccccc-CC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45555 44     7899999999999999999998654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.32  E-value=9.7e-13  Score=113.74  Aligned_cols=148  Identities=13%  Similarity=0.093  Sum_probs=87.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG  104 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~  104 (199)
                      .++..++++.|++..-.+    -.=++..||+++++||||-||||++++|+|.+.|..+......-.|+.+.-    ...
T Consensus       342 lv~y~~~~k~~g~F~L~V----~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI----~~~  413 (591)
T COG1245         342 LVEYPDLKKTYGDFKLEV----EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYI----SPD  413 (591)
T ss_pred             eeecchheeecCceEEEe----cCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceee----cCC
Confidence            455555666665431111    122567889999999999999999999999999876642111112222110    001


Q ss_pred             CCCchHHHHHHHHHHHHhc-------CceeecCCceeeecceecCCeeeeeeEEeccch---------------------
Q psy9640         105 ENCVAIDLIVQHIHSQLQA-------GVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------------------  156 (199)
Q Consensus       105 ~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------------------  156 (199)
                      .+....+.+.......+..       -..+.+..-++..-..||||+.||||||-|+..                     
T Consensus       414 ~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~  493 (591)
T COG1245         414 YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII  493 (591)
T ss_pred             CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence            1111112222222111111       012222222344556899999999999999864                     


Q ss_pred             hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .-..+.+.+....-+.+.|-||=.
T Consensus       494 vakvIRR~~e~~~kta~vVdHDi~  517 (591)
T COG1245         494 VAKVIRRFIENNEKTALVVDHDIY  517 (591)
T ss_pred             HHHHHHHHHhhcCceEEEEeccee
Confidence            445667888888888999998754

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.32  E-value=5.2e-13  Score=114.39  Aligned_cols=150  Identities=13%  Similarity=0.165  Sum_probs=87.8

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-------Ceeeeecc--cchhccccccccCCCCCCCchH
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSM--DSFYRVHADIIVPRGGENCVAI  110 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-------~~~~~i~~--d~~~~~~~~~~~~~~~~~~~~~  110 (199)
                      ..+++| +||++++|++++|+|+|||||||++++|+|....       ++.|.+..  +..     ....+...+....-
T Consensus       396 ryvlr~-vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----~a~iPge~Ep~f~~  469 (593)
T COG2401         396 RYVLRN-LNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----SALIPGEYEPEFGE  469 (593)
T ss_pred             eeeeec-eeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----hhccCcccccccCc
Confidence            478999 9999999999999999999999999999986522       12222111  110     00001100000111


Q ss_pred             HHHHHHHHHHHhc-------CceeecCC--ceeeecceecCCeeeeeeEEeccch---------------------hHHH
Q psy9640         111 DLIVQHIHSQLQA-------GVSVDMPQ--GYTYEGKRCAVSKICGVSILRAGET---------------------MEQA  160 (199)
Q Consensus       111 ~~~~~~l~~~~~~-------~~~~~~~~--~~~~~g~~lSgGq~QrvaiaRA~~~---------------------~~~~  160 (199)
                      .-+++++......       -....+..  .+-....+||.||+-|+.||+++..                     .-.-
T Consensus       470 ~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArk  549 (593)
T COG2401         470 VTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK  549 (593)
T ss_pred             hhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHH
Confidence            1222222111100       00011111  1222566899999999999998853                     3344


Q ss_pred             HHhhccccceeEEEEEeCCCCC-------CchhhhhcCCCCc
Q psy9640         161 VHDVCKDIRIGKILIQTNKATD-------EPELYYLRLPKDI  195 (199)
Q Consensus       161 l~~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~  195 (199)
                      +..+..+++++.+++||.++-.       .+..=|.+.|.+.
T Consensus       550 iselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~~e  591 (593)
T COG2401         550 ISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE  591 (593)
T ss_pred             HHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccccC
Confidence            5566678899999999988732       3344566666543

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.30  E-value=2.7e-13  Score=108.55  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=36.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +++++|.. +|.+.  .++++ +++     ++++|+|||||||||++++|.-.++
T Consensus         5 ~l~l~nfk-~~~~~--~~l~~-~~~-----~i~~ivGpNGaGKSTll~~i~~~~G   50 (212)
T cd03274           5 KLVLENFK-SYAGE--QVIGP-FHK-----SFSAIVGPNGSGKSNVIDSMLFVFG   50 (212)
T ss_pred             EEEEECcc-cCCCC--eeecc-CCC-----CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            45666665 66544  67888 777     7999999999999999999985544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.26  E-value=2.1e-11  Score=93.96  Aligned_cols=48  Identities=13%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++++||+..-      -|-. +|.++..|+++-++||||||||||+..|+|++..
T Consensus         4 ~qln~v~~~t------RL~p-lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~   51 (248)
T COG4138           4 MQLNDVAEST------RLGP-LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG   51 (248)
T ss_pred             eeeccccccc------cccc-cccccccceEEEEECCCCccHHHHHHHHhCCCCC
Confidence            4455665532      2334 6889999999999999999999999999998753

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.20  E-value=3.9e-12  Score=104.12  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=25.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.+++|+||||||||||++.|.+.+++.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~   52 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGIT   52 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            5689999999999999999999988653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.17  E-value=1.6e-10  Score=92.10  Aligned_cols=118  Identities=29%  Similarity=0.432  Sum_probs=85.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC-CCC---C--CCchHHHHHHHHHHHHhcCc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-RGG---E--NCVAIDLIVQHIHSQLQAGV  125 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~l~~~~~~~~  125 (199)
                      ++..+|||.|+|||||||+++.|...++...+.++++|+||+........ +..   .  ...+.+.+.+++ ..+..+.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L-~~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHL-KDLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHH-HHHHcCC
Confidence            45689999999999999999999999998899999999999976655543 222   1  234568889999 7777788


Q ss_pred             eeecCCceeeecceecC---CeeeeeeEEeccchhHHHHHhhccccce
Q psy9640         126 SVDMPQGYTYEGKRCAV---SKICGVSILRAGETMEQAVHDVCKDIRI  170 (199)
Q Consensus       126 ~~~~~~~~~~~g~~lSg---Gq~QrvaiaRA~~~~~~~l~~~~p~~~~  170 (199)
                      .+.+|.+....+.+.--   =.-+.|-|.-..+.+.+.-.+.+-++.|
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kI  132 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKI  132 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEE
Confidence            89999863333332210   0126788888888887755544445444

>KOG0059|consensus

Probab=99.14  E-value=3.9e-11  Score=113.80  Aligned_cols=61  Identities=18%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL   86 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i   86 (199)
                      ..+.++|+++.|+.... ++++ +++.+++||..|+.|+|||||||++++|.|...+..+.+.
T Consensus       563 ~~~~~~~L~k~y~~~~~-Av~~-ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~  623 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG-AVRG-LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEAL  623 (885)
T ss_pred             ceEEEcceeeeecchhh-hhcc-eEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEE
Confidence            56899999999987633 8999 9999999999999999999999999999998877654443

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.13  E-value=6.2e-11  Score=93.93  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=27.8

Q ss_pred             cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++ +++.+.+| +.+|+|+||||||||+..|.-.+..
T Consensus        13 ~~-~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~   47 (198)
T cd03276          13 RH-LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG   47 (198)
T ss_pred             ee-eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC
Confidence            55 66677666 7799999999999999998765543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.13  E-value=4e-11  Score=97.98  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=23.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+.+|+||||||||||+..|.+.+.+
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l~~   48 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVLGE   48 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            39999999999999999999988864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.99  E-value=2.8e-11  Score=96.33  Aligned_cols=28  Identities=25%  Similarity=0.376  Sum_probs=23.8

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      .++++.+| +++|+||||||||||++.|.
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34556567 99999999999999999985

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.99  E-value=2.8e-10  Score=81.33  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ++|++ ++|.+++|++++|+||||||||||++++.
T Consensus         3 ~aL~~-vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           3 TSLHG-VLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEe-eEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            68899 99999999999999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C

Probab=98.99  E-value=3.6e-10  Score=90.18  Aligned_cols=74  Identities=45%  Similarity=0.679  Sum_probs=60.9

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+..+.+......+.--|+|.||+..|.+++++++|++++|+|+++||+++.+|++||+|+|++++++
T Consensus        49 ~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~  122 (207)
T PF14681_consen   49 VEVETPLGHKYGGVILNEDKICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENR  122 (207)
T ss_dssp             EEEEESSSEEEEEEECSSGCEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTS
T ss_pred             EEEEcCCCcEEEEEEeecccEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCC
Confidence            35567777555554444447788999999999999999999999999999999999999999999999998654

...

>KOG0062|consensus

Probab=98.98  E-value=1.3e-10  Score=101.90  Aligned_cols=148  Identities=14%  Similarity=0.047  Sum_probs=95.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeeccc------chhccccc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMD------SFYRVHAD   97 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d------~~~~~~~~   97 (199)
                      +.+++.+|+|.|.....+.+.+ +++.++.-+.++++|++|+||||+++++.+-+.|...- +...      .++....+
T Consensus       361 p~l~i~~V~f~y~p~~y~~~~~-~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi-~~~~~r~ri~~f~Qhhvd  438 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEYQWRKQ-LGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGI-VGRHPRLRIKYFAQHHVD  438 (582)
T ss_pred             CeeEEEeeeccCCCcchhhhhc-cCCccchhhhhheeccCchhHHHHHHHHhccCCcccce-eeecccceecchhHhhhh
Confidence            3589999999996653368888 99999999999999999999999999999877654321 1111      11110000


Q ss_pred             c--------c-cCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------------
Q psy9640          98 I--------I-VPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------------  156 (199)
Q Consensus        98 ~--------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------------  156 (199)
                      .        . ..+. ......+++..|+......+.....+      -..|||||+-||++|-....            
T Consensus       439 ~l~~~v~~vd~~~~~-~pG~~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN  511 (582)
T KOG0062|consen  439 FLDKNVNAVDFMEKS-FPGKTEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTN  511 (582)
T ss_pred             HHHHHhHHHHHHHHh-CCCCCHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence            0        0 0000 00113345555552222222222212      24699999999999977643            


Q ss_pred             -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                           ..++|-+.+..-+=|+|.|+||.+
T Consensus       512 hLD~dsl~AL~~Al~~F~GGVv~VSHd~~  540 (582)
T KOG0062|consen  512 HLDRDSLGALAKALKNFNGGVVLVSHDEE  540 (582)
T ss_pred             cccHHHHHHHHHHHHhcCCcEEEEECcHH
Confidence                 566777777777779999999987

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.97  E-value=1e-10  Score=101.36  Aligned_cols=150  Identities=15%  Similarity=0.131  Sum_probs=83.2

Q ss_pred             cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeec---ccchhccccc--cc-----
Q psy9640          30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLS---MDSFYRVHAD--II-----   99 (199)
Q Consensus        30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~---~d~~~~~~~~--~~-----   99 (199)
                      ++.-+|.... ..|..  -...++|.++||+|+||-||||.++.|+|.+.|..+..-.   .|.......+  +.     
T Consensus        79 e~vHRYg~Ng-FkL~~--LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~  155 (591)
T COG1245          79 EVVHRYGVNG-FKLYR--LPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK  155 (591)
T ss_pred             cceeeccCCc-eEEec--CCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            3556674331 23323  3456899999999999999999999999998775443211   0111000000  00     


Q ss_pred             -cC---CCCCCCchHHHH--------HHHHHHHHhcC------ceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640         100 -VP---RGGENCVAIDLI--------VQHIHSQLQAG------VSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus       100 -~~---~~~~~~~~~~~~--------~~~l~~~~~~~------~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                       ..   +....+.-.+.+        .+.++..-..+      ..+.+..-++....+||||+-||+|||-|+..     
T Consensus       156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY  235 (591)
T COG1245         156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVY  235 (591)
T ss_pred             HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEE
Confidence             00   000000000111        11111110000      11233333444667899999999999999875     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCCCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKATDE  183 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~~~~  183 (199)
                                      +-..++++..+ .-++|+|-||=+.+|
T Consensus       236 ~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD  277 (591)
T COG1245         236 FFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLD  277 (591)
T ss_pred             EEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHH
Confidence                            55566666665 678899999977543

>TIGR00235 udk uridine kinase

Probab=98.96  E-value=1.6e-09  Score=86.27  Aligned_cols=81  Identities=35%  Similarity=0.544  Sum_probs=55.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccccccc-CCC---C--CCCchHHHHHHHHHHHHhcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV-PRG---G--ENCVAIDLIVQHIHSQLQAG  124 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~-~~~---~--~~~~~~~~~~~~l~~~~~~~  124 (199)
                      -++|++++|+|+||||||||++.|++.+....++++++|+++........ .+.   .  .+..+.+.+.+.+ ..+..+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~g   81 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHL-KNLKNG   81 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHH-HHHHCC
Confidence            46899999999999999999999999988767788999988654322211 111   1  1122334556666 445555


Q ss_pred             ceeecCCc
Q psy9640         125 VSVDMPQG  132 (199)
Q Consensus       125 ~~~~~~~~  132 (199)
                      ..+..|.+
T Consensus        82 ~~v~~p~y   89 (207)
T TIGR00235        82 SPIDVPVY   89 (207)
T ss_pred             CCEecccc
Confidence            56677664

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.93  E-value=4.4e-10  Score=106.46  Aligned_cols=42  Identities=26%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ++++|++.       ..|++ ++++|++|++++|+|+||||||||++-.+
T Consensus       613 l~l~~~~~-------~~Lk~-vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l  654 (924)
T TIGR00630       613 LTLKGARE-------NNLKN-ITVSIPLGLFTCITGVSGSGKSTLINDTL  654 (924)
T ss_pred             EEEEeCcc-------CCcCc-eEEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence            55666542       46899 99999999999999999999999998543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.90  E-value=4.1e-09  Score=83.67  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=47.9

Q ss_pred             Ccccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          25 GRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        25 ~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      -+.++|++..+...  ...++++ +|+++.+||+-|++|+||||||-+++.|.|.....+
T Consensus         3 LLDIrnL~IE~~TsqG~vK~VD~-v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW   61 (330)
T COG4170           3 LLDIRNLTIEFKTSQGWVKAVDR-VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNW   61 (330)
T ss_pred             cccccceEEEEecCCCceEeeee-eeeeeccceeeeeeccCCCchhHHHHHHhcccccce
Confidence            46788888887432  3468899 999999999999999999999999999999776543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.90  E-value=5.4e-09  Score=82.43  Aligned_cols=76  Identities=41%  Similarity=0.654  Sum_probs=49.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC------CCCCCCchHHHHHHHHHHHHhcCceeec
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP------RGGENCVAIDLIVQHIHSQLQAGVSVDM  129 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~  129 (199)
                      +++|+|+||||||||++.|.+.+....+.+++.|+++.........      ....+..+.+.+.+.+ ..+.....+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~~~   79 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHL-QDLKNGKSVEI   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHH-HHHHCCCCEec
Confidence            5899999999999999999999865667888999887543322111      1112234455555555 44444445566


Q ss_pred             CCc
Q psy9640         130 PQG  132 (199)
Q Consensus       130 ~~~  132 (199)
                      |..
T Consensus        80 p~~   82 (198)
T cd02023          80 PVY   82 (198)
T ss_pred             ccc
Confidence            654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.89  E-value=6.7e-10  Score=97.59  Aligned_cols=47  Identities=13%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      .+|++ |++++++|++++|+||||||||||++  .++..+..++.+..++
T Consensus        20 ~vL~~-Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg   66 (504)
T TIGR03238        20 RILVK-FNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDA   66 (504)
T ss_pred             HHHhC-CceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECC
Confidence            68999 99999999999999999999999999  5666666665454443

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.89  E-value=7.1e-10  Score=110.03  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=29.7

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVAT   72 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~   72 (199)
                      ..|++ +++++++|++++|+|+||||||||++
T Consensus       609 ~~Lk~-isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        609 HNLKD-LTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             CCccc-eEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            46899 99999999999999999999999998

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.85  E-value=1.3e-08  Score=80.96  Aligned_cols=80  Identities=35%  Similarity=0.644  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC-C-----CCCCCchHHHHHHHHHHHHhcCc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-R-----GGENCVAIDLIVQHIHSQLQAGV  125 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~~~~~~~~  125 (199)
                      .++.+|+|+|+||||||||++.|++.+....+.++++|+++......... +     ...+..+.+.+.+.+ ..+....
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~   82 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHL-KALKAGK   82 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHH-HHHHcCC
Confidence            57899999999999999999999999976778889999987654322111 1     111233456677777 4455555


Q ss_pred             eeecCCc
Q psy9640         126 SVDMPQG  132 (199)
Q Consensus       126 ~~~~~~~  132 (199)
                      .+..|..
T Consensus        83 ~v~~p~~   89 (209)
T PRK05480         83 AIEIPVY   89 (209)
T ss_pred             ccccCcc
Confidence            5666653

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.83  E-value=2.1e-09  Score=102.14  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ++++|++.       ..|++ +++++.+|++++|+|+||||||||++.++
T Consensus       615 L~v~~l~~-------~~L~~-isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        615 LKLKGARE-------NNLKN-VDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             EEecCCcc-------CCcCc-eEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            56666641       35899 99999999999999999999999998864

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.82  E-value=1.9e-08  Score=84.13  Aligned_cols=81  Identities=26%  Similarity=0.377  Sum_probs=56.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC--C--Ceeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN--V--PWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQL  121 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~--~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~  121 (199)
                      .+...++||+|+|||||||++++|.+++.  +  ..+.++++|+++.......     ...+.....+.+.+.+.+ ..+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L-~~L  137 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFL-SDL  137 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHH-HHH
Confidence            45679999999999999999999998885  2  3466788999886433211     122333445566777776 445


Q ss_pred             hcCc-eeecCCc
Q psy9640         122 QAGV-SVDMPQG  132 (199)
Q Consensus       122 ~~~~-~~~~~~~  132 (199)
                      ..+. .+..|.+
T Consensus       138 k~g~~~v~~P~Y  149 (290)
T TIGR00554       138 KSGKPNVTAPVY  149 (290)
T ss_pred             HCCCCceecCcc
Confidence            5444 4778876

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.81  E-value=1.8e-08  Score=81.11  Aligned_cols=76  Identities=25%  Similarity=0.442  Sum_probs=51.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHHhc-Cc
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQLQA-GV  125 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~-~~  125 (199)
                      ++||+|+||||||||++.|++.+.    ...+.++++|+++.......     ..+......+.+.+.+.+ ..+.. ..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L-~~l~~g~~   79 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFL-KDIKSGKK   79 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHH-HHHHCCCC
Confidence            589999999999999999999984    34577889999976533211     112223344556666666 44544 45


Q ss_pred             eeecCCc
Q psy9640         126 SVDMPQG  132 (199)
Q Consensus       126 ~~~~~~~  132 (199)
                      .+..|.+
T Consensus        80 ~v~~P~y   86 (220)
T cd02025          80 NVKIPVY   86 (220)
T ss_pred             cEEcccc
Confidence            6777765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PTZ00301 uridine kinase; Provisional

Probab=98.80  E-value=2.1e-08  Score=80.25  Aligned_cols=78  Identities=32%  Similarity=0.543  Sum_probs=53.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc----CCCeeeeecccchhccccccccC-CC---CC--CCchHHHHHHHHHHHHhc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFYRVHADIIVP-RG---GE--NCVAIDLIVQHIHSQLQA  123 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l----~~~~~~~i~~d~~~~~~~~~~~~-~~---~~--~~~~~~~~~~~l~~~~~~  123 (199)
                      -.+|||.|+||||||||++.|...+    ++..+.++++|+||+....+... +.   ..  ...+.+.+.+++ ..+..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l-~~L~~   81 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHL-RELKS   81 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHH-HHHHc
Confidence            3689999999999999999887554    45556788999998765333221 11   12  223456777778 66666


Q ss_pred             CceeecCCc
Q psy9640         124 GVSVDMPQG  132 (199)
Q Consensus       124 ~~~~~~~~~  132 (199)
                      +..+..|.+
T Consensus        82 g~~i~~P~y   90 (210)
T PTZ00301         82 GKTVQIPQY   90 (210)
T ss_pred             CCcccCCCc
Confidence            667777765

>PLN02541 uracil phosphoribosyltransferase

Probab=98.79  E-value=1.5e-08  Score=82.53  Aligned_cols=73  Identities=21%  Similarity=0.287  Sum_probs=59.2

Q ss_pred             CceeecCCceeeecceecCC-eeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccC
Q psy9640         124 GVSVDMPQGYTYEGKRCAVS-KICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD  197 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgG-q~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  197 (199)
                      ...++.|.+ .+.+..+... +.--|+|.||++.|.+++.+++|++++|+|+++||+.+.++++||+|+|.+++.
T Consensus        83 ~~~V~TP~g-~~~~~~~~~~~~i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~  156 (244)
T PLN02541         83 TGEVQTPMG-VADVEFIDPREPVAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPE  156 (244)
T ss_pred             ceEEECCCC-eEEEEeecCCCcEEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCC
Confidence            345666766 2223334433 266789999999999999999999999999999999999999999999998753

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.76  E-value=3.5e-10  Score=89.58  Aligned_cols=31  Identities=26%  Similarity=0.248  Sum_probs=27.8

Q ss_pred             cccccCCCCCC-eEEEEecCCCCcHHHHHHHHH
Q psy9640          44 STFIAPSMVEP-FVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        44 ~~~vsl~i~~g-~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      -+ +++++.+| .+++|+||||||||||++.|.
T Consensus        18 ~~-~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          18 VP-LDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             Ec-ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            34 68999999 489999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG1017|consensus

Probab=98.75  E-value=1.8e-08  Score=78.47  Aligned_cols=75  Identities=45%  Similarity=0.862  Sum_probs=68.9

Q ss_pred             CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCCC
Q psy9640         124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK  199 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  199 (199)
                      ...+..|.|+.++|-++--|. ..|+|.|++-+|+++|++|+..++||.|+|..|++|-++..||.|+|.||..++
T Consensus       117 ec~VtTPTG~kYEGikf~~GN-CGVSi~RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~  191 (267)
T KOG1017|consen  117 ECTVTTPTGFKYEGIKFNRGN-CGVSICRSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRR  191 (267)
T ss_pred             ceeeecCCcceeeceeecCCC-cceEEEechHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCccccee
Confidence            346788999999988888787 689999999999999999999999999999999999999999999999998753

>KOG0066|consensus

Probab=98.74  E-value=5.3e-09  Score=90.74  Aligned_cols=50  Identities=20%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|.++|.+.+-.+.  ..+.+ .++.|-.|..+|++||||-|||||++.|+..
T Consensus       264 DIKiEnF~ISA~Gk--~LFvn-A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R  313 (807)
T KOG0066|consen  264 DIKIENFDISAQGK--LLFVN-ASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR  313 (807)
T ss_pred             cceeeeeeeecccc--eeeec-cceEEEecceecccCCCCCchHHHHHHHHhh
Confidence            57788877766554  67788 8999999999999999999999999999864

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.74  E-value=2.5e-08  Score=77.79  Aligned_cols=76  Identities=32%  Similarity=0.466  Sum_probs=51.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC--CeeeeecccchhccccccccCCCCCC-C--chHHHHHHHHHHHHhcCceeecC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIVPRGGEN-C--VAIDLIVQHIHSQLQAGVSVDMP  130 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~  130 (199)
                      +++|.|+||||||||++.|+..+..  ..+..+++|++++.........+..+ +  .+.+.+.+++ ..+.....+..|
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l-~~l~~~~~~~~p   79 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNL-HDLLNGKEVELP   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHH-HHHHCCCeeecc
Confidence            5899999999999999999998752  35667899999875411111111111 1  3567777777 446566677777


Q ss_pred             Cc
Q psy9640         131 QG  132 (199)
Q Consensus       131 ~~  132 (199)
                      .+
T Consensus        80 ~y   81 (179)
T cd02028          80 IY   81 (179)
T ss_pred             cc
Confidence            64

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.72  E-value=3.5e-09  Score=81.18  Aligned_cols=31  Identities=29%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++.+.++.+..|+|||||||||+++.+.-.+
T Consensus        15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~   45 (162)
T cd03227          15 DVTFGEGSLTIITGPNGSGKSTILDAIGLAL   45 (162)
T ss_pred             EEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4455566799999999999999999976544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG4203|consensus

Probab=98.71  E-value=1.5e-08  Score=89.80  Aligned_cols=191  Identities=40%  Similarity=0.633  Sum_probs=111.6

Q ss_pred             CeeeecCchhHHhhhhhcccccccCcccccceeeccccccccccccccCCCC-CCeEEEEecCC-----CCcHHHHHHHH
Q psy9640           1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMV-EPFVIGICGGS-----ASGKTTVATKI   74 (199)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~-~g~iv~IvG~S-----GsGKSTLl~~L   74 (199)
                      +|+|+|++.|.++..++.++....+..++++..+|....++.+..|+.-+-. ..-++-..|.+     .+.+-.+.++.
T Consensus       176 ~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~  255 (473)
T KOG4203|consen  176 MKLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILA  255 (473)
T ss_pred             ceEEEecCcchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhh
Confidence            6899999999999999999999999999999999976555555554432211 11222222211     11111111111


Q ss_pred             HHHcCCCeeeeecccchhccc-cc-----cccCCCCCCCchHHHHHHHHHHHHhc---------CceeecCCceeeecce
Q psy9640          75 IESLNVPWVTLLSMDSFYRVH-AD-----IIVPRGGENCVAIDLIVQHIHSQLQA---------GVSVDMPQGYTYEGKR  139 (199)
Q Consensus        75 ~~~l~~~~~~~i~~d~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~g~~  139 (199)
                      .+-..     .+..+.+.... ..     ....+..-...++....+++.....+         ...+..+.+....+.+
T Consensus       256 ~~~~~-----~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~  330 (473)
T KOG4203|consen  256 EKSYV-----RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVN  330 (473)
T ss_pred             ccccc-----cccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhccc
Confidence            00000     00000000000 00     00011111112222222222121211         1223333343334555


Q ss_pred             ecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccC
Q psy9640         140 CAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKD  197 (199)
Q Consensus       140 lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  197 (199)
                      .- .|.+.+++-||+-.|...+++++++.++++|+++||+++.+|++||.++|+++..
T Consensus       331 ~~-~~i~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~  387 (473)
T KOG4203|consen  331 FC-KQICGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISD  387 (473)
T ss_pred             cc-chhccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCcccccc
Confidence            54 7888999999999999999999999999999999999999999999999999865

>PLN02796 D-glycerate 3-kinase

Probab=98.70  E-value=2.8e-08  Score=84.54  Aligned_cols=90  Identities=27%  Similarity=0.380  Sum_probs=59.4

Q ss_pred             ccccccccCCC---C-----CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcccccccc----------
Q psy9640          41 PAFSTFIAPSM---V-----EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVHADIIV----------  100 (199)
Q Consensus        41 ~~l~~~vsl~i---~-----~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~~~~~~~----------  100 (199)
                      .++++ +++++   +     +..++||+|+||||||||++.|.+.+...  ..+.++.|++|........          
T Consensus        80 ~il~~-l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~L  158 (347)
T PLN02796         80 WCEDQ-LEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNAL  158 (347)
T ss_pred             HHHHH-HHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhh
Confidence            56677 77776   3     44569999999999999999999998754  5788999999864432211          


Q ss_pred             --CCCCCCCchHHHHHHHHHHHHh----cCceeecCCc
Q psy9640         101 --PRGGENCVAIDLIVQHIHSQLQ----AGVSVDMPQG  132 (199)
Q Consensus       101 --~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~  132 (199)
                        .|+.....+.+...+.+ ..+.    .+..+..|.+
T Consensus       159 l~~RG~PgThDl~Ll~e~L-~~L~~~~~~g~~v~iP~y  195 (347)
T PLN02796        159 LELRGNAGSHDLALGVETL-EALRKLNKEGSKMKVPRY  195 (347)
T ss_pred             hhcCCCCchhHHHHHHHHH-HHHHhhhcCCCceecCCC
Confidence              11112234445566555 3333    3556778876

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.70  E-value=3.8e-09  Score=82.39  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.+|+||||||||+++..|.-.+.
T Consensus        23 ~~~~i~G~NGsGKSnil~Ai~~~~~   47 (178)
T cd03239          23 SFNAIVGPNGSGKSNIVDAICFVLG   47 (178)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcC
Confidence            3999999999999999988865443

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0065|consensus

Probab=98.66  E-value=1.3e-08  Score=97.58  Aligned_cols=40  Identities=15%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          38 MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        38 ~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+..|+| |+=-++||-..||+|+||||||||+++|++..
T Consensus       802 ~~~qLL~~-V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~  841 (1391)
T KOG0065|consen  802 GTRQLLNN-VSGAFKPGVLTALMGESGAGKTTLLDVLAGRK  841 (1391)
T ss_pred             cceEhhhc-CceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence            34679999 99999999999999999999999999999875

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.66  E-value=1.5e-08  Score=88.64  Aligned_cols=63  Identities=11%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      -+++++++..-... ...+++ |||++..||++||+|-+|-|.+.|+..|+|+..+.. |.+..++
T Consensus       257 vL~V~~L~v~~~~~-~~~v~~-vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~-G~I~l~G  319 (501)
T COG3845         257 VLEVEDLSVKDRRG-VTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS-GRILLNG  319 (501)
T ss_pred             EEEEeeeEeecCCC-Cceeee-eeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC-ceEEECC
Confidence            48899998875432 367899 999999999999999999999999999999886655 4444443

>TIGR00767 rho transcription termination factor Rho

Probab=98.65  E-value=2e-08  Score=86.85  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=49.4

Q ss_pred             ccCcccccceeecccccccccc-----------ccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFS-----------TFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~-----------~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ...+.++||++.|++. +.+|+           | +.+.+.+|+.++|+||+|||||||++.|+..+..
T Consensus       128 ~~ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id-~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       128 KNRVLFENLTPLYPNE-RLRLETSTEDLSTRVLD-LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CCCeEEEEeeecCCCc-cceeecCccccceeeee-eEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            3469999999999875 36786           8 9999999999999999999999999999987643

Members of this family differ in the specificity of RNA binding.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.62  E-value=3.2e-08  Score=81.11  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=29.7

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      =+.+.+|+.++|+|++|+|||||++.|.+.+..
T Consensus        10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             ecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            457889999999999999999999999987754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.61  E-value=1.8e-07  Score=84.42  Aligned_cols=108  Identities=19%  Similarity=0.333  Sum_probs=65.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCCCCC--chHHHHHHHHHHHHhcCceeec
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENC--VAIDLIVQHIHSQLQAGVSVDM  129 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~  129 (199)
                      ....+|||.||||||||||++.|++.+  +..+++++|+++.....  .......+  .+.+.+.+++ ..+..+..+..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL--p~vgvIsmDdy~~~~~~--i~~nfD~P~a~D~d~L~enL-~~Lr~GksV~i  137 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVISMDNYNDSSRI--IDGNFDDPRLTDYDTLLDNI-HDLKAGKSVQV  137 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC--CCcEEEEEcceecchhh--hCccCCChhhcchhHHHHHH-HHHhCCCceec
Confidence            345799999999999999999999987  35788999998532211  11111122  2345666777 55666666777


Q ss_pred             CCceeeecceecCCe-----eeeeeEEeccchhHHHHHhhc
Q psy9640         130 PQGYTYEGKRCAVSK-----ICGVSILRAGETMEQAVHDVC  165 (199)
Q Consensus       130 ~~~~~~~g~~lSgGq-----~QrvaiaRA~~~~~~~l~~~~  165 (199)
                      |.+ +..-...++..     ..+|-|.-....+.+.+...+
T Consensus       138 PiY-Df~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~Ll  177 (656)
T PLN02318        138 PIY-DFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLL  177 (656)
T ss_pred             Ccc-ccccCcccCCceeecCCCcEEEEechhhccHhHHhhC
Confidence            765 33211222221     124566666666666665555

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.59  E-value=3.6e-08  Score=79.00  Aligned_cols=33  Identities=21%  Similarity=0.136  Sum_probs=25.8

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +.+...+| +.+|+|+||||||||+..|.-.+..
T Consensus        17 ~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~   49 (213)
T cd03277          17 TEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGG   49 (213)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45555444 6689999999999999999776643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.57  E-value=5e-08  Score=86.44  Aligned_cols=47  Identities=15%  Similarity=0.231  Sum_probs=38.4

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      .++| +||++.+||++||.|--|||+|-+++.|.|... ...|.+..++
T Consensus       274 ~~~d-vSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~G  320 (500)
T COG1129         274 KVRD-VSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLDG  320 (500)
T ss_pred             ceeC-ceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEECC
Confidence            4688 999999999999999999999999999999443 3345554444

>PRK05439 pantothenate kinase; Provisional

Probab=98.55  E-value=3.2e-07  Score=77.36  Aligned_cols=82  Identities=28%  Similarity=0.421  Sum_probs=57.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccchhcccccccc-----CCCCCCCchHHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVHADIIV-----PRGGENCVAIDLIVQHIHSQ  120 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~  120 (199)
                      .-....+|||.|++||||||+++.|...+..    ..+.++++|+|+.....+..     .++.....+.+.+.+.+ ..
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L-~~  160 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFL-SD  160 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHH-HH
Confidence            3456789999999999999999999987742    46889999999876543321     12233345567777777 55


Q ss_pred             HhcCc-eeecCCc
Q psy9640         121 LQAGV-SVDMPQG  132 (199)
Q Consensus       121 ~~~~~-~~~~~~~  132 (199)
                      +..+. .+..|.+
T Consensus       161 Lk~G~~~v~~P~Y  173 (311)
T PRK05439        161 VKSGKPNVTAPVY  173 (311)
T ss_pred             HHcCCCeEEeeeE
Confidence            55544 3777776

>PLN02348 phosphoribulokinase

Probab=98.55  E-value=2.6e-07  Score=79.77  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=56.2

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC-----------------Ceeeeecccchhcccccccc--CCCCC--CC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV-----------------PWVTLLSMDSFYRVHADIIV--PRGGE--NC  107 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~-----------------~~~~~i~~d~~~~~~~~~~~--~~~~~--~~  107 (199)
                      -.-+...+|||.|+|||||||+++.|...++.                 ....++++|+|+........  .....  ..
T Consensus        44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a  123 (395)
T PLN02348         44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA  123 (395)
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence            33456789999999999999999999998852                 34567899998753221100  11111  23


Q ss_pred             chHHHHHHHHHHHHhcCceeecCCc
Q psy9640         108 VAIDLIVQHIHSQLQAGVSVDMPQG  132 (199)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~~~~~~~  132 (199)
                      .+++.+.+++ ..+..+..+..|.+
T Consensus       124 ~dfDll~~~L-~~Lk~G~~I~~PiY  147 (395)
T PLN02348        124 NNFDLMYEQV-KALKEGKAVEKPIY  147 (395)
T ss_pred             ccHHHHHHHH-HHHHCCCcEEeecc
Confidence            4566777777 66666767777765

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.53  E-value=3e-07  Score=74.34  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee--e-ecccchhcc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVT--L-LSMDSFYRV   94 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~--~-i~~d~~~~~   94 (199)
                      -.++.++||+|+||||||||++.|++.+.+..+.  + ++.|+++..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~   76 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD   76 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC
Confidence            4568999999999999999999999998765432  3 778887654

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.52  E-value=3.9e-07  Score=75.74  Aligned_cols=76  Identities=20%  Similarity=0.363  Sum_probs=48.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccc--cCCCCCCC--chHHHHHHHHHHHHhcCceeecCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII--VPRGGENC--VAIDLIVQHIHSQLQAGVSVDMPQ  131 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~--~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~  131 (199)
                      ++||+|+||||||||++.|++.+.+..+.++..|+++.......  ......++  ..++.+.+.+ ..+.....+..|.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l-~~Lk~g~~i~~P~   79 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQL-KALKEGQAIEKPI   79 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHH-HHHHCCCCccccc
Confidence            58999999999999999999999877777788887754211100  00111122  2345555666 5555555566665


Q ss_pred             c
Q psy9640         132 G  132 (199)
Q Consensus       132 ~  132 (199)
                      +
T Consensus        80 y   80 (273)
T cd02026          80 Y   80 (273)
T ss_pred             c
Confidence            4

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.52  E-value=1.9e-07  Score=73.46  Aligned_cols=111  Identities=24%  Similarity=0.300  Sum_probs=64.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe------eeeecccchhccccccc---cC---CCCC--CCchHHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW------VTLLSMDSFYRVHADII---VP---RGGE--NCVAIDLIVQHIHSQL  121 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~------~~~i~~d~~~~~~~~~~---~~---~~~~--~~~~~~~~~~~l~~~~  121 (199)
                      +|||.|+|||||||+++.|...+....      ...++.|+++.......   ..   ....  ...+++.+.+.+ ..+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l-~~L   79 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDL-KAL   79 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHH-HHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHH-HHH
Confidence            699999999999999999999987432      45667777764332111   11   1112  234567777777 566


Q ss_pred             hcCceeecCCceee-----ec-ceecCCeeeeeeEEeccchhHHHHHhhccccce
Q psy9640         122 QAGVSVDMPQGYTY-----EG-KRCAVSKICGVSILRAGETMEQAVHDVCKDIRI  170 (199)
Q Consensus       122 ~~~~~~~~~~~~~~-----~g-~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~  170 (199)
                      ..+..+..|.+ +.     .+ ....  ....|-|.-.+..+...-.+.+-+..|
T Consensus        80 ~~g~~i~~p~y-d~~~~~~~~~~~~~--~~~~ivIvEG~~~l~~~~l~~l~D~~i  131 (194)
T PF00485_consen   80 KNGGSIEIPIY-DFSTGDRDPWIIII--SPSDIVIVEGIYALYDEELRDLFDLKI  131 (194)
T ss_dssp             HTTSCEEEEEE-ETTTTEEEEEEEEE--ES-SEEEEEETTTTSSHCHGGG-SEEE
T ss_pred             hCCCccccccc-ccccccceeeeeec--CCCCEEEEcccceeeeeeecccceeEE
Confidence            66667777764 32     11 1111  124666666666554333334445555

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.50  E-value=4.4e-07  Score=79.00  Aligned_cols=42  Identities=33%  Similarity=0.472  Sum_probs=36.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhcc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRV   94 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~   94 (199)
                      ++.+|||+|+||||||||++.|.+.+...  .++.++.|++|..
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt  254 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT  254 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence            56999999999999999999999888543  5788999999864

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.49  E-value=1.1e-07  Score=75.38  Aligned_cols=35  Identities=26%  Similarity=0.182  Sum_probs=29.0

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++ +++.  .|++++|+||||||||||+|.|++..
T Consensus        15 ~v~n~-i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          15 RVAND-IDME--KKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             eecce-EEEc--CCcEEEEECCCCCChHHHHHHHHHHH
Confidence            45666 6665  47999999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0063|consensus

Probab=98.48  E-value=3e-08  Score=85.71  Aligned_cols=56  Identities=16%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             ceeeccccccccccccccCCCCCC-----eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc
Q psy9640          31 VIKQYVNMVKPAFSTFIAPSMVEP-----FVIGICGGSASGKTTVATKIIESLNVPWVTLLSM   88 (199)
Q Consensus        31 vs~~y~~~~~~~l~~~vsl~i~~g-----~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~   88 (199)
                      ..+.|++.. ..+.+ ..+.|+.|     +++..+|+||-||||++++++|.+.++..+.++.
T Consensus       341 ~~y~Yp~m~-k~~g~-F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~  401 (592)
T KOG0063|consen  341 GRYSYPKMK-KTVGD-FCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV  401 (592)
T ss_pred             heeccCcce-eeeee-EEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc
Confidence            345666652 34455 56666655     6899999999999999999999988877665543

>PRK07429 phosphoribulokinase; Provisional

Probab=98.47  E-value=1.1e-06  Score=74.76  Aligned_cols=80  Identities=21%  Similarity=0.346  Sum_probs=52.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccc--cCCCCCCC--chHHHHHHHHHHHHhcCcee
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII--VPRGGENC--VAIDLIVQHIHSQLQAGVSV  127 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~--~~~~~~~~--~~~~~~~~~l~~~~~~~~~~  127 (199)
                      .+..++||+|+|||||||+++.|++.+++..+.++..|+++.......  ......++  ...+.+.+++ ..+.....+
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l-~~L~~g~~I   84 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHL-KALKTGQPI   84 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHH-HHHHCCCce
Confidence            456799999999999999999999999888778888888753211100  11111122  2345666666 555555556


Q ss_pred             ecCCc
Q psy9640         128 DMPQG  132 (199)
Q Consensus       128 ~~~~~  132 (199)
                      ..|..
T Consensus        85 ~~P~y   89 (327)
T PRK07429         85 LKPIY   89 (327)
T ss_pred             eccee
Confidence            66654

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.45  E-value=1.5e-07  Score=86.83  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKI   74 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L   74 (199)
                      .=|+| |+++|+-|.+++|.|-||||||||++-.
T Consensus       615 nNLkn-i~v~iPLg~~t~VTGVSGSGKSTLIn~t  647 (935)
T COG0178         615 NNLKN-IDVEIPLGVFTCVTGVSGSGKSTLINDT  647 (935)
T ss_pred             cCccc-ceeecccccEEEEEecCCCCHHHhHHHH
Confidence            56899 9999999999999999999999999544

>PRK15494 era GTPase Era; Provisional

Probab=98.41  E-value=2.6e-07  Score=79.05  Aligned_cols=59  Identities=17%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             hcccccccCcccccceeeccccccccccccccCCCCCCe-------EEEEecCCCCcHHHHHHHHHHH
Q psy9640          17 LKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPF-------VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        17 ~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~-------iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.++.....+++++++++|+ ....++.. ++++++.|+       .++|+|.+|+|||||++.|.+.
T Consensus        10 ~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         10 AYREEFKGDTEALAAAVRED-ASTGSTSK-LPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             ccchhhCCccccccccccCC-CCcccccC-CccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            45677788999999999998 44678899 999999999       9999999999999999999864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.41  E-value=1.6e-07  Score=73.46  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.+.+++|+.++|+||+|||||||++.|++.+.+.
T Consensus        18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~   52 (186)
T cd01130          18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD   52 (186)
T ss_pred             HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            67789999999999999999999999999988654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.37  E-value=9.9e-07  Score=72.70  Aligned_cols=76  Identities=20%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcccccccc----------CCC--C--CCCchHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIV----------PRG--G--ENCVAIDLIVQHIHS  119 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~~~~~~----------~~~--~--~~~~~~~~~~~~l~~  119 (199)
                      +++|.|.|||||||+++.+...+..  ..+.++..|++|+. .....          ...  .  .+..+++.+.+++ .
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~-~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l-~   78 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRY-ERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF-R   78 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccC-CchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH-H
Confidence            5899999999999999999987753  35778999999882 22111          011  1  2234567888888 7


Q ss_pred             HHhcCceeecCCce
Q psy9640         120 QLQAGVSVDMPQGY  133 (199)
Q Consensus       120 ~~~~~~~~~~~~~~  133 (199)
                      .+.+...++.|.+.
T Consensus        79 ~L~~g~~i~~p~Y~   92 (277)
T cd02029          79 TYGETGRGRSRYYL   92 (277)
T ss_pred             HHHcCCCcccceee
Confidence            77777778888763

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.37  E-value=1.3e-06  Score=72.44  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhc-ccccccc------CCC----C--CCCchHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYR-VHADIIV------PRG----G--ENCVAIDLIVQH  116 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~-~~~~~~~------~~~----~--~~~~~~~~~~~~  116 (199)
                      +++-+|+|.|.|||||||+++.|+..+...  ...++..|++++ ....+..      .+.    .  .+..+++.+.++
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~   82 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL   82 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence            467799999999999999999998877543  356788899886 3222211      111    1  223456788888


Q ss_pred             HHHHHhcCceeecCCc
Q psy9640         117 IHSQLQAGVSVDMPQG  132 (199)
Q Consensus       117 l~~~~~~~~~~~~~~~  132 (199)
                      + ..+.+......|.+
T Consensus        83 l-~~l~~~~~g~~~~Y   97 (290)
T PRK15453         83 F-REYGETGTGKTRKY   97 (290)
T ss_pred             H-HHHhcCCCcceeec
Confidence            8 55555444455543

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.35  E-value=4.2e-07  Score=70.70  Aligned_cols=29  Identities=24%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +|++++|+|+|||||||+++.|++.+.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~   30 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAK   30 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            68999999999999999999999998763

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.34  E-value=4.5e-07  Score=71.67  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=26.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++|++++|+||||||||||+++|++.+.
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            36899999999999999999999999864

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.34  E-value=3.7e-07  Score=71.43  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=24.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      |++++|+||||||||||+++|++.+.+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            789999999999999999999887764

>TIGR01091 upp uracil phosphoribosyltransferase

Probab=98.33  E-value=1.4e-06  Score=69.59  Aligned_cols=74  Identities=36%  Similarity=0.510  Sum_probs=63.8

Q ss_pred             CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ...++.|.+. +.+..+.+.+.--|+|.|++..|...+.+.+|.+++++|.++||.++.+++.||.++|++++++
T Consensus        50 ~~~v~tp~g~-~~~~~~~~~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~  123 (207)
T TIGR01091        50 EVEVETPLGE-TEGGRILGKKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDER  123 (207)
T ss_pred             eEEEECCCCc-EEEeEecCCcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCC
Confidence            3456777773 4566677667888999999999999999999999999999999999999999999999988764

that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.33  E-value=1.7e-06  Score=68.02  Aligned_cols=65  Identities=23%  Similarity=0.421  Sum_probs=44.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCC-C-----CCCCchHHHHHHHHHHHHhc
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR-G-----GENCVAIDLIVQHIHSQLQA  123 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~~~~  123 (199)
                      +|+|.|+|||||||+++.|+..+.  ...++++|+++.......... .     .....+.+.+.+.+ ..+..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L-~~l~~   71 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTL-DYWRE   71 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHH-HHHHc
Confidence            589999999999999999999874  355789999987655433221 1     12234557777777 44433

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.31  E-value=9.7e-07  Score=79.06  Aligned_cols=55  Identities=20%  Similarity=0.330  Sum_probs=44.5

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcccccccc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV  100 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~  100 (199)
                      ..++| +.+.. ++.+++|.|||||||||+++.|+..++   ..++..+.+|+.......
T Consensus       273 RLIDN-~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~a~~~l  327 (512)
T PRK13477        273 RLIDN-VFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAVTWLVL  327 (512)
T ss_pred             EEEee-eEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHHHHHHH
Confidence            67899 88877 889999999999999999999999885   345566777776544333

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.29  E-value=8.2e-07  Score=78.14  Aligned_cols=56  Identities=16%  Similarity=0.108  Sum_probs=46.9

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +-++.++++..|... ..+++. ++ .+.+|++++|+|+||||||||+++|++...+..
T Consensus       138 ~~~~r~~v~~~l~TG-i~aID~-L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~  193 (450)
T PRK06002        138 PAMTRARVETGLRTG-VRVIDI-FT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT  193 (450)
T ss_pred             CCeEeecceEEcCCC-cEEeee-ec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence            357889999999654 478888 64 899999999999999999999999988766544

>PRK06696 uridine kinase; Validated

Probab=98.26  E-value=9.5e-07  Score=71.10  Aligned_cols=46  Identities=33%  Similarity=0.420  Sum_probs=36.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhccc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVH   95 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~~   95 (199)
                      .-....+|+|.|+||||||||++.|+..+...  .+-.+++|+|+...
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~   65 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR   65 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH
Confidence            34567899999999999999999999988533  34446789998754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.26  E-value=7.4e-07  Score=70.97  Aligned_cols=37  Identities=22%  Similarity=0.006  Sum_probs=33.7

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.++ +++++.+|++++|.|||||||||+++.+++..
T Consensus        17 ~v~~~-~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          17 FIPND-IYLTRGSSRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             EEEee-eEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            57888 99999999999999999999999999987643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.24  E-value=7.1e-07  Score=70.70  Aligned_cols=30  Identities=20%  Similarity=0.129  Sum_probs=26.8

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++++.+|++++|+|||||||||+++.|++.
T Consensus        23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          23 DINLGSGRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence            566778999999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.24  E-value=1.4e-06  Score=56.10  Aligned_cols=34  Identities=26%  Similarity=0.135  Sum_probs=26.1

Q ss_pred             ccCCCC-CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          47 IAPSMV-EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        47 vsl~i~-~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..+++. .|.+..|.|+|||||||++..+.-.+.+
T Consensus        15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            344554 3569999999999999999888765543

>PRK00129 upp uracil phosphoribosyltransferase; Reviewed

Probab=98.22  E-value=3.1e-06  Score=67.65  Aligned_cols=74  Identities=38%  Similarity=0.572  Sum_probs=64.5

Q ss_pred             CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ...++.|.+ .+.|..+.+.+---|+|.|++..|...+.+.+|.+.+++|.++||.++.+++.||.++|.+++++
T Consensus        52 ~~~v~tp~g-~~~g~~~~~~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~  125 (209)
T PRK00129         52 EVEIETPLG-KTTGKRIAGKKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDER  125 (209)
T ss_pred             EEEEECCCC-cEEEEEecCCeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCC
Confidence            345677777 56777777666778999999999999999999999999999999988999999999999988764

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.21  E-value=1.3e-06  Score=67.63  Aligned_cols=27  Identities=26%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      |++++|+|||||||||+++.|++.+..
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            578999999999999999999988753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0065|consensus

Probab=98.21  E-value=3.7e-06  Score=81.27  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=36.4

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+++++ ++.-+++|+.+.+.||.|||||||++.|+|.+.
T Consensus       128 ~~il~~-~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~  166 (1391)
T KOG0065|consen  128 IQILKD-ISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD  166 (1391)
T ss_pred             ceeecC-cceeEcCCceEEEecCCCCchHHHHHHHhCCCc
Confidence            368999 999999999999999999999999999999774

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.20  E-value=1.3e-06  Score=63.01  Aligned_cols=32  Identities=47%  Similarity=0.711  Sum_probs=26.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      +|+|+|+|||||||+++.|+..++..   ++..|.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~---~i~~d~   32 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFP---VISMDD   32 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCE---EEEEHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCe---EEEecc
Confidence            58999999999999999999987533   344555

...

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.17  E-value=2.4e-06  Score=74.82  Aligned_cols=43  Identities=28%  Similarity=0.336  Sum_probs=35.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc----CCCeeeeecccchhc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSFYR   93 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l----~~~~~~~i~~d~~~~   93 (199)
                      +.+|.+++++||||+||||+++.|++.+    ++..++++..|.+..
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri  234 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI  234 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence            4789999999999999999999999864    446677777777643

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.17  E-value=2.7e-06  Score=75.73  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=39.7

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccch
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSF   91 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~   91 (199)
                      ++++ .++.+.+|.+++++|||||||||++.+|++.+.    ...++++..|.+
T Consensus       245 ~~~~-~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~  297 (484)
T PRK06995        245 VLDS-EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY  297 (484)
T ss_pred             hccC-ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence            4555 666788899999999999999999999998773    235777887765

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.14  E-value=1.6e-06  Score=67.12  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=23.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |.+++|+||||||||||++.|++.+.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            67999999999999999999998653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK08233 hypothetical protein; Provisional

Probab=98.13  E-value=3.3e-06  Score=65.17  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=29.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY   92 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~   92 (199)
                      ++.+|+|.|++||||||+++.|+..+...  .++..|.++
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~--~~~~~d~~~   39 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNS--KALYFDRYD   39 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCC--ceEEECCEE
Confidence            46899999999999999999999988533  334455443

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.12  E-value=1.5e-06  Score=76.31  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=36.7

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..++++ + +++.+|++++|+|+||||||||+++|++...+.
T Consensus       143 i~aID~-l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~d  182 (434)
T PRK07196        143 VNAING-L-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD  182 (434)
T ss_pred             eeeccc-e-EeEecceEEEEECCCCCCccHHHHHHhcccCCC
Confidence            478999 8 999999999999999999999999999987655

>PRK07667 uridine kinase; Provisional

Probab=98.09  E-value=1.6e-05  Score=62.63  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRV   94 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~   94 (199)
                      ....+|||.|++||||||+++.|...+..  ..+.+++.|+++..
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            44579999999999999999999987743  24567888887754

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.08  E-value=3.6e-06  Score=66.46  Aligned_cols=38  Identities=32%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSM   88 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~   88 (199)
                      -.+|.+++|+|+|||||||+++.|.+.+.+...+.+..
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l   58 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL   58 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            36899999999999999999999999875443333333

>PRK06547 hypothetical protein; Provisional

Probab=98.08  E-value=4.8e-06  Score=64.56  Aligned_cols=40  Identities=30%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR   93 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~   93 (199)
                      -....+|+|.|+|||||||+++.|+..++   ..+++.|+++.
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~   51 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYP   51 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceec
Confidence            45667999999999999999999998765   33556777664

>COG4240 Predicted kinase [General function prediction only]

Probab=98.07  E-value=1.6e-05  Score=63.95  Aligned_cols=83  Identities=28%  Similarity=0.439  Sum_probs=56.5

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc---CCCeeeeecccchhcccccc----------ccCCCCCCCchHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL---NVPWVTLLSMDSFYRVHADI----------IVPRGGENCVAIDLIVQH  116 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l---~~~~~~~i~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  116 (199)
                      .-..+.+++|.||.||||||+.-.|-..+   +....+.++.|++|....+.          ...|+.....+.......
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV  125 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV  125 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence            44568999999999999999998876655   22467889999998766542          123444556677777666


Q ss_pred             HHHHHhcCceeecCCc
Q psy9640         117 IHSQLQAGVSVDMPQG  132 (199)
Q Consensus       117 l~~~~~~~~~~~~~~~  132 (199)
                      ++........+.+|.+
T Consensus       126 Lnai~~g~~~V~lPrf  141 (300)
T COG4240         126 LNAIARGGPTVPLPRF  141 (300)
T ss_pred             HHHHhcCCCCcccccc
Confidence            6444443444556654

>PRK07261 topology modulation protein; Provisional

Probab=98.05  E-value=4.9e-06  Score=64.35  Aligned_cols=26  Identities=46%  Similarity=0.617  Sum_probs=23.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++|+|+||||||||++.|+..++.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~   27 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCP   27 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            68999999999999999999887654

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.04  E-value=4.2e-06  Score=64.69  Aligned_cols=31  Identities=39%  Similarity=0.491  Sum_probs=27.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+|.++.++|++||||||+++.|+..+...
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~   34 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLK   34 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            4688999999999999999999999888643

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=8.4e-06  Score=70.45  Aligned_cols=50  Identities=28%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc----CCCeeeeecccch
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL----NVPWVTLLSMDSF   91 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l----~~~~~~~i~~d~~   91 (199)
                      +++++ .++.+.+|.+++++||+|+||||++..|++.+    +...++++..|.+
T Consensus       125 ~~~~~-~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        125 PVLDS-EDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             hhhcC-CCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            45666 67788999999999999999999999999864    2246777777766

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.00  E-value=3.7e-06  Score=71.02  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=31.4

Q ss_pred             cccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          46 FIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        46 ~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      |+++.++.|..++|+|++|||||||++.|++.+.+.
T Consensus       136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~  171 (308)
T TIGR02788       136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD  171 (308)
T ss_pred             HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc
Confidence            355678899999999999999999999999988654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.00  E-value=5.2e-06  Score=66.63  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=30.5

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .+.++ ++++..+ ++++|+|||||||||+++.+++.
T Consensus        19 ~v~n~-~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~   53 (216)
T cd03284          19 FVPND-TELDPER-QILLITGPNMAGKSTYLRQVALI   53 (216)
T ss_pred             eEeee-EEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence            46678 8888876 99999999999999999999753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.99  E-value=5e-06  Score=67.09  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=32.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .+.++ +++.+.+|++++|.||||+||||+++.+++
T Consensus        19 ~v~n~-i~~~~~~g~~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          19 FVPND-IHLSAEGGYCQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             EEEEe-EEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence            56788 999999999999999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.98  E-value=1.8e-05  Score=58.61  Aligned_cols=35  Identities=34%  Similarity=0.635  Sum_probs=27.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR   93 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~   93 (199)
                      ++.++|++||||||+++.|+..++   .-.++.|.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~   35 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRR   35 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHH
Confidence            578999999999999999998776   33455665544

...

>PRK08149 ATP synthase SpaL; Validated

Probab=97.97  E-value=4.4e-06  Score=73.31  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=36.5

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..++++ + +.+.+|++++|+|+||||||||+++|++...+..
T Consensus       139 i~aid~-l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv  179 (428)
T PRK08149        139 VRAIDG-L-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV  179 (428)
T ss_pred             cEEEee-e-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence            368999 8 9999999999999999999999999998776553

>TIGR01069 mutS2 MutS2 family protein

Probab=97.97  E-value=1.5e-06  Score=81.67  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             cCCCCCC-eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          48 APSMVEP-FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        48 sl~i~~g-~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++.+..+ .+++|+||||+||||+++.+++.
T Consensus       315 di~l~~~~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       315 TLNLKFEKRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             eeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence            6677666 89999999999999999999886

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.97  E-value=5.6e-06  Score=68.63  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             CcccccceeeccccccccccccccCCCC-------CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchh
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMV-------EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY   92 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~-------~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~   92 (199)
                      .+.++++++.+......++++ +++.+.       +|++++++|++|+||||+++.|++.+..  ..++++..|.++
T Consensus        40 ~i~f~~~~~~~~~vl~~v~~~-l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         40 KVKFENATMITEEVIEYILED-MSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             eEEecCCCccccHHHHHHhcc-cEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            355566665553322345666 666665       4589999999999999999999987743  467778877654

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=1.1e-05  Score=75.06  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=40.7

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchh
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY   92 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~   92 (199)
                      +++++ .++.+++|.+++++||||+||||++.+|++.+.    ...+.++..|.+.
T Consensus       173 ~il~~-~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        173 PVLRD-EDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             hhccC-CCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            35566 777788899999999999999999999998772    2356777777654

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.95  E-value=8.9e-06  Score=62.76  Aligned_cols=29  Identities=31%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+|++++|+|++||||||+++.|++.+..
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~   30 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLRE   30 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999998854

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.95  E-value=7.4e-06  Score=61.08  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +++|+||||||||||++.|+..+..
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCc
Confidence            4789999999999999999987654

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK08118 topology modulation protein; Reviewed

Probab=97.94  E-value=8.8e-06  Score=62.73  Aligned_cols=26  Identities=42%  Similarity=0.634  Sum_probs=23.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .|.|+|++|||||||++.|+..++.+
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~   28 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIP   28 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            58999999999999999999887654

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=97.94  E-value=7.1e-06  Score=72.12  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=45.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      -++.+.++..|... ..++++ + +.+.+|++++|+|+||+|||||++.|++...+..
T Consensus       129 ~~~r~~v~~~l~tG-i~aID~-l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~  183 (433)
T PRK07594        129 AMVRQPITQPLMTG-IRAIDS-V-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS  183 (433)
T ss_pred             ceeccCHhheeCCC-ceeeee-e-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCE
Confidence            46667777777543 478999 7 9999999999999999999999999998776654

>KOG3308|consensus

Probab=97.93  E-value=1.2e-05  Score=63.21  Aligned_cols=48  Identities=31%  Similarity=0.471  Sum_probs=41.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG  103 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~  103 (199)
                      --+|||.|.|-||||||++.|...+....  +|++|+||+...+....+.
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~--lIhqDDFyKp~~Ei~v~~~   51 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPGCS--LIHQDDFYKPENEIEVDYN   51 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccCCe--eeccccccCchhhhhcccC
Confidence            35899999999999999999999986554  7999999998887766554

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.93  E-value=7.4e-06  Score=66.03  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=31.4

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      .+.++ ++++..++++++|.|||||||||+++.++
T Consensus        18 ~v~~~-~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          18 FIPND-VTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             eEEee-EEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            56788 99999999999999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=97.93  E-value=8.8e-06  Score=69.13  Aligned_cols=50  Identities=18%  Similarity=0.145  Sum_probs=40.6

Q ss_pred             cceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          30 GVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        30 nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .++..|... ..+++. + +.+.+|++++|+|+||+|||||+++|++...+..
T Consensus        48 ~~~~~l~tG-i~aiD~-l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~   97 (326)
T cd01136          48 PIDEVLPTG-VRAIDG-L-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV   97 (326)
T ss_pred             cceeEcCCC-cEEEee-e-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence            344445432 468899 7 9999999999999999999999999998877653

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK06217 hypothetical protein; Validated

Probab=97.92  E-value=2.2e-05  Score=61.13  Aligned_cols=36  Identities=36%  Similarity=0.649  Sum_probs=28.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR   93 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~   93 (199)
                      ..|.|+|.|||||||+++.|+..++.+   .+..|.++.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~---~~~~D~~~~   37 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIP---HLDTDDYFW   37 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCc---EEEcCceee
Confidence            358999999999999999999988754   345555543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.92  E-value=1.3e-05  Score=59.48  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=28.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++|.++++.|+.||||||+++.++..++..
T Consensus        18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             hCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            46789999999999999999999999988643

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.91  E-value=9.6e-06  Score=53.25  Aligned_cols=23  Identities=61%  Similarity=0.897  Sum_probs=21.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +++|.|++||||||+++.|...+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999886

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.89  E-value=1.1e-05  Score=72.39  Aligned_cols=51  Identities=14%  Similarity=0.058  Sum_probs=44.4

Q ss_pred             cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.|++..|...  .++++ +++.+..|+.++|+|++|||||||++.|.+.+.+.
T Consensus       187 ~~d~~~v~Gq~--~~~~a-l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~  237 (506)
T PRK09862        187 QHDLSDVIGQE--QGKRG-LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDL  237 (506)
T ss_pred             ccCeEEEECcH--HHHhh-hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCC
Confidence            45787777654  68888 99999999999999999999999999999988664

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.88  E-value=1.4e-05  Score=67.21  Aligned_cols=48  Identities=23%  Similarity=0.340  Sum_probs=39.6

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeeccc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMD   89 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d   89 (199)
                      .++++ +++...++.+++|+|++|||||||+..++..+..  ..+.++..|
T Consensus        22 ~~~~~-~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        22 QLLDR-IMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             HHHHh-CCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            57889 9999999999999999999999999999887643  245555555

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.88  E-value=1e-05  Score=81.14  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=38.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ++..+++..+...  +.|++ +++++.+|++++|+|+||||||||+..++
T Consensus       936 l~~~~i~i~~~~~--~~lk~-isl~i~~gei~~itG~nGsGKStL~~~~L  982 (1809)
T PRK00635        936 PVPADITIKNAYQ--HNLKH-IDLSLPRNALTAVTGPSASGKHSLVFDIL  982 (1809)
T ss_pred             cccceEEEecccc--ccccc-eeEEecCCcEEEEECCCCCChhHHHHHHH
Confidence            4466777776433  56899 99999999999999999999999887763

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.88  E-value=1.2e-05  Score=70.91  Aligned_cols=41  Identities=22%  Similarity=0.286  Sum_probs=36.7

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..++++ + +.+.+|++++|+|+||+|||||+++|++...+..
T Consensus       146 ~~vid~-l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~  186 (438)
T PRK07721        146 VRAIDS-L-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL  186 (438)
T ss_pred             hhhhhe-e-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence            368899 8 9999999999999999999999999998876643

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.87  E-value=1.4e-05  Score=57.53  Aligned_cols=29  Identities=41%  Similarity=0.464  Sum_probs=25.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++..+.|+||+||||||+++.|+..+...
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            36789999999999999999999988765

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.87  E-value=2e-05  Score=66.88  Aligned_cols=41  Identities=34%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccch
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSF   91 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~   91 (199)
                      -.+|++++++|||||||||++..|++.+...  .+.++..|.+
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            3579999999999999999999999988643  3444555543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.86  E-value=1.7e-05  Score=61.58  Aligned_cols=36  Identities=28%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSM   88 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~   88 (199)
                      ...+++|+|+||||||||++.|...+...  .++.+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~   42 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   42 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            34589999999999999999999988642  3455543

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.86  E-value=1.6e-05  Score=61.61  Aligned_cols=28  Identities=39%  Similarity=0.496  Sum_probs=24.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +..+++|+|++||||||+++.|+..++.
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~   29 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGF   29 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3468999999999999999999976653

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.85  E-value=1.6e-05  Score=61.89  Aligned_cols=33  Identities=33%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +....+|.+++|+|++||||||+++.|.+.+..
T Consensus        12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~   44 (184)
T TIGR00455        12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKLES   44 (184)
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345678999999999999999999999998753

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.84  E-value=2.6e-05  Score=65.06  Aligned_cols=42  Identities=26%  Similarity=0.370  Sum_probs=34.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchh
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFY   92 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~   92 (199)
                      ..++.+++|+||+|+||||++..|+..+.    ...++++..|.++
T Consensus       191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            35788999999999999999999998762    3567777777653

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.83  E-value=2e-05  Score=69.30  Aligned_cols=41  Identities=24%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..++++ + +.+.+|++++|.|+||+|||||+++|++...+..
T Consensus       133 ~~~id~-l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~  173 (422)
T TIGR02546       133 VRAIDG-L-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV  173 (422)
T ss_pred             ceeehh-h-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence            468999 8 9999999999999999999999999998776554

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.81  E-value=2.2e-05  Score=69.38  Aligned_cols=40  Identities=23%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+++. + +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus       151 i~~iD~-l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~  190 (440)
T TIGR01026       151 VRSIDG-L-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD  190 (440)
T ss_pred             eeeeee-c-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            468888 7 999999999999999999999999999887654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.81  E-value=1.1e-05  Score=70.80  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+++. + +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus       150 i~aID~-l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        150 VRAINA-M-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             ceeecc-e-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            357777 5 999999999999999999999999999876554

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.80  E-value=1.4e-05  Score=67.98  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             ccCCCCC--CeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          47 IAPSMVE--PFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        47 vsl~i~~--g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++..+++  +..++|+|+||||||||++.|++.++.+.
T Consensus       153 i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       153 IPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             CCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            6777778  89999999999999999999999887654

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.80  E-value=2.1e-05  Score=62.57  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=23.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ...+.++.|+||||||||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            458899999999999999999998754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.80  E-value=2.1e-05  Score=62.24  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++.|+||+||||||+++.|++.+...
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~   28 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKN   28 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            68999999999999999999888643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.80  E-value=1.7e-05  Score=60.81  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.+++++|+||+|||||++.|.+..
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4899999999999999999998754

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.78  E-value=1.5e-05  Score=70.28  Aligned_cols=40  Identities=10%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+++. + +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus       156 i~aID~-l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        156 IRSING-L-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             eeeecc-e-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            478888 7 999999999999999999999999999876654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.78  E-value=2.6e-05  Score=60.77  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=23.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.|+|+|||||||+++.|+..++.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~h   28 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPH   28 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            588999999999999999999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
1xrj_A	261	Rapid Structure Determination Of Human Uridine-Cyti		2e-19
1udw_A	252	Crystal Structure Of Human Uridine-cytidine Kinase		7e-19
2jeo_A	245	Crystal Structure Of Human Uridine-Cytidine Kinase		4e-15
1upu_D	224	Structure Of The Uracil Phosphoribosyltransferase,		5e-14
1bd3_D	243	Structure Of The Apo Uracil Phosphoribosyltransfera		5e-14
3asy_A	211	Ligand-Free Structure Of Uridine Kinase From Thermu		1e-13
3asy_A	211	Ligand-Free Structure Of Uridine Kinase From Thermu		2e-07

>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine Kinase 2 Using A Conventional Laboratory X-Ray Source And A Single Samarium Derivative Length = 261

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 69/145 (47%), Gaps = 46/145 (31%)
Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDAD RL+RR+ RDI  RGRDLE ++ QY+  VKPAF  F  P+          
Sbjct: 151 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPT---------- 200
Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 201 --------------------------------KKYADVIIPRGADNLVAINLIVQHIQDI 228
Query: 121 LQAGVSVDMP----QGYTYEGKRCA 141
           L  G S         GYT   KR A
Sbjct: 229 LNGGPSKRQTNGCLNGYTPSRKRQA 253

>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2 Complexed With A Feedback-inhibitor, Ctp Length = 252

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 64/132 (48%), Gaps = 42/132 (31%)
Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDAD RL+RR+ RDI  RGRDLE ++ QY+  VKPAF  F  P+          
Sbjct: 153 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPT---------- 202
Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 203 --------------------------------KKYADVIIPRGADNLVAINLIVQHIQDI 230
Query: 121 LQAGVSVDMPQG 132
           L  G S     G
Sbjct: 231 LNGGPSKRQTNG 242

>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 Length = 245

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 43/125 (34%)
Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +++FVDTD+DVRL+RR+ RD+  RGRDLE ++ QY   VKPAF  F  P+          
Sbjct: 156 LRLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPT---------- 204
Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 205 --------------------------------KKYADVIIPRGVDNMVAINLIVQHIQDI 232
Query: 121 LQAGV 125
           L   +
Sbjct: 233 LNGDI 237

>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant C128v, Bound To Product Uridine-1-Monophosphate (Ump) Length = 224

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 126 SVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPE 185
            V  P   +Y G     SKICGVSI+RAGE+ME  +  VC+ +RIGKILIQ ++ T EP+
Sbjct: 67  EVTTPLDVSYHGV-SFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPK 125
Query: 186 LYYLRLPKDIKD 197
           L Y +LP DI++
Sbjct: 126 LIYEKLPADIRE 137

>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2 Mutant C128v Length = 243

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 126 SVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPE 185
            V  P   +Y G     SKICGVSI+RAGE+ME  +  VC+ +RIGKILIQ ++ T EP+
Sbjct: 86  EVTTPLDVSYHGV-SFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPK 144
Query: 186 LYYLRLPKDIKD 197
           L Y +LP DI++
Sbjct: 145 LIYEKLPADIRE 156

>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus Thermophilus Hb8 Length = 211

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 42/112 (37%)
Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +KVFVD DAD R  RRLKRD+L RGR LEGV+ QY+  VKP    F+ P+          
Sbjct: 127 LKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPT---------- 176
Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDL 112
                                           + +AD+IVPRGG+N VA+++
Sbjct: 177 --------------------------------KRYADVIVPRGGQNPVALEM 196

>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus Thermophilus Hb8 Length = 211

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 50  SMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPR----GGE 105
           S  +PFVIGI GG+ASGKTT+A  +  +L    V LL MD +Y+    + +        +
Sbjct: 2   SAPKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYD 60
Query: 106 NCVAIDLIVQHIHSQ-LQAGVSVDMP----QGYTYEGKRCAV 142
           +  A DL +   H+Q L  G+ V+MP    + YT   +R  V
Sbjct: 61  HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	7e-32
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	8e-21
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	7e-29
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	3e-19
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	2e-27
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	2e-18
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	4e-19
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	2e-12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	3e-17
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	2e-08
1bd3_D	243	Uprtase, uracil phosphoribosyltransferase; glycosy	2e-14
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	7e-13
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	1e-10
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	1e-11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	2e-07
1v9s_A	208	Uracil phosphoribosyltransferase; pyrimidine salva	4e-10
1i5e_A	209	Uracil phosphoribosyltransferase; salvage pathway;	5e-10
1o5o_A	221	Uracil phosphoribosyltransferase; TM0721, structur	5e-10
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	1e-09
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	7e-07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	1e-09
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	7e-08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	1e-08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	2e-04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	8e-06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	2e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	8e-04

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score =  113 bits (285), Expect = 7e-32
 Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 42/122 (34%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +KVFVD DAD R  RRLKRD+L RGR LEGV+ QY+  VKP    F+ P           
Sbjct: 127 LKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEP----------- 175

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+IVPRGG+N VA++++     ++
Sbjct: 176 -------------------------------TKRYADVIVPRGGQNPVALEMLAAKALAR 204

Query: 121 LQ 122
           L 
Sbjct: 205 LA 206

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 85.0 bits (211), Expect = 8e-21
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADI-IVPRGGEN----- 106
           +PFVIGI GG+ASGKTT+A  +  +L    V LL MD +Y+    + +  R   N     
Sbjct: 5   KPFVIGIAGGTASGKTTLAQALARTLG-ERVALLPMDHYYKDLGHLPLEERLRVNYDHPD 63

Query: 107 CVAIDLIVQHIHSQLQAGVSVDMPQGYTYE-GKR 139
              + L ++H    L  G+ V+MP  Y +    R
Sbjct: 64  AFDLALYLEHAQ-ALLRGLPVEMPV-YDFRAYTR 95

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score =  106 bits (267), Expect = 7e-29
 Identities = 53/142 (37%), Positives = 66/142 (46%), Gaps = 46/142 (32%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDAD RL+RR+ RDI  RGRDLE ++ QY+  VKPAF  F  P           
Sbjct: 153 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP----------- 201

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 202 -------------------------------TKKYADVIIPRGADNLVAINLIVQHIQDI 230

Query: 121 LQAG----VSVDMPQGYTYEGK 138
           L  G     +     GYT   K
Sbjct: 231 LNGGPSKRQTNGCLNGYTPSRK 252

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 81.8 bits (202), Expect = 3e-19
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)

Query: 42  AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSMDSFYRV 94
                  P+  EPF+IG+ GG+ASGK++V  KI++ L           V +LS DSFYRV
Sbjct: 10  TLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69

Query: 95  HADIIVPRGGENCV------AID--LIVQHIHSQLQAGVSVDMPQGYTYE-GKRC 140
                  +  +         A D  LI++ +  ++  G +V +P  Y +    R 
Sbjct: 70  LTSEQKAKALKGQFNFDHPDAFDNELILKTLK-EITEGKTVQIPV-YDFVSHSRK 122

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score =  102 bits (257), Expect = 2e-27
 Identities = 45/122 (36%), Positives = 60/122 (49%), Gaps = 43/122 (35%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +++FVDTD+DVRL+RR+ RD+  RGRDLE ++ QY   VKPAF  F  P           
Sbjct: 156 LRLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLP----------- 203

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 204 -------------------------------TKKYADVIIPRGVDNMVAINLIVQHIQDI 232

Query: 121 LQ 122
           L 
Sbjct: 233 LN 234

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 79.1 bits (195), Expect = 2e-18
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)

Query: 47  IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW-------VTLLSMDSFYRVHADII 99
           +    + PF+IG+ GG+ASGK+TV  KI+E L           V +LS D FY+V     
Sbjct: 18  LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQ 77

Query: 100 VPRGGEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYE-GKRC 140
             +  +             DL+ + +   +  G +V++P  Y +    R 
Sbjct: 78  KAKALKGQYNFDHPDAFDNDLMHRTLK-NIVEGKTVEVPT-YDFVTHSRL 125

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 80.1 bits (198), Expect = 4e-19
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNVPW--VTLLSMDSFYRVHADIIVPRGGE----- 105
              V+GI G S SGKTT+A ++ ++L      V +  MD      A        E     
Sbjct: 21  GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYY 80

Query: 106 -NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYE 136
                ++ +   +  QL+A   + +P  Y +E
Sbjct: 81  YLQWDVEWLTHQLFRQLKASHQLTLPF-YDHE 111

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPS 50
             V++D   ++R AR   +      ++++  I +Y    +  +     P 
Sbjct: 146 FVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETEEPI 190

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 75.7 bits (186), Expect = 3e-17
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 44  STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
           S+ + P   + F+IGI G + SGKTT+A  + + L  P  +++S D F++  ++I   + 
Sbjct: 11  SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL--PNCSVISQDDFFKPESEIETDKN 68

Query: 104 GE------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETM 157
           G         + ++ ++  I           +        +   +  I G  +       
Sbjct: 69  GFLQYDVLEALNMEKMMSAIS-CWMESARHSVVSTDQESAEEIPILIIEGFLLFNYKPLD 127

Query: 158 EQ--------AVHDVCKDIRIGKI 173
                       ++ CK  R  ++
Sbjct: 128 TIWNRSYFLTIPYEECKRRRSTRV 151

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 8/81 (9%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
              F+    +    RR  R               +   V P +  +        + +   
Sbjct: 132 RSYFLTIPYEECKRRRSTRV-----YQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYL 186

Query: 61  GGSASGK---TTVATKIIESL 78
            G+ S +     V   +I+ L
Sbjct: 187 DGTKSEEDLFLQVYEDLIQEL 207

>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Length = 243

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
             V  P   +Y G     SKICGVSI+RAGE+ME  +  VC+ +RIGKILIQ ++ T EP
Sbjct: 85  KEVTTPLDVSYHGVSFY-SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEP 143

Query: 185 ELYYLRLPKDIKDYK 199
           +L Y +LP DI++  
Sbjct: 144 KLIYEKLPADIRERW 158

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 64.7 bits (157), Expect = 7e-13
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 17/136 (12%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +K+ V    ++   +++ RD   RG   E V    +     A+   I P   +  +    
Sbjct: 150 LKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINFQR 208

Query: 61  GGSASGKTTVATKIIESL-------------NVPWVTLLSM--DSFYRVHADIIVPRGGE 105
                       + I +               + +  L SM   S+      I+VP G +
Sbjct: 209 VPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWMSRANSIVVP-GNK 267

Query: 106 NCVAIDLIVQHIHSQL 121
             +A+ LI+  +  ++
Sbjct: 268 LDLAMQLILTPLIDRV 283

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 52 VEPFVIGICGGSASGKTTVA---TKIIESLNVPWVTLLSMDSFYR 93
           +  +I + G S +G +TV     +I     V  V  +  D+F+R
Sbjct: 3  KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAV-SIEGDAFHR 46

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 54 PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVHAD 97
            ++ + G   SGK+T++  +  +L+       ++ MD F+  +  
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL 67

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSM 51
           + + ++       AR ++R  L  G + +  + +         +  I  + 
Sbjct: 150 VSIRLEVPMADLEARLVQRW-LDHGLNHDAAVARAQGNDLAN-ARAIEAAR 198

>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1 Length = 208

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
            +V+ P       K  +  K+  V+ILRAG  M + +  +    R+G I +  +  +  P
Sbjct: 52  TTVETPIAPAR-VKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNP 110

Query: 185 ELYYLRLPKDIKD 197
             YY++LP DI +
Sbjct: 111 VQYYIKLPPDIAE 123

>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Length = 209

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
           V ++ P          A  K+  + ILRAG  M   +  +    ++G I +  +  T +P
Sbjct: 53  VEIETPVSKARAKVI-AGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKP 111

Query: 185 ELYYLRLPKDIKDYK 199
             YY++LP D+++  
Sbjct: 112 VEYYVKLPSDVEERD 126

>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Length = 221

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
           V V+ P   T   +      I  V ILRAG  M   + ++  +  +G I I  +  T + 
Sbjct: 65  VEVETPITKTIGYRI-NDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQA 123

Query: 185 ELYYLRLPKDIKDYK 199
             YY +LP    D +
Sbjct: 124 VEYYAKLPPLNDDKE 138

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYR 93
            P++I I G  A GK+T A  +   L+       V L++ D F  
Sbjct: 79  IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 47.2 bits (112), Expect = 7e-07
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 35/114 (30%)

Query: 1   MKVFVDTDADVRLARRLKRDILARG---RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVI 57
             ++VD   D+     + R +  R     D +     Y  + K                 
Sbjct: 217 FSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEA-------------- 262

Query: 58  GICGGSASGKTTVATKIIESLNVPWVTLLSMDSF---YRVHADIIVPRGGENCV 108
                        A  + + +N       ++       R  A +I+ +   + V
Sbjct: 263 ----------IKTAMTLWKEINWL-----NLKQNILPTRERASLILTKSANHAV 301

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 49  PSMVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYR 93
           P    PF+IG+ G  A GK+T A  +   L      P V L++ D F  
Sbjct: 85  PDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLY 133

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 12/127 (9%), Positives = 26/127 (20%), Gaps = 61/127 (48%)

Query: 1   MKVFVDTDADVRLARRLKRDILAR---GRDLEGVIKQYVNM----------------VKP 41
             ++VD   +      + R +  R     D E     Y                    +P
Sbjct: 220 FSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRP 279

Query: 42  AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP 101
                I P+                                          R  A +++ 
Sbjct: 280 NLVENILPT------------------------------------------RPRATLVLR 297

Query: 102 RGGENCV 108
           +  ++ +
Sbjct: 298 KDADHSI 304

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHAD 97
            P++IGI G  A GK+T +  +   L+     P V +++ D F   +A 
Sbjct: 91  VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAK 139

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 13/108 (12%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           ++VFV    D  L    +  ++ +   ++ V+  +    K   S F            + 
Sbjct: 219 LQVFVSDFFDFSLFVDAQAQVIQKWY-IDRVLSFWRTTFKDPHSYFHY----------LT 267

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
             S +     A  +   +N   +    +    +  A +I+ +  ++ +
Sbjct: 268 QMSETEVAAFAKHVWNEINKVNLMENILPY--KNRAQLILEKAADHSI 313

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 51  MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE----- 105
           M  P +I + G  A+GKTT++  +   L +P   LLS D+F  V  D +     E     
Sbjct: 2   MQTPALIIVTGHPATGKTTLSQALATGLRLP---LLSKDAFKEVMFDGLGWSDREWSRRV 58

Query: 106 NCVAIDLIVQHIHSQLQAGVSV 127
              AI ++     + LQ+G S+
Sbjct: 59  GATAIMMLYHTAATILQSGQSL 80

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 31 VIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL-----NVPWVTL 85
          V+   +  +      +       P  I   G   SGK+  + +I   L         +  
Sbjct: 8  VLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGY 67

Query: 86 LSMDSFYRVHAD 97
           S+D FY  H D
Sbjct: 68 ASIDDFYLTHED 79

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE----NCV 108
              ++ + G   SGK+T+A  +     VP V   S D +  +    I P   +    N +
Sbjct: 8   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM 67

Query: 109 AIDLIVQHIHSQLQAGVSV 127
            + +         + G  V
Sbjct: 68  IMQIAADVAGRYAKEGYFV 86

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 56  VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
           +I + GGS++GK+ +   +   L  PW+    +DS        +    G      D  V 
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLA-FGVDSLIEAMPLKMQSAEGGIEFDADGGVS 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 35/222 (15%), Positives = 61/222 (27%), Gaps = 75/222 (33%)

Query: 2   KVFVDT--DADVR-LARRLKRDILARGRDLEGVIKQYVNMVKPAFST--FIAPSMV---E 53
           + FV+     + + L   +K       R    + + Y+      ++     A   V   +
Sbjct: 80  QKFVEEVLRINYKFLMSPIK----TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 54  PFV--------------IGICGGSASGKTTVATKIIESL--------NVPWVT------- 84
           P++              + I G   SGKT VA  +  S          + W+        
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 85  ---LLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCA 141
              L  +          I P           I   IHS       +   + Y    + C 
Sbjct: 196 ETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCL 247

Query: 142 VSKICGVSILRAGETMEQAVHDVC--KDIR---IG-KILIQT 177
           +       +L           +V   K      +  KIL+ T
Sbjct: 248 L-------VLL----------NVQNAKAWNAFNLSCKILLTT 272

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 56 VIGICGGSASGKTTVATKIIESLNVPWV 83
          VI I G   SGK+  A K+++      +
Sbjct: 3  VILITGMPGSGKSEFA-KLLKERGAKVI 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.9
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.9
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.9
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.9
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.9
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.9
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.9
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.9
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.89
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.89
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.89
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.89
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.89
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.89
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.89
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.89
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.89
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.88
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.88
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.88
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.88
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.88
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.88
1g6h_A	257	High-affinity branched-chain amino acid transport	99.88
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.88
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.87
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.87
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.87
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.86
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.86
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.86
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.85
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.85
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.85
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.85
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.84
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.82
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.75
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.75
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.72
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.71
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.68
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.68
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.65
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.62
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.59
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.59
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.56
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.46
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.45
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.43
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.41
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.37
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.34
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.34
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.33
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.32
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.31
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.29
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.29
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.25
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.25
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.24
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.24
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.17
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.17
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.15
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.15
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.13
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.09
2og2_A	359	Putative signal recognition particle receptor; nuc	99.07
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.04
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.04
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.03
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.96
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.94
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.92
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.91
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.9
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.86
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.86
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.84
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.83
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.82
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.8
1xtt_A	216	Probable uracil phosphoribosyltransferase; tetrame	98.79
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.77
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.74
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.74
3dmp_A	217	Uracil phosphoribosyltransferase; structural genom	98.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.66
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.66
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.65
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.65
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.63
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.62
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.61
1bd3_D	243	Uprtase, uracil phosphoribosyltransferase; glycosy	98.59
2ehj_A	208	Uracil phosphoribosyltransferase; structural genom	98.59
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.58
1v9s_A	208	Uracil phosphoribosyltransferase; pyrimidine salva	98.57
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.56
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.53
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.53
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.52
3ice_A	422	Transcription termination factor RHO; transcriptio	98.52
2e55_A	208	Uracil phosphoribosyltransferase; structural genom	98.51
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.49
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.47
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.46
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.46
1o5o_A	221	Uracil phosphoribosyltransferase; TM0721, structur	98.45
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.44
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.44
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.42
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.42
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.4
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.4
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.39
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.38
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.37
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.35
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.35
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.35
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.33
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.32
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.31
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.3
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.29
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.29
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.24
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.23
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.22
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.2
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.18
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.18
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.17
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.16
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.16
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.16
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.15
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.13
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.13
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.11
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.1
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.1
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.09
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.08
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.08
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.07
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.03
1i5e_A	209	Uracil phosphoribosyltransferase; salvage pathway;	98.03
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.02
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.01
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.99
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.99
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.98
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.98
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.96
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.95
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.94
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.94
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.94
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.9
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.88
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.85
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.84
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.84
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.83
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.82
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.8
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.8
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.79
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.79
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.77
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.77
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.77
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.77
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.76
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.74
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.74
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.73
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.73
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.73
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.73
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.73
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.72
1via_A	175	Shikimate kinase; structural genomics, transferase	97.72
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.71
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.69
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.69
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.69
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.67
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.67
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.67
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.66
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.65
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.64
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.64
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.64
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.63
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.63
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.62
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.62
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.61
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.6
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.59
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.59
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.58
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.58
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.57
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.57
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.56
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.56
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.56
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.55
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.55
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.54
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.53
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.51
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.5
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.5
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.49
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.49
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.45
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.45
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.45
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.45
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.44
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.44
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.4
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.39
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.37
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.37
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.36
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.36
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.35
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.35
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.32
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.31
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.31
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.31
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.29
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.29
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.28
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.28
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.28
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.26
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.26
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.25
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.24
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.22
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.21
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.2
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.2
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.19
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.17
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.16
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.16
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.15
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.15
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.15
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.14
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.12
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.11
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.1
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.1
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.1
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.1
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.09
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.09
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.09
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.08
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.08
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.07
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.07
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.07
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.06
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.06
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.06
3bos_A	242	Putative DNA replication factor; P-loop containing	97.05
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.05
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.04
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.03
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.02
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.02
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.02
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.01
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.01
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.01
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.0
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.99
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.98
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.94
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.94
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.94
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.93
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.92
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.92
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.92
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.9
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.9
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.9
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.9
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.89
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.88
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.87
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.87
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.84
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.84
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.84
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.83
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.83
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	96.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.82
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.82
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.82
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.81
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.81
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.8
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.8
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.79
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.79
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.79
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.79
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.79
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.78
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.78
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.78
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.78
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.77
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.77
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.77
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.77
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.77
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.77
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.76
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.76
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.76
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.75
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.75
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.74
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.74
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.74
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.74
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.73
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.72
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.71
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.71
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.71
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.71
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.71
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.7
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.7
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.69
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.68
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.68
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.66
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.66
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.66
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.64
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.64
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.63
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.63
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.63
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.62
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.61
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.61
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.6
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.6
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.6
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	96.58
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.56
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.56
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.55
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.55
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.55
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.54
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.54
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.54
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.53
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.53
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.52
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.52
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.51
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.51
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.5
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.5
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.47
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.47
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.47
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.44
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.44
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.43
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.43
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.43
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.42
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.42
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.42
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.41
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.41
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.41
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.4
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.37
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.36
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.36
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.36
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.35
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.35
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.34
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.34
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.34
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.34
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.33
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.33
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.33
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.29
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.28
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.26
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.25
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.24
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.23
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.21
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.2
2xxa_A	433	Signal recognition particle protein; protein trans	96.2
3kta_B	173	Chromosome segregation protein SMC; structural mai	96.16
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.15
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.13
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.13
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.13
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.12

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.92  E-value=2.6e-27  Score=197.85  Aligned_cols=152  Identities=14%  Similarity=0.194  Sum_probs=103.2

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~   94 (199)
                      ..|+++||+|+|++. .++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++...         .
T Consensus        52 ~~i~~~~vs~~y~~~-~~vL~~-isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~G~~i~~~~~~~~r~  128 (306)
T 3nh6_A           52 GRIEFENVHFSYADG-RETLQD-VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQDISQVTQASLRS  128 (306)
T ss_dssp             CCEEEEEEEEESSTT-CEEEEE-EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE-EETTEETTSBCHHHHHH
T ss_pred             CeEEEEEEEEEcCCC-Cceeee-eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE-EECCEEcccCCHHHHhc
Confidence            469999999999643 479999 999999999999999999999999999999988764433 2222110         0


Q ss_pred             cccc-ccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          95 HADI-IVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        95 ~~~~-~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      .... ......            ......+.+.+.+...........+|.++++    .|.+|||||||||+||||++. 
T Consensus       129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~  208 (306)
T 3nh6_A          129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA  208 (306)
T ss_dssp             TEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             ceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence            0011 111100            0012234444555333333344566777665    578999999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                          +.+.+.+...+  .++|.|+|+-.
T Consensus       209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~--~Tvi~itH~l~  250 (306)
T 3nh6_A          209 PGIILLDEATSALDTSNERAIQASLAKVCAN--RTTIVVAHRLS  250 (306)
T ss_dssp             CSEEEEECCSSCCCHHHHHHHHHHHHHHHTT--SEEEEECCSHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHcCC--CEEEEEEcChH
Confidence                                55556665544  57799999755

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.91  E-value=1e-25  Score=191.72  Aligned_cols=149  Identities=13%  Similarity=0.065  Sum_probs=99.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------   93 (199)
                      -|+++||+++|.+.  ++|++ +||++++|++++|+||||||||||+|+|+|++.+..+.+ ..++...           
T Consensus         4 ~l~i~~ls~~y~~~--~~L~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I-~i~G~~i~~~~~~~~~~~   79 (359)
T 3fvq_A            4 ALHIGHLSKSFQNT--PVLND-ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI-SLSGKTIFSKNTNLPVRE   79 (359)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEESSSCBCCGGG
T ss_pred             EEEEEeEEEEECCE--EEEEe-eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEECcccccccchhh
Confidence            48899999999765  79999 999999999999999999999999999999988765433 3222111           


Q ss_pred             cccccccCC-C-CCC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          94 VHADIIVPR-G-GEN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        94 ~~~~~~~~~-~-~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ....+.+.. . ..+              ....+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++. 
T Consensus        80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~---~~gL~~~~~r~~~~LSGGq~QRValArAL~~~  156 (359)
T 3fvq_A           80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE---LTGISELAGRYPHELSGGQQQRAALARALAPD  156 (359)
T ss_dssp             SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHH---HHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            001111110 0 000              0001111111211111   1233333345678999999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                          +.+.+.+.+.+.++++|.++||.+
T Consensus       157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~  200 (359)
T 3fvq_A          157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE  200 (359)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence                                556677777777899999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.91  E-value=6.8e-26  Score=219.67  Aligned_cols=157  Identities=14%  Similarity=0.083  Sum_probs=115.1

Q ss_pred             ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee------------------
Q psy9640          23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV------------------   83 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~------------------   83 (199)
                      .+.|+++||+|+|++. ..++|+| +||+|++|+.+||+|+||||||||+++|.+++.|..+                  
T Consensus      1074 ~g~I~f~nVsf~Y~~~~~~~VL~~-isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A         1074 YGKVIFKNVRFAYPERPEIEILKG-LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp             CCCEEEEEEEECCTTSCSSCSEEE-EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred             CCeEEEEEEEEeCCCCCCCccccc-eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence            3479999999999764 3479999 9999999999999999999999999999999887543                  


Q ss_pred             ---eeecccchhccccccccCC-CC-CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEecc
Q psy9640          84 ---TLLSMDSFYRVHADIIVPR-GG-ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        84 ---~~i~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~  154 (199)
                         ++++||.+.....-..+-. +. ....+.++++++++......++..+|.++++    .|.+||||||||++||||+
T Consensus      1153 ~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A         1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp             TTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred             hheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence               2233332211100000000 00 1234567888888666666677789999998    6889999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      +.                     +.+.+.+.+.+.  |+|.|+|.-.|.
T Consensus      1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~--TvI~IAHRLsTi 1279 (1321)
T 4f4c_A         1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGR--TCIVIAHRLNTV 1279 (1321)
T ss_dssp             HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSS--EEEEECSSSSTT
T ss_pred             HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCC--EEEEeccCHHHH
Confidence            76                     566666777665  559999976653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.90  E-value=2.9e-25  Score=190.14  Aligned_cols=149  Identities=14%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~   97 (199)
                      .|+++||+++|++.  .+|++ +||++++|++++|+||||||||||+|+|+|++.+..+. +..++....       ...
T Consensus         3 ~l~~~~l~~~yg~~--~~L~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~-I~i~G~~~~~~~~~~r~ig   78 (381)
T 3rlf_A            3 SVQLQNVTKAWGEV--VVSKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD-LFIGEKRMNDTPPAERGVG   78 (381)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSCEE
T ss_pred             EEEEEeEEEEECCE--EEEee-eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE-EEECCEECCCCCHHHCCEE
Confidence            48899999999765  79999 99999999999999999999999999999998876543 333322110       011


Q ss_pred             cccCCCC--CCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPRGG--ENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~~~--~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+....  .+.              ...+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL  155 (381)
T 3rlf_A           79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF  155 (381)
T ss_dssp             EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHH---HTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence            1111111  010              011111122212221   1233333455688999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++..+.++++|.|+||.+
T Consensus       156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~  195 (381)
T 3rlf_A          156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV  195 (381)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence                            667777777777899999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.90  E-value=1.1e-25  Score=182.98  Aligned_cols=153  Identities=17%  Similarity=0.179  Sum_probs=96.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VH   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~   95 (199)
                      .++++||+++|++..+++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...         ..
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~-I~i~g~~~~~~~~~~~~~~   84 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDN-INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ-VLIDGHDLALADPNWLRRQ   84 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHH
T ss_pred             ceeEEEEEEEeCCCCcceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHHhc
Confidence            588999999994322479999 99999999999999999999999999999998776443 33222100         00


Q ss_pred             cccc-cCCCCC------------CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          96 ADII-VPRGGE------------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        96 ~~~~-~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .... ......            .....+.+.+.+............|.++++    .+.+|||||+|||+||||++.  
T Consensus        85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p  164 (247)
T 2ff7_A           85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  164 (247)
T ss_dssp             EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            0111 100000            011122233333111111111223333332    467999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+.. . +.++|.++||.+.
T Consensus       165 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~  206 (247)
T 2ff7_A          165 KILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLST  206 (247)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGG
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHH
Confidence                               555555553 2 6788999998664

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.90  E-value=1.3e-25  Score=217.70  Aligned_cols=156  Identities=17%  Similarity=0.200  Sum_probs=114.8

Q ss_pred             ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------
Q psy9640          23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------   93 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------   93 (199)
                      ...|+++||+|+|++. ..++|+| +||++++|+.++|+||||||||||+++|+|++.+..+. +..|+...        
T Consensus       413 ~g~I~~~nvsF~Y~~~~~~~vL~~-isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~-I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          413 KGDITVENVHFTYPSRPDVPILRG-MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK-ITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             CCCEEEEEEEECCSSSTTSCSEEE-EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHH
T ss_pred             CCcEEEEEeeeeCCCCCCCceeec-eEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCc-ccCCCccchhccHHHH
Confidence            3479999999999764 4689999 99999999999999999999999999999998876543 33332110        


Q ss_pred             --cccccccCCC------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccc
Q psy9640          94 --VHADIIVPRG------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 --~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ...-..+..-            .....+.+++.++++......++..+|.|++|    .|.+|||||||||+||||++
T Consensus       491 r~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             HHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             hhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence              0000111100            11124567788888555555667789999988    68899999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      .                     +.+.+.+.+.+.  |+|.|+|.-.++
T Consensus       571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~--T~iiiaHrls~i  616 (1321)
T 4f4c_A          571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGR--TTIIIAHRLSTI  616 (1321)
T ss_dssp             TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS--EEEEECSCTTTT
T ss_pred             cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC--EEEEEcccHHHH
Confidence            5                     556666666654  559999987764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.90  E-value=3.7e-25  Score=179.27  Aligned_cols=150  Identities=13%  Similarity=0.091  Sum_probs=96.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------ccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------VHA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~~~   96 (199)
                      ++++|++++|++. +++|++ +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++...         ...
T Consensus         2 l~~~~l~~~y~~~-~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~i   78 (243)
T 1mv5_A            2 LSARHVDFAYDDS-EQILRD-ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENWRSQI   78 (243)
T ss_dssp             EEEEEEEECSSSS-SCSEEE-EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSCCTTTC
T ss_pred             EEEEEEEEEeCCC-CceEEE-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhCCHHHHHhhE
Confidence            6789999999422 479999 999999999999999999999999999999987654332 2222100         000


Q ss_pred             cc-ccCCCC-------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          97 DI-IVPRGG-------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        97 ~~-~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      .. ......             ......+.+.+.+............|.++++    .+.+|||||+|||+||||++.  
T Consensus        79 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p  158 (243)
T 1mv5_A           79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (243)
T ss_dssp             CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence            00 000000             0011223344444222222233334444433    467999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.+.. . +.++|.++||.+
T Consensus       159 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~  199 (243)
T 1mv5_A          159 KILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS  199 (243)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH
Confidence                               666666665 3 678899999865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=1.9e-25  Score=201.36  Aligned_cols=155  Identities=18%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ...++++||+|+|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..|+....        
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~-isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~i~g~~i~~~~~~~~r  416 (587)
T 3qf4_A          339 EGSVSFENVEFRYFENTDPVLSG-VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR-VEVDELDVRTVKLKDLR  416 (587)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEE-EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE-EEESSSBGGGBCHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCcceec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE-EEECCEEcccCCHHHHH
Confidence            34699999999997655689999 99999999999999999999999999999998876443 333322110        


Q ss_pred             -ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 -HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 -~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ... ..+....            ......+.+.++++..........+|.++++    .|.+||||||||++||||++.
T Consensus       417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~  496 (587)
T 3qf4_A          417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK  496 (587)
T ss_dssp             HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred             hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence             000 1111000            1112334555555333333344567777765    678999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+...  +.++|.|+|+..+
T Consensus       497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~  540 (587)
T 3qf4_A          497 KPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIPT  540 (587)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TCEEEEEESCHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecChHH
Confidence                                 5555666544  5677999997653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.90  E-value=6.8e-25  Score=186.85  Aligned_cols=155  Identities=14%  Similarity=0.118  Sum_probs=99.9

Q ss_pred             ccccCcccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh------
Q psy9640          21 ILARGRDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------   92 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~------   92 (199)
                      ..+.-|+++||+++|+..  ..++|++ |||++++|++++|+||||||||||+|+|+|++.|..+.+ ..++..      
T Consensus        20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~-vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I-~i~G~~i~~~~~   97 (366)
T 3tui_C           20 DDKHMIKLSNITKVFHQGTRTIQALNN-VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV-LVDGQELTTLSE   97 (366)
T ss_dssp             ---CCEEEEEEEEEEECSSSEEEEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECSSCCH
T ss_pred             CCCceEEEEeEEEEeCCCCCCeEEEEe-eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE-EECCEECCcCCH
Confidence            334469999999999642  2469999 999999999999999999999999999999988765443 332211      


Q ss_pred             ------ccccccccCC-CCCCC-chH--------------HHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeE
Q psy9640          93 ------RVHADIIVPR-GGENC-VAI--------------DLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSI  150 (199)
Q Consensus        93 ------~~~~~~~~~~-~~~~~-~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvai  150 (199)
                            +....+.+.. ..... ...              +...+.+.+.+.   .+.+....+..+.+|||||+|||+|
T Consensus        98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~---~vgL~~~~~~~~~~LSGGqkQRVaI  174 (366)
T 3tui_C           98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS---LVGLGDKHDSYPSNLSGGQKQRVAI  174 (366)
T ss_dssp             HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHH---HHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred             HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHH
Confidence                  0011111111 11100 001              111111111111   1233333345678999999999999


Q ss_pred             Eeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         151 LRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       151 aRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||++.                     +.+.+.++..+.+.+.|+|+||-+
T Consensus       175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~  225 (366)
T 3tui_C          175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD  225 (366)
T ss_dssp             HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            999975                     666666766666889999999754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.90  E-value=1.4e-25  Score=201.97  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=107.1

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ...++++||+|+|++...++|+| +||++++|++++|+||||||||||+++|+|++.|..+. +..++....        
T Consensus       337 ~~~i~~~~v~~~y~~~~~~~l~~-isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~r  414 (578)
T 4a82_A          337 QGRIDIDHVSFQYNDNEAPILKD-INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGSLR  414 (578)
T ss_dssp             SCCEEEEEEEECSCSSSCCSEEE-EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE-EEETTEEGGGSCHHHHH
T ss_pred             CCeEEEEEEEEEcCCCCCcceee-eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE-EEECCEEhhhCCHHHHh
Confidence            34699999999998655689999 99999999999999999999999999999998876443 333321100        


Q ss_pred             -ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 -HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 -~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ... ..+....            ......+++.++++..........+|.++++    .|.+||||||||++||||++.
T Consensus       415 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~  494 (578)
T 4a82_A          415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  494 (578)
T ss_dssp             HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             hheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence             000 1111100            0012234555555333333345567777766    578999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                           +.+.+.+...+  .+.|.|+|+.++.
T Consensus       495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~itH~l~~~  539 (578)
T 4a82_A          495 NPPILILDEATSALDLESESIIQEALDVLSKD--RTTLIVAHRLSTI  539 (578)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSSGGGT
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHcCC--CEEEEEecCHHHH
Confidence                                 44555555444  5779999987754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=7.7e-26  Score=204.30  Aligned_cols=154  Identities=17%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ...++++||+|+|++. .++|+| +||++++|++++|+||||||||||+++|+|++.|..+. +..++....        
T Consensus       352 ~~~i~~~~v~~~y~~~-~~~l~~-isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~i~~~~~~~~r  428 (598)
T 3qf4_B          352 RGEIEFKNVWFSYDKK-KPVLKD-ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ-ILVDGIDIRKIKRSSLR  428 (598)
T ss_dssp             CCCEEEEEEECCSSSS-SCSCCS-EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE-EEETTEEGGGSCHHHHH
T ss_pred             CCeEEEEEEEEECCCC-Cccccc-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE-EEECCEEhhhCCHHHHH
Confidence            3469999999999753 479999 99999999999999999999999999999998876443 333321110        


Q ss_pred             -ccc-cccCCCCC-----------C-CchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 -HAD-IIVPRGGE-----------N-CVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 -~~~-~~~~~~~~-----------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ... ..+.....           + ..+.+++.++++..........+|.++++    .|.+||||||||++||||++.
T Consensus       429 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~  508 (598)
T 3qf4_B          429 SSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA  508 (598)
T ss_dssp             HHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred             hceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence             000 11110000           0 11223344444222222234466777776    578999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+...  +.+.|.|+|+.++
T Consensus       509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~  552 (598)
T 3qf4_B          509 NPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNT  552 (598)
T ss_dssp             CCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTTH
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHH
Confidence                                 4555555544  5677999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.90  E-value=9.5e-25  Score=196.58  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=104.2

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~   94 (199)
                      ..++++||+|+|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..|+...         .
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~-i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~  417 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSH-VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS-ICLDGHDVRDYKLTNLRR  417 (582)
T ss_pred             CeEEEEEEEEEcCCCCcccccc-ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEhhhCCHHHHhc
Confidence            4599999999997533479999 99999999999999999999999999999998765433 22222110         0


Q ss_pred             ccc-cccCCC------------CC-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 HAD-IIVPRG------------GE-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 ~~~-~~~~~~------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ... ..+...            .. ...+.+++.+.++..........+|.++++    .|.+||||||||++||||++.
T Consensus       418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~  497 (582)
T 3b5x_A          418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR  497 (582)
T ss_pred             CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence            000 000000            00 112234455555333333344566777776    678999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                           +.+.+.+...  +.++|.++|+..+
T Consensus       498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~  541 (582)
T 3b5x_A          498 DAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLST  541 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHH
Confidence                                 4555555543  5678999998654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.89  E-value=6.7e-25  Score=176.98  Aligned_cols=150  Identities=15%  Similarity=0.100  Sum_probs=95.4

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh-----------
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY-----------   92 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~-----------   92 (199)
                      ++++||+++|+..  ..++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++..           
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~-isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~~~~~~~~~~~~   79 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKN-VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDELTK   79 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEe-eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE-EECCEEcccCCHHHHHH
Confidence            6789999999743  2369999 999999999999999999999999999999988765443 322210           


Q ss_pred             --ccccccccCC-CCCCC-c-----------------hHHHHHHHHHHHHhcCceeecCCce-eeecceecCCeeeeeeE
Q psy9640          93 --RVHADIIVPR-GGENC-V-----------------AIDLIVQHIHSQLQAGVSVDMPQGY-TYEGKRCAVSKICGVSI  150 (199)
Q Consensus        93 --~~~~~~~~~~-~~~~~-~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~~lSgGq~Qrvai  150 (199)
                        +......... ..... .                 ..+...+.+.+.+.   ...+...+ +..+.+|||||+|||+|
T Consensus        80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~LSgGq~QRv~i  156 (235)
T 3tif_A           80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK---MAELEERFANHKPNQLSGGQQQRVAI  156 (235)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH---HTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH---HCCCChhhhhCChhhCCHHHHHHHHH
Confidence              0001111111 11000 0                 01111111212221   11222221 44577999999999999


Q ss_pred             Eeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         151 LRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       151 aRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||++.                     +.+.+.++....+.++|.++||.+
T Consensus       157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  207 (235)
T 3tif_A          157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (235)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            999976                     555555555444788899999865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.6e-24  Score=183.41  Aligned_cols=149  Identities=15%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~   97 (199)
                      .++++|++++|.+.  ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ....
T Consensus         3 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig   78 (362)
T 2it1_A            3 EIKLENIVKKFGNF--TALNN-INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK-IYFDEKDVTELPPKDRNVG   78 (362)
T ss_dssp             CEEEEEEEEESSSS--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEE
T ss_pred             EEEEEeEEEEECCE--EEEEe-eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE-EEECCEECCcCCHhHCcEE
Confidence            37899999999654  79999 99999999999999999999999999999998776543 33332111       0011


Q ss_pred             cccCC-CC-CCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-GG-ENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~~-~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+.. .. .+-...+              ...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL  155 (362)
T 2it1_A           79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAK---MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL  155 (362)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            11111 11 1100011              11111111111   1233333345678999999999999999976     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++....+.++|.++||.+
T Consensus       156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~  195 (362)
T 2it1_A          156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA  195 (362)
T ss_dssp             EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence                            666677766666788999999865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.89  E-value=2.6e-24  Score=183.95  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=97.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~   97 (199)
                      .++++||+++|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++...       ....
T Consensus        11 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig   86 (372)
T 1v43_A           11 EVKLENLTKRFGNF--TAVNK-LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPKDRNIS   86 (372)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGGGGTEE
T ss_pred             eEEEEEEEEEECCE--EEEee-eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE-EECCEECCCCChhhCcEE
Confidence            58999999999754  79999 999999999999999999999999999999987764433 3222110       0001


Q ss_pred             cccCC-C-CCC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-G-GEN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~-~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+.. . ..+              ....+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL  163 (372)
T 1v43_A           87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL  163 (372)
T ss_dssp             EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHH---HTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            11000 0 000              0011111112212221   1122222344577999999999999999976     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++....+.++|.++||.+
T Consensus       164 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~  203 (372)
T 1v43_A          164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV  203 (372)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence                            666777776666789999999865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.89  E-value=6.4e-25  Score=197.71  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=104.5

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------V   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------~   94 (199)
                      ..++++||+|+|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..|+...         .
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~-v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~-i~~~g~~~~~~~~~~~~~  417 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-ILMDGHDLREYTLASLRN  417 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEE-EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE-EEETTEETTTBCHHHHHH
T ss_pred             CcEEEEEEEEEcCCCCCccccc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe-EEECCEEccccCHHHHHh
Confidence            4599999999997433479999 99999999999999999999999999999998776433 33332110         0


Q ss_pred             ccc-cccCCCC------------C-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch
Q psy9640          95 HAD-IIVPRGG------------E-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        95 ~~~-~~~~~~~------------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ... ..+....            . ...+.+++.+.++..........+|.++++    .|.+||||||||++||||++.
T Consensus       418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~  497 (582)
T 3b60_A          418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_dssp             TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence            000 0111000            0 112234455555222222334456777766    578999999999999999975


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                           +.+.+.+...  +.++|.++|+..+.
T Consensus       498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~  542 (582)
T 3b60_A          498 DSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI  542 (582)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH
Confidence                                 4555555543  56789999987654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.89  E-value=1.3e-24  Score=179.01  Aligned_cols=152  Identities=14%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------   93 (199)
                      -++++||+++|++. .++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...           
T Consensus         7 ~l~i~~ls~~y~~~-~~~L~~-isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~   83 (275)
T 3gfo_A            7 ILKVEELNYNYSDG-THALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR-ILFDNKPIDYSRKGIMKLR   83 (275)
T ss_dssp             EEEEEEEEEECTTS-CEEEEE-EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCCSHHHHHHHH
T ss_pred             EEEEEEEEEEECCC-CeEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE-EEECCEECCcccccHHHHh
Confidence            48999999999754 359999 99999999999999999999999999999988776443 33332111           


Q ss_pred             cccccccCC---CCCCCc--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          94 VHADIIVPR---GGENCV--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 ~~~~~~~~~---~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ......+..   ......              ..+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.
T Consensus        84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~  160 (275)
T 3gfo_A           84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALK---RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM  160 (275)
T ss_dssp             HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHH---HTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence            001111110   001100              11111112212221   1222222344677999999999999999976


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                           +.+.+.++....+.++|.++||-+.+
T Consensus       161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~  207 (275)
T 3gfo_A          161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV  207 (275)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence                                 55556565422367889999987653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.89  E-value=1.9e-24  Score=184.00  Aligned_cols=149  Identities=11%  Similarity=0.123  Sum_probs=97.5

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHAD   97 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~   97 (199)
                      .++++|++++|.+.  ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ....
T Consensus         3 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~ig   78 (359)
T 2yyz_A            3 SIRVVNLKKYFGKV--KAVDG-VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE-IYFDDVLVNDIPPKYREVG   78 (359)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCGGGTTEE
T ss_pred             EEEEEEEEEEECCE--EEEee-eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccE-EEECCEECCCCChhhCcEE
Confidence            47899999999654  79999 99999999999999999999999999999998776543 33332110       0011


Q ss_pred             cccCC-CC-CC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          98 IIVPR-GG-EN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        98 ~~~~~-~~-~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      +.+.. .. .+              ....+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.     
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL  155 (359)
T 2yyz_A           79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL  155 (359)
T ss_dssp             EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            11111 00 00              0001111111111111   1222222344677999999999999999976     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++....+.++|.++||.+
T Consensus       156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~  195 (359)
T 2yyz_A          156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA  195 (359)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence                            666676766666789999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.89  E-value=7.4e-25  Score=180.25  Aligned_cols=155  Identities=14%  Similarity=0.036  Sum_probs=95.4

Q ss_pred             cCcccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          24 RGRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      .-|+++||++.|++ ..+++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...         
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~   92 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQG-LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK-VLLDGEPLVQYDHHYLH   92 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGBCHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEe-eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE-EEECCEEcccCCHHHHh
Confidence            35999999999975 22479999 99999999999999999999999999999998776443 33332110         


Q ss_pred             ccccc-ccCCCCCCC-------------chHHHHHHHHHHHHhcCceeecCCc----eeeecceecCCeeeeeeEEeccc
Q psy9640          94 VHADI-IVPRGGENC-------------VAIDLIVQHIHSQLQAGVSVDMPQG----YTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 ~~~~~-~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                      ..... .........             ...+.+...+...........++.+    .+..+.+|||||+|||+||||++
T Consensus        93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~  172 (271)
T 2ixe_A           93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI  172 (271)
T ss_dssp             HHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred             ccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence            00011 111111000             0001111111010000011112212    23357799999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.+.....+.++|.++||.+
T Consensus       173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~  218 (271)
T 2ixe_A          173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS  218 (271)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            6                     555555554444678899999854

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.89  E-value=1.8e-24  Score=173.19  Aligned_cols=147  Identities=12%  Similarity=0.019  Sum_probs=94.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------------   93 (199)
                      ++++|++++|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...            
T Consensus         5 l~~~~l~~~y~~~--~~l~~-vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~~~~   80 (224)
T 2pcj_A            5 LRAENIKKVIRGY--EILKG-ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK-VFLEGKEVDYTNEKELSLLR   80 (224)
T ss_dssp             EEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEE-EEETTEECCSSCHHHHHHHH
T ss_pred             EEEEeEEEEECCE--eeEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCCCCHHHHHHHH
Confidence            7899999999764  79999 99999999999999999999999999999988776544 33332110            


Q ss_pred             -cccccc-cCCCCCCC-chHHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          94 -VHADII-VPRGGENC-VAIDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 -~~~~~~-~~~~~~~~-~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                       ...... ........ ...+.+              .+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.
T Consensus        81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgGq~qrv~laral~~  157 (224)
T 2pcj_A           81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLS---ELGLGDKLSRKPYELSGGEQQRVAIARALAN  157 (224)
T ss_dssp             HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred             hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence             011111 11111111 011111              111111111   1223333344677999999999999999976


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                           +.+.+.+.... +.++|.++||.+
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~  201 (224)
T 2pcj_A          158 EPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE  201 (224)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence                                 55555555444 678899999854

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.89  E-value=2.5e-24  Score=183.04  Aligned_cols=149  Identities=14%  Similarity=0.136  Sum_probs=98.0

Q ss_pred             Ccccccceeec-cccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccc
Q psy9640          25 GRDLEGVIKQY-VNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y-~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~   96 (199)
                      .++++|++++| .+.  ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ...
T Consensus        14 ~l~~~~l~~~y~g~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~r~i   89 (355)
T 1z47_A           14 TIEFVGVEKIYPGGA--RSVRG-VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD-VWIGGKRVTDLPPQKRNV   89 (355)
T ss_dssp             EEEEEEEEECCTTST--TCEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTCCGGGSSE
T ss_pred             eEEEEEEEEEEcCCC--EEEee-eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEECCEECCcCChhhCcE
Confidence            48999999999 543  79999 99999999999999999999999999999998776543 33332111       001


Q ss_pred             ccccCC-C-CCCCchHH--------------HHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 DIIVPR-G-GENCVAID--------------LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~~~~~~-~-~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      .+.+.. . ..+....+              ...+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.    
T Consensus        90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~---~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l  166 (355)
T 1z47_A           90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR---FMRLESYANRFPHELSGGQQQRVALARALAPRPQV  166 (355)
T ss_dssp             EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            111110 0 11100001              11111111111   1223233344678999999999999999976    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       +.+.+.++....+.++|.++||.+
T Consensus       167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~  207 (355)
T 1z47_A          167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE  207 (355)
T ss_dssp             EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence                             666677776666789999999865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.89  E-value=2.3e-24  Score=183.34  Aligned_cols=149  Identities=15%  Similarity=0.107  Sum_probs=97.7

Q ss_pred             Ccccccceeeccccccc--cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          25 GRDLEGVIKQYVNMVKP--AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~--~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      -++++||+++|++.  +  +|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...         
T Consensus         3 ~l~i~~l~~~y~~~--~~~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~i~~~~~~~~~   78 (353)
T 1oxx_K            3 RIIVKNVSKVFKKG--KVVALDN-VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE-LYFDDRLVASNGKLIVP   78 (353)
T ss_dssp             CEEEEEEEEEEGGG--TEEEEEE-EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE-EEETTEEEEETTEESSC
T ss_pred             EEEEEeEEEEECCE--eeeeEec-eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCEECcccccccCC
Confidence            37899999999764  6  9999 99999999999999999999999999999998776443 33322110         


Q ss_pred             ---cccccccCC-CC-CC--------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          94 ---VHADIIVPR-GG-EN--------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        94 ---~~~~~~~~~-~~-~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                         ....+.+.. .. .+              ....+...+.+.+.+.   .+.+....+..+.+|||||+|||+||||+
T Consensus        79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~~~~~~LSGGq~QRvalAraL  155 (353)
T 1oxx_K           79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAK---ILDIHHVLNHFPRELSGAQQQRVALARAL  155 (353)
T ss_dssp             GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred             hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence               000111111 00 00              0011111112212221   12222223446779999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +.                     +.+.+.++....+.++|.++||.+
T Consensus       156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~  202 (353)
T 1oxx_K          156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA  202 (353)
T ss_dssp             TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            76                     666677766666788999999865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.88  E-value=3.3e-24  Score=183.49  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=98.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------   94 (199)
                      .++++||+++|++.  ++|++ +||++++|++++|+||||||||||+|+|+|++.+..+. +..++....          
T Consensus         3 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~i~g~~~~~~~~~~~~~~   78 (372)
T 1g29_1            3 GVRLVDVWKVFGEV--TAVRE-MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ-IYIGDKLVADPEKGIFVPP   78 (372)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE-EEETTEEEEEGGGTEECCG
T ss_pred             EEEEEeEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE-EEECCEECccccccccCCH
Confidence            37899999999654  79999 99999999999999999999999999999998776543 333322110          


Q ss_pred             ---ccccccCCC-C-CCCchHHH--------------HHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          95 ---HADIIVPRG-G-ENCVAIDL--------------IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        95 ---~~~~~~~~~-~-~~~~~~~~--------------~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                         ...+.+... . .+....+.              ..+.+.+.+.   .+.+....+..+.+|||||+|||+||||++
T Consensus        79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~r~~~~LSGGq~QRvalArAL~  155 (372)
T 1g29_1           79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE---LLGLTELLNRKPRELSGGQRQRVALGRAIV  155 (372)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred             hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchHhcCCcccCCHHHHHHHHHHHHHh
Confidence               011111111 1 11000111              1111111111   122333334467899999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.++....+.++|.++||.+
T Consensus       156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~  201 (372)
T 1g29_1          156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV  201 (372)
T ss_dssp             TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence            6                     666677776666789999999865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.88  E-value=1.3e-24  Score=177.85  Aligned_cols=153  Identities=15%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             cCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------
Q psy9640          24 RGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------   94 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------   94 (199)
                      ..++++||+++|++. .+++|++ +||++++|++++|+||||||||||+++|+|++.+  .|.+..++....        
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~   92 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKS-INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIR   92 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHH
T ss_pred             CeEEEEEEEEEeCCCCcCceeEe-eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHh
Confidence            359999999999753 2469999 9999999999999999999999999999999864  355554432110        


Q ss_pred             -cccc-ccCCCCCC------------CchHHHHHHHHHHHHh-cCceeecCCceee----ecceecCCeeeeeeEEeccc
Q psy9640          95 -HADI-IVPRGGEN------------CVAIDLIVQHIHSQLQ-AGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        95 -~~~~-~~~~~~~~------------~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~  155 (199)
                       .... ........            ....+.+.+.+ +... ......+|.++++    .+.+|||||+|||+||||++
T Consensus        93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l-~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  171 (260)
T 2ghi_A           93 SIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKAT-KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL  171 (260)
T ss_dssp             TTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHH-HHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred             ccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHH-HHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence             0011 11111110            01112222222 1111 1111134444332    46799999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      .                     +.+.+.+...  +.++|.++||.+..
T Consensus       172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~~~  217 (260)
T 2ghi_A          172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTI  217 (260)
T ss_dssp             HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGS
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH
Confidence            6                     5555655543  56889999987643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.88  E-value=1e-24  Score=187.51  Aligned_cols=154  Identities=13%  Similarity=0.099  Sum_probs=98.7

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc---------
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR---------   93 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~---------   93 (199)
                      ...|+++||+++|+....++|++ +||++++|++++|+||||||||||+++|+|++.  ..|.+..++...         
T Consensus        17 ~~~i~~~~l~~~y~~~~~~~L~~-vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~r   93 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNAILEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWR   93 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCCSEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHH
T ss_pred             CCeEEEEEEEEEecCCCeEEeec-eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHh
Confidence            35699999999996434589999 999999999999999999999999999999875  345554443211         


Q ss_pred             cccccccCC-CCC-----------CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch-
Q psy9640          94 VHADIIVPR-GGE-----------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        94 ~~~~~~~~~-~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      ....+.+.. ...           .....+.+.+.+............|..+++    .+.+|||||+|||+||||++. 
T Consensus        94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~  173 (390)
T 3gd7_A           94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK  173 (390)
T ss_dssp             HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence            011111111 100           011123333334221111112223333333    455699999999999999975 


Q ss_pred             --------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 --------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 --------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                          +...+.+...  +.++|.++||.+.
T Consensus       174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~--~~tvi~vtHd~e~  216 (390)
T 3gd7_A          174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFA--DCTVILCEARIEA  216 (390)
T ss_dssp             CCEEEEESHHHHSCHHHHHHHHHHHHTTTT--TSCEEEECSSSGG
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEEcCHHH
Confidence                                5555665543  5678999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.88  E-value=2.4e-24  Score=176.74  Aligned_cols=145  Identities=8%  Similarity=-0.019  Sum_probs=94.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------H   95 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~   95 (199)
                      -++++|+++.|.+.  ++|++ +||++++|++++|+||||||||||+++|+|++.+..+.+ ..++....         .
T Consensus        11 ~l~~~~l~~~~~~~--~vL~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I-~~~g~~~~~~~~~~~~~~   86 (266)
T 4g1u_C           11 LLEASHLHYHVQQQ--ALIND-VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC-HLLGQNLNSWQPKALART   86 (266)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE-EETTEETTTSCHHHHHHH
T ss_pred             eEEEEeEEEEeCCe--eEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE-EECCEECCcCCHHHHhhe
Confidence            48999999999765  79999 999999999999999999999999999999987764433 32221100         0


Q ss_pred             cccc-cCCCC-C---------------C-CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-
Q psy9640          96 ADII-VPRGG-E---------------N-CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-  156 (199)
Q Consensus        96 ~~~~-~~~~~-~---------------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-  156 (199)
                      .... ..... .               . ....+.+.+.+ +.+      .+....+..+.+|||||+|||+||||++. 
T Consensus        87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l-~~~------~l~~~~~~~~~~LSgGq~QRv~iAraL~~~  159 (266)
T 4g1u_C           87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVM-AQT------DCLALAQRDYRVLSGGEQQRVQLARVLAQL  159 (266)
T ss_dssp             EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHH-HHT------TCSTTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHH-HHc------CChhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence            0000 00000 0               0 01112222222 222      22222234567899999999999999972 


Q ss_pred             --------------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 --------------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 --------------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                                +.+.+.++...-+.++|.++||-+
T Consensus       160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~  209 (266)
T 4g1u_C          160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN  209 (266)
T ss_dssp             CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred             cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence                                      455555555544578899999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.88  E-value=4.1e-24  Score=181.34  Aligned_cols=147  Identities=10%  Similarity=0.038  Sum_probs=97.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      ++++|++++|++  . ++++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++...       ....+
T Consensus         2 l~~~~l~~~y~~--~-~l~~-vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~-I~~~g~~i~~~~~~~r~ig~   76 (348)
T 3d31_A            2 IEIESLSRKWKN--F-SLDN-LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR-ILLDGKDVTDLSPEKHDIAF   76 (348)
T ss_dssp             EEEEEEEEECSS--C-EEEE-EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE-EEETTEECTTSCHHHHTCEE
T ss_pred             EEEEEEEEEECC--E-EEee-eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcE-EEECCEECCCCchhhCcEEE
Confidence            678999999964  3 8999 99999999999999999999999999999998776544 33333111       01111


Q ss_pred             ccCC-CCCCC-chHHHHH-----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640          99 IVPR-GGENC-VAIDLIV-----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus        99 ~~~~-~~~~~-~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                      .+.. ..... ...+.+.           +.+.+.+.   .+.+....+..+.+|||||+|||+||||++.         
T Consensus        77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~---~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE  153 (348)
T 3d31_A           77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR---DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE  153 (348)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHH---HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred             EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            1111 11110 1111110           11111111   1223333345678999999999999999976         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                  +.+.+.++..+.+.++|.++||.+
T Consensus       154 P~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~  189 (348)
T 3d31_A          154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT  189 (348)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                        667777776666789999999865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.88  E-value=4.4e-24  Score=174.93  Aligned_cols=148  Identities=14%  Similarity=0.106  Sum_probs=95.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------   93 (199)
                      -++++||++.|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...           
T Consensus        24 ~l~i~~l~~~y~~~--~vL~~-vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~i~~~~~~~~~~~   99 (263)
T 2olj_A           24 MIDVHQLKKSFGSL--EVLKG-INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE-IIIDGINLKAKDTNLNKVR   99 (263)
T ss_dssp             SEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEESSSTTCCHHHHH
T ss_pred             eEEEEeEEEEECCE--EEEEe-eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE-EEECCEECCCccccHHHHh
Confidence            48999999999654  79999 99999999999999999999999999999998776543 33332110           


Q ss_pred             cccccccCC-CCCCC-chHHHH---------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch
Q psy9640          94 VHADIIVPR-GGENC-VAIDLI---------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET  156 (199)
Q Consensus        94 ~~~~~~~~~-~~~~~-~~~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~  156 (199)
                      ......... ..... ...+.+               .+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.
T Consensus       100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~  176 (263)
T 2olj_A          100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLD---KVGLKDKAHAYPDSLSGGQAQRVAIARALAM  176 (263)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence            001111111 11111 011111               111111111   1122222344677999999999999999976


Q ss_pred             ---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                           +.+.+.+.... +.++|.++||.+
T Consensus       177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~  220 (263)
T 2olj_A          177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG  220 (263)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence                                 55556555444 788899999854

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.88  E-value=1e-23  Score=172.10  Aligned_cols=57  Identities=23%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      -++++|++++|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.
T Consensus         7 ~l~i~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   63 (257)
T 1g6h_A            7 ILRTENIVKYFGEF--KALDG-VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR   63 (257)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEEeeeEEEECCE--eeEee-eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            38999999999754  79999 99999999999999999999999999999998775433

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.88  E-value=9.9e-24  Score=167.93  Aligned_cols=148  Identities=14%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----ccccccc-
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----RVHADII-   99 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----~~~~~~~-   99 (199)
                      .|+++|++++|++   ++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++..    +...... 
T Consensus        10 ~l~~~~ls~~y~~---~il~~-vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~i~~v~   84 (214)
T 1sgw_A           10 KLEIRDLSVGYDK---PVLER-ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE-IIYNGVPITKVKGKIFFLP   84 (214)
T ss_dssp             EEEEEEEEEESSS---EEEEE-EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEEGGGGGGGEEEEC
T ss_pred             eEEEEEEEEEeCC---eEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE-EEECCEEhhhhcCcEEEEe
Confidence            4889999999964   69999 99999999999999999999999999999988776543 3333211    0111111 


Q ss_pred             cCCCCCCCch-HHHHH------------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------
Q psy9640         100 VPRGGENCVA-IDLIV------------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------  156 (199)
Q Consensus       100 ~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------  156 (199)
                      .........+ .+.+.            +.+.+.+.   ...+... +..+.+|||||+||++||||++.          
T Consensus        85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~---~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP  160 (214)
T 1sgw_A           85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE---SVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP  160 (214)
T ss_dssp             SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHH---HTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred             CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHH---HcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            1111111101 11110            01111111   1122222 34577999999999999999975          


Q ss_pred             -----------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 -----------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -----------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                 +.+.+.+.... +.++|.++||.+..
T Consensus       161 ts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~  196 (214)
T 1sgw_A          161 VVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSY  196 (214)
T ss_dssp             TTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTT
T ss_pred             CcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence                       44555554332 67889999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.87  E-value=5.3e-24  Score=174.33  Aligned_cols=148  Identities=13%  Similarity=0.063  Sum_probs=95.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-----------   93 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-----------   93 (199)
                      -++++||+++|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++...           
T Consensus         6 ~l~i~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~   81 (262)
T 1b0u_A            6 KLHVIDLHKRYGGH--EVLKG-VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI-IVNGQNINLVRDKDGQLK   81 (262)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCEEECTTSSEE
T ss_pred             eEEEeeEEEEECCE--EEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEcccccccccccc
Confidence            48999999999654  79999 999999999999999999999999999999987765443 3322110           


Q ss_pred             -----------cccccccCC-CCCCC-chHHHH---------------HHHHHHHHhcCceeecCCc-eeeecceecCCe
Q psy9640          94 -----------VHADIIVPR-GGENC-VAIDLI---------------VQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSK  144 (199)
Q Consensus        94 -----------~~~~~~~~~-~~~~~-~~~~~~---------------~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq  144 (199)
                                 ......... ..... ...+.+               .+.+.+.+.   .+.+... .+..+.+|||||
T Consensus        82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~~~~LSgGq  158 (262)
T 1b0u_A           82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA---KVGIDERAQGKYPVHLSGGQ  158 (262)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---HTTCCHHHHTSCGGGSCHHH
T ss_pred             ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHH---HcCCCchhhcCCcccCCHHH
Confidence                       001111111 11111 011111               011111111   1122222 344677999999


Q ss_pred             eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +|||+||||++.                     +.+.+.++... +.++|.++||.+
T Consensus       159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~  214 (262)
T 1b0u_A          159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG  214 (262)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence            999999999976                     55555555444 778899999854

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.87  E-value=1.2e-23  Score=171.68  Aligned_cols=150  Identities=11%  Similarity=0.081  Sum_probs=95.3

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------c
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------V   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~   94 (199)
                      +..++++||+++|.+.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+. +..++...        .
T Consensus        13 ~~~l~i~~l~~~y~~~--~vl~~-vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~-I~~~g~~~~~~~~~~~~   88 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKK--EILKG-ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI-VTVFGKNVVEEPHEVRK   88 (256)
T ss_dssp             -CCEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTCHHHHHT
T ss_pred             CCeEEEEEEEEEECCE--EEEEe-eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE-EEECCEECCccHHHHhh
Confidence            4569999999999654  79999 99999999999999999999999999999998776543 33332110        0


Q ss_pred             ccccc-cCCCCCCCch-HHHH--------------HHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          95 HADII-VPRGGENCVA-IDLI--------------VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~-~~~~~~~~~~-~~~~--------------~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ..... .........+ .+.+              .+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.  
T Consensus        89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  165 (256)
T 1vpl_A           89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE---IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP  165 (256)
T ss_dssp             TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            01111 1111111101 1111              011111111   1223233344677999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.++... +.++|.++||.+
T Consensus       166 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~  207 (256)
T 1vpl_A          166 RLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNML  207 (256)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHH
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence                               45555555333 678899999854

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.87  E-value=3.1e-24  Score=172.41  Aligned_cols=153  Identities=14%  Similarity=0.058  Sum_probs=91.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee--------eecccchhcccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT--------LLSMDSFYRVHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~--------~i~~d~~~~~~~   96 (199)
                      .++++||+++|+...+++|++ +||++++|++++|+||||||||||+++|+|++.|..+.        +++++.......
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~t   84 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKD-INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGT   84 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEE-EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBC
T ss_pred             eEEEEEEEEEeCCCCceeeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCC
Confidence            489999999996433579999 99999999999999999999999999999998776433        223322110000


Q ss_pred             ccccCCCCCCCchHHHHHHHHHHHHhc-CceeecCCcee----eecceecCCeeeeeeEEeccch---------------
Q psy9640          97 DIIVPRGGENCVAIDLIVQHIHSQLQA-GVSVDMPQGYT----YEGKRCAVSKICGVSILRAGET---------------  156 (199)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~----~~g~~lSgGq~QrvaiaRA~~~---------------  156 (199)
                      -...-.... ........+.+ +.... .....+|.+.+    ..+.+|||||+|||+||||++.               
T Consensus        85 v~enl~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD  162 (229)
T 2pze_A           85 IKENIIFGV-SYDEYRYRSVI-KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD  162 (229)
T ss_dssp             HHHHHHTTS-CCCHHHHHHHH-HHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred             HHHHhhccC-CcChHHHHHHH-HHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence            000000000 00011111111 11110 01111232222    1357899999999999999975               


Q ss_pred             --hHHHHHhh-ccc--cceeEEEEEeCCC
Q psy9640         157 --MEQAVHDV-CKD--IRIGKILIQTNKA  180 (199)
Q Consensus       157 --~~~~l~~~-~p~--~~~~~~~~~~~~~  180 (199)
                        ....+.+. ...  .+.++|.++||.+
T Consensus       163 ~~~~~~i~~~l~~~~~~~~tvi~vtH~~~  191 (229)
T 2pze_A          163 VLTEKEIFESCVCKLMANKTRILVTSKME  191 (229)
T ss_dssp             HHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence              33334332 211  2568899999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.87  E-value=4.2e-24  Score=172.50  Aligned_cols=152  Identities=13%  Similarity=0.143  Sum_probs=93.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe--------eeeecccchhcccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW--------VTLLSMDSFYRVHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~--------~~~i~~d~~~~~~~   96 (199)
                      -++++||++.|++..+++|++ +||++++|++++|+||||||||||+++|+|++.|..        +++++++.......
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~-vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t   81 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNG-ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS   81 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred             eEEEEEEEEEeCCCCCceeee-eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence            478999999997433479999 999999999999999999999999999999886543        23334432211000


Q ss_pred             ---ccccCCCCCCCchHHHHHHHHHHHHhcCcee-ecCCc----eeeecceecCCeeeeeeEEeccch------------
Q psy9640          97 ---DIIVPRGGENCVAIDLIVQHIHSQLQAGVSV-DMPQG----YTYEGKRCAVSKICGVSILRAGET------------  156 (199)
Q Consensus        97 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~----~~~~g~~lSgGq~QrvaiaRA~~~------------  156 (199)
                         .+..... ......+.+   + +.......+ ..|.+    .+..+.+|||||+|||+||||++.            
T Consensus        82 v~enl~~~~~-~~~~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts  156 (237)
T 2cbz_A           82 LRENILFGCQ-LEEPYYRSV---I-QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS  156 (237)
T ss_dssp             HHHHHHTTSC-CCTTHHHHH---H-HHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred             HHHHhhCccc-cCHHHHHHH---H-HHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence               0001000 011111111   1 111110011 12222    123567999999999999999975            


Q ss_pred             -----hHHHHHhhcc-----ccceeEEEEEeCCCCC
Q psy9640         157 -----MEQAVHDVCK-----DIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -----~~~~l~~~~p-----~~~~~~~~~~~~~~~~  182 (199)
                           ....+.+.+-     ..+.++|.++||.+..
T Consensus       157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~  192 (237)
T 2cbz_A          157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL  192 (237)
T ss_dssp             TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG
T ss_pred             ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH
Confidence                 2333333331     1257889999987653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.87  E-value=1.4e-23  Score=171.10  Aligned_cols=145  Identities=10%  Similarity=0.034  Sum_probs=94.6

Q ss_pred             cccccceeecc-ccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccc-
Q psy9640          26 RDLEGVIKQYV-NMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVH-   95 (199)
Q Consensus        26 i~l~nvs~~y~-~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~-   95 (199)
                      ++++|+++.|+ +.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+        ++++++...... 
T Consensus         5 l~i~~l~~~y~~~~--~vl~~-isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~   81 (253)
T 2nq2_C            5 LSVENLGFYYQAEN--FLFQQ-LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY   81 (253)
T ss_dssp             EEEEEEEEEETTTT--EEEEE-EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred             EEEeeEEEEeCCCC--eEEEE-EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence            78999999997 43  79999 9999999999999999999999999999999877643        334443211100 


Q ss_pred             ---cccccCC----CCC--CCch-HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---------
Q psy9640          96 ---ADIIVPR----GGE--NCVA-IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---------  156 (199)
Q Consensus        96 ---~~~~~~~----~~~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---------  156 (199)
                         ..+....    ...  .... .+.+.+.+ +.+      .+....+..+.+|||||+|||+||||++.         
T Consensus        82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE  154 (253)
T 2nq2_C           82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL-DYL------NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE  154 (253)
T ss_dssp             BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHH-HHT------TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred             CHHHHHHHhhhhhcccccCCCHHHHHHHHHHH-HHc------CChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence               0000100    000  0111 12222223 222      22222234567999999999999999975         


Q ss_pred             ------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                  +.+.+.+.....+.++|.++||.+
T Consensus       155 Pts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~  190 (253)
T 2nq2_C          155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN  190 (253)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence                        455555554433678899999864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.86  E-value=3.4e-23  Score=167.45  Aligned_cols=148  Identities=12%  Similarity=0.082  Sum_probs=92.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh----------cc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY----------RV   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~----------~~   94 (199)
                      -++++||+++|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++..          +.
T Consensus         6 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~   81 (240)
T 1ji0_A            6 VLEVQSLHVYYGAI--HAIKG-IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI-IFNGQDITNKPAHVINRM   81 (240)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHHHHHT
T ss_pred             eEEEEeEEEEECCe--eEEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE-EECCEECCCCCHHHHHhC
Confidence            38899999999764  79999 999999999999999999999999999999887764433 222210          00


Q ss_pred             ccccc-cCCCCCCC--------------chHHHHHHHHHHHHhcCcee-ecCCceeeecceecCCeeeeeeEEeccch--
Q psy9640          95 HADII-VPRGGENC--------------VAIDLIVQHIHSQLQAGVSV-DMPQGYTYEGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~-~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ..... ........              ...+...+.+.+.+.   .+ .+....+..+.+|||||+|||+||||++.  
T Consensus        82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p  158 (240)
T 1ji0_A           82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS---LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP  158 (240)
T ss_dssp             TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHH---HCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHH---HcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            00111 11000000              000011111111111   01 12222234567899999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                         +.+.+.+... -+.++|.++||.+
T Consensus       159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~  200 (240)
T 1ji0_A          159 KLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL  200 (240)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH
Confidence                               4455555433 3678899999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.86  E-value=2.8e-23  Score=170.30  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=93.9

Q ss_pred             cccccceeeccccc---cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh------cccc
Q psy9640          26 RDLEGVIKQYVNMV---KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY------RVHA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~---~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~------~~~~   96 (199)
                      ++++|++++|+...   +++|++ +||++++|++++|+||||||||||+++|+|++.+..+. +..++..      +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~-I~~~g~~~~~~~~~~~i   80 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALEN-VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD-VLYDGERKKGYEIRRNI   80 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCHHHHGGGE
T ss_pred             EEEEEEEEEecCCCccccceeee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE-EEECCEECchHHhhhhE
Confidence            68999999996211   479999 99999999999999999999999999999988765433 3222210      0000


Q ss_pred             ccccCC---CCC----------------C-CchHHHHHHHHHHHHhcCceeecC--CceeeecceecCCeeeeeeEEecc
Q psy9640          97 DIIVPR---GGE----------------N-CVAIDLIVQHIHSQLQAGVSVDMP--QGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        97 ~~~~~~---~~~----------------~-~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                      ......   ...                . ....+.+.+.+ +.+      .+.  ...+..+.+|||||+|||+||||+
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l-~~~------gl~~~~~~~~~~~~LSgGq~qRv~lAraL  153 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM-EFV------GLDFDSFKDRVPFFLSGGEKRRVAIASVI  153 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHH-HHT------TCCHHHHTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHH-HHc------CcCCcccccCChhhCCHHHHHHHHHHHHH
Confidence            000000   000                0 00111222222 221      222  222345678999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      +.                     +.+.+.+.... +.++|.++||.+..
T Consensus       154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~  201 (266)
T 2yz2_A          154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETV  201 (266)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTT
T ss_pred             HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence            76                     55555555444 67889999987654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.86  E-value=1.7e-23  Score=202.52  Aligned_cols=154  Identities=12%  Similarity=0.110  Sum_probs=105.7

Q ss_pred             ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------
Q psy9640          23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------   94 (199)
                      ...++++||+|+|++. ..++|+| +||++++|++++|+||||||||||+++|+|++.+..+ .+..|+....       
T Consensus       385 ~g~i~~~~v~~~y~~~~~~~vL~~-isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          385 QGNLEFKNIHFSYPSRKEVQILKG-LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG-MVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             CCCEEEEEEEECCSSTTSCCSEEE-EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE-EEEETTEEGGGSCHHHH
T ss_pred             CCeEEEEEEEEEcCCCCCCcceec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEHHhCCHHHH
Confidence            4579999999999763 3579999 9999999999999999999999999999999887643 3333332110       


Q ss_pred             --ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccc
Q psy9640          95 --HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        95 --~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ... ..+....            ......+++.++++..........+|.++++    .|.+|||||||||+||||++
T Consensus       463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             HHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             HhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence              000 1111100            0112345565655443333445577888776    57899999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.....  +.++|.|+|+-.
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~  586 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS  586 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH
Confidence            5                     4444444444  457799999644

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.85  E-value=7.3e-23  Score=198.08  Aligned_cols=156  Identities=15%  Similarity=0.140  Sum_probs=109.0

Q ss_pred             ccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------
Q psy9640          23 ARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------   94 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------   94 (199)
                      ...++++||+|+|++. ..++|++ +||++++|+++||+||||||||||+++|+|++.|..+. +..|+....       
T Consensus      1028 ~g~i~~~~v~~~y~~~~~~~~l~~-vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~-I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A         1028 EGNVQFSGVVFNYPTRPSIPVLQG-LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS-VFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp             SCCEEEEEEEBCCSCGGGCCSBSS-CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE-EESSSSCTTSSCHHHH
T ss_pred             CCcEEEEEEEEECCCCCCCeeecc-eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEcccCCHHHH
Confidence            3469999999999754 3479999 99999999999999999999999999999988775433 333332110       


Q ss_pred             ---ccccccCCC-------------CC-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEec
Q psy9640          95 ---HADIIVPRG-------------GE-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRA  153 (199)
Q Consensus        95 ---~~~~~~~~~-------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA  153 (199)
                         ..-.++...             .. .....+++.++++..........+|.++++    .|.+|||||||||+||||
T Consensus      1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A         1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp             TTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred             HhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence               000111110             00 112345566666444444455567888887    578999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      ++.                     +.+.+.+...  +.++|.|+||-++.
T Consensus      1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~--~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A         1186 LVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTI 1233 (1284)
T ss_dssp             HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS--SSCEEEECSCTTGG
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecCHHHH
Confidence            975                     5555555444  45779999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.85  E-value=7.8e-23  Score=166.25  Aligned_cols=149  Identities=9%  Similarity=0.026  Sum_probs=88.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc-CCCeeeeecccchhcc--------c-
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL-NVPWVTLLSMDSFYRV--------H-   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l-~~~~~~~i~~d~~~~~--------~-   95 (199)
                      ++++||+++|++.  ++|++ +||++++|++++|+||||||||||+++|+|+. .++..|.+..++....        . 
T Consensus         4 l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (250)
T 2d2e_A            4 LEIRDLWASIDGE--TILKG-VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK   80 (250)
T ss_dssp             EEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred             EEEEeEEEEECCE--EEEec-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence            7899999999754  79999 99999999999999999999999999999972 2344455544432110        0 


Q ss_pred             -cccc-cCCCCCCCch-HHHHH-----------------HHHHHHHhcCceeecC-Cceeeecce-ecCCeeeeeeEEec
Q psy9640          96 -ADII-VPRGGENCVA-IDLIV-----------------QHIHSQLQAGVSVDMP-QGYTYEGKR-CAVSKICGVSILRA  153 (199)
Q Consensus        96 -~~~~-~~~~~~~~~~-~~~~~-----------------~~l~~~~~~~~~~~~~-~~~~~~g~~-lSgGq~QrvaiaRA  153 (199)
                       .... .......... .+.+.                 +.+.+.+.   .+.++ ...+..+.+ |||||+|||+||||
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~~~LSgGqkQrv~iAra  157 (250)
T 2d2e_A           81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE---LLDWDESYLSRYLNEGFSGGEKKRNEILQL  157 (250)
T ss_dssp             TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH---HHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred             cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHH---HcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence             0011 1111111111 11110                 01101110   11221 222334567 99999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      ++.                     +.+.+.+... .+.++|.++||.+.
T Consensus       158 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~  205 (250)
T 2d2e_A          158 LVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI  205 (250)
T ss_dssp             HHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG
T ss_pred             HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence            975                     4555555533 36788999998654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.85  E-value=1.1e-22  Score=164.57  Aligned_cols=145  Identities=8%  Similarity=-0.042  Sum_probs=90.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      ++++|++++|++    +|++ +||++++ ++++|+||||||||||+++|+|++.|..+. +..++...       .....
T Consensus         2 l~~~~l~~~y~~----~l~~-isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~i~~   74 (240)
T 2onk_A            2 FLKVRAEKRLGN----FRLN-VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE-VRLNGADITPLPPERRGIGF   74 (240)
T ss_dssp             CEEEEEEEEETT----EEEE-EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE-EEETTEECTTSCTTTSCCBC
T ss_pred             EEEEEEEEEeCC----EEee-eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEECCcCchhhCcEEE
Confidence            678999999953    4899 9999999 999999999999999999999998776543 33332110       00011


Q ss_pred             ccCC-CCCCCch-------------HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640          99 IVPR-GGENCVA-------------IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus        99 ~~~~-~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                      .... ......+             .....+.+.+.+..   +.+....+..+.+|||||+||++||||++.        
T Consensus        75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  151 (240)
T 2onk_A           75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK---LGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD  151 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHT---TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred             EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHH---cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            1000 0000000             00001112122211   122222344577999999999999999976        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                   +.+.+.+.....+.++|.++||.+
T Consensus       152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~  188 (240)
T 2onk_A          152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI  188 (240)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                         455555554433677899999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.85  E-value=6.4e-23  Score=169.31  Aligned_cols=57  Identities=14%  Similarity=-0.007  Sum_probs=51.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      -++++||++.|++.  ++|++ +||++++|++++|+||||||||||+++|+|++.|..+.
T Consensus        21 ~l~~~~l~~~y~~~--~vL~~-isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~   77 (279)
T 2ihy_A           21 LIQLDQIGRMKQGK--TILKK-ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT   77 (279)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEEEEeEEEEECCE--EEEEe-eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence            48999999999764  79999 99999999999999999999999999999998776543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.84  E-value=2.2e-22  Score=164.75  Aligned_cols=144  Identities=13%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             cccccceeecccc--ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc------cccc
Q psy9640          26 RDLEGVIKQYVNM--VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR------VHAD   97 (199)
Q Consensus        26 i~l~nvs~~y~~~--~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~------~~~~   97 (199)
                      ++++|++++|++.  .+++|++ +||+++ |++++|+||||||||||+++|+|++ |..+ .+..++...      ....
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~-vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G-~I~~~g~~~~~~~~~~~i~   77 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLEN-INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG-NIFINGMEVRKIRNYIRYS   77 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEE-EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEE-EEEETTEEGGGCSCCTTEE
T ss_pred             EEEEEEEEEeCCCCccceeEEe-eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCc-EEEECCEECcchHHhhheE
Confidence            6789999999751  1379999 999999 9999999999999999999999998 6544 443333110      0011


Q ss_pred             --cccCCCCCCCchHHHHH----------HHHHHHHhcCceeecC-CceeeecceecCCeeeeeeEEeccch--------
Q psy9640          98 --IIVPRGGENCVAIDLIV----------QHIHSQLQAGVSVDMP-QGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus        98 --~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~~-~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                        +...... .....+.+.          +.+.+.+.   ...+. ...+..+.+|||||+||++||||++.        
T Consensus        78 ~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~---~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD  153 (263)
T 2pjz_A           78 TNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLK---ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD  153 (263)
T ss_dssp             ECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHH---HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             EEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHH---HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence              1111111 111111111          01111111   11222 22344677999999999999999976        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                   +.+.+.+.. .   ++|.++||.+.
T Consensus       154 EPts~LD~~~~~~l~~~L~~~~-~---tviivtHd~~~  187 (263)
T 2pjz_A          154 EPFENVDAARRHVISRYIKEYG-K---EGILVTHELDM  187 (263)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHSC-S---EEEEEESCGGG
T ss_pred             CCccccCHHHHHHHHHHHHHhc-C---cEEEEEcCHHH
Confidence                         334444332 2   88999998654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.84  E-value=1.8e-22  Score=165.70  Aligned_cols=63  Identities=11%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CCeeeeecccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VPWVTLLSMDS   90 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~~~~~i~~d~   90 (199)
                      -++++||+++|.+.  ++|++ +||++++|++++|+||||||||||+++|+|++. ++..|.+..++
T Consensus        20 ~l~~~~l~~~y~~~--~vl~~-vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g   83 (267)
T 2zu0_C           20 MLSIKDLHVSVEDK--AILRG-LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG   83 (267)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred             eEEEEeEEEEECCE--EEEEe-eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence            48999999999654  79999 999999999999999999999999999999852 34445554443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.82  E-value=8e-22  Score=160.28  Aligned_cols=138  Identities=7%  Similarity=0.103  Sum_probs=89.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------HA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~~   96 (199)
                      ++++|++++      ++|++ +||++++|++++|+||||||||||+++|+|++.+.  |.+..++....         ..
T Consensus         5 l~~~~l~~~------~vl~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~g~~~~~~~~~~~~~~i   75 (249)
T 2qi9_C            5 MQLQDVAES------TRLGP-LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFAGQPLEAWSATKLALHR   75 (249)
T ss_dssp             EEEEEEEET------TTEEE-EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETTEEGGGSCHHHHHHHE
T ss_pred             EEEEceEEE------EEEee-eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEECCEECCcCCHHHHhceE
Confidence            788999987      58999 99999999999999999999999999999998776  55555432110         00


Q ss_pred             ccc-cCCCCCCC-c-------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          97 DII-VPRGGENC-V-------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        97 ~~~-~~~~~~~~-~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ... ........ .             ..+.+.+.+ +.+      .+....+..+.+|||||+|||+||||++.     
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l-~~~------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~  148 (249)
T 2qi9_C           76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA-GAL------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA  148 (249)
T ss_dssp             EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHH-HHT------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred             EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHH-HHc------CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence            111 11111000 0             111122222 211      22222234577999999999999999975     


Q ss_pred             -----------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                             +.+.+.+.... +.++|.++||.+
T Consensus       149 ~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~  194 (249)
T 2qi9_C          149 NPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN  194 (249)
T ss_dssp             CTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence                                   33344444333 678899999855

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.81  E-value=5.5e-22  Score=164.56  Aligned_cols=149  Identities=13%  Similarity=0.073  Sum_probs=77.3

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVH   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~   95 (199)
                      ..++++||++.+    +++|++ +||++++|++++|+||||||||||+++|+|++.+..+        ++++++......
T Consensus        39 ~~l~~~~l~~~~----~~vl~~-isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~  113 (290)
T 2bbs_A           39 DSLSFSNFSLLG----TPVLKD-INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG  113 (290)
T ss_dssp             -----------C----CCSEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred             ceEEEEEEEEcC----ceEEEe-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence            359999999863    379999 9999999999999999999999999999998876432        223332211000


Q ss_pred             cccccCCCCCCCchHHHHHHHHHHHHhc-CceeecCCcee----eecceecCCeeeeeeEEeccch--------------
Q psy9640          96 ADIIVPRGGENCVAIDLIVQHIHSQLQA-GVSVDMPQGYT----YEGKRCAVSKICGVSILRAGET--------------  156 (199)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~----~~g~~lSgGq~QrvaiaRA~~~--------------  156 (199)
                      .-........  .......+.+ ..... .....++.+++    ..+.+|||||+||++||||++.              
T Consensus       114 tv~enl~~~~--~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L  190 (290)
T 2bbs_A          114 TIKENIIGVS--YDEYRYRSVI-KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL  190 (290)
T ss_dssp             BHHHHHHTTC--CCHHHHHHHH-HHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred             cHHHHhhCcc--cchHHHHHHH-HHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC
Confidence            0000000000  0001111111 11110 01112232222    2457899999999999999975              


Q ss_pred             ---hHHHHHhh-ccc--cceeEEEEEeCCC
Q psy9640         157 ---MEQAVHDV-CKD--IRIGKILIQTNKA  180 (199)
Q Consensus       157 ---~~~~l~~~-~p~--~~~~~~~~~~~~~  180 (199)
                         ....+.+. +..  .+.++|.++||.+
T Consensus       191 D~~~~~~i~~~ll~~~~~~~tviivtHd~~  220 (290)
T 2bbs_A          191 DVLTEKEIFESCVCKLMANKTRILVTSKME  220 (290)
T ss_dssp             CHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred             CHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence               33333332 111  2568899999854

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.75  E-value=1.9e-19  Score=160.74  Aligned_cols=145  Identities=13%  Similarity=0.065  Sum_probs=90.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG  104 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~  104 (199)
                      -++++|+++.|.+.   .|+. ++|++.+|++++|+||||||||||+++|+|.+.+..+.+. ...   ....+......
T Consensus       287 ~l~~~~l~~~~~~~---~l~~-~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~-~~~---~i~~v~Q~~~~  358 (538)
T 1yqt_A          287 LVTYPRLVKDYGSF---RLEV-EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE-WDL---TVAYKPQYIKA  358 (538)
T ss_dssp             EEEECCEEEEETTE---EEEE-CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC-CCC---CEEEECSSCCC
T ss_pred             EEEEeeEEEEECCE---EEEe-CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECc---eEEEEecCCcC
Confidence            38899999998642   5788 8999999999999999999999999999998876543221 110   00001111110


Q ss_pred             CCCchHHHHHH-----------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------
Q psy9640         105 ENCVAIDLIVQ-----------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------  156 (199)
Q Consensus       105 ~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------  156 (199)
                      .......+...           .+...+   ....+....+..+.+|||||+|||+||||++.                 
T Consensus       359 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~  435 (538)
T 1yqt_A          359 DYEGTVYELLSKIDASKLNSNFYKTELL---KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE  435 (538)
T ss_dssp             CCSSBHHHHHHHHHHHHHTCHHHHHHTT---TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred             CCCCcHHHHHHhhhccCCCHHHHHHHHH---HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence            01111111111           111111   11222222344677999999999999999975                 


Q ss_pred             ----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                          +.+.+.++..+.+.++|+|+||-+
T Consensus       436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~  463 (538)
T 1yqt_A          436 QRLAVSRAIRHLMEKNEKTALVVEHDVL  463 (538)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence                455555554344678899999855

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.75  E-value=1.8e-19  Score=162.74  Aligned_cols=145  Identities=14%  Similarity=0.077  Sum_probs=90.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG  104 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~  104 (199)
                      -++++|+++.|.+.   .|+. +++++.+|++++|+||||||||||+++|+|++.+..+.+. .+.   ....+......
T Consensus       357 ~l~~~~l~~~~~~~---~l~~-~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~-~~~---~i~~v~Q~~~~  428 (607)
T 3bk7_A          357 LVEYPRLVKDYGSF---KLEV-EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE-WDL---TVAYKPQYIKA  428 (607)
T ss_dssp             EEEECCEEEECSSC---EEEE-CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC-CCC---CEEEECSSCCC
T ss_pred             EEEEeceEEEecce---EEEe-cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE-Eee---EEEEEecCccC
Confidence            48899999999643   5788 8999999999999999999999999999998876543221 110   00001111100


Q ss_pred             CCCch-HHHHH----------HHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----------------
Q psy9640         105 ENCVA-IDLIV----------QHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----------------  156 (199)
Q Consensus       105 ~~~~~-~~~~~----------~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----------------  156 (199)
                      ....+ .+.+.          +.+.+.+.   .+.+....+..+.+|||||+|||+||||+..                 
T Consensus       429 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~  505 (607)
T 3bk7_A          429 EYEGTVYELLSKIDSSKLNSNFYKTELLK---PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE  505 (607)
T ss_dssp             CCSSBHHHHHHHHHHHHHHCHHHHHHTHH---HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred             CCCCcHHHHHHhhhccCCCHHHHHHHHHH---HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence            00001 11110          00101111   1222233344677999999999999999975                 


Q ss_pred             ----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                          +.+.+.++....+.++|+++||-+
T Consensus       506 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~  533 (607)
T 3bk7_A          506 QRLAVSRAIRHLMEKNEKTALVVEHDVL  533 (607)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence                445555544344678899999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.75  E-value=2.8e-19  Score=159.55  Aligned_cols=146  Identities=11%  Similarity=0.050  Sum_probs=91.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccCCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGG  104 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~~~~  104 (199)
                      .++++|+++.|.+.   .+.. +++++++|++++|+||||||||||+++|+|++.+..+.+. .++....  ........
T Consensus       269 ~l~~~~l~~~~~~~---~l~~-~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~~~i~--~~~q~~~~  341 (538)
T 3ozx_A          269 KMKWTKIIKKLGDF---QLVV-DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT-PEKQILS--YKPQRIFP  341 (538)
T ss_dssp             EEEECCEEEEETTE---EEEE-CCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE-SSCCCEE--EECSSCCC
T ss_pred             eEEEcceEEEECCE---EEEe-ccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCeeeE--eechhccc
Confidence            47889999998653   4677 7999999999999999999999999999999887654332 2111000  00000000


Q ss_pred             CCCch-HHHHHH-----------HHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640         105 ENCVA-IDLIVQ-----------HIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------  156 (199)
Q Consensus       105 ~~~~~-~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------  156 (199)
                      ..... .+.+..           .+.+.+   ..+.+....+..+.+|||||+|||+||||+..                
T Consensus       342 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~  418 (538)
T 3ozx_A          342 NYDGTVQQYLENASKDALSTSSWFFEEVT---KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV  418 (538)
T ss_dssp             CCSSBHHHHHHHHCSSTTCTTSHHHHHTT---TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             ccCCCHHHHHHHhhhhccchhHHHHHHHH---HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence            00000 111100           010111   11122222344678999999999999999965                


Q ss_pred             -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                           +.+.+.++..+.+.++|+|+||-+
T Consensus       419 ~~~~~i~~~l~~l~~~~g~tvi~vsHdl~  447 (538)
T 3ozx_A          419 EERYIVAKAIKRVTRERKAVTFIIDHDLS  447 (538)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence                 555666665555788899999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.73  E-value=4.9e-19  Score=159.86  Aligned_cols=143  Identities=10%  Similarity=0.079  Sum_probs=88.8

Q ss_pred             ccceeeccccccccccccccCCCCCC-----eEEEEecCCCCcHHHHHHHHHHHcCCCee--------eeecccchhccc
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEP-----FVIGICGGSASGKTTVATKIIESLNVPWV--------TLLSMDSFYRVH   95 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g-----~iv~IvG~SGsGKSTLl~~L~~~l~~~~~--------~~i~~d~~~~~~   95 (199)
                      +++++.|++. ..++++ ++|++.+|     ++++|+||||||||||+++|+|++.+..+        ++++++......
T Consensus       350 ~~~~~~y~~~-~~~l~~-vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~  427 (608)
T 3j16_B          350 ASRAFSYPSL-KKTQGD-FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP  427 (608)
T ss_dssp             SSSCCEECCE-EEECSS-CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred             cceeEEecCc-ccccCc-eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence            6788888754 357899 99999998     78999999999999999999999877643        223322110000


Q ss_pred             ---cccccCCCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----------------
Q psy9640          96 ---ADIIVPRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----------------  156 (199)
Q Consensus        96 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----------------  156 (199)
                         ...................+.+ +.+      .+....+..+.+|||||+|||+||||+..                
T Consensus       428 ~tv~e~~~~~~~~~~~~~~~~~~~l-~~l------~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~  500 (608)
T 3j16_B          428 GTVRQLFFKKIRGQFLNPQFQTDVV-KPL------RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS  500 (608)
T ss_dssp             SBHHHHHHHHCSSTTTSHHHHHHTH-HHH------TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH
T ss_pred             ccHHHHHHHHhhcccccHHHHHHHH-HHc------CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence               0000000000000111111112 222      22222344567899999999999999975                


Q ss_pred             -----hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                           +.+.+.++..+.+.++|+|+||-+
T Consensus       501 ~~~~~i~~ll~~l~~~~g~tviivtHdl~  529 (608)
T 3j16_B          501 EQRIICSKVIRRFILHNKKTAFIVEHDFI  529 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence                 445555655555788899999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.72  E-value=1.1e-18  Score=157.65  Aligned_cols=53  Identities=21%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      +|++++|++. ..++++ +| ++++|++++|+||||||||||+++|+|.+.|..+.
T Consensus        95 ~~ls~~yg~~-~~~l~~-vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A           95 EDCVHRYGVN-AFVLYR-LP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             GSEEEECSTT-CCEEEC-CC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCeEEEECCC-CeeeCC-CC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            8999999654 248999 99 99999999999999999999999999998776443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.72  E-value=8.7e-19  Score=156.43  Aligned_cols=55  Identities=22%  Similarity=0.316  Sum_probs=45.7

Q ss_pred             ccc-ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          26 RDL-EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        26 i~l-~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++ +||+++|++. ..++.+ +| ++++|++++|+||||||||||+++|+|.+.|..+
T Consensus        21 ~~~~~~ls~~yg~~-~~~l~~-vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G   76 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN-AFVLYR-LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC   76 (538)
T ss_dssp             ---CCCEEEECSTT-CCEEEC-CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             hhHhcCcEEEECCc-cccccC-cC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            455 6899999654 258999 99 9999999999999999999999999998876543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.72  E-value=9.2e-19  Score=145.95  Aligned_cols=115  Identities=9%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccccC-CC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-RG  103 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~~~-~~  103 (199)
                      .|+++||+|.|+   .++|++ +++++++|++++|+||||||||||+++|+|++.......++++.....  ..... +.
T Consensus       101 ~i~~~~vs~~y~---~~vL~~-vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q~~~lf~--~ti~~~ni  174 (305)
T 2v9p_A          101 FFNYQNIELITF---INALKL-WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWL--ASLADTRA  174 (305)
T ss_dssp             HHHHTTCCHHHH---HHHHHH-HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGTTSGGGG--GGGTTCSC
T ss_pred             eEEEEEEEEEcC---hhhhcc-ceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEEEecCcccccc--ccHHHHhh
Confidence            489999999997   379999 999999999999999999999999999999983222222233322111  11111 11


Q ss_pred             CCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccchhH
Q psy9640         104 GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETME  158 (199)
Q Consensus       104 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~  158 (199)
                      ...+...+.+.+.+ ...       +|.+++  |..||||||||   |||++.-+
T Consensus       175 ~~~~~~~~~~~~~i-~~~-------L~~gld--g~~LSgGqkQR---ARAll~~p  216 (305)
T 2v9p_A          175 ALVDDATHACWRYF-DTY-------LRNALD--GYPVSIDRKHK---AAVQIKAP  216 (305)
T ss_dssp             EEEEEECHHHHHHH-HHT-------TTGGGG--TCCEECCCSSC---CCCEECCC
T ss_pred             ccCccccHHHHHHH-HHH-------hHccCC--ccCcCHHHHHH---HHHHhCCC
Confidence            00011112232323 110       344444  77999999999   99988643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.71  E-value=1e-18  Score=164.11  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      ++++|++++|++..+++|++ +||++.+|++++|+||||||||||+++|+|.+.+..+.
T Consensus       672 L~v~nLs~~Y~g~~~~iL~d-VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~  729 (986)
T 2iw3_A          672 VKVTNMEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE  729 (986)
T ss_dssp             EEEEEEEECCTTCSSCSEEE-EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEE
T ss_pred             EEEEeeEEEeCCCCceeeec-cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            88999999997543579999 99999999999999999999999999999998776543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=8e-18  Score=151.97  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +|++++|... ...+++ ++ .+++|++++|+||||||||||+++|+|++.|..+
T Consensus        81 ~~~~~~Y~~~-~~~l~~-l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G  132 (608)
T 3j16_B           81 AHVTHRYSAN-SFKLHR-LP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG  132 (608)
T ss_dssp             TTEEEECSTT-SCEEEC-CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             CCeEEEECCC-ceeecC-CC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            4788888654 245666 44 6899999999999999999999999999877654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.68  E-value=1.3e-17  Score=139.65  Aligned_cols=121  Identities=21%  Similarity=0.227  Sum_probs=81.3

Q ss_pred             ccCcccccceeeccccccccccccccC-----------------------CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAP-----------------------SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl-----------------------~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ...|+++||++.|.    +++++ +++                       .+++|+++||+||||||||||+++|++.+.
T Consensus        41 ~~~i~~~~v~~~y~----p~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           41 GEQIDLLEVEEVYL----PLARL-IHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             TCCCCHHHHHHTHH----HHHHH-HHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEeeehhhhhh----hHHHH-HHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            44699999999994    34444 443                       289999999999999999999999999986


Q ss_pred             C----Ceeeeecccchhcccccccc---C--CCCCCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeE
Q psy9640          80 V----PWVTLLSMDSFYRVHADIIV---P--RGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSI  150 (199)
Q Consensus        80 ~----~~~~~i~~d~~~~~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvai  150 (199)
                      +    ..++++++|+++........   .  .+.....+.+.+.+.+ +.+..+.       .+....++||||+||+++
T Consensus       116 ~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L-~~l~~~~-------~~~~~~~lS~G~~qRv~~  187 (312)
T 3aez_A          116 RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV-TSVKSGS-------DYACAPVYSHLHYDIIPG  187 (312)
T ss_dssp             TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH-HHHHTTC-------SCEEEEEEETTTTEEEEE
T ss_pred             ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH-HHhCCCc-------ccCCcccCChhhhhhhhh
Confidence            5    35788999887654311111   1  1111122334455555 3332211       122345799999999999


Q ss_pred             Eeccch
Q psy9640         151 LRAGET  156 (199)
Q Consensus       151 aRA~~~  156 (199)
                      |||++.
T Consensus       188 a~al~~  193 (312)
T 3aez_A          188 AEQVVR  193 (312)
T ss_dssp             EEEEEC
T ss_pred             HHHhcc
Confidence            999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.65  E-value=1.1e-17  Score=157.19  Aligned_cols=50  Identities=18%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .+...|+++.|++.  .+|++ +||++++|++++|+||||||||||+++|+|.
T Consensus       435 ~L~~~~ls~~yg~~--~iL~~-vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          435 DLCNCEFSLAYGAK--ILLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             eeEEeeEEEEECCE--EeEec-ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47777899999764  79999 9999999999999999999999999999963

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.62  E-value=2.5e-17  Score=150.37  Aligned_cols=41  Identities=20%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             cceeec-cccccccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640          30 GVIKQY-VNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        30 nvs~~y-~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl   71 (199)
                      |+++.| .+...++|++ |||++++|++++|+||||||||||+
T Consensus        20 ~~~~~~~~~~~~~~L~~-vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           20 HMDKIIVKGARAHNLKN-IDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             --CEEEEEEECSTTCCS-EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             CcceEEEcCCCccceec-cEEEECCCCEEEEECCCCCCHHHHh
Confidence            444444 2223478999 9999999999999999999999997

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.59  E-value=1.2e-16  Score=142.64  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=39.6

Q ss_pred             ccceeeccccccccccccccCC-CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPS-MVEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~-i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      ++++.+|...   .++- ..+. +++|+++||+||||||||||+|+|+|.+.|..+.
T Consensus         3 ~~~~~~~~~~---~f~l-~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~   55 (538)
T 3ozx_A            3 GEVIHRYKVN---GFKL-FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD   55 (538)
T ss_dssp             CCEEEESSTT---SCEE-ECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred             CCCceecCCC---ceee-cCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            3567788543   3344 3444 4699999999999999999999999998776543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.59  E-value=1.1e-16  Score=146.06  Aligned_cols=48  Identities=17%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ...+..+.+.+....+|++ +||+|++|++++|+||||||||||+++|+
T Consensus       322 ~~~~~~~~~~~~~~~~L~~-vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          322 RPDGRWLEVVGAREHNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             CCCSCEEEEEEECSTTCCS-EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccceeecCcccccccc-ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            3445556665544578999 99999999999999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.56  E-value=9.9e-18  Score=146.96  Aligned_cols=49  Identities=20%  Similarity=0.080  Sum_probs=43.4

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      -++++||++.|+        + +++++++|++++|+||||||||||+|+|+|++.+..
T Consensus       118 mi~~~nl~~~y~--------~-vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~  166 (460)
T 2npi_A          118 MKYIYNLHFMLE--------K-IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFN  166 (460)
T ss_dssp             HHHHHHHHHHHH--------H-HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhhehhh--------c-CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence            488999999884        5 899999999999999999999999999999875443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.54  E-value=9e-16  Score=117.36  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=27.1

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      +||++++|++++|+||||||||||++++.
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence            78999999999999999999999999753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.46  E-value=9.9e-14  Score=111.62  Aligned_cols=101  Identities=29%  Similarity=0.389  Sum_probs=55.7

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-------eeeeecccchhccccccc---cCCC---CCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP-------WVTLLSMDSFYRVHADII---VPRG---GEN  106 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-------~~~~i~~d~~~~~~~~~~---~~~~---~~~  106 (199)
                      .++|++ +||++++|+++||+||||||||||+++|++.++..       .+++++++.++.......   ....   ..+
T Consensus        12 ~~~l~~-isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~   90 (245)
T 2jeo_A           12 DLGTEN-LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDH   90 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTS
T ss_pred             ceeecc-eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCC
Confidence            478999 99999999999999999999999999999987643       355777776654222110   0111   111


Q ss_pred             C--chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeE
Q psy9640         107 C--VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSI  150 (199)
Q Consensus       107 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~Qrvai  150 (199)
                      +  .+.+.+.+.+ ..+...        .......+|+||+||+++
T Consensus        91 ~~~~~~~~~~~~L-~~l~~~--------~~~~~~~ls~g~~~r~~~  127 (245)
T 2jeo_A           91 PDAFDNDLMHRTL-KNIVEG--------KTVEVPTYDFVTHSRLPE  127 (245)
T ss_dssp             GGGBCHHHHHHHH-HHHHTT--------CCEEECCEETTTTEECSS
T ss_pred             cccccHHHHHHHH-HHHHCC--------CCeecccccccccCccCc
Confidence            1  2234444444 222211        122344789999999976

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.45  E-value=6.2e-14  Score=110.10  Aligned_cols=102  Identities=16%  Similarity=0.171  Sum_probs=67.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhcccccccc-----CCCCCCCchHHHHHHHHHHHHhc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIV-----PRGGENCVAIDLIVQHIHSQLQA  123 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~  123 (199)
                      .++|++++|+||||||||||+++|++.+.+  ...+.+++|+++........     .+......+.+.+...+ ..+..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~   97 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLC-HALKH   97 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHH-HHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHH-HHHhc
Confidence            578999999999999999999999999875  36788999987653322111     01111122334444444 44444


Q ss_pred             CceeecCCceeeecceecCCeeeeeeEE-eccc
Q psy9640         124 GVSVDMPQGYTYEGKRCAVSKICGVSIL-RAGE  155 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgGq~Qrvaia-RA~~  155 (199)
                      ...+..|.+ + .+..+|+||+|+++++ |+++
T Consensus        98 ~~~i~~p~~-d-~~~~~~~g~~~~v~~~~~~~i  128 (208)
T 3c8u_A           98 QERVIYPLF-D-RARDIAIAGAAEVGPECRVAI  128 (208)
T ss_dssp             CSCEEEEEE-E-TTTTEEEEEEEEECTTCCEEE
T ss_pred             CCceecccC-C-ccccCCCCCceEEcCCCcEEE
Confidence            445555532 2 3456799999999997 7754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.43  E-value=6.3e-14  Score=111.17  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=25.6

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|++ +||++++|++++|+||||||||||+++|+|.+
T Consensus        11 ~~l~~-isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           11 SSGLV-PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccccC-CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57899 99999999999999999999999999999988

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=2.9e-14  Score=112.64  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.2

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+|++ +    ++|++++|+||||||||||+++|+|+ .+.
T Consensus        14 ~~l~~-i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~   48 (208)
T 3b85_A           14 HYVDA-I----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ   48 (208)
T ss_dssp             HHHHH-H----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred             HHHHh-c----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence            67888 5    79999999999999999999999998 543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.37  E-value=1.9e-13  Score=128.04  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=33.0

Q ss_pred             eeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640          32 IKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        32 s~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl   71 (199)
                      .+.+.+.....|++ +||++++|++++|+|+||||||||+
T Consensus       589 ~l~v~~~~~~~Lk~-Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          589 SLKIKGVRHNNLKN-IDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             EEEEEEECSTTCCS-EEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             eEEEeeeccccccc-cceEEcCCcEEEEEccCCCChhhhH
Confidence            34444433468999 9999999999999999999999997

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.34  E-value=1.9e-12  Score=101.27  Aligned_cols=98  Identities=32%  Similarity=0.450  Sum_probs=60.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccccccc------cCCCCCCCchHHHHHHHHHHHHhcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADII------VPRGGENCVAIDLIVQHIHSQLQAG  124 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~  124 (199)
                      .++|++++|+|+||||||||+++|++.+++ .++++++|.++.......      .........+.+.+.+.+ +.+...
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~   80 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHA-QALLRG   80 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHH-HHHHTT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHH-HHHHcC
Confidence            468999999999999999999999998865 577888887654322111      000111122234455555 333333


Q ss_pred             ceeecCCceeeecceecCCe----eeeeeEEeccch
Q psy9640         125 VSVDMPQGYTYEGKRCAVSK----ICGVSILRAGET  156 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq----~QrvaiaRA~~~  156 (199)
                      ..+..|.      ..+|+|+    +||++++|+++.
T Consensus        81 ~~~~~~~------~~~s~g~~~~~~~~~~~~~~li~  110 (211)
T 3asz_A           81 LPVEMPV------YDFRAYTRSPRRTPVRPAPVVIL  110 (211)
T ss_dssp             CCEEECC------EETTTTEECSSCEEECCCSEEEE
T ss_pred             CCcCCCc------ccCcccCCCCCeEEeCCCcEEEE
Confidence            3334443      3578886    478899988754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.34  E-value=9.2e-13  Score=108.99  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-----eeeeecccchhcccccccc------------CCCCCCCchHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP-----WVTLLSMDSFYRVHADIIV------------PRGGENCVAIDL  112 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-----~~~~i~~d~~~~~~~~~~~------------~~~~~~~~~~~~  112 (199)
                      .-.++.+++|+|+||||||||++.|.+.+.+.     .+.++++|+++........            .++.....+.+.
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~  106 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL  106 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence            45678999999999999999999999988652     3344499998765422110            111233345566


Q ss_pred             HHHHHHHHHhcC------ceeecCCceeeecceecCCeeeeeeEEec
Q psy9640         113 IVQHIHSQLQAG------VSVDMPQGYTYEGKRCAVSKICGVSILRA  153 (199)
Q Consensus       113 ~~~~l~~~~~~~------~~~~~~~~~~~~g~~lSgGq~QrvaiaRA  153 (199)
                      +.+.+ ..+..+      ..+..|.+    +..+||||.||+++|++
T Consensus       107 l~~~l-~~l~~g~~t~~~~~v~~p~y----~~~~sgGq~~R~~~a~~  148 (290)
T 1odf_A          107 LQEVL-NTIFNNNEHPDQDTVVLPKY----DKSQFKGEGDRCPTGQK  148 (290)
T ss_dssp             HHHHH-HHHTC------CCEEEECCE----ETTHHHHTCEECSSCEE
T ss_pred             HHHHH-HHhhccCccccCcceeeccC----ccccCCccccccccccc
Confidence            66666 444433      23344443    45789999999998743

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.33  E-value=5.8e-14  Score=130.53  Aligned_cols=46  Identities=22%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHH-HHHHc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATK-IIESL   78 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~-L~~~l   78 (199)
                      -++++|+++       ..|++ +||++++|++++|+|+||||||||++. |+|.+
T Consensus       502 ~L~v~~l~~-------~~L~~-vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          502 WLELNGVTR-------NNLDN-LDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             EEEEEEEEE-------TTEEE-EEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             eEEEEeeee-------ccccc-ceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            367777764       36899 999999999999999999999999996 66654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.32  E-value=1.5e-13  Score=105.48  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=28.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDS   90 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~   90 (199)
                      ++++|+|+||||||||+++|++++.+.  ..|.+..++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            589999999999999999999998765  245555443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.31  E-value=2.5e-13  Score=102.90  Aligned_cols=60  Identities=12%  Similarity=0.052  Sum_probs=48.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      +..+++++.|...  .++++ +||++++|++++|+||||||||||++.|+|.+ +.. |.+..++
T Consensus         8 ~~~~~~~~~~g~~--~~l~~-vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~-G~V~~~g   67 (158)
T 1htw_A            8 IPDEFSMLRFGKK--FAEIL-LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ-GNVKSPT   67 (158)
T ss_dssp             ECSHHHHHHHHHH--HHHHH-HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC-SCCCCCT
T ss_pred             cCCHHHHHHHHHH--HHHhc-cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC-CeEEECC
Confidence            4556677888654  68899 99999999999999999999999999999999 543 4444443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.29  E-value=1.2e-13  Score=116.27  Aligned_cols=49  Identities=27%  Similarity=0.293  Sum_probs=43.6

Q ss_pred             cccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          28 LEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        28 l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +++++| |    .+++++ +++.+++|++++|+||||||||||+++|++++.+..
T Consensus       151 ~~~v~f-y----~~~l~~-l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~  199 (330)
T 2pt7_A          151 YNLLDN-K----EQAISA-IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE  199 (330)
T ss_dssp             TTTSTT-H----HHHHHH-HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred             cCchhh-H----HHHHhh-hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence            778887 6    268889 999999999999999999999999999999987653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=104.04  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=23.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..++|+||||||||||+++|+|...+..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~   30 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK   30 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            4689999999999999999999886643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.25  E-value=1.3e-12  Score=112.24  Aligned_cols=38  Identities=11%  Similarity=0.161  Sum_probs=34.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..+++ ++|++.+| +++|+|+||||||||+++|.++++.
T Consensus        49 ~~l~~-v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           49 ATITQ-LELELGGG-FCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             TTEEE-EEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             cceee-EEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57899 99999999 9999999999999999999888763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.25  E-value=1.7e-12  Score=100.00  Aligned_cols=24  Identities=46%  Similarity=0.583  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +++|+||||||||||+++|+|.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999986

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.24  E-value=1.4e-12  Score=122.16  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ..|++ |||++++|++++|+|+||||||||++.|+
T Consensus       638 ~~Lk~-Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          638 HNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSCCS-EEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccc-ceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            46899 99999999999999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.17  E-value=1.4e-12  Score=112.70  Aligned_cols=42  Identities=17%  Similarity=0.146  Sum_probs=37.8

Q ss_pred             cccccccccCCCCCCe--------------------EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          40 KPAFSTFIAPSMVEPF--------------------VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~--------------------iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..++++ +++++++|+                    +++|+|+||||||||+|+|+|+..+..
T Consensus        36 ~~~l~~-is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~   97 (413)
T 1tq4_A           36 QEILNL-IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE   97 (413)
T ss_dssp             HHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST
T ss_pred             HHHhhh-ccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC
Confidence            368999 999999999                    999999999999999999999876543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.17  E-value=1.9e-11  Score=108.68  Aligned_cols=53  Identities=15%  Similarity=0.150  Sum_probs=41.6

Q ss_pred             cccccceeeccccccccccccccC-CCCCCeEEEEecCCCCcHHHHHHH--HHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAP-SMVEPFVIGICGGSASGKTTVATK--IIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~--L~~~l~~~   81 (199)
                      ++.+++.....+  .++|++ +++ .+++|++++|+||||||||||+++  +.|.+.+.
T Consensus        13 ~~~~~~~~~~~g--~~~Ld~-i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~   68 (525)
T 1tf7_A           13 SEHQAIAKMRTM--IEGFDD-ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD   68 (525)
T ss_dssp             -CCSSCCEECCC--CTTHHH-HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccCC--chhHHH-hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC
Confidence            445555443333  479999 999 999999999999999999999999  56776543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.15  E-value=1.9e-11  Score=101.62  Aligned_cols=38  Identities=29%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.. ++|++++|++++|+|||||||||++++|++.+.+.
T Consensus        90 ~~~-l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~  127 (302)
T 3b9q_A           90 KTE-LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE  127 (302)
T ss_dssp             CCS-CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ccc-cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            356 89999999999999999999999999999998654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.15  E-value=5.9e-12  Score=107.23  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+++ +++.+.+| +.+|+||||||||||+.+|...+
T Consensus        13 ~~~~-~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           13 GLKN-VDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             TEEE-EEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             Cccc-eEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            4567 78888888 78899999999999999998543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.13  E-value=1.3e-11  Score=106.85  Aligned_cols=54  Identities=22%  Similarity=0.147  Sum_probs=43.9

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++++++++.|...  .+|++ + +. .+|.+++|+||||||||||++.|++.+.+...
T Consensus       143 ~~~l~~Lg~~~~~~--~~L~~-l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g  196 (418)
T 1p9r_A          143 RLDLHSLGMTAHNH--DNFRR-L-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSER  196 (418)
T ss_dssp             CCCGGGSCCCHHHH--HHHHH-H-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred             CCCHHHcCCCHHHH--HHHHH-H-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence            46777887777543  57788 6 43 79999999999999999999999999977643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.09  E-value=5.8e-11  Score=98.79  Aligned_cols=30  Identities=23%  Similarity=0.136  Sum_probs=27.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +|++++|+||||||||||+++|++++.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~  130 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG  130 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence            789999999999999999999999997653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.07  E-value=4.7e-11  Score=101.47  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=33.7

Q ss_pred             cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .. ++|++++|++++|+|||||||||++++|++++.+.
T Consensus       148 ~~-l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          148 TE-LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             CS-CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CC-cceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            45 88999999999999999999999999999998654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.07  E-value=8e-11  Score=102.55  Aligned_cols=63  Identities=10%  Similarity=0.066  Sum_probs=53.1

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      .-++++++++.|... ..++++ + |++.+|++++|+||||||||||+++|+|+..+.. |.+..++
T Consensus       130 ~~l~~~~v~~~~~tg-~~vld~-v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~-G~i~~~G  192 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG-VRAINA-L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV-IVVGLIG  192 (438)
T ss_dssp             CTTTSCCCCSBCCCS-CHHHHH-H-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEES
T ss_pred             CceEEeccceecCCC-ceEEee-e-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEec
Confidence            469999999999732 379999 9 9999999999999999999999999999987764 4444433

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.07  E-value=1.6e-11  Score=102.16  Aligned_cols=66  Identities=29%  Similarity=0.422  Sum_probs=54.2

Q ss_pred             ccCcccccceeeccccccccccccccCCC-------------------CCCeEEEEecCCCCcHHHHHHHHHHHcC--CC
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSM-------------------VEPFVIGICGGSASGKTTVATKIIESLN--VP   81 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i-------------------~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~   81 (199)
                      ...|+++||++.|.    +++++ +++.+                   .+|+++||+|+||||||||+++|++.+.  +.
T Consensus        35 ~~~i~~~~v~~~y~----~~~~~-i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~  109 (308)
T 1sq5_A           35 NEDLSLEEVAEIYL----PLSRL-LNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE  109 (308)
T ss_dssp             CTTCCHHHHHHTHH----HHHHH-HHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred             ccccchHhHHHHHH----HHHHH-HHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence            44699999999993    67788 88877                   8999999999999999999999999887  43


Q ss_pred             --eeeeecccchhc
Q psy9640          82 --WVTLLSMDSFYR   93 (199)
Q Consensus        82 --~~~~i~~d~~~~   93 (199)
                        .+.++..|+++.
T Consensus       110 ~G~i~vi~~d~~~~  123 (308)
T 1sq5_A          110 HRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEGGGGBC
T ss_pred             CCeEEEEecCCccC
Confidence              244455677654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.04  E-value=1.4e-10  Score=96.16  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +||+++|.+.  .++++ ++|++      +|+|+||||||||++.|++.
T Consensus         2 ~~l~~~~~~~--~~l~~-~~~~I------~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A            2 SNLPNQVHRK--SVKKG-FEFTL------MVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             -------------------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred             CCCcceECCE--EEEcC-CCEEE------EEECCCCCCHHHHHHHHhCC
Confidence            5788999765  78999 89886      99999999999999999876

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.04  E-value=7.9e-11  Score=98.43  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +++.+.+| +.+|+|+||||||||+..|...+
T Consensus        18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            67777888 99999999999999999998655

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.03  E-value=1.2e-10  Score=98.58  Aligned_cols=56  Identities=18%  Similarity=0.095  Sum_probs=50.0

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .-++++++++.|... ..++++ + |++.+|++++|+|+||||||||+++|+|...+..
T Consensus        44 ~~i~~~~l~~~~~tg-~~ald~-l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~   99 (347)
T 2obl_A           44 DPLLRQVIDQPFILG-VRAIDG-L-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI   99 (347)
T ss_dssp             CSTTCCCCCSEECCS-CHHHHH-H-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred             CCeeecccceecCCC-CEEEEe-e-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence            358999999999732 379999 8 9999999999999999999999999999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.00  E-value=5e-11  Score=96.55  Aligned_cols=55  Identities=18%  Similarity=0.132  Sum_probs=38.1

Q ss_pred             Ccccccc-eeeccccccccccccccCCCCC---CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          25 GRDLEGV-IKQYVNMVKPAFSTFIAPSMVE---PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        25 ~i~l~nv-s~~y~~~~~~~l~~~vsl~i~~---g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -++++|+ +++|.+ ..++|++ +||++.+   |++++|+|+|||||||+++.|++.++..
T Consensus        17 ~l~~~~~~~~~~~~-~~~~l~~-~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~   75 (250)
T 3nwj_A           17 LLETGSLLHSPFDE-EQQILKK-KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT   75 (250)
T ss_dssp             ----------------CHHHHH-HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred             ceEEcceeeEEecC-cchhhhh-hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            5899999 999932 2479999 9999999   9999999999999999999999988754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.99  E-value=3.8e-11  Score=102.11  Aligned_cols=54  Identities=19%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             ccccceee---ccccccccc---------cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          27 DLEGVIKQ---YVNMVKPAF---------STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        27 ~l~nvs~~---y~~~~~~~l---------~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++++++|.   |+....++|         ++ +++.+++|++++|+||||||||||+++|++++.+.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~-l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~  202 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSF-LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD  202 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHH-HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHH-HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            89999998   864223454         88 99999999999999999999999999999988764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.96  E-value=1.7e-10  Score=93.90  Aligned_cols=48  Identities=17%  Similarity=0.170  Sum_probs=41.2

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -++++++++.      ++|++ ++  +++|++++|+||||||||||+++|++++.+.
T Consensus         5 ~~~l~~l~~~------~vl~~-i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~   52 (261)
T 2eyu_A            5 IPEFKKLGLP------DKVLE-LC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT   52 (261)
T ss_dssp             -CCGGGSSCC------THHHH-GG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred             CCChHHCCCH------HHHHH-Hh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence            4677888763      58899 88  8999999999999999999999999988654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.94  E-value=4.1e-10  Score=86.33  Aligned_cols=29  Identities=21%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+++|++++|+|+|||||||++++|++..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence            57899999999999999999999999873

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.92  E-value=2e-10  Score=96.84  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=48.1

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -++++++++.|...  .++++ +++++.+|++++|+|+||||||||+++|++.+.+
T Consensus        29 ~ie~~~~~~~~~~~--~~l~~-i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           29 LAESRRADHRAAVR--DLIDA-VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHTCSSHHHHHHHH--HHHHH-HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHeeCCcccccChH--HHHHh-CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            48999999999654  68999 9999999999999999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.91  E-value=2.8e-10  Score=98.53  Aligned_cols=51  Identities=22%  Similarity=0.331  Sum_probs=40.8

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeE--EEEecCCCCcHHHHHHHHHHHc
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFV--IGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~i--v~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.+++++ ++.|++.  + +++ +++++++|++  ++|+|+||||||||+++|+|..
T Consensus        14 ~~~l~~~~-~~~y~~~--~-L~~-vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           14 CRTVPLAG-HVGFDSL--P-DQL-VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             ---CCCCC-CC-CC----C-HHH-HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CceEEEee-EEEECCe--e-cCC-CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            34688888 8889765  5 999 9999999999  9999999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.90  E-value=3.8e-10  Score=94.53  Aligned_cols=78  Identities=24%  Similarity=0.454  Sum_probs=52.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCC----Ceeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHHhcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNV----PWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQLQAG  124 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~----~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~  124 (199)
                      ..++||+||||||||||+++|.+++..    ..++++.+|+++.......     ...+.....+.+.+.+.+ ..+..+
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L-~~L~~g  170 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVL-NAIKSG  170 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHH-HHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHH-Hhhhcc
Confidence            359999999999999999999999863    3577889999875433221     112223344556777777 555555


Q ss_pred             c-eeecCCc
Q psy9640         125 V-SVDMPQG  132 (199)
Q Consensus       125 ~-~~~~~~~  132 (199)
                      . .+..|.+
T Consensus       171 ~~~v~~P~y  179 (321)
T 3tqc_A          171 QRNVRIPVY  179 (321)
T ss_dssp             CSSEEEEEE
T ss_pred             ccccccchh
Confidence            4 5666654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.86  E-value=1.3e-09  Score=84.42  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |+++++|++++|+||||||||||+++|++.+.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            56788999999999999999999999999863

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.86  E-value=1.2e-09  Score=85.47  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +++++   .++++|++++|+||||||||||+++|+|++.
T Consensus        10 ~~~~~---~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           10 PTARG---QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             cCCCC---CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            56666   5899999999999999999999999999984

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.84  E-value=5.2e-10  Score=91.54  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=35.0

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++++ +++.+++|  ++|.||||||||||+++|++.+++.
T Consensus        34 ~~l~~-~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~   71 (274)
T 2x8a_A           34 DQFKA-LGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLN   71 (274)
T ss_dssp             HHHHH-TTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred             HHHHH-cCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence            67889 99999999  9999999999999999999988764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.83  E-value=1.6e-10  Score=108.40  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=34.1

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++ ++|++++|++++|+|||||||||++|++++.
T Consensus       660 ~~V~nd-vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          660 QYVPNN-TDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SSCCEE-EEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ceeccc-ccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            468899 9999999999999999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.82  E-value=9e-10  Score=87.38  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH-HHcC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII-ESLN   79 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~-~~l~   79 (199)
                      +...+ +||++++|++++|+||||||||||+++|+ +.+.
T Consensus        15 ~~~~~-~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           15 QTQGP-GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             cccCC-CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            44577 99999999999999999999999999999 8864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.82  E-value=6.6e-10  Score=98.68  Aligned_cols=50  Identities=16%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +++++++..|+.     |+..++..+.+|++++|+|+||||||||++.+++...+
T Consensus       258 ~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~  307 (525)
T 1tf7_A          258 SSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA  307 (525)
T ss_dssp             CCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             cccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            455556555432     23313568999999999999999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=3.5e-09  Score=82.12  Aligned_cols=44  Identities=25%  Similarity=0.229  Sum_probs=27.5

Q ss_pred             cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          38 MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        38 ~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ....++++ +||++++|.+++|+|+|||||||+++.|++.++...
T Consensus        10 ~~~~~~~~-~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~   53 (199)
T 3vaa_A           10 GVDLGTEN-LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF   53 (199)
T ss_dssp             ---------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             CCCCCCCc-eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence            34578999 999999999999999999999999999999886543

>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*

Probab=98.79  E-value=6.5e-09  Score=82.25  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=61.8

Q ss_pred             ceeecCCceeeecceecC-CeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCC-------CCchhhhhcCCCCcc
Q psy9640         125 VSVDMPQGYTYEGKRCAV-SKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKAT-------DEPELYYLRLPKDIK  196 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSg-Gq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~p~~~~  196 (199)
                      ..++.|.+..+.+..+.+ .+.--|+|.||++.|.+++++++|++++|+|+++||..+       .+|+.||.|+| ++.
T Consensus        52 ~~v~TP~g~~~~~~~~~~~~~i~iV~IlRaG~~m~~gl~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~p~~~y~klP-~i~  130 (216)
T 1xtt_A           52 VEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIP-DIR  130 (216)
T ss_dssp             EEEECTTSCEEEEEECGGGGSEEEEEEETTTHHHHHHHHHHCTTCEEEEEEEEECCCCCSSCCSCCCEEEEEEECC-CCC
T ss_pred             EEEECCCccEecceEecCCCcEEEEeecCCcHHHHHHHHHHcccCccceEEEEECCCcccccccccCceEeeccCC-Ccc
Confidence            456677764444445676 677889999999999999999999999999999999988       89999999999 776


Q ss_pred             CC
Q psy9640         197 DY  198 (199)
Q Consensus       197 ~~  198 (199)
                      ++
T Consensus       131 ~~  132 (216)
T 1xtt_A          131 AK  132 (216)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.78  E-value=2.1e-09  Score=94.50  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=37.6

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .+|++ ++|++++ ++++|+||||||||||+++|+|++.+..+
T Consensus        18 ~~l~~-vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   58 (483)
T 3euj_A           18 NGFFA-RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT   58 (483)
T ss_dssp             TTEEE-EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred             ccccc-eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            57899 9999999 99999999999999999999999876543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.77  E-value=1.4e-09  Score=92.25  Aligned_cols=38  Identities=13%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC-CC
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN-VP   81 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~-~~   81 (199)
                      .+++ +++.+ +|++++|+|+||||||||+++|+|... +.
T Consensus       205 gl~~-L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~  243 (358)
T 2rcn_A          205 GLKP-LEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEIL  243 (358)
T ss_dssp             THHH-HHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred             CHHH-HHHhc-CCCEEEEECCCCccHHHHHHHHhccccccc
Confidence            4566 66654 799999999999999999999999876 44

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.74  E-value=2.7e-09  Score=82.82  Aligned_cols=48  Identities=21%  Similarity=0.133  Sum_probs=35.4

Q ss_pred             ccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +|+++++...  ...+. .++..++|++++|+|+|||||||+++.|++.+.
T Consensus         3 ~~~~~~~~~~--~~~~~-~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A            3 TNIKWHECSV--EKVDR-QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             -------CCC--CHHHH-HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCccccccc--CHHHH-HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3555555333  56677 788889999999999999999999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.74  E-value=2.1e-09  Score=83.31  Aligned_cols=47  Identities=11%  Similarity=0.133  Sum_probs=33.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++++|+++.|..   +++++   |.+.+|..++|+|+||||||||++.|+|..
T Consensus         4 l~~~~~~~~~~~---~~l~~---~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A            4 LNYQQTHFVMSA---PDIRH---LPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             -------CEEEE---SSGGG---SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             hhhhhhhheeec---CCHhH---CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            789999999962   45555   788999999999999999999999998765

>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1

Probab=98.74  E-value=5.8e-09  Score=82.54  Aligned_cols=71  Identities=28%  Similarity=0.434  Sum_probs=63.8

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.|..++|.+---|+|.||++.|.+++.+++|++.+|+|+++||..+ +|+.||.++| +++++
T Consensus        60 ~~V~TP~g-~~~g~~~~~~~i~~V~IlRaG~~m~~~l~~~ip~a~vg~i~~~Rd~~t-~p~~~~~~lP-~i~~~  130 (217)
T 3dmp_A           60 KRVETPLV-EIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDH-RPVEYLVRLP-DLEDR  130 (217)
T ss_dssp             EEEECSSC-EEEEEEECGGGEEEEEEETTTHHHHHHHHHHCTTSEECEEECSCCCSS-SCCCSEEECC-CCTTC
T ss_pred             EEEECCCe-EEEEEEecCCcEEEEEecccchHHHHHHHHhCcCCceeEEEEEECCCC-CcEEEeecCC-CCCCC
Confidence            45677877 667888887788889999999999999999999999999999999999 9999999999 87764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.73  E-value=7.3e-09  Score=82.12  Aligned_cols=33  Identities=12%  Similarity=0.241  Sum_probs=26.8

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .-.+++|++++|+||||||||||+++|+|.+.+
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            447899999999999999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.66  E-value=1.1e-08  Score=89.91  Aligned_cols=38  Identities=26%  Similarity=0.310  Sum_probs=34.6

Q ss_pred             ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -++ ++|++.+|++++|+|+||||||||+++|++++.+.
T Consensus       283 ~~~-Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          283 DEP-LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             BCC-CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCC-ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            367 89999999999999999999999999999998654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.66  E-value=1.2e-08  Score=86.49  Aligned_cols=39  Identities=23%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             ccccccCCCCC--CeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          43 FSTFIAPSMVE--PFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        43 l~~~vsl~i~~--g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ... |++.+.+  |+.++|+|+||||||||+++|+|++.+..
T Consensus       158 ~~~-v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          158 WKF-IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             GGG-SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hhh-CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            344 9999999  99999999999999999999999998765

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.65  E-value=3.9e-09  Score=99.31  Aligned_cols=35  Identities=14%  Similarity=-0.014  Sum_probs=32.4

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      ..++++ ++|++.+|++++|+|||||||||++|+++
T Consensus       649 ~~v~nd-isl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          649 AFIPND-VYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CCCCEE-EEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             eeeccc-ceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            367889 99999999999999999999999999993

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.63  E-value=1.2e-08  Score=86.55  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=40.9

Q ss_pred             ccceeeccccccccccccccC-------CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          29 EGVIKQYVNMVKPAFSTFIAP-------SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        29 ~nvs~~y~~~~~~~l~~~vsl-------~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++++|.....+.|++ +.+       ...+|.+++|+||||||||||+++|++.+.+.
T Consensus        92 ~~~~iR~~~~~~~~l~~-lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A           92 AGAVFRTIPSKVLTMEE-LGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             EEEEEEEECCSCCCTTT-TTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCCHHH-cCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            35666664444567777 666       66888999999999999999999999988654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.62  E-value=1.2e-08  Score=79.21  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++|++++|+||||||||||+++|++.+.
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5789999999999999999999999874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.61  E-value=1.5e-08  Score=79.48  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      =.+++|++++|+||||||||||+++|++...+
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            37999999999999999999999999996654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.61  E-value=2.2e-08  Score=77.31  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=27.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++.+|++++|+|+|||||||++++|++.+.+
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            5789999999999999999999999998744

>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*

Probab=98.59  E-value=6.1e-08  Score=77.90  Aligned_cols=73  Identities=51%  Similarity=0.881  Sum_probs=63.5

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+..+.|..+. .+.--|+|.||+..|.+++.+++|.+++|+|+++||+.+.++++||.++|.++.++
T Consensus        85 ~~v~TP~g~~~~g~~~~-~~l~~V~ILRaG~~m~~~l~~~ip~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~~r  157 (243)
T 1bd3_D           85 KEVTTPLDVSYHGVSFY-SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRER  157 (243)
T ss_dssp             EEEECTTSCEEEEEEEC-CCEEEEEEETTTHHHHHHHHHHSTTCCEEEEEEEECSSSCCEEEEEEECCTTGGGS
T ss_pred             EEEECCCcceEeeeecc-CcEEEEEEEcchHHHHHHHHHhCCcCeeeeEEEEEcCCCCCeEEEeccCCcccCCC
Confidence            45677777555666664 67778999999999999999999999999999999999999999999999988764

>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}

Probab=98.59  E-value=3.5e-08  Score=77.61  Aligned_cols=73  Identities=30%  Similarity=0.348  Sum_probs=65.1

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.|..+.|.+---|+|.||+..|.+++.+++|.+++++|.++||+.+.+|++||.++|.++.++
T Consensus        52 ~~v~TP~~-~~~g~~~~g~~l~~V~ILraG~~~~~~l~~~ip~~~vg~i~~~rd~~t~~~~~~~~~lp~di~~r  124 (208)
T 2ehj_A           52 VTIEGWNG-PVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDER  124 (208)
T ss_dssp             EEEEETTE-EEEEEEECSSCCEEEEBTTGGGGGHHHHHHHCTTCEECEEEEEECTTTCCEEEEEEECCSCGGGC
T ss_pred             EEEECCCc-cEEEEEecCCceEEEEeecCHHHHHHHHHHhCCcCceeEEEEEEcCCCCceEEEecCCCCccCCC
Confidence            45677777 56777888777888999999999999999999999999999999999999999999999988764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.58  E-value=3.7e-08  Score=75.19  Aligned_cols=29  Identities=10%  Similarity=0.142  Sum_probs=26.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -+|++++|+||||||||||+++|++.+.+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~   31 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD   31 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence            36899999999999999999999998753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.58  E-value=1.3e-08  Score=87.96  Aligned_cols=47  Identities=13%  Similarity=0.068  Sum_probs=37.0

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .-+.++||+++|+..  .++++ ++|++      +|+|+||||||||+++|+|...
T Consensus        10 ~~l~~~~l~~~y~~~--~vl~~-vsf~I------~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           10 GYVGFANLPNQVYRK--SVKRG-FEFTL------MVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             -----CCCCCCTTTT--TCC-C-CCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred             CcEEEEecceeECCE--EEecC-CCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence            358999999999764  78999 99986      9999999999999999998764

>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1

Probab=98.57  E-value=2.9e-08  Score=78.07  Aligned_cols=73  Identities=29%  Similarity=0.454  Sum_probs=56.6

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.|..+.|.+---|+|.||+..|.+++.+++|.+++++|.++||+.+.+|++||.++|.++.++
T Consensus        52 ~~v~TP~g-~~~g~~~~g~~l~~V~ILraG~~~~~~l~~~ip~~~vg~I~~~rd~~t~~~~~~~~~lp~di~~r  124 (208)
T 1v9s_A           52 TTVETPIA-PARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAER  124 (208)
T ss_dssp             EEEECSSS-EEEEEEECSSCCEEEEETTTHHHHHHHHHTTCTTCEEEEEEEC---------CEEEECCSCGGGS
T ss_pred             EEEECCCc-eEEEEEecCCceEEEEeccchHHHHHHHHHhCCCCeeeEEEEEEcCCCCCceEEeccCCCccCCC
Confidence            45677777 56777888777888999999999999999999999999999999999999999999999988765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.56  E-value=2.3e-08  Score=81.99  Aligned_cols=40  Identities=18%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++|++ +++.+++|++++|+|+||||||||++.|++.+.+.
T Consensus        23 ~~Ld~-i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           23 TGIND-KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             TTHHH-HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHH-HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            67899 99999999999999999999999999999987543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.53  E-value=9.6e-09  Score=92.83  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             Ccccccceeeccccccccccccc----------cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFI----------APSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~v----------sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      .++++|+++.|....++.++. +          +++++.   ++|+|+||||||||+++|+|++.|...|.+..++
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~-id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g   81 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDL-IDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCP   81 (608)
T ss_dssp             ----------CHHHHHHHHHH-HHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHH-HHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcC
Confidence            478899999997543444443 3          355543   9999999999999999999987664455554443

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.53  E-value=3.5e-08  Score=93.77  Aligned_cols=52  Identities=19%  Similarity=0.247  Sum_probs=40.1

Q ss_pred             Cccccc-----ceeeccccccccccccccCCCCC-------CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEG-----VIKQYVNMVKPAFSTFIAPSMVE-------PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~n-----vs~~y~~~~~~~l~~~vsl~i~~-------g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++++|     |++.|.+. ..++++ ++|.+.+       |++++|+|||||||||++|.+ |++.
T Consensus       750 ~l~i~~~rHP~l~~~~~~~-~~v~nd-i~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGD-DFIPND-ILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CEEEEEECCCC------CC-CCCCEE-EEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             eEEEEeccccEEEEEecCC-ceEeee-eeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            488999     99988432 378999 9999987       899999999999999999999 7763

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.52  E-value=6.8e-08  Score=82.60  Aligned_cols=54  Identities=17%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             ccCcccccceeecccccccccc--------------ccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFS--------------TFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~--------------~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...+.++|+++.|+.. +..++              | +.+.+.+|+.++|+|+||||||||++.|++..
T Consensus       131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID-~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLD-LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHH-HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cCCceeccccccCCCC-ccccccCCCCcccccceeee-eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            4579999999999875 46778              8 89999999999999999999999999998865

>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}

Probab=98.51  E-value=9e-08  Score=75.28  Aligned_cols=72  Identities=29%  Similarity=0.364  Sum_probs=63.6

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.+..++|.+---|+|.||+..|.+.+.+++|.+++++|.++||+.+.+|++||.++| ++.++
T Consensus        51 ~~v~TP~~-~~~~~~~~g~~~~~V~ILraG~~~~~~l~~~lp~~~vg~i~~~rd~~t~~~~~~~~~lp-di~~r  122 (208)
T 2e55_A           51 KEVRTWIG-NKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLP-ELKGK  122 (208)
T ss_dssp             EEEEETTE-EEEEEECCGGGEEEEEEETTTHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECC-CCBTS
T ss_pred             eEEeCCCC-ceEeeeecCCcEEEEEEecchHHHHHHHHHhCCCCcEEEEEEEEecCCCceEEEecCCC-CCCCC
Confidence            35667777 55677788777888999999999999999999999999999999999999999999999 87654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.49  E-value=3e-08  Score=79.49  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=43.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++++++.|...  .++++ +++.+++|  ++|+||||||||||++.|++.+...
T Consensus        26 ~~l~~l~~~~~~~--~~~~~-~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~   76 (254)
T 1ixz_A           26 EELKEIVEFLKNP--SRFHE-MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVP   76 (254)
T ss_dssp             HHHHHHHHHHHCH--HHHHH-TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCH--HHHHH-cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5567777777543  67899 99999999  9999999999999999999987643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.48  E-value=8.8e-08  Score=72.75  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++ +++.+.+| +.+|+|+|||||||++++|...+.+
T Consensus        18 ~~-~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           18 KK-VVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SC-EEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cc-EEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            45 78888888 9999999999999999999988765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.47  E-value=1.2e-07  Score=73.57  Aligned_cols=46  Identities=35%  Similarity=0.619  Sum_probs=37.7

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV   94 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~   94 (199)
                      +--.+++|.+++|+|+|||||||+++.|++.+.  .+.++++|.++..
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~~~~   59 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDFFKP   59 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGGBCC
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCccccC
Confidence            455788999999999999999999999988763  3567788877653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.46  E-value=3.9e-08  Score=80.03  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=41.6

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++++.+.|...  .++++ +++.+++|  ++|+||||||||||+++|++.+...
T Consensus        50 ~~l~~l~~~~~~~--~~l~~-~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~  100 (278)
T 1iy2_A           50 EELKEIVEFLKNP--SRFHE-MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVP  100 (278)
T ss_dssp             HHHHHHHHHHHCH--HHHHH-TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCH--HHHHH-cCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCC
Confidence            3456666666443  67889 99999999  9999999999999999999988633

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.46  E-value=4.2e-09  Score=91.12  Aligned_cols=34  Identities=12%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             ccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          43 FSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        43 l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -++ ++++++.++.++|+|+||||||||++.|++.
T Consensus       147 ~~~-i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          147 KRR-LRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEE-EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             Eee-eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            367 8999999999999999999999999999886

>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1

Probab=98.45  E-value=1.7e-07  Score=74.32  Aligned_cols=73  Identities=30%  Similarity=0.378  Sum_probs=65.0

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.|..+.|.+---|+|.|++..|.+.+.+.+|++.+++|.++||+.+.+++.||.++|.++.++
T Consensus        65 ~~v~TP~g-~~~g~~~~g~~lviV~IlrgG~~~~~~l~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~gr  137 (221)
T 1o5o_A           65 VEVETPIT-KTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDK  137 (221)
T ss_dssp             EEEECSSC-EEEEEECCSTTEEEEEEETTHHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCCTTC
T ss_pred             EEEECCCc-eEEEEEecCCeEEEEEEecchHHHHHHHHHhCCCCcEEEEEEEEcCCCCceeEEEecCCCccCCC
Confidence            45677777 56777888778888999999999999999999999999999999999999999999999988764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.44  E-value=1e-07  Score=73.77  Aligned_cols=32  Identities=25%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+..++|++++|+|+|||||||++++|++.++
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            34567899999999999999999999999884

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.44  E-value=1.3e-07  Score=73.78  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++|++++|+||||||||||++.|++.+.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.42  E-value=6.7e-08  Score=82.34  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +++|++++|+||||||||||+++|++.+.+.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            7899999999999999999999999988654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.42  E-value=1e-07  Score=73.87  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=24.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |++++|+||||||||||+++|++.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc
Confidence            68899999999999999999999885

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.40  E-value=3.6e-07  Score=70.83  Aligned_cols=46  Identities=35%  Similarity=0.411  Sum_probs=34.1

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYR   93 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~   93 (199)
                      +....+|.+++|+|+|||||||+++.|++.+.+.  .+..+..|.++.
T Consensus        16 ~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~   63 (201)
T 1rz3_A           16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV   63 (201)
T ss_dssp             TSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred             HhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence            3457789999999999999999999999987432  233334455543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.40  E-value=1.1e-07  Score=80.62  Aligned_cols=135  Identities=12%  Similarity=0.036  Sum_probs=76.1

Q ss_pred             ccccccccC--CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccch----hccccccccCCC-CCCCchHH
Q psy9640          41 PAFSTFIAP--SMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSF----YRVHADIIVPRG-GENCVAID  111 (199)
Q Consensus        41 ~~l~~~vsl--~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~----~~~~~~~~~~~~-~~~~~~~~  111 (199)
                      +.|+. +--  -+++|+++.|.||+|||||||+..++......  .+-++.....    +.........+. ...+...+
T Consensus        47 ~~LD~-~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e  125 (356)
T 3hr8_A           47 LAIDI-ATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE  125 (356)
T ss_dssp             HHHHH-HTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred             HHHHH-HhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence            45555 322  68899999999999999999999998875322  2223322211    000001111110 11123344


Q ss_pred             HHHHHHHHHHhcC--c--eeecCCceeeec-ceecC--CeeeeeeEEeccchhHHHHHhhccccceeEEEEEeC
Q psy9640         112 LIVQHIHSQLQAG--V--SVDMPQGYTYEG-KRCAV--SKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTN  178 (199)
Q Consensus       112 ~~~~~l~~~~~~~--~--~~~~~~~~~~~g-~~lSg--Gq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~  178 (199)
                      .+...+.......  .  .++--..+  .+ ..++|  |++|+...||++..+...|.++.....+++|++.|=
T Consensus       126 ~~l~~~~~l~~~~~~dlvVIDSi~~l--~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv  197 (356)
T 3hr8_A          126 QALEIVDELVRSGVVDLIVVDSVAAL--VPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI  197 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECTTTC--CCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred             HHHHHHHHHhhhcCCCeEEehHhhhh--cChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence            4444442222211  1  11100000  11 23444  788999999999988888888888888888888763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.39  E-value=1.8e-07  Score=70.26  Aligned_cols=29  Identities=28%  Similarity=0.414  Sum_probs=26.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+.+++|+|+|||||||+++.|++.++..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~   31 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNME   31 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999988753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.38  E-value=1.2e-07  Score=73.98  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             ccccccccC-CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          41 PAFSTFIAP-SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        41 ~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.|++ +.. .+++|++++|+||||||||||++.|++...
T Consensus        10 ~~Ld~-~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           10 LDFDK-LIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             HHHHG-GGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hHHHH-HhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            57788 777 899999999999999999999999997663

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.37  E-value=1.7e-07  Score=78.57  Aligned_cols=32  Identities=34%  Similarity=0.420  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..++|++++|+|||||||||++++|++.+.+.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~  156 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH  156 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            45789999999999999999999999998654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.35  E-value=1.3e-07  Score=80.74  Aligned_cols=40  Identities=20%  Similarity=0.110  Sum_probs=36.6

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..++++ +++.+++|++++|+||||||||||++.|++.+..
T Consensus       156 ~~~l~~-~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          156 YDFLKC-MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             HHHHHH-HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             HHHHHh-cccccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            367889 9999999999999999999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.35  E-value=3.4e-07  Score=69.01  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=26.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+|++++|+|+|||||||+++.|++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~   34 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA   34 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence            57999999999999999999999988753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.35  E-value=5.3e-08  Score=86.29  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++++ +++.+++|+.++|+||||||||||+++|++++.+.
T Consensus       248 ~~l~~-l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          248 GVLAY-LWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             HHHHH-HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HHHHH-HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            45677 88899999999999999999999999999998654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.33  E-value=3.4e-07  Score=71.40  Aligned_cols=32  Identities=9%  Similarity=0.169  Sum_probs=26.7

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++...+|.+++|+||||||||||++.|++.+.
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45566899999999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.32  E-value=3.4e-07  Score=73.67  Aligned_cols=30  Identities=37%  Similarity=0.398  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -.++|++++|+|||||||||++++|+..++
T Consensus        23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           23 MTAIAPVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             CTTTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            347899999999999999999999996554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.31  E-value=2.6e-07  Score=70.11  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++.+.+|+.++|.||+|||||||++.|++.+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67788899999999999999999999999874

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.31  E-value=2.8e-07  Score=85.61  Aligned_cols=37  Identities=16%  Similarity=0.064  Sum_probs=34.0

Q ss_pred             cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          40 KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        40 ~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++ ++|+ ++|++++|+||||||||||+|+|++..
T Consensus       595 ~~vlnd-isl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          595 PFIANP-LNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCCCEE-EEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeec-cccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            468899 9999 999999999999999999999999864

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.31  E-value=2.6e-07  Score=85.38  Aligned_cols=51  Identities=12%  Similarity=0.038  Sum_probs=38.4

Q ss_pred             cCcccccceeeccc-cccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          24 RGRDLEGVIKQYVN-MVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        24 ~~i~l~nvs~~y~~-~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+++++...-.-. ....+++| ++|+   |++++|+||||||||||+|++++..
T Consensus       549 ~~i~i~~~rHP~le~~~~~vl~d-isl~---g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          549 DRLQIRAGRHPVVERRTEFVPND-LEMA---HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SSEEEEEECCTTGGGTSCCCCEE-EEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeECceEccCCceEeee-ccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence            34555555332211 22468889 9998   9999999999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.30  E-value=5.7e-08  Score=81.35  Aligned_cols=55  Identities=15%  Similarity=0.055  Sum_probs=45.1

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCC-------eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEP-------FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g-------~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ...++.++++..|...  .++++ +++.+++|       +.++|.||||||||||+++|++.++.
T Consensus        16 ~~~lr~~~l~~~~g~~--~~~~~-l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~   77 (334)
T 1in4_A           16 VQFLRPKSLDEFIGQE--NVKKK-LSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT   77 (334)
T ss_dssp             -CTTSCSSGGGCCSCH--HHHHH-HHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             HHHcCCccHHHccCcH--HHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3457788888888654  57788 88888765       88999999999999999999998854

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.29  E-value=2.5e-07  Score=73.35  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -+...++|++++|.|+|||||||++++|++.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3557789999999999999999999999887

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.29  E-value=3.6e-07  Score=69.81  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      |++++|+|||||||||+++.|++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc
Confidence            6899999999999999999998743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.24  E-value=1.8e-07  Score=77.31  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +++.+|++++|+||||||||||+++|+|...+..+
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G  198 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS  198 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccccccc
Confidence            44567999999999999999999999998876543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.23  E-value=7e-07  Score=69.90  Aligned_cols=28  Identities=36%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+.+++|+|+|||||||++++|++.++.
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~   31 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQW   31 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3578999999999999999999998764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.22  E-value=2.7e-08  Score=79.37  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      |+++|+...|..       + ++|.  + ++++|+||||||||||+++|++.+.+..
T Consensus        10 l~l~~~~~~~~~-------~-~~~~--~-~~~~i~GpnGsGKSTll~~i~g~~~~~~   55 (227)
T 1qhl_A           10 LTLINWNGFFAR-------T-FDLD--E-LVTTLSGGNGAGKSTTMAAFVTALIPDL   55 (227)
T ss_dssp             EEEEEETTEEEE-------E-ECHH--H-HHHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred             EEEEeeecccCC-------E-EEEc--C-cEEEEECCCCCCHHHHHHHHhcccccCC
Confidence            667777665532       3 4443  4 7899999999999999999999987654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.20  E-value=8.3e-07  Score=70.80  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++++++|+|+|||||||++++|+..++
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3579999999999999999999994443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.18  E-value=1e-06  Score=74.79  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=30.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..+++ +++++.+| +++|+|||||||||++++|.+
T Consensus        15 ~~~~~-~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           15 RNLAP-GTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TTCCS-EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceee-eEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            35677 89999999 999999999999999999986

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.18  E-value=6.4e-07  Score=73.91  Aligned_cols=48  Identities=19%  Similarity=0.059  Sum_probs=40.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +..+++++.|...  .  ++ ++++  +|++++++|++||||||+++.|++.+.+
T Consensus        77 ~~~~~l~~~~~~~--~--~~-i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~  124 (295)
T 1ls1_A           77 TVYEALKEALGGE--A--RL-PVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (295)
T ss_dssp             HHHHHHHHHTTSS--C--CC-CCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC--C--ce-eecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6678888888543  2  56 8888  9999999999999999999999998854

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.17  E-value=3.4e-07  Score=76.97  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=44.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++.+++.+.|...  .++++ +++.+.++.+++|+|++|+|||||++.|++.+.
T Consensus        30 ~ie~~~~~~~~~~~--~~~~~-l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           30 LVESRHPRHQALST--QLLDA-IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHCCCHHHHHHHH--HHHHH-HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HhhcCCchhhhHHH--HHHHh-CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            36777777777544  67788 899999999999999999999999999998763

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.16  E-value=1.8e-07  Score=77.69  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +++.+|++++|+|+||||||||++.|+|...+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence            567799999999999999999999999877554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.16  E-value=9.2e-07  Score=76.41  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=35.8

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++++|+ +.|.+.     ..   +.+.+|++++|+||||||||||++.|.+++.+
T Consensus         6 ~l~~~~~-~~~~~~-----~~---~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A            6 GLELSNF-KSYRGV-----TK---VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             EEEEESC-SSCCSE-----EE---EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEeCE-EEECCc-----ee---EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            4667777 566432     12   34567899999999999999999999987754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.16  E-value=1.5e-06  Score=72.55  Aligned_cols=36  Identities=19%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             cccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          44 STFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        44 ~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+ ++|.+++|++++++|++||||||++..|++.+.+
T Consensus        96 ~~-l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~  131 (320)
T 1zu4_A           96 YR-IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE  131 (320)
T ss_dssp             CC-CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             cC-ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            67 8999999999999999999999999999998854

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.15  E-value=1.1e-06  Score=68.06  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=26.9

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -.+.+|.+++|+|||||||||+++.|+..+.
T Consensus         7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             --CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3678999999999999999999999998774

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.13  E-value=9.9e-07  Score=68.45  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             ccccccccC-CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          41 PAFSTFIAP-SMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        41 ~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +.|++ +.. .+++|++++|+|+||||||||++.|++
T Consensus         7 ~~LD~-~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            7 KSLDS-LLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHH-HTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHH-hhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45666 554 799999999999999999999999998

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.13  E-value=1.2e-06  Score=65.16  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=26.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +|+.++|+||||||||||++.+++.+.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.11  E-value=8.9e-07  Score=79.09  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ...+++|++++|+|+||||||||+++|++.+.+..
T Consensus       363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~  397 (552)
T 3cr8_A          363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMG  397 (552)
T ss_dssp             CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence            34678999999999999999999999999987654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.10  E-value=2e-06  Score=65.12  Aligned_cols=27  Identities=33%  Similarity=0.385  Sum_probs=24.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+|++++|+|++||||||+++.|++.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.10  E-value=2.3e-06  Score=67.97  Aligned_cols=37  Identities=27%  Similarity=0.223  Sum_probs=27.6

Q ss_pred             ccccccCCCC---CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          43 FSTFIAPSMV---EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        43 l~~~vsl~i~---~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      |.+ +++.++   +|.+++|.|++||||||+++.|+..+..
T Consensus        13 ~~~-~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           13 LGT-ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             ccC-CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            344 555554   9999999999999999999999998875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.09  E-value=2.4e-06  Score=70.87  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +++..++|++++|+|+|||||||+++.|++.+.+
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            5667789999999999999999999999998854

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.08  E-value=1.1e-06  Score=72.71  Aligned_cols=31  Identities=19%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+.+|++++++||||||||||+++|+ ...+.
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~  191 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELR  191 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence            34579999999999999999999999 66543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.08  E-value=2.7e-06  Score=64.89  Aligned_cols=33  Identities=24%  Similarity=0.175  Sum_probs=27.8

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHH-cC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIES-LN   79 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~-l~   79 (199)
                      +|+...++.+++|+|++||||||+++.|+.. ++
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g   36 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDG   36 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            6888889999999999999999999999987 44

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.07  E-value=1.2e-06  Score=73.98  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+..+...+++|++++|+||||||||||++.+++..
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45677337899999999999999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.03  E-value=2.1e-06  Score=67.57  Aligned_cols=37  Identities=11%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.|+..+.=.+++|++++|+||||||||||++.|++.
T Consensus        11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3455523347899999999999999999999999984

>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1

Probab=98.03  E-value=5.3e-06  Score=65.15  Aligned_cols=73  Identities=27%  Similarity=0.454  Sum_probs=62.6

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.+..+.|..---|+|.|+++.|.+.+.+.+|.+.+++|.++|++.+.++++||.++|.++.++
T Consensus        53 ~~V~tPl~-~~~~~~~~~~~~~vV~Ilr~G~~~~~~L~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~  125 (209)
T 1i5e_A           53 VEIETPVS-KARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEER  125 (209)
T ss_dssp             EEEECSSC-EEEEEEECCCCEEEEEBTTGGGGGHHHHHHHCTTSEECEEEEECCTTCSSCEEEEEECCTTTTTS
T ss_pred             eEEecCCc-eeeeeEecCCceEEEEEecCChHHHHHHHHhCCCCeEEEEEEEEcCCCCceEEEEEcCCCccCCC
Confidence            45667776 44677787667778999999999999999999999999999999999999999999999887654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.02  E-value=1.2e-06  Score=78.12  Aligned_cols=53  Identities=26%  Similarity=0.392  Sum_probs=41.4

Q ss_pred             ccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          27 DLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        27 ~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      -++++...|...  .++.+ +++.+ +|..++|+||||||||||++.|++.+.++.+
T Consensus        85 G~~~vk~~i~~~--~~l~~-~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A           85 GLEKVKERILEY--LAVQK-LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             SCHHHHHHHHHH--HHHHH-HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHHHHHH--HHHHH-hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            344555555433  46777 88888 8999999999999999999999999876543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.01  E-value=4e-06  Score=69.72  Aligned_cols=25  Identities=28%  Similarity=0.252  Sum_probs=23.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      =++++|+|+||||||||++.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4689999999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.99  E-value=4.4e-06  Score=64.40  Aligned_cols=28  Identities=39%  Similarity=0.501  Sum_probs=24.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.+++|+|++||||||+++.|++.++..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~   45 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYP   45 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence            5689999999999999999999987643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.99  E-value=4.1e-06  Score=64.68  Aligned_cols=25  Identities=44%  Similarity=0.852  Sum_probs=21.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+++|+|++||||||+++.|++ ++.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~   27 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGV   27 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence            4799999999999999999987 543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.98  E-value=4.1e-06  Score=63.44  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+|.+++|+|++||||||+++.|+..++.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~   30 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGF   30 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999999987653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.98  E-value=2.8e-06  Score=69.85  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchhc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYR   93 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~~   93 (199)
                      ++.+|+|.|+|||||||+++.|+..++.  ..+.++..|++++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            5678999999999999999999886642  2356788899886

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.96  E-value=7.1e-06  Score=65.65  Aligned_cols=44  Identities=55%  Similarity=0.863  Sum_probs=33.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC-------eeeeecccchhcc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP-------WVTLLSMDSFYRV   94 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-------~~~~i~~d~~~~~   94 (199)
                      -.+..+|+|.|++||||||+++.|+..++..       .+.+++.|+++..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~   69 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV   69 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence            3455789999999999999999999877644       2346778888763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.95  E-value=7.2e-06  Score=61.60  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=25.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .|.++.|+|+|||||||+++.|+..++..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~   30 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            35789999999999999999999988643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.95  E-value=4.8e-06  Score=64.13  Aligned_cols=23  Identities=43%  Similarity=0.602  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +++|+|++||||||+++.|++ ++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g   25 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG   25 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC
Confidence            699999999999999999999 64

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.94  E-value=7.1e-06  Score=62.38  Aligned_cols=32  Identities=31%  Similarity=0.437  Sum_probs=28.0

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +...+|.++.|+|++||||||+++.|+..+..
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            34568999999999999999999999988753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.94  E-value=7e-06  Score=61.06  Aligned_cols=26  Identities=35%  Similarity=0.418  Sum_probs=23.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +++|+|++||||||+++.|+..++..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~   28 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYP   28 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            78999999999999999999887644

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.94  E-value=3.5e-06  Score=68.39  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.+|++++|+|+||||||||++.+++.+.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            688999999999999999999999998653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.94  E-value=3.7e-06  Score=74.18  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=40.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++++...|...  ..+++ +++.+++|  +.|+||+|+|||||++.|++....+
T Consensus        41 ~~l~~lv~~l~~~--~~~~~-lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~   91 (499)
T 2dhr_A           41 EELKEIVEFLKNP--SRFHE-MGARIPKG--VLLVGPPGVGKTHLARAVAGEARVP   91 (499)
T ss_dssp             HHHHHHHHHHHCG--GGTTT-TSCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhch--hhhhh-ccCCCCce--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3445555555433  57888 89999999  9999999999999999999987644

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.91  E-value=7.5e-06  Score=63.67  Aligned_cols=32  Identities=31%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.+.+|.+++|+|++||||||+++.|++.+.
T Consensus        19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45678899999999999999999999998875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.90  E-value=1.2e-05  Score=61.09  Aligned_cols=31  Identities=35%  Similarity=0.589  Sum_probs=26.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.++.++.|+|++||||||+++.|+..++..
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~   32 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLP   32 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            4578899999999999999999999877543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.88  E-value=2.3e-06  Score=77.08  Aligned_cols=44  Identities=16%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL   85 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~   85 (199)
                      .++++ +++.+.+|+.++|+||||||||||++.|++.+.+...+.
T Consensus        48 ~~l~~-l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~   91 (604)
T 3k1j_A           48 HAVEV-IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLED   91 (604)
T ss_dssp             HHHHH-HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEE
T ss_pred             hhHhh-ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCe
Confidence            67888 999999999999999999999999999999987765443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.86  E-value=1.2e-05  Score=62.53  Aligned_cols=28  Identities=32%  Similarity=0.639  Sum_probs=24.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++.+++|+|++||||||+++.|+. ++.
T Consensus         2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~   29 (218)
T 1vht_A            2 SLRYIVALTGGIGSGKSTVANAFAD-LGI   29 (218)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence            3568999999999999999999987 543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.85  E-value=1e-05  Score=61.09  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=27.3

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..+.++.++.|+|++||||||+++.|+..++.
T Consensus         6 ~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~   37 (180)
T 3iij_A            6 PEFMLLPNILLTGTPGVGKTTLGKELASKSGL   37 (180)
T ss_dssp             CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             cccccCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            34567788999999999999999999987754

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.84  E-value=1.7e-05  Score=70.13  Aligned_cols=30  Identities=13%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +.+.+.++..+.|+|.+||||||+++.|+.
T Consensus       160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          160 VVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            566777899999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.84  E-value=9.3e-06  Score=66.98  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC---Ceeeeecccch
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV---PWVTLLSMDSF   91 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~---~~~~~i~~d~~   91 (199)
                      .+|++++++|+|||||||+++.|++.+.+   ..+.++..|.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            57899999999999999999999998853   25566666654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.83  E-value=1e-05  Score=61.20  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +|.++.|.|++||||||+++.|+..++
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999998765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.82  E-value=1.2e-05  Score=63.54  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=26.7

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -...+|.+++|+|++||||||+++.|++.++.
T Consensus        11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~   42 (236)
T 1q3t_A           11 DDKMKTIQIAIDGPASSGKSTVAKIIAKDFGF   42 (236)
T ss_dssp             ---CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35778999999999999999999999987763

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.81  E-value=1.6e-05  Score=60.04  Aligned_cols=29  Identities=21%  Similarity=0.174  Sum_probs=24.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+..+.|+|++||||||+++.|+..++..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~   32 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI   32 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            35689999999999999999999887654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.81  E-value=1e-05  Score=68.11  Aligned_cols=46  Identities=24%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             cccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          28 LEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        28 l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++++...|... ...+|++ ++++++   .|+++|++|||||||++.|.|.
T Consensus        11 l~~~~~~~~~~~~~~~l~~-i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHGDSSALPT-LWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCCSSCCC-----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhCcccccccccc-ccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            55666666432 2357888 888887   9999999999999999999984

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.80  E-value=1.4e-05  Score=61.27  Aligned_cols=27  Identities=37%  Similarity=0.367  Sum_probs=24.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+|.+|+|.|++||||||+++.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999877

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.80  E-value=1.2e-05  Score=64.08  Aligned_cols=39  Identities=23%  Similarity=0.531  Sum_probs=29.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV   94 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~   94 (199)
                      ++.+++|.|||||||||+++.|+..++..   .+..+.+++.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~---~~d~g~~~r~   46 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGAR---YLDTGAMYRI   46 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCE---EEEHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCC---cccCCcHHHH
Confidence            45699999999999999999999887633   2344444443

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.79  E-value=1.2e-05  Score=59.61  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.+.+ .+.+|+|||||||||++..|.-.+
T Consensus        18 ~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            334444 488999999999999999997544

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.79  E-value=1.5e-05  Score=60.60  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=26.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +.++.+++|+|++||||||+++.|+..++.
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~   35 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGY   35 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346789999999999999999999987764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.79  E-value=1.2e-05  Score=61.28  Aligned_cols=27  Identities=19%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ...++|+|+||||||||++.+++...+
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            358999999999999999999987643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.77  E-value=2.2e-05  Score=66.02  Aligned_cols=34  Identities=38%  Similarity=0.580  Sum_probs=29.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF   91 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~   91 (199)
                      .+++|+||||||||||++.|+..++   +.+++.|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccccc
Confidence            5899999999999999999999876   456778877

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.77  E-value=1.5e-05  Score=60.88  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=22.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +++|.|++||||||+++.|+..++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            6899999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.77  E-value=1.8e-05  Score=60.55  Aligned_cols=25  Identities=44%  Similarity=0.660  Sum_probs=23.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +..+|+|+|++||||||+++.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4679999999999999999999886

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.77  E-value=1.8e-05  Score=60.78  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=25.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +|.+|+|.|++||||||+++.|+..++.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            5789999999999999999999988765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.77  E-value=1.4e-05  Score=64.15  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=27.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ...++.++.|+|++||||||+++.|+..++
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            567889999999999999999999999876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.76  E-value=1.2e-05  Score=69.64  Aligned_cols=49  Identities=18%  Similarity=0.053  Sum_probs=39.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +..+++++.|...  .  .+ +++.  ++.+++++|++||||||++..|++.+...
T Consensus        77 ~v~~~L~~~~~~~--~--~~-i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           77 TVYEALKEALGGE--A--RL-PVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             HHHHHHHHHTTSS--C--CC-CCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCC--c--cc-ccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4455677777543  1  56 7887  89999999999999999999999988643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.75  E-value=1.8e-05  Score=61.06  Aligned_cols=29  Identities=28%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..+|.+|+|.|++||||||+++.|+..++
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999987654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.74  E-value=2.4e-05  Score=62.83  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=27.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF   91 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~   91 (199)
                      .+++|+||+|||||||++.|++.++..   +++.|..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~---~i~~D~~   35 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWP---VVALDRV   35 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCC---EEECCSG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCe---EEeccHH
Confidence            378999999999999999999987643   3445543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.74  E-value=1.7e-05  Score=67.96  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .+++|..++|+|++|||||||+++|++
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            678899999999999999999999999

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.73  E-value=1.8e-05  Score=59.59  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .++.++.|.|++||||||+++.|+..++...
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~   33 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSF   33 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            3578999999999999999999998876543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.73  E-value=2.2e-05  Score=59.47  Aligned_cols=28  Identities=32%  Similarity=0.625  Sum_probs=24.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++.+|+|+|++||||||+++.|+..++.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~   29 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGY   29 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4678999999999999999999887764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.73  E-value=1.9e-05  Score=58.41  Aligned_cols=26  Identities=31%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++|+|++||||||+++.| ..++..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~   27 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAK   27 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence            37899999999999999999 665543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.73  E-value=1.8e-05  Score=60.59  Aligned_cols=24  Identities=21%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++|+|++|||||||++.|++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            478999999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.73  E-value=8.2e-06  Score=68.98  Aligned_cols=38  Identities=18%  Similarity=0.416  Sum_probs=33.2

Q ss_pred             ccccccccCCCCCCeE--EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          41 PAFSTFIAPSMVEPFV--IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~i--v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+++. +++.+++|++  ++|+|++||||||++++|++.++
T Consensus        10 ~il~~-l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQL-LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHH-HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            46677 8888999988  99999999999999999998653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.72  E-value=2.1e-05  Score=60.72  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=25.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++|.+|+|.|++||||||+++.|+..++
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999997653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.72  E-value=1.9e-05  Score=59.34  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=23.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++.|+|++||||||+++.|+..++.+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~   31 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLV   31 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            58999999999999999999987643

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.71  E-value=2e-05  Score=60.06  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -.+++|+|+||||||||++.|++.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35899999999999999999998763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.71  E-value=1.4e-05  Score=62.90  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.|++.+.-.+++|++++|.|+||||||||+..++..
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4566622668999999999999999999997766553

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.71  E-value=1.8e-05  Score=59.30  Aligned_cols=27  Identities=15%  Similarity=0.255  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++|..++|+|++|+|||||++.|++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.69  E-value=3.6e-05  Score=61.42  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+++ ++....+|  +.|.||+|+||||+++.|++.++.+.
T Consensus        36 ~~~~-~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~~   73 (257)
T 1lv7_A           36 RFQK-LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVPF   73 (257)
T ss_dssp             GC------CCCCE--EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             HHHH-cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCCE
Confidence            3445 55555555  88999999999999999999886543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.69  E-value=3.2e-05  Score=59.32  Aligned_cols=26  Identities=46%  Similarity=0.738  Sum_probs=23.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +++|.|++||||||+++.|+..++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~   29 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVP   29 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            89999999999999999999987643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.69  E-value=1.2e-05  Score=61.66  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=29.9

Q ss_pred             eeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          32 IKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        32 s~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ++.|++. ..++++ +++..++. .++++|++|+|||||++.+.+
T Consensus         6 ~~~~~~~-~~~l~~-~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGF-SSVLQF-LGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             --------CHHHHH-HTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHH-HHHHHH-hhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            3455554 367888 89988766 589999999999999999865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.68  E-value=9.8e-06  Score=62.59  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +++|.|++||||||+++.|+..+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            7899999999999999999988753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.67  E-value=3.9e-05  Score=58.89  Aligned_cols=31  Identities=29%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .-.++.+|+|.|++||||||+++.|+..++.
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~   41 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSF   41 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            3456679999999999999999999987754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.67  E-value=2.9e-05  Score=58.07  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .++.|+|++||||||+++.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.67  E-value=2.8e-05  Score=63.72  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ....|.++.|+|+|||||||+++.|+..+.
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345688999999999999999999988763

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.66  E-value=2.8e-05  Score=59.20  Aligned_cols=30  Identities=33%  Similarity=0.447  Sum_probs=26.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++.+.+|+|+|++||||||+++.|+..++.
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~   38 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGF   38 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345679999999999999999999988763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.65  E-value=3.8e-05  Score=59.15  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .|.|+||||||||||++.|...+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999999987653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.64  E-value=3.2e-05  Score=65.09  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++.+++|+|++|||||||++.|++.+.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            4589999999999999999999998763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.64  E-value=1.9e-05  Score=67.83  Aligned_cols=35  Identities=11%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      +.|+..+.=.+++|++++|+||||||||||++.|+
T Consensus       165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            34444223478999999999999999999999765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.64  E-value=4.8e-05  Score=58.39  Aligned_cols=31  Identities=29%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -..+.+|+|+|++||||||+++.|+..++..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~   47 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP   47 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            3566799999999999999999999877644

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.63  E-value=3.5e-05  Score=60.12  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=25.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++|.++.|+|++||||||+++.|+..++.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~   30 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHA   30 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            46789999999999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.63  E-value=4.6e-05  Score=56.75  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++++|.|++||||||+++.|+..++.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~   35 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEV   35 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            6899999999999999999998877543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.62  E-value=3.4e-05  Score=58.29  Aligned_cols=34  Identities=29%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF   91 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~   91 (199)
                      .+|+|+|++||||||+++.|+..++.+   ++..|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~---~id~D~~   36 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVG---LLDTDVA   36 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCC---EEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCC---EEeCchH
Confidence            468999999999999999999887654   3344444

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.62  E-value=3.5e-05  Score=58.19  Aligned_cols=25  Identities=32%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+|.|.|++||||||+++.|+..++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999998775

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.62  E-value=3.5e-05  Score=60.41  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++.+++|+|++||||||+++.|+..++.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~   33 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL   33 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45679999999999999999999987754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.61  E-value=8.4e-06  Score=67.97  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=39.3

Q ss_pred             cccccceeeccccccccccccccCCCCCCeE--EEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFV--IGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~i--v~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..-++++..|...  .+++. ++..++.|++  +.+.||+|+||||+++.+++.+.+
T Consensus        19 ~rp~~~~~~~g~~--~~~~~-L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           19 YRPETLDEVYGQN--EVITT-VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             TCCSSGGGCCSCH--HHHHH-HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             hCCCcHHHhcCcH--HHHHH-HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3444455555332  56777 7778888888  999999999999999999997643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.60  E-value=5.3e-05  Score=57.15  Aligned_cols=28  Identities=32%  Similarity=0.528  Sum_probs=24.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+.+++|+|++||||||+++.|+..++.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   32 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGW   32 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3568999999999999999999987763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.60  E-value=4.6e-05  Score=60.71  Aligned_cols=30  Identities=20%  Similarity=0.031  Sum_probs=26.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..++.+++|.|++||||||+++.|+..++.
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~   55 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCY   55 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457889999999999999999999987754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.59  E-value=4.9e-05  Score=58.88  Aligned_cols=26  Identities=38%  Similarity=0.532  Sum_probs=22.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +++|.|++||||||+++.|+..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIP   27 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            58999999999999999998877644

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.58  E-value=4.5e-05  Score=62.90  Aligned_cols=49  Identities=22%  Similarity=0.332  Sum_probs=36.5

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +..+++...|.....   .. +++..+ |.+++++|++|+||||++..|++.+.
T Consensus        75 ~~~~~l~~~~~~~~~---~~-i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           75 IVYDELSNLFGGDKE---PK-VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             HHHHHHHHHTTCSCC---CC-CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccc---cc-cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345566666754311   12 566766 99999999999999999999998874

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.58  E-value=2.8e-05  Score=64.02  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=23.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +..++.+++|+|++|+|||||++.|++.
T Consensus         4 ~~~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CCCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3345568999999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.57  E-value=3.8e-05  Score=59.96  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=24.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+.++.|+|++||||||+++.|+..++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4568999999999999999999988764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.57  E-value=4.4e-05  Score=57.93  Aligned_cols=34  Identities=26%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV--PWVTLLSM   88 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~   88 (199)
                      .+++|+|+||||||||+..|+..+..  ..++++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~   40 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   40 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence            47999999999999999999987632  24455443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.56  E-value=1.9e-05  Score=73.66  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVAT   72 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~   72 (199)
                      .=|+| |+++|+.+.+++|.|.||||||||+.
T Consensus        24 hNLkn-i~v~iP~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           24 HNLKD-ISVKVPRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             TTCCS-EEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred             cCCCC-eeEEecCCCEEEEECCCCCCHHHHHH
Confidence            45799 99999999999999999999999984

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.56  E-value=5.4e-05  Score=58.45  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=28.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY   92 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~   92 (199)
                      ...+++|+|++||||||+++.|+..++.   .++..|.++
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~---~vid~D~~~   47 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGA---HVVNVDRIG   47 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCC---EEEEHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCC---EEEECcHHH
Confidence            4578999999999999999999987653   344555553

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.56  E-value=6.1e-05  Score=58.42  Aligned_cols=26  Identities=27%  Similarity=0.489  Sum_probs=22.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++|+|++||||||+++.|+..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIP   27 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            58999999999999999998877644

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.55  E-value=4e-05  Score=57.11  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++|+|++||||||+++.|+..++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~   29 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYE   29 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            368999999999999999999877643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.55  E-value=6.5e-05  Score=55.70  Aligned_cols=26  Identities=42%  Similarity=0.534  Sum_probs=23.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +|+|.|++||||||+++.|+..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~   27 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIP   27 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            68999999999999999999877643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.54  E-value=4.8e-05  Score=57.82  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++ +++..++. .++++|++|+|||||++.+.+.
T Consensus        12 ~~l~~-~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           12 DVLAS-LGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHH-hhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            46677 88887655 7899999999999999999873

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.53  E-value=5.2e-05  Score=62.23  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++.+.++..+.|.||+|+||||+++.|++.++.
T Consensus        43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~   75 (301)
T 3cf0_A           43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA   75 (301)
T ss_dssp             HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred             HcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence            446788899999999999999999999998764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.51  E-value=5.7e-05  Score=57.12  Aligned_cols=23  Identities=48%  Similarity=0.528  Sum_probs=21.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999876

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.50  E-value=2.7e-05  Score=73.18  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=28.4

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl   71 (199)
                      .=|+| |+++|+++.+++|.|.||||||||+
T Consensus        12 hNLkn-i~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           12 HNLKN-ITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TTCCS-BCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             cccCc-ceeccCCCcEEEEECCCCCcHHHHH
Confidence            45799 9999999999999999999999998

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.50  E-value=1.2e-05  Score=68.08  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..+.++|++.+|...  .+.++ +++.|      +|+|++|+|||||++.|.+.
T Consensus        16 ~~v~~~~l~~~~~~k--~~~~~-~~~~I------~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           16 GYVGFANLPNQVHRK--SVKKG-FEFTL------MVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             -----CCHHHHHHTH--HHHHC-CEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred             ceEEeccchHHhCCe--eecCC-CCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence            458899999988654  56777 77765      99999999999999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.49  E-value=4.6e-05  Score=56.43  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++|+|++|+|||||++.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.49  E-value=2.2e-05  Score=69.34  Aligned_cols=35  Identities=11%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+++ +++.+.+| +.+|+|+||||||||+..|...+
T Consensus        50 ~~~~-~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll   84 (517)
T 4ad8_A           50 TITQ-LELELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (517)
T ss_dssp             TBSC-EEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ceee-EEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence            5577 88899999 99999999999999999997763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.45  E-value=6.8e-05  Score=58.24  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+.+|+|||||||||++..|.-.+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999986544

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.45  E-value=0.00014  Score=60.42  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF   91 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~   91 (199)
                      ++.+++|+||||||||||+..|+..++   ..+++.|+.
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcc
Confidence            356899999999999999999998775   345666664

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.45  E-value=3.2e-05  Score=72.83  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=28.3

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl   71 (199)
                      .=|+| |+++|+++.+++|.|.||||||||+
T Consensus        32 hNLkn-i~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKN-IDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCS-EEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCc-eeeeccCCcEEEEECCCCCCHHHHH
Confidence            45799 9999999999999999999999997

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.44  E-value=8.9e-05  Score=59.58  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++.+|.|+|++||||||+++.|+..+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999998863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.44  E-value=8.2e-05  Score=60.64  Aligned_cols=27  Identities=37%  Similarity=0.623  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ....+|+|+|++||||||+++.|+. ++
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~-lg   99 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN-LG   99 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH-HT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CC
Confidence            4567999999999999999999984 44

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.40  E-value=5.1e-05  Score=66.56  Aligned_cols=39  Identities=31%  Similarity=0.494  Sum_probs=32.6

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..+++ +++.+++|  +.|+||+|+|||||++.+++..+.+.
T Consensus        39 ~~~~~-~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~f   77 (476)
T 2ce7_A           39 SKFNR-IGARMPKG--ILLVGPPGTGKTLLARAVAGEANVPF   77 (476)
T ss_dssp             HHHHT-TTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             HHHhh-cCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            45677 77888777  88999999999999999999876553

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.39  E-value=6e-05  Score=56.83  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++|+|++|+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.37  E-value=0.00015  Score=60.76  Aligned_cols=37  Identities=11%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF   91 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~   91 (199)
                      .++.++.|+||+|||||||+..|+..++.   .+++.|..
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~---eiIs~Ds~   74 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFPL---EVINSDKM   74 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSCE---EEEECCSS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCCC---cEEccccc
Confidence            35679999999999999999999987753   34555554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.37  E-value=0.0001  Score=57.40  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=24.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++.++.|.|++||||||+++.|+..++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   31 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGL   31 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence            4568999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.36  E-value=9.1e-05  Score=55.57  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ...++++|++|+|||||++.|++.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.36  E-value=0.00012  Score=56.78  Aligned_cols=27  Identities=30%  Similarity=0.545  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +.+++|+|++||||||+++.|+..++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~   29 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSM   29 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            568999999999999999999988764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.35  E-value=0.00018  Score=56.60  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +-..+++.++.|+||.||||+|.++.|+..++..
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~   56 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN   56 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            5567889999999999999999999999988654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.35  E-value=0.00019  Score=59.82  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=27.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccch
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSF   91 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~   91 (199)
                      .++.|+||+|||||||++.|+..++.   .+++.|.+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~---~iis~Ds~   39 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPC---ELISVDSA   39 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCE---EEEEECTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC---cEEeccch
Confidence            58999999999999999999998763   34455543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.32  E-value=0.00014  Score=57.06  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=22.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +++|.|++||||||+++.|+..++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~   26 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSL   26 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999987753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.31  E-value=0.00016  Score=56.88  Aligned_cols=29  Identities=24%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..+.++.|.|+.||||||+++.|+..++.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~   42 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCV   42 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45678999999999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.31  E-value=0.00019  Score=55.67  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++|.|++||||||+++.|+..++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~   26 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI   26 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999987754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00033  Score=60.60  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=28.9

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +.++++.=+.+.||+|||||+|++.+++.++.+..
T Consensus       201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~  235 (428)
T 4b4t_K          201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI  235 (428)
T ss_dssp             HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            35566667999999999999999999998876543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.29  E-value=0.00015  Score=57.87  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ...+|.++.|.|++||||||+++.|...+.
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445789999999999999999999988774

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00035  Score=59.92  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=28.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .++++.=+.+.||+|||||+|++.+++..+.+..
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~  211 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI  211 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence            4555566899999999999999999998876543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00036  Score=60.50  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +.++++.=+.+.||+|||||+|++.+++.++.+..
T Consensus       210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~  244 (437)
T 4b4t_L          210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI  244 (437)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            35667777999999999999999999998876543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00041  Score=59.97  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +.++++.=+.+.||+|+|||+|++.+++..+.+..
T Consensus       211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi  245 (437)
T 4b4t_I          211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL  245 (437)
T ss_dssp             HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence            45666677999999999999999999998876543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.28  E-value=0.00027  Score=60.71  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      ..+++|+||||||||||+..|+..++.   .+++.|+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~---~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNG---EVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTE---EEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCC---eEeecCc
Confidence            357899999999999999999988763   3566666

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.26  E-value=0.00019  Score=59.96  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .+.+.+ .+.+|+|||||||||++..|..
T Consensus        18 ~i~f~~-~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           18 VVEFKE-GINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEcCCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            334434 5889999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.26  E-value=0.00014  Score=57.59  Aligned_cols=30  Identities=30%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ...+|.+|.|.|++||||||+++.|+..+.
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999988764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00028  Score=61.48  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.++++.=+.+.||+|||||+|++.+++.++.+.
T Consensus       237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f  271 (467)
T 4b4t_H          237 TLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF  271 (467)
T ss_dssp             HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE
T ss_pred             HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe
Confidence            34667777899999999999999999999887654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=0.00021  Score=56.44  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +|.+++|.|..||||||+++.|+..+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999998874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.24  E-value=0.00021  Score=55.96  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+|.+|.|.|++||||||+++.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999887753

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.22  E-value=0.00014  Score=60.30  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH-cCC
Q psy9640          56 VIGICGGSASGKTTVATKIIES-LNV   80 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~-l~~   80 (199)
                      .+.|.||+|+||||+++.|++. +.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~   63 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGP   63 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            3999999999999999999994 444

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.21  E-value=0.00021  Score=61.97  Aligned_cols=27  Identities=41%  Similarity=0.507  Sum_probs=25.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++.+++++|++||||||++..|+..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999998774

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.20  E-value=0.00021  Score=61.51  Aligned_cols=32  Identities=22%  Similarity=0.193  Sum_probs=26.8

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.-.++.++.|+|++||||||+++.|+..++
T Consensus       252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~  283 (416)
T 3zvl_A          252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG  283 (416)
T ss_dssp             CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34456789999999999999999999987654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.20  E-value=0.00022  Score=64.94  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=26.8

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++.++++..++|+|++|+|||||++.|++...
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            45778999999999999999999999997654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.19  E-value=0.00026  Score=60.07  Aligned_cols=26  Identities=15%  Similarity=0.066  Sum_probs=23.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+..++|+|+|||||||+++.|+..+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999998765

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.17  E-value=0.00019  Score=56.52  Aligned_cols=26  Identities=19%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...|+|+|++|+|||||++.|++..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            34679999999999999999998754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.16  E-value=0.00034  Score=58.05  Aligned_cols=35  Identities=43%  Similarity=0.523  Sum_probs=28.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDS   90 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~   90 (199)
                      .+.+++|+||+|||||||+..|+..++.   -+++.|+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~---~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPV---ELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCE---EEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCC---cEEeccc
Confidence            4568999999999999999999988753   3455554

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.16  E-value=0.00025  Score=57.72  Aligned_cols=24  Identities=33%  Similarity=0.309  Sum_probs=21.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++.|+|++||||||+++.|+..+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            589999999999999999998753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.15  E-value=0.00031  Score=55.26  Aligned_cols=29  Identities=28%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+|.++.+.|++||||||+++.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            47899999999999999999999998875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.15  E-value=0.00032  Score=55.47  Aligned_cols=30  Identities=30%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -.+|.+|.+.|++||||||+++.|...+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            357999999999999999999999887653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.15  E-value=0.00017  Score=62.66  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=32.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|++ +...+.+|+++.|.|++|+|||||+..++...
T Consensus       191 ~~LD~-~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          191 TELDR-MTSGFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             HHHHH-HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHh-hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788 77789999999999999999999999998755

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00032  Score=52.79  Aligned_cols=27  Identities=30%  Similarity=0.220  Sum_probs=23.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+...++++|++|||||||++.|.+..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.12  E-value=0.0003  Score=55.15  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=24.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +|.+|.+.|++||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999988774

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.11  E-value=0.00031  Score=51.23  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.++++|++|+|||||++.+.+..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.10  E-value=0.0003  Score=52.02  Aligned_cols=26  Identities=38%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++...|+++|++|+|||||++.+.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999763

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.10  E-value=0.00032  Score=54.61  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|..+.|+||||||||||+..|+...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            68899999999999999998887654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00037  Score=60.39  Aligned_cols=34  Identities=21%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +.++++.=+.+.||+|||||+|++.+++..+.+.
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f  243 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATF  243 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence            4566777799999999999999999999887654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.10  E-value=0.00056  Score=54.12  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+..+.-+.|.||+|+||||+++.++..++.+.
T Consensus        35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~   67 (262)
T 2qz4_A           35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF   67 (262)
T ss_dssp             -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345556688999999999999999999876543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.09  E-value=0.00023  Score=59.97  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             cccccccc-CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIA-PSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vs-l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+..+. =.+++|+++.|.|++|||||||+..++...
T Consensus        47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44555223 368899999999999999999998887654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.09  E-value=0.00033  Score=50.76  Aligned_cols=24  Identities=17%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|||||||++.+.+..
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            368999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.09  E-value=0.00044  Score=50.67  Aligned_cols=27  Identities=26%  Similarity=0.249  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++...++++|++|+|||||++.+.+..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            455789999999999999999997643

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.08  E-value=0.00046  Score=55.90  Aligned_cols=30  Identities=17%  Similarity=0.192  Sum_probs=25.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++.-+.|.||+|+||||+++.+++.++.+
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~   81 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECSAT   81 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence            356789999999999999999999987543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.08  E-value=0.00036  Score=50.61  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|++|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.07  E-value=0.0004  Score=51.56  Aligned_cols=27  Identities=15%  Similarity=0.184  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+..+.|.||+|+||||+++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999998876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.07  E-value=0.0003  Score=60.74  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...++|+|+||||||||++.|+|..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCc
Confidence            4689999999999999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.07  E-value=0.00039  Score=50.49  Aligned_cols=25  Identities=12%  Similarity=0.403  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...++++|++|+|||||++.+.+..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            3578999999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.06  E-value=0.0004  Score=58.17  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+..+.=.+++|+++.|.|++|||||||+..++..
T Consensus       110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344422236899999999999999999999999875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.06  E-value=0.00026  Score=57.05  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|||||||++.|.|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.06  E-value=0.00017  Score=57.87  Aligned_cols=29  Identities=24%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+++.+|+|.|+.||||||+++.|+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46789999999999999999999988774

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.05  E-value=0.00039  Score=53.92  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=24.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+..+.|.||+|+||||+++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999999988764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.05  E-value=0.00035  Score=56.78  Aligned_cols=28  Identities=21%  Similarity=0.132  Sum_probs=24.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +...+.|.||+|+||||+++.|++.+..
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            3468999999999999999999998744

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.04  E-value=0.00046  Score=55.51  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +..+.-+.|.||+|+||||+++.+++.++.+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~   79 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETNATF   79 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            45677799999999999999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.04  E-value=0.0004  Score=50.48  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|+|||||++.+.+.-
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            578999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.03  E-value=0.00042  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            478999999999999999998753

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.02  E-value=0.00048  Score=53.66  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++.|+||.||||+|.++.|+..++...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~   28 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVH   28 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence            688999999999999999999887543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.02  E-value=0.00026  Score=60.59  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=25.0

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .+..+..++|+|++|+|||||++.|.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5678889999999999999999999876

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.02  E-value=0.00054  Score=51.40  Aligned_cols=26  Identities=15%  Similarity=0.380  Sum_probs=22.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...|+++|++|+|||||++.|.+..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            45679999999999999999998853

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.01  E-value=0.00044  Score=50.50  Aligned_cols=24  Identities=17%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.++++|++|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.01  E-value=0.00042  Score=50.61  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.++++|++|+|||||++.+.+.-
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            468999999999999999998643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.01  E-value=0.00044  Score=50.42  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.++++|++|+|||||++.+.+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.00  E-value=0.00045  Score=50.29  Aligned_cols=23  Identities=13%  Similarity=0.485  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++|++|+|||||++.+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.00  E-value=0.00058  Score=56.99  Aligned_cols=30  Identities=20%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             CCCe--EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPF--VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~--iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+.  .+.|.||+|+|||||++.+++.+...
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            3455  89999999999999999999988654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.00  E-value=0.00047  Score=50.93  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...++++|++|||||||++.+.+..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            34579999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.99  E-value=0.00046  Score=50.90  Aligned_cols=24  Identities=17%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|+|||||++.+.+..
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998743

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.98  E-value=0.0005  Score=50.75  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +...++++|++|+|||||++.+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457999999999999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.98  E-value=0.00041  Score=50.71  Aligned_cols=24  Identities=13%  Similarity=0.516  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ...|+++|++|+|||||++.+.+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            357899999999999999999864

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.94  E-value=0.00074  Score=52.25  Aligned_cols=29  Identities=34%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..+|+|.|+.||||||+.+.|+..++.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~   34 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPL   34 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence            45899999999999999999999887653

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.94  E-value=0.00049  Score=60.81  Aligned_cols=30  Identities=7%  Similarity=0.130  Sum_probs=27.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+.|.++.++|.|||||||+.+.|+..++.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999998874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.94  E-value=0.00055  Score=49.88  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++|++|+|||||++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.93  E-value=0.00034  Score=59.24  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             CCeE-EEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFV-IGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~i-v~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|.. ++|+|++|||||||++.|++..
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            3444 9999999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.92  E-value=0.00047  Score=50.69  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .-.++++|++|+|||||++.+.+..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC
Confidence            3579999999999999999997643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.92  E-value=0.00045  Score=57.35  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+..+.|.||+|+|||||++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999876

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.92  E-value=0.00042  Score=50.73  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .++++|++|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.92  E-value=0.00057  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.202  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...|+|+|++|+|||||++.+.+..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998743

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.92  E-value=0.00059  Score=50.81  Aligned_cols=24  Identities=17%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+++|++|+|||||++.|.+..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            468999999999999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.00056  Score=52.77  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=23.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +-..++|+|.+|||||||++.|++.+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            346899999999999999999988753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.91  E-value=0.00042  Score=51.87  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .-..++++|++|||||||++.+.+.-
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            34589999999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.90  E-value=0.00061  Score=51.34  Aligned_cols=26  Identities=23%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +-..++|+|++|+|||||++.+++..
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999998887653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.90  E-value=0.0006  Score=51.32  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..-..|+|+|++|+|||||++.|.+.-
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence            344679999999999999999998743

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.90  E-value=0.00058  Score=51.36  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .....++++|++|+|||||++.|.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34578999999999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.90  E-value=0.00062  Score=51.98  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=22.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..+.|.||+|+|||||++.++..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.90  E-value=0.00063  Score=49.50  Aligned_cols=23  Identities=35%  Similarity=0.289  Sum_probs=20.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|++|+|||||++.+.+..
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.89  E-value=0.0006  Score=50.22  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++|++|+|||||++.+.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.88  E-value=0.00064  Score=50.97  Aligned_cols=26  Identities=15%  Similarity=0.451  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...|+++|.+|+|||||++.|++..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence            34689999999999999999998753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.88  E-value=0.00071  Score=50.12  Aligned_cols=27  Identities=19%  Similarity=0.111  Sum_probs=22.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.-.++++|++|+|||||++.+.+..
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            344679999999999999999998643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.88  E-value=0.00054  Score=50.86  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=23.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+..+.|.||+|+||||+++.++..+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998876

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.87  E-value=0.00067  Score=50.32  Aligned_cols=26  Identities=12%  Similarity=0.218  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...|+++|++|+|||||++.+.+..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC
Confidence            34679999999999999999998743

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00067  Score=50.14  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.++++|++|+|||||++.+.+..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34579999999999999999998754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.86  E-value=0.00034  Score=55.83  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=26.1

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.....+|  +.|.||+|+||||+++.|++.+..+
T Consensus        39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~   71 (268)
T 2r62_A           39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAHVP   71 (268)
T ss_dssp             HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred             CCCCCCce--EEEECCCCCcHHHHHHHHHHHhCCC
Confidence            34444555  7899999999999999999887644

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.86  E-value=0.0007  Score=49.85  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -..++++|++|+|||||++.+.+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4579999999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.84  E-value=0.00074  Score=49.97  Aligned_cols=24  Identities=13%  Similarity=0.340  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|+|||||++.+.+..
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            578999999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.84  E-value=0.00091  Score=50.33  Aligned_cols=25  Identities=12%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ....|+++|++|+|||||++.+.+.
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3467999999999999999999874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.84  E-value=0.00075  Score=50.57  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .+...++++|++|+|||||++.+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.84  E-value=0.00071  Score=49.94  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .-.++++|++|+|||||++.+.+..
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCc
Confidence            4579999999999999999998643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.83  E-value=0.00063  Score=49.60  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++|++|+|||||++.+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCc
Confidence            36899999999999999998653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.83  E-value=0.00072  Score=50.34  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ....++++|++|+|||||++.+.+..
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCC
Confidence            34679999999999999999998754

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=96.82  E-value=0.00013  Score=53.96  Aligned_cols=45  Identities=7%  Similarity=-0.088  Sum_probs=31.2

Q ss_pred             eecceecCCeeeeeeEE------eccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         135 YEGKRCAVSKICGVSIL------RAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       135 ~~g~~lSgGq~Qrvaia------RA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ..+.+|||||+||++||      ||+..                     +.+.+.+.... +.++|.++||.+
T Consensus        53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~  124 (148)
T 1f2t_B           53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE  124 (148)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG
T ss_pred             CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH
Confidence            35678999999999876      66643                     44444443332 567899999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.82  E-value=0.00051  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.82  E-value=0.0013  Score=53.65  Aligned_cols=33  Identities=21%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .++.+..+.+.||+|+|||+|++.|+..++.+.
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~   64 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINP   64 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345567888999999999999999999886543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.82  E-value=0.00044  Score=51.08  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -..|+++|++|+|||||++.|.+.
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.82  E-value=0.00054  Score=55.59  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+++|++|||||||++.|.|.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            57999999999999999999874

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.81  E-value=0.0014  Score=56.95  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccch
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF   91 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~   91 (199)
                      ++.+++++|++||||||++..|+..+..  ..+.++..|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            5799999999999999999999987743  23444555543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.81  E-value=0.00088  Score=51.46  Aligned_cols=25  Identities=32%  Similarity=0.287  Sum_probs=22.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...++++|++|+|||||++.|.+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998864

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.81  E-value=0.00071  Score=53.23  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      .+.+|+.++++|++||||||++..++
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            45678999999999999999887664

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.80  E-value=0.00078  Score=50.42  Aligned_cols=26  Identities=35%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -..|+++|++|+|||||++.+.+.+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            35789999999999999998887654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.80  E-value=0.00084  Score=60.15  Aligned_cols=29  Identities=31%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -.+|.+|.|.|.|||||||+++.|...+.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            35678999999999999999999988765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.79  E-value=0.00092  Score=50.73  Aligned_cols=30  Identities=20%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-++...|+|+|++|+|||||++.+.+..
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            344566789999999999999999998753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.79  E-value=0.00057  Score=50.76  Aligned_cols=25  Identities=28%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ++...++++|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            5678999999999999999988863

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.79  E-value=0.00082  Score=50.88  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...|+++|++|+|||||++.+.+..
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            4579999999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.79  E-value=0.00084  Score=49.91  Aligned_cols=26  Identities=12%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +-..|+++|++|+|||||++.+.+..
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            44678999999999999999998653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.79  E-value=0.00081  Score=50.32  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .-.++++|++|+|||||++.+.+..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.78  E-value=0.00083  Score=49.70  Aligned_cols=26  Identities=19%  Similarity=0.483  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...++++|++|+|||||++.+.+.-
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34679999999999999999998743

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.78  E-value=0.00085  Score=50.35  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-..|+++|++|+|||||++.+.+.-
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC
Confidence            334689999999999999999998754

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.78  E-value=0.00061  Score=56.46  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+..+.=.+++|+++.|.|++|||||||+..++...
T Consensus        94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            34455223368899999999999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.78  E-value=0.00084  Score=50.66  Aligned_cols=26  Identities=12%  Similarity=0.423  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.|+++|++|+|||||++.+.+..
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCC
Confidence            34579999999999999999998754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.77  E-value=0.00096  Score=50.83  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -.|.=+.|.|+||+||||++..|+.
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3688899999999999999987765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.77  E-value=0.00065  Score=56.40  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..++. ..+.+ .|.-++|.|+||+||||++..|+.
T Consensus       133 ~~~H~-~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHG-VLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEES-EEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeE-EEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            34555 55555 789999999999999999988877

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.77  E-value=0.00065  Score=55.93  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.-+|+|+|.+|+|||||++.|.+.-
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344689999999999999999998743

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.77  E-value=0.00066  Score=55.85  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +++|+|.+|+|||||++.|.+.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.77  E-value=0.001  Score=51.43  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...++|+|.+|+|||||++.++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.77  E-value=0.00089  Score=50.27  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .-..|+++|++|+|||||++.|.+..
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34579999999999999999998744

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.77  E-value=0.00097  Score=51.18  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=22.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..+.|.||+|+||||+++.++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3899999999999999999988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.76  E-value=0.00093  Score=50.68  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...|+|+|++|+|||||++.|.+..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34579999999999999999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.76  E-value=0.0009  Score=49.63  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .-.++++|++|+|||||++.+.+.
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            357899999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.76  E-value=0.00092  Score=50.17  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +-..|+++|++|+|||||++.+.+..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence            34689999999999999999998643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.75  E-value=0.00082  Score=53.45  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.|+|+|++|||||||++.|++.-
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998743

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.75  E-value=0.0009  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+++|++|+|||||++.+.+.
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            47899999999999999999854

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.74  E-value=0.00079  Score=51.52  Aligned_cols=32  Identities=16%  Similarity=0.096  Sum_probs=25.4

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.+.-.....|+++|++|+|||||++.+.+.-
T Consensus        18 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           18 LYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             -CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence            44444556789999999999999999998743

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.74  E-value=0.00093  Score=50.80  Aligned_cols=28  Identities=29%  Similarity=0.326  Sum_probs=23.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+...|+++|.+|+|||||++.+.+..
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3456789999999999999999998754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.74  E-value=0.0007  Score=55.96  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=31.2

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.|++ +.-.+.+|+++.|.|++|+|||||+..++..
T Consensus        56 ~~LD~-~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           56 TELDR-MTYGYKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             HHHHH-HHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHh-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            56777 6667999999999999999999999888754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.74  E-value=0.00092  Score=50.31  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -..|+|+|++|+|||||++.+.+..
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3579999999999999999998765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.74  E-value=0.00077  Score=50.34  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++.-.++++|++|+|||||++.+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            566789999999999999999997644

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.73  E-value=0.0012  Score=49.90  Aligned_cols=26  Identities=15%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .+.-.|+++|++|+|||||++.+.+.
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.00097  Score=49.96  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++.-.|+++|++|+|||||++.+.+.
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999853

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.71  E-value=0.001  Score=50.50  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+|+|.+|+|||||++.+.+..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~~   30 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGVH   30 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCc
Confidence            579999999999999999998743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.71  E-value=0.00092  Score=50.27  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=23.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++.-.|+++|++|+|||||++.+.+..
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCC
Confidence            3456789999999999999999998743

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.71  E-value=0.00078  Score=56.89  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..+.+.+ -+.+|+|+|||||||++..|.=
T Consensus        19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           19 SRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            4455544 5899999999999999999863

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.71  E-value=0.001  Score=50.02  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+...++++|++|+|||||++.+.+.-
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence            445689999999999999999998743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.71  E-value=0.00074  Score=55.55  Aligned_cols=26  Identities=23%  Similarity=0.083  Sum_probs=23.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+..+.|.||+|+|||||++.+++.+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45679999999999999999999876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.70  E-value=0.00099  Score=51.11  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..-..|+++|++|+|||||++.+.+..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCC
Confidence            344689999999999999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.70  E-value=0.0009  Score=56.73  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++|+|++|+|||||++.|.+..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999864

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.69  E-value=0.0012  Score=51.23  Aligned_cols=26  Identities=35%  Similarity=0.392  Sum_probs=23.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |.+|+|-|.-||||||+++.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999998874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.68  E-value=0.00081  Score=53.95  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|||||||++.|.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.68  E-value=0.0012  Score=50.22  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .....|+++|++|+|||||++.+.+.-
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence            445689999999999999999998643

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.68  E-value=0.0011  Score=59.92  Aligned_cols=26  Identities=35%  Similarity=0.379  Sum_probs=24.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +|.+|.|+|.+||||||+++.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999999877

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.66  E-value=0.0012  Score=49.45  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...|+++|++|+|||||++.|.+..
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCC
Confidence            34589999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.66  E-value=0.0015  Score=51.80  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=24.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ...+||.|+.||||||+++.|+..++..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~   35 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIP   35 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCC
Confidence            4578999999999999999999888654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.66  E-value=0.0011  Score=50.39  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -..|+++|++|+|||||++.|.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998743

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.66  E-value=0.0012  Score=49.77  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.++++|++|+|||||++.+.+..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            34689999999999999999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.64  E-value=0.00065  Score=54.80  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..|+++|.+|+|||||++.|.+
T Consensus         9 ~~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A            9 FTLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.64  E-value=0.001  Score=50.48  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+++|++|+|||||++.+.+.-
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.63  E-value=0.00093  Score=49.86  Aligned_cols=27  Identities=22%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -.+.-.|+++|++|+|||||++.+.+.
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.63  E-value=0.0013  Score=49.43  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.|+++|++|+|||||++.+.+..
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            44689999999999999999998743

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.63  E-value=0.0012  Score=50.52  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...++++|++|+|||||++.+.+..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999998754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.62  E-value=0.0017  Score=54.31  Aligned_cols=30  Identities=33%  Similarity=0.450  Sum_probs=25.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ++.-+.|.||+|+||||+++.|+..++.+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~   79 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPF   79 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            456789999999999999999999886553

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.61  E-value=0.0011  Score=51.66  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +...|+++|++|+|||||++.+.+.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.00076  Score=56.60  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .....++++|++|+|||||++.|++..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.60  E-value=0.0013  Score=50.59  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ....|+++|++|+|||||++.+.+..
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999998753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.60  E-value=0.0013  Score=55.73  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +..++|+|.+|+|||||++.|.+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999983

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.60  E-value=0.001  Score=54.79  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.|+..+.=.+++|+++.|.|++|||||||+..++..
T Consensus        85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4455522336889999999999999999999988864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=96.58  E-value=0.0019  Score=50.87  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=25.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +..+|+|.|++||||||+.+.|+..++.+
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~   41 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIH   41 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence            45799999999999999999999887654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.56  E-value=0.0023  Score=51.22  Aligned_cols=33  Identities=33%  Similarity=0.444  Sum_probs=27.4

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .....-+.|.||+|+||||+++.++...+.+.+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~   93 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI   93 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            456678999999999999999999988765533

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.56  E-value=0.0012  Score=51.71  Aligned_cols=34  Identities=32%  Similarity=0.580  Sum_probs=27.1

Q ss_pred             ccccccccC-CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAP-SMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl-~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      +.|++ +-- -+++|+++.|.|++|+|||||+-.++
T Consensus        17 ~~LD~-~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           17 PGFDE-LIEGGFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTTGG-GTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHH-hhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45555 221 58999999999999999999987765

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.55  E-value=0.0011  Score=54.11  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.|+|+|.+|||||||++.|+|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            479999999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.55  E-value=0.0011  Score=50.50  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .-..|+++|++|+|||||++.+.+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhc
Confidence            3468999999999999999998653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.55  E-value=0.0013  Score=57.01  Aligned_cols=27  Identities=37%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++.+++++|++|+||||++..|++.+.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346999999999999999999998763

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.54  E-value=0.0011  Score=50.48  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .....|+++|++|+|||||++.+.+.
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34468999999999999999999753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.54  E-value=0.00068  Score=52.23  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..-.|+++|.+|+|||||++.|.+.-
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.54  E-value=0.0012  Score=52.92  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++|.+|||||||++.|.+.
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            46999999999999999999874

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.54  E-value=0.0015  Score=49.67  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+++|++|+|||||++.+.+..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            579999999999999999998743

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.53  E-value=0.0019  Score=48.82  Aligned_cols=26  Identities=31%  Similarity=0.253  Sum_probs=22.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -++...|+++|++|+|||||++.+.+
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHh
Confidence            35678899999999999999998854

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.53  E-value=0.0014  Score=52.92  Aligned_cols=25  Identities=36%  Similarity=0.543  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...|+++|.+|||||||++.|.|..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC
Confidence            3579999999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.52  E-value=0.0019  Score=54.16  Aligned_cols=29  Identities=24%  Similarity=0.278  Sum_probs=25.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...+..+++|+|+.|+|||||++.|+..+
T Consensus        75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           75 DSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             GCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999998776

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.52  E-value=0.0016  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|++|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            579999999999999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.51  E-value=0.00083  Score=50.46  Aligned_cols=27  Identities=30%  Similarity=0.233  Sum_probs=22.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.-.|+++|++|+|||||++.+.+..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999997654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.51  E-value=0.0014  Score=49.58  Aligned_cols=27  Identities=19%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..+.-.|+++|++|+|||||++.+.+.
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999999753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.50  E-value=0.0018  Score=52.56  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+.-+.|.||+|+||||+++.++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            445679999999999999999998776

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.50  E-value=0.0018  Score=49.40  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .+.-.|+++|++|+|||||++.+.+.
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999863

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.47  E-value=0.0017  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.|.||+|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999998765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.47  E-value=0.00094  Score=49.63  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=10.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ...|+++|++|+|||||++.+.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.47  E-value=0.0014  Score=50.33  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .-..|+|+|++|+|||||++.|.+.
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcC
Confidence            3457999999999999999998764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.44  E-value=0.0026  Score=51.37  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=24.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+.-+.|.||+|+||||+++.++..++.+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~   77 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAP   77 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34567899999999999999999988654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.44  E-value=0.0018  Score=48.64  Aligned_cols=27  Identities=26%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -.....|+++|.+|+|||||++.+.+.
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            345568999999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.43  E-value=0.0016  Score=56.84  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=28.3

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +++. + ..+-+|+.++|.|+||+|||||++.|+...
T Consensus       141 ~ID~-L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          141 VVDL-L-APYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             HHHH-H-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             HHHH-H-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            4444 3 455689999999999999999999998754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.43  E-value=0.0019  Score=46.96  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+.-+.|.||+|+|||++++.|....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            455568999999999999999997754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.43  E-value=0.0018  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .-.|+++|++|+|||||++.|.+.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            356999999999999999998753

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.42  E-value=0.0023  Score=50.03  Aligned_cols=26  Identities=42%  Similarity=0.636  Sum_probs=21.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .-|||+|..||||||+++.|.. ++.+
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~   35 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGAS   35 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence            3589999999999999999876 5543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.42  E-value=0.00095  Score=55.05  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=25.2

Q ss_pred             ccCCCCCC--eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          47 IAPSMVEP--FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        47 vsl~i~~g--~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.-.+..|  ..+.|.||+|+||||+++.+++.+.
T Consensus        49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33334444  3499999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.42  E-value=0.0016  Score=50.12  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.-.|+++|++|+|||||++.+.+.
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.42  E-value=0.002  Score=49.06  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .....|+++|++|+|||||++.+.+..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence            334679999999999999999997643

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.41  E-value=0.0022  Score=48.82  Aligned_cols=24  Identities=33%  Similarity=0.259  Sum_probs=20.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +|.++.+.|+.||||||++-.++.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999855543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.41  E-value=0.0016  Score=56.24  Aligned_cols=25  Identities=28%  Similarity=0.224  Sum_probs=22.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +..+.|.||+|+|||||++.|++.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5679999999999999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.41  E-value=0.0019  Score=53.63  Aligned_cols=28  Identities=29%  Similarity=0.331  Sum_probs=24.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -..+..+.|.||+|+||||+++.++..+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3567789999999999999999998876

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.40  E-value=0.0014  Score=52.89  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=22.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .-.|+++|.+|+|||||++.|+|.-
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            3479999999999999999998753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.40  E-value=0.0041  Score=51.38  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=24.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++.-+.|.||+|+|||||++.++..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            4556788999999999999999999887

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.39  E-value=0.0016  Score=52.30  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...++++|.+|+|||||++.|.+.-
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999998743

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.37  E-value=0.003  Score=52.01  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=26.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..++.-+.|.||+|+|||++++.++...+.+
T Consensus        48 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~   78 (322)
T 3eie_A           48 RKPTSGILLYGPPGTGKSYLAKAVATEANST   78 (322)
T ss_dssp             CCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence            3455679999999999999999999887644

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.36  E-value=0.0025  Score=56.35  Aligned_cols=28  Identities=39%  Similarity=0.491  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..+.+|.++|.+||||||+++.|+..++
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999987663

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.36  E-value=0.0019  Score=51.63  Aligned_cols=26  Identities=15%  Similarity=0.344  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.|+++|.+|+|||||++.|.+.-
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998743

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.36  E-value=0.0022  Score=57.08  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.+.++.++|.+||||||+++.|...+.
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            4578999999999999999999987653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.35  E-value=0.0018  Score=49.08  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...++++|.+|+|||||++.+.+.+
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcC
Confidence            44689999999999999999887754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.35  E-value=0.003  Score=48.16  Aligned_cols=26  Identities=19%  Similarity=0.088  Sum_probs=22.4

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.-.++++|++|+|||||++.+.+..
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            44679999999999999999998643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.34  E-value=0.0017  Score=48.58  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=21.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ++.-.++++|++|+|||||++.+.+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            4677899999999999999988853

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.0024  Score=49.37  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -..|+|+|++|+|||||++.+.+.-
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998743

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.34  E-value=0.0032  Score=51.79  Aligned_cols=28  Identities=29%  Similarity=0.197  Sum_probs=24.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ...+.|.||+|+||||+++.++..++.+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~   82 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSAN   82 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence            3468999999999999999999887655

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.34  E-value=0.0033  Score=52.66  Aligned_cols=30  Identities=23%  Similarity=0.226  Sum_probs=25.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+.-+.|.||+|+||||+++.|+..++.+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~  144 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGAT  144 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            456789999999999999999999887543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.33  E-value=0.0024  Score=49.23  Aligned_cols=27  Identities=19%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+...|+++|.+|+|||||++.+.+.-
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCC
Confidence            445689999999999999999998753

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.33  E-value=0.0018  Score=54.21  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+. +.-.+.+|+++.|.|++|+|||||+..++...
T Consensus        34 ~~LD~-~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           34 VQLDN-YTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             HHHHH-HHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hHHHH-HhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45667 55589999999999999999999998887644

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.33  E-value=0.0026  Score=55.37  Aligned_cols=28  Identities=36%  Similarity=0.434  Sum_probs=23.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..+.+|.++|.+||||||+++.|+..+.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999987653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.29  E-value=0.0036  Score=52.58  Aligned_cols=29  Identities=31%  Similarity=0.462  Sum_probs=24.8

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+..+.|.||+|+||||+++.|+..++.+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~   99 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIP   99 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34568899999999999999999988654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.002  Score=50.09  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ...|+|+|.+|+|||||++.+.+.
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999999753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.26  E-value=0.001  Score=50.39  Aligned_cols=25  Identities=12%  Similarity=0.278  Sum_probs=6.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..-.|+++|++|+|||||++.+.+.
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4468999999999999999998875

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.25  E-value=0.0021  Score=49.06  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy9640          57 IGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +.|+|++||||||++..++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999988744

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.24  E-value=0.0029  Score=52.56  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=26.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ...+|..+.|.||+|+||||+++.++..+..
T Consensus        66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3445678999999999999999999998864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.23  E-value=0.0036  Score=55.22  Aligned_cols=39  Identities=28%  Similarity=0.197  Sum_probs=28.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeecccc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDS   90 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d~   90 (199)
                      .++.+|+|+|++||||||++..|+..+.  ...+.++..|.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            5678999999999999999999997653  23444454443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.21  E-value=0.0041  Score=54.00  Aligned_cols=28  Identities=29%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .-+.+.||+|+||||+++.|++.++.+.
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~~~   78 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANAPF   78 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence            3488999999999999999999987654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.20  E-value=0.0024  Score=53.89  Aligned_cols=38  Identities=21%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             cccccccc-CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIA-PSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vs-l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+..+. =-+++|.++.|.|++|||||||+..++...
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            44555112 248899999999999999999998887644

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.20  E-value=0.0042  Score=53.74  Aligned_cols=43  Identities=28%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC---CCeeeeecccc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN---VPWVTLLSMDS   90 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~---~~~~~~i~~d~   90 (199)
                      ++.-.++.+++++|++|+||||++..|+..+.   ...+.++..|.
T Consensus        94 ~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A           94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            33334678999999999999999999997763   33455555554

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=96.16  E-value=0.00057  Score=51.88  Aligned_cols=43  Identities=7%  Similarity=-0.007  Sum_probs=31.6

Q ss_pred             ecceecCCeeeeeeEEeccch-------------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         136 EGKRCAVSKICGVSILRAGET-------------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       136 ~g~~lSgGq~QrvaiaRA~~~-------------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ....|||||+||++|||++..                         +.+.+.+...+  .++|.++|+..
T Consensus        61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~--~~~ivith~~~  128 (173)
T 3kta_B           61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE--SQFIVITLRDV  128 (173)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSCHH
T ss_pred             ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC--CEEEEEEecHH
Confidence            456899999999999999951                         44555555555  34688888754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.15  E-value=0.0035  Score=54.15  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+. +.-.+.+|+++.|.|++|+|||||+..++...
T Consensus       188 ~~LD~-~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          188 KELDQ-LIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHH-HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             Hhhhh-hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34566 44568999999999999999999998887644

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.13  E-value=0.00093  Score=51.32  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999988753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.13  E-value=0.0041  Score=52.12  Aligned_cols=30  Identities=20%  Similarity=0.207  Sum_probs=25.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++.-+.|.||+|+|||||++.++..++.+
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~  111 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEANST  111 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            444568899999999999999999987644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.13  E-value=0.0016  Score=56.47  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+|+|.+|+|||||++.|.+.
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            47999999999999999999763

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.12  E-value=0.0027  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..++++|.+|+|||||++.|.+..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            689999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	3e-15
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	5e-10
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	4e-13
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	3e-12
d1o5oa_	210	c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga marit	4e-12
d1i5ea_	208	c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldoly	1e-11
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	7e-11
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	2e-06
d1bd3a_	224	c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondi	1e-09
d1v9sa1	208	c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus the	1e-09
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	3e-09
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	4e-08
d1xtta1	215	c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus	4e-08
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	3e-06
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	4e-06
d1jjva_	205	c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus in	4e-05
d1vhta_	208	c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia co	9e-05
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	3e-04
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	4e-04
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	8e-04
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	0.001
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	0.001
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.001
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.002
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	0.002
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	0.003
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.004

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 43/120 (35%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           +K+ V    ++   +++ RD   RG   E V    +     A+   I P           
Sbjct: 149 LKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQF--------- 198

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                               DI   R      +   I + I + 
Sbjct: 199 ---------------------------------SQTDINFQRVPVVDTSNPFIARWIPTA 225

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 54.9 bits (132), Expect = 5e-10
 Identities = 9/96 (9%), Positives = 24/96 (25%), Gaps = 17/96 (17%)

Query: 52  VEPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFYRVHADIIVPRGGE---- 105
            +  +I + G S +G +TV     +           +  D+F+R +   +          
Sbjct: 2   KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAA 61

Query: 106 ----------NCVAIDLIVQHIHSQLQAGVSVDMPQ 131
                         +  + +    +           
Sbjct: 62  GDATFSHFSYEANELKELERVFR-EYGETGQGRTRT 96

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 4e-13
 Identities = 48/121 (39%), Positives = 60/121 (49%), Gaps = 42/121 (34%)

Query: 1   MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGIC 60
           MK+FVDTDAD RL+RR+ RDI  RGRDLE ++ QY+  VKPAF  F  P           
Sbjct: 133 MKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP----------- 181

Query: 61  GGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQHIHSQ 120
                                           + +AD+I+PRG +N VAI+LIVQHI   
Sbjct: 182 -------------------------------TKKYADVIIPRGADNLVAINLIVQHIQDI 210

Query: 121 L 121
           L
Sbjct: 211 L 211

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-12
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNV-------PWVTLLSMDSFYRVHADIIVPRGGE 105
           EPF+IG+ GG+ASGK++V  KI++ L           V +LS DSFYRV       +  +
Sbjct: 1   EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 60

Query: 106 NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYE 136
                D      + +L      ++ +G T +
Sbjct: 61  GQFNFDHPDAFDN-ELILKTLKEITEGKTVQ 90

>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]} Length = 210

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.4 bits (146), Expect = 4e-12
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
           V V+ P   T  G R     I  V ILRAG  M   + ++  +  +G I I  +  T + 
Sbjct: 54  VEVETPITKTI-GYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQA 112

Query: 185 ELYYLRLPKDIKD 197
             YY +LP    D
Sbjct: 113 VEYYAKLPPLNDD 125

>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]} Length = 208

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Bacillus caldolyticus [TaxId: 1394]

 Score = 58.8 bits (142), Expect = 1e-11
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 112 LIVQHIHSQLQ-AGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
           L+   I   L    V ++ P          A  K+  + ILRAG  M   +  +    ++
Sbjct: 38  LMAFEITRDLPLEEVEIETPVSKARAK-VIAGKKLGVIPILRAGIGMVDGILKLIPAAKV 96

Query: 171 GKILIQTNKATDEPELYYLRLPKDIKD 197
           G I +  +  T +P  YY++LP D+++
Sbjct: 97  GHIGLYRDPQTLKPVEYYVKLPSDVEE 123

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (139), Expect = 7e-11
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHADI-----IVPRG 103
            P++I I G  A GK+T A  +   L+       V L++ D F   +  +     +  +G
Sbjct: 79  IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKG 138

Query: 104 GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCA 141
                 +  +V+ +        +V  P           
Sbjct: 139 FPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIP 176

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 29/111 (26%)

Query: 1   MKVFVDTDADVRLARRLKRDILARG---RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVI 57
             ++VD   D+     + R +  R     D +     Y  + K                 
Sbjct: 217 FSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKT----------- 265

Query: 58  GICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCV 108
                        A  + + +N   +    + +  R  A +I+ +   + V
Sbjct: 266 -------------AMTLWKEINWLNLKQNILPT--RERASLILTKSANHAV 301

>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]} Length = 224

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Toxoplasma gondii [TaxId: 5811]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
             V  P   +Y G     SKICGVSI+RAGE+ME  +  VC+ +RIGKILIQ ++ T EP
Sbjct: 66  KEVTTPLDVSYHGVS-FYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEP 124

Query: 185 ELYYLRLPKDIKD 197
           +L Y +LP DI++
Sbjct: 125 KLIYEKLPADIRE 137

>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]} Length = 208

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermus thermophilus [TaxId: 274]

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEP 184
            +V+ P       K  +  K+  V+ILRAG  M + +  +    R+G I +  +  +  P
Sbjct: 52  TTVETPIAPAR-VKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNP 110

Query: 185 ELYYLRLPKDIKD 197
             YY++LP DI +
Sbjct: 111 VQYYIKLPPDIAE 123

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 53 EPFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSFYRVHAD 97
           P  I   G   SGK+  + +I   L         +   S+D FY  H D
Sbjct: 26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHED 75

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 49.4 bits (116), Expect = 4e-08
 Identities = 15/83 (18%), Positives = 29/83 (34%)

Query: 54  PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
             V+GI G S SGKTT+A ++ ++L    +++        +         G         
Sbjct: 22  RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYY 81

Query: 114 VQHIHSQLQAGVSVDMPQGYTYE 136
           +Q     L   +   +   +   
Sbjct: 82  LQWDVEWLTHQLFRQLKASHQLT 104

>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]} Length = 215

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 125 VSVDMPQGYTYEGKRCA-VSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATD- 182
           V V+ P G   +G     ++ I  ++ILRA   + + +       R G I     +    
Sbjct: 51  VEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGK 110

Query: 183 ------EPELYYLRLPKDI 195
                 +  +YY ++P   
Sbjct: 111 EVPKDMDVYIYYKKIPDIR 129

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGE-NCVAID 111
           +PF + I G   SGKTT      +  N   +    ++ +  V+   ++    +       
Sbjct: 8   QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAM 67

Query: 112 LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRI 170
               ++   +    +    +      +    ++ C V  +R   ++EQ +++  ++   
Sbjct: 68  PFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 53 EPFVIGICGGSASGKTTVATKIIESLNVPWV 83
           P +IGI G   SGK+TVA  ++ S   P +
Sbjct: 2  HPIIIGITGNIGSGKSTVA-ALLRSWGYPVL 31

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 54 PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
           +++G+ GG  SGKTT+A  +   L VP V     D   R
Sbjct: 2  TYIVGLTGGIGSGKTTIA-NLFTDLGVPLV---DADVVAR 37

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPWV 83
          S+   +++ + GG  SGK+TVA      L +  +
Sbjct: 1  SL--RYIVALTGGIGSGKSTVA-NAFADLGINVI 31

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 55 FVIGICGGSASGKTTVATKIIESLNVPWV 83
           +I + G   SGK T A  I+ + +    
Sbjct: 2  KLIFLSGVKRSGKDTTADFIMSNYSAVKY 30

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 6/140 (4%)

Query: 54  PFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYRVHADIIVPRGGENCVAID 111
           P +I + G  A GKT ++ K+   LN         ++  + R        +  E  +  +
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT--YKSFEFFLPDN 59

Query: 112 LIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIG 171
                I  Q       D+ +  + EG   AV      +  R    M     +        
Sbjct: 60  EEGLKIRKQCALAALNDVRKFLSEEGGHVAV--FDATNTTRERRAMIFNFGEQNGYKTFF 117

Query: 172 KILIQTNKATDEPELYYLRL 191
              I  +       +  ++L
Sbjct: 118 VESICVDPEVIAANIVQVKL 137

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP-RGGENCVAID 111
            P V+   G   +GK+T   + + S     V   ++ S+ R  +      R G+  V  +
Sbjct: 13  NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDN 72

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 26/139 (18%), Positives = 39/139 (28%), Gaps = 3/139 (2%)

Query: 53  EPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDL 112
           +P  + I G  ASGK T    I     +  +   S     R         G      ++ 
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHI---SAGDLLRAEIAAGSENGKRAKEFMEK 58

Query: 113 IVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGK 172
                   +   V   + Q    E            S   A ET+E             +
Sbjct: 59  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDE 118

Query: 173 ILIQTNKATDEPELYYLRL 191
           +L++     D  E   LRL
Sbjct: 119 LLVERVVFDDTEEKVKLRL 137

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 54  PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRG 103
              I I G ++SGK+TVA  I +         L   + YR    + +   
Sbjct: 3   TIQIAIDGPASSGKSTVAKIIAKDFGFT---YLDTGAMYRAATYMALKNQ 49

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 56  VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVP 101
           +I + GGS++GK+ +   +   L  PW+    +DS        +  
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQS 49

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 56  VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLIVQ 115
           VI I G S +GK T+   + E+L      LL   + YRV A   +    +      L+  
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQWH---LLDSGAIYRVLALAALHHHVDVASEDALVPL 61

Query: 116 HIH 118
             H
Sbjct: 62  ASH 64

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 56 VIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR 93
          ++ + G   SGK+T+A  +     VP V     D  + 
Sbjct: 6  ILLLSGHPGSGKSTIAEALANLPGVPKV-HFHSDDLWG 42

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 5/137 (3%)

Query: 54  PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
           P V+ + GG  +GK T   +I+E         LS     R   +   P      +    I
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTH---LSAGELLR--DERKNPDSQYGELIEKYI 55

Query: 114 VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKI 173
            +     ++  +S+   +           +K       R  + ++     +     +  +
Sbjct: 56  KEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFV 115

Query: 174 LIQTNKATDEPELYYLR 190
           L          E    R
Sbjct: 116 LFFDCNNEICIERCLER 132

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 15/165 (9%)

Query: 41  PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIV 100
           PAFS           VI + GG  +GK T   K+++  +   +   S     R       
Sbjct: 1   PAFSPDQVS------VIFVLGGPGAGKGTQCEKLVKDYSFVHL---SAGDLLRAEQGRAG 51

Query: 101 PRGGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRA------G 154
            + GE         Q +  ++   +  +         K   +       + +A       
Sbjct: 52  SQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI 111

Query: 155 ETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDYK 199
              +  +   C +  + + L++  K +   +     + K    +K
Sbjct: 112 VESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFK 156

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 13/122 (10%), Positives = 25/122 (20%), Gaps = 3/122 (2%)

Query: 54  PFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVHADIIVPRGGENCVAIDLI 113
           P V+ + GG  SGK T    I+       +   S     R         G      I   
Sbjct: 6   PNVVFVLGGPGSGKGTQCANIVRDFGWVHL---SAGDLLRQEQQSGSKDGEMIATMIKNG 62

Query: 114 VQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKI 173
                      +   +              +    +        +             + 
Sbjct: 63  EIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122

Query: 174 LI 175
           ++
Sbjct: 123 VM 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.96
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.95
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.93
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.93
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.9
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.89
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.89
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.88
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.87
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.85
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.81
d1i5ea_	208	Uracil PRTase, Upp {Bacillus caldolyticus [TaxId:	99.19
d1bd3a_	224	Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811	99.15
d1o5oa_	210	Uracil PRTase, Upp {Thermotoga maritima [TaxId: 23	99.12
d1v9sa1	208	Uracil PRTase, Upp {Thermus thermophilus [TaxId: 2	99.07
d1xtta1	215	Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId	98.97
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.7
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.58
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.52
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.49
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.41
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.24
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.22
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.18
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.18
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.13
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.09
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.08
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.07
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.05
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.01
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.98
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.94
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.94
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.92
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.89
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.86
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.84
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.82
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.82
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.78
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.78
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.78
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.76
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.76
d1okkd2	207	GTPase domain of the signal recognition particle r	97.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.76
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.72
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.72
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.71
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.7
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.7
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.7
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.69
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.67
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.66
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.64
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.64
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.58
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.58
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.54
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.54
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.53
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.51
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.49
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.47
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.46
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.43
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.42
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.4
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.38
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.37
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.37
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.37
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.34
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.34
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.34
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.31
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.3
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.3
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.3
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.3
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.29
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.27
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.23
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.23
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.23
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.2
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.19
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.18
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.18
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.15
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.15
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.13
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.1
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.1
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.08
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.07
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.06
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.02
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.02
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.01
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.98
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.98
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.98
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.97
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.96
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.95
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.92
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.91
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.89
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.88
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.86
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.84
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.84
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.84
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.81
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.79
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.78
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.77
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.77
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.76
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.75
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.73
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.68
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.66
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.58
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.58
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.58
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.56
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.55
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.54
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.54
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.54
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.52
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.51
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.49
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.49
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.48
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.45
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.45
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.44
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.42
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.4
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.39
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.37
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.36
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.35
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.35
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.35
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.33
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.26
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.25
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.22
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.21
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.19
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.1
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.03
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.0
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.99
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.87
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.86
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.79
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.73
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.68
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.62
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.55
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.42
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.42
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.38
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.37
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.32
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.28
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.17
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.13
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.01
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.0
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.96
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.89
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.88
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.75
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.72
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.57
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.56
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.33
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.19
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.17
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.01
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	94.0
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.9
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.85
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.65
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.56
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.54
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.96
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	92.84
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.82
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.8
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.69
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.61
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.61
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.58
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.41
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.25
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.15
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.1
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.0
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.98
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.8
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.44
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.39
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.35
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.83
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.75
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.23
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.23
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.98
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.91
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.83
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.45
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.39
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.32
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	87.31
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.67
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.53
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.06
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	85.58
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.52
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.63
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.03

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=1.8e-31  Score=215.67  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=111.5

Q ss_pred             ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640          21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------   94 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------   94 (199)
                      ...+.|+++||+|+|++...++|++ |||+|++|+++||+||||||||||+++|+|++.|..+. +..++....      
T Consensus         9 ~~~g~I~~~nvsf~Y~~~~~~~L~~-isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~   86 (253)
T d3b60a1           9 RATGDLEFRNVTFTYPGREVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH-ILMDGHDLREYTLAS   86 (253)
T ss_dssp             CCCCCEEEEEEEECSSSSSCCSEEE-EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE-EEETTEETTTBCHHH
T ss_pred             CCceEEEEEEEEEEeCCCCCceeec-eEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccE-EEECCcccchhhhhh
Confidence            3456799999999998776789999 99999999999999999999999999999999876543 333321100      


Q ss_pred             ---ccc-cccCCC-------------CCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEec
Q psy9640          95 ---HAD-IIVPRG-------------GENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRA  153 (199)
Q Consensus        95 ---~~~-~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA  153 (199)
                         ... ......             .....+.+.+.++++..........+|.++++    .|.+|||||+|||+||||
T Consensus        87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa  166 (253)
T d3b60a1          87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA  166 (253)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence               000 011100             01123345565555333333344567777665    578999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      ++.                     +.+.+.++..+  .|+|.|+||.+.+
T Consensus       167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~--~Tvi~itH~l~~~  214 (253)
T d3b60a1         167 LLRDSPILILDEATSALDTESERAIQAALDELQKN--RTSLVIAHRLSTI  214 (253)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTT--SEEEEECSCGGGT
T ss_pred             HhcCCCEEEeccccccCCHHHHHHHHHHHHHhccC--CEEEEEECCHHHH
Confidence            976                     66677777664  4679999987754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.9e-31  Score=213.89  Aligned_cols=154  Identities=18%  Similarity=0.176  Sum_probs=108.3

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------c
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------V   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------~   94 (199)
                      +|+++||+|+|+...+++|++ |||++++|+++||+|+||||||||+++|+|++.|..+. +..++...          .
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~-isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~lr~~   78 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDN-INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ-VLIDGHDLALADPNWLRRQ   78 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE-EEETTEETTTSCHHHHHHH
T ss_pred             CeEEEEEEEEeCCCCcceEee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCE-EEECCEEecccchhhhhce
Confidence            478999999998766789999 99999999999999999999999999999998876433 33332110          0


Q ss_pred             ccccccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          95 HADIIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        95 ~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      ...+.+....            ......+.+...++..........+|.++++    .|.+|||||+|||+||||++.  
T Consensus        79 i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             EEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            0001111100            1123345555555333333344456666655    678999999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                                         +.+.+.++.++  .++|+|+|+.+.+
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~--~Tvi~itH~l~~~  201 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIAHRLSTV  201 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHTT--SEEEEECSSGGGG
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHhCC--CEEEEEECCHHHH
Confidence                               66777777765  4679999987653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=2.3e-31  Score=214.97  Aligned_cols=158  Identities=18%  Similarity=0.180  Sum_probs=113.4

Q ss_pred             ccccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640          21 ILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------   94 (199)
Q Consensus        21 ~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------   94 (199)
                      ...+.|+++||+|+|++...++|+| |||+|++|+++||+|+||||||||+++|+|++.|..+. +..++....      
T Consensus        12 ~~~g~I~~~nvsf~Y~~~~~~vL~~-isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~-I~i~g~~i~~~~~~~   89 (255)
T d2hyda1          12 IKQGRIDIDHVSFQYNDNEAPILKD-INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ-ILIDGHNIKDFLTGS   89 (255)
T ss_dssp             CCSCCEEEEEEEECSCSSSCCSEEE-EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE-EEETTEEGGGSCHHH
T ss_pred             CCCCEEEEEEEEEEeCCCCCcceec-eEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccc-cccCCEEcccCCHHH
Confidence            3445799999999998876789999 99999999999999999999999999999988876543 333322110      


Q ss_pred             ---ccc-cccCCCC------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEecc
Q psy9640          95 ---HAD-IIVPRGG------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        95 ---~~~-~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~  154 (199)
                         ... .......            ......+++.++++..........+|.++++    .|.+|||||+|||+||||+
T Consensus        90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence               000 1111100            1122345666666444444455678888776    5788999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKATD  182 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~~  182 (199)
                      +.                     +.+.+.+..++  .++|+|+|+.+.+
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~--~TvI~itH~~~~~  216 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDVLSKD--RTTLIVAHRLSTI  216 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSSGGGT
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHH
Confidence            76                     56666666665  4679999988754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.95  E-value=4.3e-30  Score=206.20  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=106.0

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc---------cc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV---------HA   96 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~---------~~   96 (199)
                      |+++||+|+|++. +++|+| |||++++|+++||+||||||||||+++|+|++.|..+.+ ..++....         ..
T Consensus         2 le~knvsf~Y~~~-~~vL~~-isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~g~~i~~~~~~~~r~~i   78 (242)
T d1mv5a_           2 LSARHVDFAYDDS-EQILRD-ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQPIDNISLENWRSQI   78 (242)
T ss_dssp             EEEEEEEECSSSS-SCSEEE-EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE-EETTEESTTTSCSCCTTTC
T ss_pred             EEEEEEEEECCCC-Cceeee-eEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEE-EECCEEeccccHHHHHhhe
Confidence            6899999999764 479999 999999999999999999999999999999998764332 22221000         00


Q ss_pred             c-cccCC-------------CCCCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch--
Q psy9640          97 D-IIVPR-------------GGENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET--  156 (199)
Q Consensus        97 ~-~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~--  156 (199)
                      . +.+..             ........+.+.+.++..........+|.++++    .|.+|||||||||+||||++.  
T Consensus        79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p  158 (242)
T d1mv5a_          79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (242)
T ss_dssp             CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            0 00000             011122344555555444444555667777665    577899999999999999976  


Q ss_pred             -------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         157 -------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       157 -------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                                         +.+.+.+...+  .++|.|+|+.+.
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~--~Tvi~itH~l~~  200 (242)
T d1mv5a_         159 KILMLDEATASLDSESESMVQKALDSLMKG--RTTLVIAHRLST  200 (242)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHHTT--SEEEEECCSHHH
T ss_pred             CEEEecCCccccCHHHHHHHHHHHHHHcCC--CEEEEEECCHHH
Confidence                               77777777664  567999998653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-30  Score=209.13  Aligned_cols=157  Identities=17%  Similarity=0.111  Sum_probs=107.6

Q ss_pred             cccCcccccceeecccc-ccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc------
Q psy9640          22 LARGRDLEGVIKQYVNM-VKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV------   94 (199)
Q Consensus        22 ~~~~i~l~nvs~~y~~~-~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~------   94 (199)
                      .++.|+++||+|+|++. ..++|++ +||++++|++++|+||||||||||+++|+|++.|..+.+ ..|+....      
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~-isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I-~i~g~~i~~~~~~~   85 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQG-LTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL-LLDGKPLPQYEHRY   85 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEEGGGBCHHH
T ss_pred             ccceEEEEEEEEECCCCCCCEeEec-eEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEE-EECCEecchhhhHH
Confidence            45679999999999764 3569999 999999999999999999999999999999998765433 33322110      


Q ss_pred             ---ccc-cccCCCC-------------CCCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEec
Q psy9640          95 ---HAD-IIVPRGG-------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRA  153 (199)
Q Consensus        95 ---~~~-~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA  153 (199)
                         ... ..+....             ........+...............+|.++++    .|.+|||||||||+||||
T Consensus        86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa  165 (251)
T d1jj7a_          86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA  165 (251)
T ss_dssp             HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeec
Confidence               000 1111100             1111223333333222222334456666555    578999999999999999


Q ss_pred             cch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         154 GET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       154 ~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ++.                     +.+.+.++....+.++|.|+||-+
T Consensus       166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~  213 (251)
T d1jj7a_         166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS  213 (251)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred             cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence            976                     566677777766889999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.7e-29  Score=199.02  Aligned_cols=148  Identities=16%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc-------ccccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR-------VHADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~-------~~~~~   98 (199)
                      |+++||+++|.+.  .+|+| |||++++|++++|+||||||||||+++|+|++.|..+.+. .++...       ....+
T Consensus         1 Iev~nv~k~yg~~--~~l~~-isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~-i~g~~i~~~~~~~r~ig~   76 (232)
T d2awna2           1 VQLQNVTKAWGEV--VVSKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF-IGEKRMNDTPPAERGVGM   76 (232)
T ss_dssp             EEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ESSSCCTTSCGGGTCEEE
T ss_pred             CEEEEEEEEECCE--EEEee-eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEE-ECCEECCCCchhhceeee
Confidence            5799999999765  79999 9999999999999999999999999999998877654332 222110       00011


Q ss_pred             ccCC-C-------CCC--------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch------
Q psy9640          99 IVPR-G-------GEN--------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET------  156 (199)
Q Consensus        99 ~~~~-~-------~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~------  156 (199)
                      .+.. .       .+|        ....++..+.+.+.+.   .+.+....+..+.+|||||+|||+||||++.      
T Consensus        77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~---~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill  153 (232)
T d2awna2          77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL  153 (232)
T ss_dssp             ECSSCCC---------------------CHHHHHHHHHHH---HC---------------------CHHHHHHTCCSEEE
T ss_pred             eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            1100 0       000        0011122222222222   2344444466788999999999999999975      


Q ss_pred             ---------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ---------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ---------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                     +.+.+.++..+.+.+.|+++||-+
T Consensus       154 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~  192 (232)
T d2awna2         154 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV  192 (232)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                           677788888888999999999865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=4.2e-29  Score=199.39  Aligned_cols=151  Identities=13%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             ccCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------c
Q psy9640          23 ARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------H   95 (199)
Q Consensus        23 ~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~   95 (199)
                      +..|+++||+++|++.  .+|++ |||++++|++++|+||||||||||+++|+|++.|+.+.+. .++....       .
T Consensus         4 M~~I~v~nlsk~yg~~--~al~~-vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~-i~g~~i~~~~~~~r~   79 (239)
T d1v43a3           4 MVEVKLENLTKRFGNF--TAVNK-LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY-FGDRDVTYLPPKDRN   79 (239)
T ss_dssp             CCCEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCGGGGT
T ss_pred             cCeEEEEEEEEEECCE--EEEcc-eeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE-EcceecccCCcccce
Confidence            4569999999999865  89999 9999999999999999999999999999999987654433 2221100       0


Q ss_pred             ccccc-CCCC---------------CCCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          96 ADIIV-PRGG---------------ENCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        96 ~~~~~-~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      ....+ ....               ....+.++..+.+.+.+.   .++++...+..+.+|||||+|||+||||+..   
T Consensus        80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~  156 (239)
T d1v43a3          80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD  156 (239)
T ss_dssp             EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHH---HTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCChhhhcCChhhCCHHHHHHHHHHhhhccCCC
Confidence            00000 0000               001122233333323232   2334444455788999999999999999975   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                        +.+.+.++..+.++++|+++||-+
T Consensus       157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~  198 (239)
T d1v43a3         157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV  198 (239)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             ceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence                              777788888888999999999865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=5.1e-29  Score=199.14  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=104.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      ..|+++||+++|+.....+|+| |||++++|++++|+||||||||||+++|+|++.|..+.+. .++...          
T Consensus         2 ~~i~v~nlsk~y~~g~~~aL~~-vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~-~~g~~i~~~~~~~~~~   79 (242)
T d1oxxk2           2 VRIIVKNVSKVFKKGKVVALDN-VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY-FDDRLVASNGKLIVPP   79 (242)
T ss_dssp             CCEEEEEEEEEEGGGTEEEEEE-EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE-ETTEEEEETTEESSCG
T ss_pred             CEEEEEeEEEEECCCCEEEEec-eEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEE-ECCEEeecCchhhcch
Confidence            4689999999997654689999 9999999999999999999999999999998877654433 222110          


Q ss_pred             --cccccccCCC--CC--------------CCchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          94 --VHADIIVPRG--GE--------------NCVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 --~~~~~~~~~~--~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ....+.+...  ..              ...+.++..+.+.+.+.   .+.+....+..+.+|||||+|||+||||+.
T Consensus        80 ~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~---~~gL~~~~~~~p~~LSGGqkQRvaiARaL~  156 (242)
T d1oxxk2          80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAK---ILDIHHVLNHFPRELSGAQQQRVALARALV  156 (242)
T ss_dssp             GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHH---HTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             hhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHh---hcChHhhhhCChhhCCHHHHhHHHHHhHHh
Confidence              0011111100  00              01112222233323222   223333345578899999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.++..+.++++|.++||.+
T Consensus       157 ~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~  202 (242)
T d1oxxk2         157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA  202 (242)
T ss_dssp             TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             hcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence            5                     778888888888999999999854

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.1e-28  Score=196.23  Aligned_cols=150  Identities=14%  Similarity=0.065  Sum_probs=102.1

Q ss_pred             cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      |+++||+++|+...  ..+|+| +||++++|++++|+||||||||||+++|+|++.|..+.+ ..++...          
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~-isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I-~~~g~~i~~~~~~~~~~   79 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKN-VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV-YIDNIKTNDLDDDELTK   79 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEE-EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECTTCCHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEec-eEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCccee-EECCEEcCcCChhhcch
Confidence            68999999996532  357999 999999999999999999999999999999887765443 3332110          


Q ss_pred             ---cccccccCCC--CC-----------------CCchHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCeeeeeeE
Q psy9640          94 ---VHADIIVPRG--GE-----------------NCVAIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSKICGVSI  150 (199)
Q Consensus        94 ---~~~~~~~~~~--~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq~Qrvai  150 (199)
                         ....+.+...  ..                 ...+.++..+.+.+.+.   .++++.. .+..+.+|||||+|||+|
T Consensus        80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~~~~~~p~~LSGGqkQRvaI  156 (230)
T d1l2ta_          80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK---MAELEERFANHKPNQLSGGQQQRVAI  156 (230)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH---HTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             hhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHH---hhchhhhhhcCChhhCCHHHHHHHHH
Confidence               0011111110  00                 01122222222223332   2344432 345688999999999999


Q ss_pred             Eeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         151 LRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       151 aRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      |||+..                     +.+.+.++..+.++++|+|+||.+
T Consensus       157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~  207 (230)
T d1l2ta_         157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (230)
T ss_dssp             HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred             HhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH
Confidence            999976                     777888888888999999999854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.94  E-value=8.2e-29  Score=197.91  Aligned_cols=150  Identities=13%  Similarity=0.102  Sum_probs=103.7

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      ..|+++||+++|++.  .+++| |||++++|++++|+||||||||||+++|+|++.|..+.+ ..++...          
T Consensus         2 ~~i~v~nl~k~yg~~--~al~~-vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I-~~~g~~i~~~~~~~~~~   77 (240)
T d1g2912           2 AGVRLVDVWKVFGEV--TAVRE-MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKGIFVP   77 (240)
T ss_dssp             EEEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGTEECC
T ss_pred             CcEEEEeEEEEECCE--EEEcc-eeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEE-EECCEEecccchhhhcc
Confidence            358999999999765  79999 999999999999999999999999999999988765443 3332211          


Q ss_pred             ---cccccccCCCCCCC----------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEecc
Q psy9640          94 ---VHADIIVPRGGENC----------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAG  154 (199)
Q Consensus        94 ---~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~  154 (199)
                         ......+......+                ...++..+.+.+.+.   .+.++...+..+.+|||||+|||+||||+
T Consensus        78 ~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~---~~~l~~~~~~~p~~LSGGqkQRv~IAraL  154 (240)
T d1g2912          78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE---LLGLTELLNRKPRELSGGQRQRVALGRAI  154 (240)
T ss_dssp             GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHTCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             cccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHH---HcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence               01111111111110                111222222222221   23344444557889999999999999999


Q ss_pred             ch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         155 ET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       155 ~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      ..                     +.+.+.++..+.++++|+++||-+
T Consensus       155 ~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~  201 (240)
T d1g2912         155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV  201 (240)
T ss_dssp             HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence            75                     777788888888999999999854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.3e-28  Score=195.25  Aligned_cols=150  Identities=14%  Similarity=0.113  Sum_probs=101.5

Q ss_pred             cccccceeeccccc--cccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc----------
Q psy9640          26 RDLEGVIKQYVNMV--KPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR----------   93 (199)
Q Consensus        26 i~l~nvs~~y~~~~--~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~----------   93 (199)
                      |+++||+++|+...  ..+|+| |||++++|++++|+||||||||||+++|+|+..|..+. +..++...          
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~-vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~-I~~~g~~i~~~~~~~~~~   79 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNN-VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS-VLVDGQELTTLSESELTK   79 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEE-EEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEE-EEETTEEECTTCHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeec-eeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCc-eEEcCeEeeeCChhhhhh
Confidence            68999999996542  368999 99999999999999999999999999999988776543 33332110          


Q ss_pred             --cccccccCCC-CCCC---------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccc
Q psy9640          94 --VHADIIVPRG-GENC---------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGE  155 (199)
Q Consensus        94 --~~~~~~~~~~-~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~  155 (199)
                        ....+.+... ....               ...++..+.+.+.+.   .+.++...+..+.+|||||+|||+||||+.
T Consensus        80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~---~vgL~~~~~~~~~~LSGG~~QRvaiAraL~  156 (240)
T d3dhwc1          80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS---LVGLGDKHDSYPSNLSGGQKQRVAIARALA  156 (240)
T ss_dssp             HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHH---HHSTTTTTSSCBSCCCHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHH---HcCCchhhhCChhhCCHHHHHHHHHhhhhc
Confidence              0011111111 1000               011111111111111   223444445678899999999999999997


Q ss_pred             h---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         156 T---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       156 ~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      .                     +.+.+.++..+.++++|+|+||-+
T Consensus       157 ~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~  202 (240)
T d3dhwc1         157 SNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD  202 (240)
T ss_dssp             TCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH
T ss_pred             cCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH
Confidence            5                     778888888888999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.93  E-value=2.3e-27  Score=188.09  Aligned_cols=143  Identities=11%  Similarity=0.057  Sum_probs=99.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~   98 (199)
                      |+++||+++|++   .+|+| |||++++|++++|+||||||||||+++|+|++.|..+.+. .++....       ...+
T Consensus         2 i~v~nlsk~y~~---~aL~~-vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~-~~G~~i~~~~~~~r~ig~   76 (229)
T d3d31a2           2 IEIESLSRKWKN---FSLDN-LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL-LDGKDVTDLSPEKHDIAF   76 (229)
T ss_dssp             EEEEEEEEECSS---CEEEE-EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE-ETTEECTTSCHHHHTCEE
T ss_pred             EEEEEEEEEeCC---EEEee-eEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEE-EccEeccccchhHhccee
Confidence            688999999965   48999 9999999999999999999999999999999887755443 3322110       1111


Q ss_pred             ccCCC--CCCCc---------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          99 IVPRG--GENCV---------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        99 ~~~~~--~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      .+...  ..+..               ..+.+.+.+ +      .+.+....+..+.+|||||+|||+||||++.     
T Consensus        77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l-~------~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iL  149 (229)
T d3d31a2          77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA-R------DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL  149 (229)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHH-H------HTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred             eccccccCccccHHHHHHHHHhhccccHHHHHHHHH-H------HhcchhhHhCChhhCCHHHhcchhhhhhhhccCCce
Confidence            11111  11100               111222222 1      1233333455688999999999999999975     


Q ss_pred             ----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                      +.+.+.++..+.++++|+++||.+
T Consensus       150 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~  189 (229)
T d3d31a2         150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT  189 (229)
T ss_dssp             EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             eecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Confidence                            777788888888999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=4.7e-26  Score=183.96  Aligned_cols=148  Identities=13%  Similarity=0.050  Sum_probs=97.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc----------
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV----------   94 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~----------   94 (199)
                      .|+++||+++|++.  .+|++ |||++++||++||+||||||||||+++|+|++.+..+. +..++....          
T Consensus         2 ~Lev~nl~k~yg~~--~al~~-vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~-I~~~G~~i~~~~~~~~~~~   77 (258)
T d1b0ua_           2 KLHVIDLHKRYGGH--EVLKG-VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA-IIVNGQNINLVRDKDGQLK   77 (258)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE-EEETTEECCEEECTTSSEE
T ss_pred             eEEEEEEEEEECCE--EEEcc-eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCC-EEECCEEeccCCccchhcc
Confidence            58999999999765  79999 99999999999999999999999999999988765543 333322110          


Q ss_pred             ------------ccccccCC-C-CCCC---------------chHHHHHHHHHHHHhcCceeecCCc-eeeecceecCCe
Q psy9640          95 ------------HADIIVPR-G-GENC---------------VAIDLIVQHIHSQLQAGVSVDMPQG-YTYEGKRCAVSK  144 (199)
Q Consensus        95 ------------~~~~~~~~-~-~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~g~~lSgGq  144 (199)
                                  ...+.+.. . ..+.               ....+..+.+.+.+.   .+.+... .+..+.+|||||
T Consensus        78 ~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~p~~LSGG~  154 (258)
T d1b0ua_          78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA---KVGIDERAQGKYPVHLSGGQ  154 (258)
T ss_dssp             ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---HTTCCHHHHTSCGGGSCHHH
T ss_pred             cccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHH---HcCCchhhhccCcccccHHH
Confidence                        00111111 1 1000               011111222212221   1222221 233577999999


Q ss_pred             eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                      +|||+||||+..                     +.+.+.++... +.+.|+|+||-+
T Consensus       155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~  210 (258)
T d1b0ua_         155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG  210 (258)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH
T ss_pred             HHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHH
Confidence            999999999975                     66667666554 788999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.90  E-value=7.3e-26  Score=181.14  Aligned_cols=149  Identities=11%  Similarity=0.063  Sum_probs=95.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhc--------ccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYR--------VHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~--------~~~   96 (199)
                      -|+++||+++|++.  .+|+| |||++++|+++||+||||||||||+++|+|++.|..+.+. .++...        ...
T Consensus         6 ~Lev~~l~k~yg~~--~al~~-vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~-~~G~~i~~~~~~~~~r~   81 (240)
T d1ji0a_           6 VLEVQSLHVYYGAI--HAIKG-IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII-FNGQDITNKPAHVINRM   81 (240)
T ss_dssp             EEEEEEEEEEETTE--EEEEE-EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEECTTCCHHHHHHT
T ss_pred             EEEEeeEEEEECCE--EEEee-eeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-ecccccccccHHHHHHh
Confidence            47899999999765  79999 9999999999999999999999999999999987654433 222110        000


Q ss_pred             c--c-ccCCCCCCC--------------chHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch---
Q psy9640          97 D--I-IVPRGGENC--------------VAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET---  156 (199)
Q Consensus        97 ~--~-~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~---  156 (199)
                      .  . +..+.....              ...+...+.+...+..  ...+....+..+.+|||||+|||+||||+..   
T Consensus        82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~  159 (240)
T d1ji0a_          82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL--FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHH--CHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             cccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            0  0 111111000              0001111111111110  0012222234566899999999999999976   


Q ss_pred             ------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 ------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 ------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                        +.+.+.++..+ +.++|+++||-+
T Consensus       160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~  200 (240)
T d1ji0a_         160 LLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNAL  200 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHH
T ss_pred             EeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence                              66677776554 889999999743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=9.9e-25  Score=175.94  Aligned_cols=150  Identities=17%  Similarity=0.081  Sum_probs=96.6

Q ss_pred             cCcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc--------c
Q psy9640          24 RGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV--------H   95 (199)
Q Consensus        24 ~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~--------~   95 (199)
                      .-|+++||+++|++.  ++|+| |||++++|+++||+||||||||||+++|+|++.|..+.+.. ++....        .
T Consensus         3 ~iL~v~nlsk~yg~~--~aL~~-vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~-~g~~i~~~~~~~~~~   78 (254)
T d1g6ha_           3 EILRTENIVKYFGEF--KALDG-VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF-ENKDITNKEPAELYH   78 (254)
T ss_dssp             EEEEEEEEEEEETTE--EEEEE-ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE-TTEECTTCCHHHHHH
T ss_pred             ceEEEEEEEEEECCe--EEEcc-eEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEE-CCEeccchhHHHHHH
Confidence            348899999999876  79999 99999999999999999999999999999998876544332 221000        0


Q ss_pred             --ccc-ccCCCCC-C---------------------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCe
Q psy9640          96 --ADI-IVPRGGE-N---------------------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSK  144 (199)
Q Consensus        96 --~~~-~~~~~~~-~---------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq  144 (199)
                        ... ...+... +                           ....+...+.+.+.+.   ...+....+..+.+|||||
T Consensus        79 ~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LSgG~  155 (254)
T d1g6ha_          79 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE---FLKLSHLYDRKAGELSGGQ  155 (254)
T ss_dssp             HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHH---HTTCGGGTTSBGGGSCHHH
T ss_pred             hcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHH---hcCcchhccCchhhCCcHH
Confidence              000 0000000 0                           0000111111212221   1122222234577999999


Q ss_pred             eeeeeEEeccch---------------------hHHHHHhhccccceeEEEEEeCCCC
Q psy9640         145 ICGVSILRAGET---------------------MEQAVHDVCKDIRIGKILIQTNKAT  181 (199)
Q Consensus       145 ~QrvaiaRA~~~---------------------~~~~l~~~~p~~~~~~~~~~~~~~~  181 (199)
                      +|||+||||+..                     +.+.+.++. +.++++|+++||-+.
T Consensus       156 ~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g~til~vsHdl~~  212 (254)
T d1g6ha_         156 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLDI  212 (254)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCCST
T ss_pred             HHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHH
Confidence            999999999975                     556666653 458999999998664

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=8e-25  Score=174.81  Aligned_cols=148  Identities=11%  Similarity=0.057  Sum_probs=95.7

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchh--------cccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFY--------RVHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~--------~~~~   96 (199)
                      .|+++||+++|.+.  ++|++ +||++++|+++||+||||||||||+++|+|++.|..+.+ ..++..        +...
T Consensus         2 aI~v~nl~k~yg~~--~vl~~-vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i-~i~G~~i~~~~~~~~~~i   77 (238)
T d1vpla_           2 AVVVKDLRKRIGKK--EILKG-ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV-TVFGKNVVEEPHEVRKLI   77 (238)
T ss_dssp             CEEEEEEEEEETTE--EEEEE-EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTCHHHHHTTE
T ss_pred             CEEEEeEEEEECCE--EEEcc-ceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE-EECcEecccChHHHHhhE
Confidence            47899999999876  89999 999999999999999999999999999999998765443 332211        0111


Q ss_pred             c-cccCCCCCCC-c--------------hHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch----
Q psy9640          97 D-IIVPRGGENC-V--------------AIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET----  156 (199)
Q Consensus        97 ~-~~~~~~~~~~-~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~----  156 (199)
                      . ++........ .              ....+.+.+...+.   ...+....+....+|||||+||++||||++.    
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~i  154 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE---IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL  154 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred             eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHH---hCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCE
Confidence            1 1111111110 0              01111111211111   1122222344567899999999999999976    


Q ss_pred             -----------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                       +.+.+.++. +-+.++|+++||-.
T Consensus       155 llLDEPt~gLD~~~~~~i~~~i~~~~-~~g~tii~~tH~l~  194 (238)
T d1vpla_         155 AILDEPTSGLDVLNAREVRKILKQAS-QEGLTILVSSHNML  194 (238)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEEECCHH
T ss_pred             EEecCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeCCHH
Confidence                             444554443 34789999999755

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7e-25  Score=179.14  Aligned_cols=149  Identities=14%  Similarity=0.063  Sum_probs=87.6

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeee--------ecccchhcccc
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTL--------LSMDSFYRVHA   96 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~--------i~~d~~~~~~~   96 (199)
                      .+.++|+++.  +  .++|+| +||+|++|+++||+||||||||||+++|+|++.+..+.+        ++++...... 
T Consensus        38 ~i~~~~~~~~--g--~pvL~~-isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~-  111 (281)
T d1r0wa_          38 NVSFSHLCLV--G--NPVLKN-INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG-  111 (281)
T ss_dssp             --CHHHHHHT--T--CEEEEE-EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE-
T ss_pred             cEEEEEcCCC--C--CeEEeC-eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCc-
Confidence            4555555442  2  489999 999999999999999999999999999999998765332        2232211110 


Q ss_pred             ccccCCCCC-CCchHHHHHHHHHHHHhcCceeecCCceee----ecceecCCeeeeeeEEeccch---------------
Q psy9640          97 DIIVPRGGE-NCVAIDLIVQHIHSQLQAGVSVDMPQGYTY----EGKRCAVSKICGVSILRAGET---------------  156 (199)
Q Consensus        97 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g~~lSgGq~QrvaiaRA~~~---------------  156 (199)
                       ....+... ...........++..........++.++++    .+.+|||||+|||+||||++.               
T Consensus       112 -tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD  190 (281)
T d1r0wa_         112 -TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD  190 (281)
T ss_dssp             -EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred             -eeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCC
Confidence             00000000 011122222223111111223345554443    467899999999999999975               


Q ss_pred             --hHHHHHhh-cc--ccceeEEEEEeCCC
Q psy9640         157 --MEQAVHDV-CK--DIRIGKILIQTNKA  180 (199)
Q Consensus       157 --~~~~l~~~-~p--~~~~~~~~~~~~~~  180 (199)
                        ....+.+. .-  ....++|.|+|+.+
T Consensus       191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~~  219 (281)
T d1r0wa_         191 VFTEEQVFESCVCKLMANKTRILVTSKME  219 (281)
T ss_dssp             HHHHHHHHHHCCCCCTTTSEEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEEEechHH
Confidence              22333322 11  22567899999754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=9e-24  Score=164.65  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=52.0

Q ss_pred             CcccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeee
Q psy9640          25 GRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLL   86 (199)
Q Consensus        25 ~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i   86 (199)
                      .|+++||++.|+   +++|++ +||++++|++++|+||||||||||+++|+|.+.|..+.+.
T Consensus         2 ~lev~~ls~~y~---~~vl~~-is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~   59 (200)
T d1sgwa_           2 KLEIRDLSVGYD---KPVLER-ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII   59 (200)
T ss_dssp             EEEEEEEEEESS---SEEEEE-EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEEEEEEeC---CeEEec-eEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEE
Confidence            478999999995   379999 9999999999999999999999999999999988765543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=1.1e-22  Score=161.96  Aligned_cols=144  Identities=9%  Similarity=0.024  Sum_probs=91.9

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhcc-------cccc
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRV-------HADI   98 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~-------~~~~   98 (199)
                      +++ ++.++|.+.  . + | +||++. +++++|+||||||||||+++|+|++.|..+.+ ..++....       ...+
T Consensus         3 l~v-~~~k~~g~~--~-~-~-vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I-~~~G~~i~~~~~~~r~ig~   74 (240)
T d2onka1           3 LKV-RAEKRLGNF--R-L-N-VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV-RLNGADITPLPPERRGIGF   74 (240)
T ss_dssp             EEE-EEEEEETTE--E-E-E-EEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCTTTSCCBC
T ss_pred             EEE-EEEEEECCE--E-E-E-EEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEE-EECCEECCcCCHHHcCcee
Confidence            344 456777654  2 2 7 899995 58999999999999999999999998765433 33221110       0111


Q ss_pred             ccCCCC--CC------------CchHHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch--------
Q psy9640          99 IVPRGG--EN------------CVAIDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET--------  156 (199)
Q Consensus        99 ~~~~~~--~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~--------  156 (199)
                      .+....  .+            ........+.+.+.+.   .+.+....+..+.+|||||+|||+||||+..        
T Consensus        75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~---~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD  151 (240)
T d2onka1          75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAE---KLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD  151 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHH---TTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred             eccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHH---hcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEec
Confidence            110000  00            0111122222322222   2344455566788999999999999999976        


Q ss_pred             -------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                   +.+.++++..+.++++|.++||.+
T Consensus       152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~  188 (240)
T d2onka1         152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI  188 (240)
T ss_dssp             STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence                         777777887777899999999854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.4e-22  Score=157.69  Aligned_cols=138  Identities=7%  Similarity=0.076  Sum_probs=85.8

Q ss_pred             cccccceeeccccccccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCeeeeecccchhccc----------
Q psy9640          26 RDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLNVPWVTLLSMDSFYRVH----------   95 (199)
Q Consensus        26 i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~~d~~~~~~----------   95 (199)
                      ++++||+++|      +|++ |||+|++|+++||+||||||||||+++|+|+. +..+ .+..++.....          
T Consensus         4 l~~~dv~~~~------~l~~-isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G-~I~~~g~~i~~~~~~~~~~~~   74 (231)
T d1l7vc_           4 MQLQDVAEST------RLGP-LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKG-SIQFAGQPLEAWSATKLALHR   74 (231)
T ss_dssp             EEEEEECCTT------TSCS-EEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSS-EEEESSSBGGGSCHHHHHHHE
T ss_pred             EEEECcccCc------eecC-EEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCce-EEEECCEECCcCCHHHHHhhc
Confidence            6788887664      5899 99999999999999999999999999999964 4443 33333221000          


Q ss_pred             cccccCCCC-CC------------Cch-HHHHHHHHHHHHhcCceeecCCceeeecceecCCeeeeeeEEeccch-----
Q psy9640          96 ADIIVPRGG-EN------------CVA-IDLIVQHIHSQLQAGVSVDMPQGYTYEGKRCAVSKICGVSILRAGET-----  156 (199)
Q Consensus        96 ~~~~~~~~~-~~------------~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~-----  156 (199)
                      ..+...... ..            ... .+.+.+.+ ..      +.+....+..+.+|||||+|||+||||++.     
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~------~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~  147 (231)
T d1l7vc_          75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA-GA------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA  147 (231)
T ss_dssp             EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHH-HH------TTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred             eeeeccccCCccccHHHHhhhccchhhHHHHHHHHH-Hh------cCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCccc
Confidence            001111110 00            001 11122222 21      223333344677899999999999999851     


Q ss_pred             -----------------------hHHHHHhhccccceeEEEEEeCCC
Q psy9640         157 -----------------------MEQAVHDVCKDIRIGKILIQTNKA  180 (199)
Q Consensus       157 -----------------------~~~~l~~~~p~~~~~~~~~~~~~~  180 (199)
                                             +.+.+.++.. .+.+.|+++||-+
T Consensus       148 ~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~  193 (231)
T d1l7vc_         148 NPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLN  193 (231)
T ss_dssp             CTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHH
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence                                   4455555543 4888999999743

>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Bacillus caldolyticus [TaxId: 1394]

Probab=99.19  E-value=6.7e-12  Score=97.01  Aligned_cols=73  Identities=27%  Similarity=0.454  Sum_probs=62.1

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.+..+...+.--|+|.||++.|.+++++++|++++|+|+++||++|.+|++||.|+|++++++
T Consensus        52 ~~VeTPlg-~~~~~~~~~~~i~~V~ILRAGl~m~~g~~~~~p~a~vg~Ig~~Rd~~t~~p~~~y~klP~~i~~~  124 (208)
T d1i5ea_          52 VEIETPVS-KARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEER  124 (208)
T ss_dssp             EEEECSSC-EEEEEEECCCCEEEEEBTTGGGGGHHHHHHHCTTSEECEEEEECCTTCSSCEEEEEECCTTTTTS
T ss_pred             EEEecCCc-ceEeeeecCCceeEeecccchhhHHHHHHHhCCCceeeeEEEeeccCCCCcEEEeeecCcchhcC
Confidence            45566666 34444455566667899999999999999999999999999999999999999999999998875

>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.15  E-value=2.7e-11  Score=94.56  Aligned_cols=74  Identities=50%  Similarity=0.864  Sum_probs=63.2

Q ss_pred             CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ...++.|.+..+.+..+. .+---|+|.||++.|.+++++++|++++|+|+++||+++.+|++||.|+|++++++
T Consensus        65 ~~~V~TPlg~~~~~~~~~-~~v~~V~ILRAGl~m~~g~~~~~p~a~~g~i~~~Rde~t~~p~~~y~klP~~i~~~  138 (224)
T d1bd3a_          65 KKEVTTPLDVSYHGVSFY-SKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRER  138 (224)
T ss_dssp             CEEEECTTSCEEEECCBC-CCEEEEEEETGGGGGHHHHHHHSTTCCEEEEEEEECTTTCCEEEEEEECCTTGGGS
T ss_pred             EEEEECCCcccccceecC-CceEEEeeecccchhhhhHHhhCCCccceeeeeccccCCCCceeeHhhCCCccccc
Confidence            456777776444555554 46667999999999999999999999999999999999999999999999988764

>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=2.3e-11  Score=94.14  Aligned_cols=74  Identities=30%  Similarity=0.369  Sum_probs=64.2

Q ss_pred             CceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         124 GVSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ...++.|.+ .+.+..+...+..-|+|.||++.|.+++++++|++.+|+|+++||+++.+|+.||.|+|++++++
T Consensus        53 ~~~v~TP~g-~~~~~~~~~~~i~~V~ILRAGl~m~~g~~~~~p~a~vg~i~~~r~~~t~~p~~yy~~lP~~i~~~  126 (210)
T d1o5oa_          53 EVEVETPIT-KTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDK  126 (210)
T ss_dssp             EEEEECSSC-EEEEEECCSTTEEEEEEETTHHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCCTTC
T ss_pred             cEEecCCCc-ceEEEEecCCceEEEEEeccchhHHHHHHHhCCCceeeEEEEeccCCCCCceeehhhCCccccCc
Confidence            345677776 45555666667788999999999999999999999999999999999999999999999998764

>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=2.4e-11  Score=93.85  Aligned_cols=73  Identities=29%  Similarity=0.454  Sum_probs=54.4

Q ss_pred             ceeecCCceeeecceecCCeeeeeeEEeccchhHHHHHhhccccceeEEEEEeCCCCCCchhhhhcCCCCccCC
Q psy9640         125 VSVDMPQGYTYEGKRCAVSKICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNKATDEPELYYLRLPKDIKDY  198 (199)
Q Consensus       125 ~~~~~~~~~~~~g~~lSgGq~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  198 (199)
                      ..++.|.+ .+.+..+...+.--|+|.||++.|.+++++++|++.+|+|+++||+++.+|++||+|+|.+++++
T Consensus        52 ~~V~TP~~-~~~~~~~~~~~i~~V~ILRAGl~m~~g~~~~~p~a~ig~i~~~r~~~t~~p~~~y~klP~~i~~~  124 (208)
T d1v9sa1          52 TTVETPIA-PARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAER  124 (208)
T ss_dssp             EEEECSSS-EEEEEEECSSCCEEEEETTTHHHHHHHHHTTCTTCEEEEEEEC---------CEEEECCSCGGGS
T ss_pred             EEEECCCC-ceeEEEecCCceEEeeeeccchhHHHHHHHHCCCcceeeEEEEecCCCCCcEEEEEecCcccccc
Confidence            35667776 34455666667778999999999999999999999999999999999999999999999998765

>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.97  E-value=3.1e-10  Score=87.96  Aligned_cols=74  Identities=22%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             CceeecCCceeeecceecCC-eeeeeeEEeccchhHHHHHhhccccceeEEEEEeCC-------CCCCchhhhhcCCCCc
Q psy9640         124 GVSVDMPQGYTYEGKRCAVS-KICGVSILRAGETMEQAVHDVCKDIRIGKILIQTNK-------ATDEPELYYLRLPKDI  195 (199)
Q Consensus       124 ~~~~~~~~~~~~~g~~lSgG-q~QrvaiaRA~~~~~~~l~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~  195 (199)
                      ...++.|.+..+.|.+++.+ +---|+|.||++.|.+++++++|++++|+|+++||+       ++++|+.||+|+|++.
T Consensus        50 ~~~v~TP~g~~~~g~~~~~~~~i~~V~ILRAGl~m~~g~~~~~p~a~vg~ig~~r~~~~~~~~~~~~~~~~yy~klP~~~  129 (215)
T d1xtta1          50 IVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIR  129 (215)
T ss_dssp             EEEEECTTSCEEEEEECGGGGSEEEEEEETTTHHHHHHHHHHCTTCEEEEEEEEECCCCCSSCCSCCCEEEEEEECCCCC
T ss_pred             eEEEEcCCCccccceEecCCCceEEeechhhcccchHHHHhhCCCCceeeeeeEeccccccCCCcccceeeeeecCCCcc
Confidence            34667788777788888764 457899999999999999999999999999999987       6789999999999876


Q ss_pred             cC
Q psy9640         196 KD  197 (199)
Q Consensus       196 ~~  197 (199)
                      .+
T Consensus       130 ~~  131 (215)
T d1xtta1         130 AK  131 (215)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.7e-08  Score=81.89  Aligned_cols=81  Identities=25%  Similarity=0.344  Sum_probs=57.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC----CCeeeeecccchhccccccc-----cCCCCCCCchHHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN----VPWVTLLSMDSFYRVHADII-----VPRGGENCVAIDLIVQHIHSQL  121 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~----~~~~~~i~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~  121 (199)
                      -+.+.+|||.|+|||||||+++.|...+.    ...+.++++|+|+.......     ..++.....+.+.+.+.+ ..+
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L-~~l  155 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV-SDL  155 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHH-HHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCCccCCchHhhhHHHHHHHH-HHH
Confidence            35678999999999999999999998875    35688899999987543321     122233345678888888 444


Q ss_pred             hc-CceeecCCc
Q psy9640         122 QA-GVSVDMPQG  132 (199)
Q Consensus       122 ~~-~~~~~~~~~  132 (199)
                      .. ...+..|.+
T Consensus       156 k~g~~~v~~P~y  167 (308)
T d1sq5a_         156 KSGVPNVTAPVY  167 (308)
T ss_dssp             TTTCSCEEECCE
T ss_pred             HcCCCcceeecc
Confidence            43 345777775

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.58  E-value=1.4e-08  Score=74.75  Aligned_cols=31  Identities=35%  Similarity=0.421  Sum_probs=27.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCeeeee
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPWVTLL   86 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i   86 (199)
                      .++|+||||||||||++.|++.+.+..+++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~   32 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW   32 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEE
Confidence            5899999999999999999999987655543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=1.4e-07  Score=75.73  Aligned_cols=82  Identities=23%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc-----CCCeeeeecccchhccccc------------cccCCCCCCCchHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL-----NVPWVTLLSMDSFYRVHAD------------IIVPRGGENCVAIDL  112 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l-----~~~~~~~i~~d~~~~~~~~------------~~~~~~~~~~~~~~~  112 (199)
                      .-+.+.+|||.|++|||||||++.|...+     ....+.++++|+||....+            +...|+.....+.+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~l  102 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL  102 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHHH
Confidence            44567899999999999999998886654     2345778899999875332            112345566778888


Q ss_pred             HHHHHHHHHhcC------ceeecCCc
Q psy9640         113 IVQHIHSQLQAG------VSVDMPQG  132 (199)
Q Consensus       113 ~~~~l~~~~~~~------~~~~~~~~  132 (199)
                      +.+.+ ..+...      ..+..|.+
T Consensus       103 l~~~l-~~l~~~~~~~~~~~v~iP~f  127 (286)
T d1odfa_         103 LQEVL-NTIFNNNEHPDQDTVVLPKY  127 (286)
T ss_dssp             HHHHH-HHHTC------CCEEEECCE
T ss_pred             HHHHH-HHHHhhccccccccccCCch
Confidence            88777 444322      34677765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.4e-08  Score=74.12  Aligned_cols=42  Identities=57%  Similarity=0.958  Sum_probs=34.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC-------eeeeecccchhcc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP-------WVTLLSMDSFYRV   94 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~-------~~~~i~~d~~~~~   94 (199)
                      ++.+|||.|++||||||+++.|+..++..       .+.++++|+||+.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~   49 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV   49 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccc
Confidence            36799999999999999999999887542       4567889998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.41  E-value=5.4e-08  Score=78.13  Aligned_cols=80  Identities=11%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhccccc--------cc-cCCC---CCCC--chHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYRVHAD--------II-VPRG---GENC--VAIDLIVQH  116 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~~~~~--------~~-~~~~---~~~~--~~~~~~~~~  116 (199)
                      +.-+|||.|+|||||||+++.|...++..  ...++++|+||+....        .. ..+.   ..++  .+++.+.++
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P~A~d~dlL~~~   82 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV   82 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCcccccHHHHHHH
Confidence            44599999999999999999998877533  3457899999863211        00 1111   1122  356778777


Q ss_pred             HHHHHhcCceeecCCce
Q psy9640         117 IHSQLQAGVSVDMPQGY  133 (199)
Q Consensus       117 l~~~~~~~~~~~~~~~~  133 (199)
                      + ..+.++..+..|.+.
T Consensus        83 l-~~L~~g~~i~~p~Yd   98 (288)
T d1a7ja_          83 F-REYGETGQGRTRTYV   98 (288)
T ss_dssp             H-HHHHHHSCCEECCCC
T ss_pred             H-HHHHCCCcccceeee
Confidence            7 566666667777763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.27  E-value=2.7e-07  Score=67.10  Aligned_cols=29  Identities=31%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      -++|.+|.|+|+|||||||+++.|+..+.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999999998774

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=3.5e-07  Score=67.78  Aligned_cols=46  Identities=35%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC--eeeeecccchhc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLNVP--WVTLLSMDSFYR   93 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~--~~~~i~~d~~~~   93 (199)
                      ++.-...-+|||.|++|||||||++.|...++..  ....+..++++.
T Consensus        16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~~   63 (198)
T d1rz3a_          16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV   63 (198)
T ss_dssp             TSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred             hccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccccc
Confidence            4445566799999999999999999998876533  233344455443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.22  E-value=3.9e-07  Score=66.30  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=26.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .|.+|.|.|++||||||+++.|+..++.+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~   32 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPK   32 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            589999999999999999999988776554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=6.7e-07  Score=64.88  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .++.++.|+|++||||||+++.|+..++...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~   34 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAF   34 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            5788999999999999999999999886543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=4.4e-07  Score=65.66  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +++|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999998763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.13  E-value=1.1e-06  Score=63.62  Aligned_cols=30  Identities=30%  Similarity=0.556  Sum_probs=25.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ...+|.|.|+|||||||+++.|+..++...
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~   31 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPW   31 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            356899999999999999999999987543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=9.1e-07  Score=65.58  Aligned_cols=26  Identities=35%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |.++.|+|||||||||+++.|...+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999987764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=9.9e-07  Score=64.17  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=24.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..|+|+|++|||||||++.|+..++.+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~~~~   35 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFNTTS   35 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            5799999999999999999999887543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.07  E-value=1.2e-06  Score=63.48  Aligned_cols=29  Identities=31%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ++|..|.|.|++||||||+++.|+..+..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            57889999999999999999999988753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.3e-06  Score=62.20  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=23.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .|.|+|++||||||+++.|+..++.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~   30 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEF   30 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            477889999999999999999887654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.03  E-value=1.6e-06  Score=64.59  Aligned_cols=30  Identities=30%  Similarity=0.462  Sum_probs=26.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++.+|.|+||+||||||+++.|+..++..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~   33 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            577899999999999999999999988643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=8.7e-07  Score=65.55  Aligned_cols=27  Identities=33%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +|.+|.|+|++||||||+++.|+..++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999998774

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.98  E-value=2.3e-06  Score=61.59  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .++.|+|++||||||+++.|+..++.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~   28 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDN   28 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            47899999999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.97  E-value=1.9e-06  Score=62.66  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=26.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeeccc
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV--PWVTLLSMD   89 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d   89 (199)
                      +++|+|.+|||||||++.|+..+..  ..++++..+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            7899999999999999999987743  345555443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.97  E-value=2e-06  Score=62.07  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.|+|++||||||+++.|+..++.+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~   32 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKY   32 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcE
Confidence            467999999999999999998887553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=5.2e-06  Score=63.51  Aligned_cols=46  Identities=30%  Similarity=0.407  Sum_probs=37.5

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc--CCCeeeeecccchh
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL--NVPWVTLLSMDSFY   92 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l--~~~~~~~i~~d~~~   92 (199)
                      +++.-+++.+++++||+|+||||.+..|+..+  ....++++..|.++
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            46667788999999999999999999998876  23467778888764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.94  E-value=2.7e-06  Score=60.47  Aligned_cols=24  Identities=33%  Similarity=0.309  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+|.|+|++||||||+++.|+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            478899999999999999886644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=7.8e-06  Score=62.41  Aligned_cols=47  Identities=30%  Similarity=0.341  Sum_probs=37.1

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeecccchhc
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFYR   93 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d~~~~   93 (199)
                      ++++-+++.+++++||+|+||||.+..|+..+.  ...++++..|.++.
T Consensus         2 l~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   50 (211)
T d2qy9a2           2 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA   50 (211)
T ss_dssp             CCCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            345556788999999999999999999997763  34678888887643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.89  E-value=3.3e-06  Score=61.45  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+|+|.|++||||||+++.|+..+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            589999999999999999999887543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=5.3e-06  Score=61.80  Aligned_cols=31  Identities=26%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+-.++.|+||+||||||+++.|+..++..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~   35 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFV   35 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            3466789999999999999999999988654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.86  E-value=4.8e-06  Score=61.73  Aligned_cols=30  Identities=23%  Similarity=0.225  Sum_probs=26.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++|..+.|+||.||||||+++.|+..++..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~   30 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVC   30 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            468888999999999999999999888644

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=3e-05  Score=60.66  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=27.1

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +.++.+.-+.+.||+|||||++++.|+..++.+.+
T Consensus        40 ~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~   74 (256)
T d1lv7a_          40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF   74 (256)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEE
Confidence            34555566889999999999999999998876543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.82  E-value=5.4e-06  Score=62.68  Aligned_cols=28  Identities=36%  Similarity=0.470  Sum_probs=24.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+|+|.||+||||||+++.|+..++.+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~   30 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFT   30 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            3578999999999999999999988754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=6e-06  Score=62.66  Aligned_cols=27  Identities=11%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +|.++.|+||||||||||.+.|+....
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            488999999999999999999987653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.78  E-value=5.8e-06  Score=61.27  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++.++.|+||+||||||+++.|+..++..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~   30 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLA   30 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            45678999999999999999999888654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=7.6e-06  Score=60.68  Aligned_cols=28  Identities=32%  Similarity=0.612  Sum_probs=24.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.+|.|+||+||||||.++.|+..++..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~   28 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYT   28 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            3589999999999999999999988654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.9e-06  Score=59.79  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|.|+||+|||||||++.++..+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48899999999999999999877

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.78  E-value=4.1e-06  Score=62.30  Aligned_cols=30  Identities=33%  Similarity=0.373  Sum_probs=26.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .-+++.+|+|.|+.||||||+++.|...+.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346788999999999999999999987764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=7.2e-06  Score=61.65  Aligned_cols=26  Identities=38%  Similarity=0.469  Sum_probs=24.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +|+|.||+||||||+++.|+..++..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~   30 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWH   30 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            89999999999999999999988754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=7.4e-06  Score=60.72  Aligned_cols=28  Identities=39%  Similarity=0.592  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +.+.++||+|++||||||+++.|.. ++.
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~-~g~   28 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRS-WGY   28 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH-TTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCC
Confidence            3578999999999999999988853 443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.76  E-value=1.4e-05  Score=60.87  Aligned_cols=40  Identities=25%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccchh
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSFY   92 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~~   92 (199)
                      ++.+++++||+|+||||.+-.|+..+..  ..++++..|.++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence            5789999999999999999999887632  457777777664

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.76  E-value=7.8e-06  Score=59.31  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=23.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          57 IGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      +.|+|++||||||+.+.|+..++.+.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~   29 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFL   29 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            678899999999999999999876543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.72  E-value=9.5e-06  Score=59.16  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          57 IGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +.++|++||||||+++.|+..++.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~   30 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEF   30 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            56889999999999999999887654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.72  E-value=1.6e-05  Score=60.67  Aligned_cols=43  Identities=28%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeecccchh
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFY   92 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d~~~   92 (199)
                      .-+.+.+++++||+|+||||++-.|+..+.  ...++++..|.++
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            446789999999999999999999988763  2467778777664

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.71  E-value=7.3e-06  Score=61.04  Aligned_cols=31  Identities=29%  Similarity=0.456  Sum_probs=27.3

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ++++.+|.|+||+||||||+++.|+..++..
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~   35 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYT   35 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            4577899999999999999999999988654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=1.1e-05  Score=60.03  Aligned_cols=38  Identities=26%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCC--Ceeeeecccch
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNV--PWVTLLSMDSF   91 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~--~~~~~i~~d~~   91 (199)
                      +-+|.++|.+||||||+++.|+..+..  ....++..|.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~   41 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY   41 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccce
Confidence            458999999999999999999976642  23444445544

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=1.2e-05  Score=58.26  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          57 IGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +.++|++||||||+.+.|+..++.+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~f   29 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGL   29 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            55779999999999999999987664

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=1.4e-05  Score=58.44  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=23.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .|.|+||+||||||+++.|+..++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~   28 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPH   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCce
Confidence            478999999999999999999887654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=1.1e-05  Score=59.33  Aligned_cols=32  Identities=22%  Similarity=0.193  Sum_probs=26.2

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.-+++.+|.++|++||||||+++.++...+
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~   39 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG   39 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGT
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            44556789999999999999999998865443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.1e-05  Score=59.81  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |.|+||||||||||++.|+..+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999987764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.67  E-value=1.3e-05  Score=58.47  Aligned_cols=27  Identities=30%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++.|.|++||||||+++.|+..+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999887543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.66  E-value=2.8e-05  Score=59.09  Aligned_cols=42  Identities=24%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeecccchh
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMDSFY   92 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d~~~   92 (199)
                      .+++.++.++||+|+||||++..|+..+.  ...++++..|.++
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            34567899999999999999999988763  2356777777664

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.3e-05  Score=59.73  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |.|+||||||||||++.|+..++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999987764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.64  E-value=2.5e-05  Score=60.24  Aligned_cols=32  Identities=25%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ..+.+..+.+.||+|||||||++.|++.++..
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~   59 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGN   59 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            45566779999999999999999999988654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.62  E-value=2.1e-05  Score=57.78  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=24.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .|.|+||.||||||+++.|+..++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~   28 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPH   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCce
Confidence            578999999999999999999887654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.58  E-value=2.2e-05  Score=59.52  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=26.9

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.-++|.+|-|.|.|||||||+++.|...+
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4455799999999999999999999998655

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.2e-05  Score=58.04  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+.|+||||||||||++.|+...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999988654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=3.4e-05  Score=56.50  Aligned_cols=27  Identities=33%  Similarity=0.475  Sum_probs=23.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.|+||+||||||+++.|+..++...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~   28 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQ   28 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCce
Confidence            578999999999999999999887553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.1e-05  Score=56.20  Aligned_cols=24  Identities=17%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      |..|+++|++++|||||++.|.+.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            678999999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=3.1e-05  Score=56.56  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=23.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.|+||+||||||.++.|+..++...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~   28 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQ   28 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            578999999999999999999886543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=1.6e-05  Score=61.11  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=23.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +|...+++|+||+|||||++.|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            58899999999999999999997644

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.49  E-value=4.1e-05  Score=54.44  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +--.++|+|.+|||||||++.+.+.-
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCC
Confidence            44569999999999999999998753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.49  E-value=3e-05  Score=58.89  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCC-Ceeeeecc
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNV-PWVTLLSM   88 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~-~~~~~i~~   88 (199)
                      +++|+|+.|||||||++.|...+.. ...+++..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~   35 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL   35 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEec
Confidence            7899999999999999999876532 23444443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=3.8e-05  Score=56.16  Aligned_cols=28  Identities=21%  Similarity=0.459  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++.+-.|||+|.+|+|||||++.|++.
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4556778999999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.46  E-value=4.5e-05  Score=56.67  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=25.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +...++|+||.||||||+++.|+..++..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~   33 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELK   33 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCE
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCe
Confidence            45678899999999999999999988644

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.2e-05  Score=57.86  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++|.+|+|.|+-||||||+++.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999988763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.42  E-value=4.2e-05  Score=54.01  Aligned_cols=23  Identities=35%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|.|+|++|||||||++.+.+.-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=3.2e-05  Score=57.26  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4e-05  Score=56.35  Aligned_cols=29  Identities=14%  Similarity=0.227  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -+.+|+++.|.||+|||||||+..++...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998887643

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=5.9e-05  Score=55.26  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+.|+||.||||||+++.|+..++..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~   29 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAA   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            57789999999999999999988654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=5.2e-05  Score=56.90  Aligned_cols=26  Identities=35%  Similarity=0.392  Sum_probs=24.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +|.+|+|-|+-||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.37  E-value=4.6e-05  Score=57.24  Aligned_cols=25  Identities=44%  Similarity=0.822  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+|||+|++||||||+++.|. .++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~   27 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGV   27 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCC
Confidence            589999999999999998774 3443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=6e-05  Score=53.07  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|++|+|||||++.|.+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998853

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=2.7e-05  Score=59.17  Aligned_cols=27  Identities=26%  Similarity=0.236  Sum_probs=24.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++.+|+|-|+.||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999988774

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=6.3e-05  Score=55.79  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+|+|++|||||||++.|.+.-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=5.5e-05  Score=55.16  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +|+|+|.+|+|||||++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=7.5e-05  Score=58.78  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.+|+|||||||||++.+|.-.+
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            88999999999999999986544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=7.8e-05  Score=56.46  Aligned_cols=28  Identities=29%  Similarity=0.240  Sum_probs=26.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      +|.+|+|-|+-||||||++++|+..+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            7999999999999999999999988864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=5.2e-05  Score=54.86  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+|+|++|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=5.7e-05  Score=54.70  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +|+|+|.+|+|||||++.|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.27  E-value=4.7e-05  Score=55.46  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -|+|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999863

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=9.2e-05  Score=55.68  Aligned_cols=22  Identities=36%  Similarity=0.770  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .+|||+|..||||||+++.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            5899999999999999988753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00011  Score=59.40  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeeccc
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMD   89 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d   89 (199)
                      .|+. +...-.+..+|||.|+.|||||||+..|+..+.  ...++++..|
T Consensus        43 ll~~-~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD   91 (327)
T d2p67a1          43 LLDA-IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   91 (327)
T ss_dssp             HHHH-HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHH-hhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCC
Confidence            4444 444556789999999999999999999987663  2345555444

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.23  E-value=8e-05  Score=53.68  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=22.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++.-.++|+|++|||||||++.|.+.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45567899999999999999998654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=3.3e-05  Score=56.28  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=25.1

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .++.+.+| +.+|+|+|||||||++..|.-.+.
T Consensus        18 ~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          18 RTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            45555444 889999999999999999976553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=2e-05  Score=60.79  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +|...+++|+||+|||||++.|.+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            57788899999999999999997644

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=3.4e-05  Score=56.55  Aligned_cols=20  Identities=25%  Similarity=0.503  Sum_probs=18.6

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy9640          57 IGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~   76 (199)
                      |||+|++++|||||++.|.+
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999865

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00011  Score=55.86  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=23.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+.+.||+|+||||+++.|+..++.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~   63 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNI   63 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence            467999999999999999999887653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00015  Score=55.41  Aligned_cols=31  Identities=23%  Similarity=0.113  Sum_probs=25.7

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ......+.|.||+|+||||++++|+..++..
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~~~   79 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELGYD   79 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            3444578999999999999999999987643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.00015  Score=57.87  Aligned_cols=28  Identities=32%  Similarity=0.485  Sum_probs=23.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.-+.++||+|||||+|++.|++.+..+
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~   76 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAP   76 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccc
Confidence            3455689999999999999999987654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.00017  Score=52.23  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      ...++|.++++.|+=||||||++|.++..++..
T Consensus        28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             ccCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            356799999999999999999999999988753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.13  E-value=0.00013  Score=52.60  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++...|+++|.+|||||||++.|.+.
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00014  Score=53.91  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +|+|.|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999999876

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=0.00024  Score=54.92  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=27.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCCeee
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVPWVT   84 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~   84 (199)
                      .+..-+.+.||+|||||++++.|++.++.+.+.
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~   70 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK   70 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcccccccc
Confidence            345668999999999999999999988765443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.08  E-value=0.00014  Score=55.05  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=21.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+.|.||+|+||||+++.++..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999998653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=5.8e-05  Score=55.06  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHH
Q psy9640          57 IGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~   77 (199)
                      |||+|.+++|||||++.|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.06  E-value=0.00014  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+++|++|||||||++.|.+.
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            46899999999999999998763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00019  Score=54.51  Aligned_cols=26  Identities=35%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -+.+.||+|+||||+++++++.++.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~~~   62 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELGVN   62 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            46799999999999999999988654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00028  Score=54.60  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=26.0

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +....-+.+.||+|||||++++.|++.++.+.
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~   70 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPF   70 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCE
Confidence            33444589999999999999999999876554

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00024  Score=55.51  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .+..+.-+.+.||+|||||+|++.+++.++.+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~   69 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANF   69 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhCCcE
Confidence            455566688999999999999999999887553

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00015  Score=59.12  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      +..+-+.+|+|+|||||||++..|.
T Consensus        22 f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          22 FGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3445588999999999999999984

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00023  Score=53.90  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             cccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          42 AFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        42 ~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .|+..+.=-+.+|.++.|.|++||||||++..++.
T Consensus        25 ~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          25 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34442233699999999999999999999988875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=9.1e-05  Score=53.54  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=22.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -...-.|+|+|.+++|||||++.|.+.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999998653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.98  E-value=0.0004  Score=55.92  Aligned_cols=44  Identities=25%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             ccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc--CCCeeeeecccc
Q psy9640          47 IAPSMVEPFVIGICGGSASGKTTVATKIIESL--NVPWVTLLSMDS   90 (199)
Q Consensus        47 vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l--~~~~~~~i~~d~   90 (199)
                      +...-.+..++||.|+.|||||||+..|...+  ....++++..|.
T Consensus        44 ~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp   89 (323)
T d2qm8a1          44 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   89 (323)
T ss_dssp             HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             hhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence            33344677899999999999999999998754  344566665543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.98  E-value=0.00025  Score=54.08  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+..+.|.||+|+|||||++.++...+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            4578999999999999999998876643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=6.6e-05  Score=53.39  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+++|.+++|||||++.|.|.-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998853

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00057  Score=57.27  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCee
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWV   83 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~   83 (199)
                      .=+.++||+|||||-|++.|++.++.|.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VPFv   78 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAPFI   78 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            36899999999999999999999987743

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.97  E-value=0.00027  Score=53.76  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      .+|||.|+-||||||+++.|...++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g   26 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYS   26 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCC
Confidence            3799999999999999999977654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.96  E-value=0.00024  Score=50.85  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|++|+|||||++.+.+.-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999997643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00021  Score=53.12  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -|+|+|++|||||||++.|.+.-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00021  Score=51.22  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=21.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +...|+|+|.+|+|||||++.+.+.
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhC
Confidence            3457999999999999999998763

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00022  Score=53.85  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             EEEecCCCCcHHHHHHHHHHHc
Q psy9640          57 IGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.+.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00014  Score=54.67  Aligned_cols=27  Identities=11%  Similarity=0.208  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -+++|.++.|.|++||||||++-.++.
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999999977753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00026  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|++|+|||||++.+.+.
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            5899999999999999998763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.00027  Score=50.87  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|.+|+|||||++.+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            5899999999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00033  Score=50.47  Aligned_cols=25  Identities=28%  Similarity=0.612  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +-..|+++|.+|+|||||++.+.+.
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4467999999999999999988763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.91  E-value=0.00021  Score=55.53  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=30.1

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +.|++ +.--+.+|+++.|.|++|+||||++..++-
T Consensus        23 ~~lD~-~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGIND-KTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHH-HHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHH-HhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            56777 555799999999999999999999888874

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00035  Score=52.97  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.+|+|-|.-||||||+++.|...+...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            4689999999999999999999887643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0003  Score=50.43  Aligned_cols=23  Identities=17%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+++|++|+|||||++.+.+.
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00025  Score=53.77  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -+++|.++.|.|++||||||++-.++..
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999877653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00033  Score=50.09  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|+|||||++.+.+.
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988763

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.84  E-value=0.00033  Score=50.40  Aligned_cols=28  Identities=21%  Similarity=0.229  Sum_probs=23.1

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -.-++.-.++++|++|+|||||++.+.+
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3445567899999999999999998854

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00044  Score=53.63  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=25.5

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      +++..=+.+.||+|||||++++.++...+.+.
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~~~~   66 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETGAFF   66 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCCceeEEecCCCCCchHHHHHHHHHhCCeE
Confidence            33444488999999999999999999876543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.84  E-value=0.00021  Score=57.53  Aligned_cols=28  Identities=36%  Similarity=0.520  Sum_probs=24.1

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +.-+.|+|+.||||||+++.|++.+.+.
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccc
Confidence            3448999999999999999999888654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00035  Score=50.53  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|++|+|||||++.+.+.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998774

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.81  E-value=0.0003  Score=54.65  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..-.|+|+|.+|+|||||++.|+|.-
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            45579999999999999999998843

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.79  E-value=0.00048  Score=53.99  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             cccccccc-CCCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          41 PAFSTFIA-PSMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        41 ~~l~~~vs-l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.|+..+. =-++.|.++.|.||+||||||++-.++....
T Consensus        43 ~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          43 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            34554222 3678999999999999999999988876553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.78  E-value=0.00029  Score=53.34  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=26.1

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -+++|.++.|.|++||||||++..++...
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998887654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.77  E-value=0.00043  Score=52.64  Aligned_cols=28  Identities=21%  Similarity=0.162  Sum_probs=24.2

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      .+..+.|.||+|+||||+++.++..+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            4457889999999999999999988753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00041  Score=50.05  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|++|+|||||++.+.+.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00037  Score=52.49  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.+.||+|+||||+++.++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67899999999999999987654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.77  E-value=0.00033  Score=52.49  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=25.9

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -+.+|+++.|.|++|+||||++-.++.-.
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999998887543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00041  Score=49.89  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..++++|.+|+|||||++.+.+.
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.76  E-value=0.0003  Score=52.49  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=26.9

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHH
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      +.|++.+.=-+++|+++.|.|++|+|||||+..++
T Consensus        13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            44555112258999999999999999999986654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.75  E-value=0.00031  Score=51.20  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -|||+|...||||||++.|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999985

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.00046  Score=50.24  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|||||||++.+.+.
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00044  Score=49.40  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|.+|+|||||++.+.+.-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58999999999999999987643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00048  Score=49.27  Aligned_cols=23  Identities=13%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+++|.+|+|||||++.+.+.
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            47899999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00043  Score=49.69  Aligned_cols=22  Identities=14%  Similarity=0.567  Sum_probs=19.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..|+++|.+|+|||||++.+.+
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00047  Score=49.12  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|+|||||++.+.+.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998863

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00055  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|+|||||++.+...
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00055  Score=49.02  Aligned_cols=22  Identities=18%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -.|+++|.+|+|||||++.+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999876

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.66  E-value=0.00068  Score=56.01  Aligned_cols=30  Identities=27%  Similarity=0.262  Sum_probs=25.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+.=++.+.||.||||||++..++..+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~  185 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS  185 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence            456689999999999999999999987543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00054  Score=49.87  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=19.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .|+|+|++|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            589999999999999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00066  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..++|+|.+|+|||||++.+.+
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00065  Score=48.54  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+|+|.+|+|||||++.+.+.
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00055  Score=49.17  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+++|.+|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            58999999999999999987643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00054  Score=49.83  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .-.++++|.+|+|||||++.+...
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            347999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00062  Score=49.20  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+++|.+|+|||||++.+...-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            58899999999999999988643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00066  Score=48.90  Aligned_cols=22  Identities=14%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|+|||||++.+...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999888763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.58  E-value=0.00053  Score=49.72  Aligned_cols=28  Identities=25%  Similarity=0.176  Sum_probs=23.1

Q ss_pred             CCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          49 PSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        49 l~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +.-++--.++++|++|+|||||++.+.+
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHhc
Confidence            3455667899999999999999988753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.58  E-value=0.00065  Score=51.54  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +|||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00075  Score=48.40  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+++|.+|+|||||++.+...-
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            368999999999999999998543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00068  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|+++|.+|+|||||++.+...
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00068  Score=48.78  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+++|.+|+|||||++.+.+.
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00073  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|.+|+|||||++.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00072  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -.|+++|.+|+|||||++.+.+.
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999998863

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.0007  Score=49.81  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+|+|+.|+|||||++.+.+.
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            5899999999999999998864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.54  E-value=0.00091  Score=49.10  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .|.=|.|.|+||+||||++-.|+.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            677899999999999999966654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00075  Score=48.32  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|.+|+|||||++.+.+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999987643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00051  Score=53.66  Aligned_cols=29  Identities=28%  Similarity=0.420  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -++.|.++-|.||+||||||++-.++...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999997777654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.00051  Score=56.74  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +--|+|+|.+|+|||||++.|.|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999873

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.49  E-value=0.00088  Score=49.24  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKII   75 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~   75 (199)
                      .|.=+.|.|+||+||||++-.|+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            67889999999999999996654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00072  Score=50.73  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.+.||+|+||||++++++..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            66999999999999999998653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0013  Score=52.57  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=25.1

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      +...+.++||+|+|||.|++.|+..+..+
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~~~   79 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALGIE   79 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTCE
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhccCC
Confidence            44578899999999999999999988754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00064  Score=51.58  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.|.||+|+||||+++.++..+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            36799999999999999999876

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.001  Score=47.73  Aligned_cols=23  Identities=13%  Similarity=0.459  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..+.++|.+|+|||||++.+++.
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.44  E-value=0.00091  Score=52.39  Aligned_cols=38  Identities=32%  Similarity=0.345  Sum_probs=29.0

Q ss_pred             cccccccc-CCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIA-PSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vs-l~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+..+. =-++.|.++-|.||+||||||++-.++...
T Consensus        46 ~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             HHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            34444232 478999999999999999999987766544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00096  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ...++.|.|||.|||||++|.++-
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHH
Confidence            347899999999999999999853

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.42  E-value=0.0007  Score=48.70  Aligned_cols=26  Identities=31%  Similarity=0.273  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ++.-.+.++|++|+|||||++.+...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999988643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0011  Score=47.48  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.9

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|++|+|||||++.+...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0011  Score=52.47  Aligned_cols=31  Identities=23%  Similarity=0.160  Sum_probs=27.7

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      =+.+-+|+..+|.|++|+|||||+..|+...
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            5678899999999999999999999998744

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.39  E-value=0.00069  Score=51.75  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++.+.||+|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            46678999999999999999866

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.00054  Score=49.37  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=9.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .|+++|.+|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00091  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+++|.+|+|||||++.+.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCc
Confidence            468999999999999999987643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0014  Score=49.56  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=25.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCeeeeec
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPWVTLLS   87 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~~~~i~   87 (199)
                      -++.|.|.=|||||||++.|+.......+.++.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~~~~riaVI~   36 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE   36 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence            468899999999999999998754434455543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.35  E-value=0.0011  Score=47.44  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..|+++|.+|+|||||++.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.35  E-value=0.0012  Score=49.67  Aligned_cols=28  Identities=21%  Similarity=0.177  Sum_probs=22.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      ..|.++|.+|+|||||++.+....-.+.
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pT   34 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLT   34 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence            5789999999999999999864443333

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0011  Score=48.26  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|+|+|.+|+|||||++.+...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0012  Score=47.14  Aligned_cols=24  Identities=13%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..|+++|.+|+|||||++.+...-
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999987643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.001  Score=48.55  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCcHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKI   74 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L   74 (199)
                      -.+.++|.+|+|||||++.+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.26  E-value=0.0016  Score=52.97  Aligned_cols=33  Identities=24%  Similarity=0.130  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCCe
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVPW   82 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~~   82 (199)
                      .++++..+.+.||.|+||||+++.|++.++...
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~  182 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKA  182 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            567888999999999999999999999998653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.25  E-value=0.0015  Score=47.54  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .|.=|.|.|+||+||||++-.|+.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            678899999999999999855543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0014  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .++++|.+|+|||||++.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0007  Score=48.73  Aligned_cols=21  Identities=24%  Similarity=0.446  Sum_probs=18.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .++++|.+|+|||||++.+++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999988755

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0015  Score=47.38  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.++++|.+|+|||||++.+.+.-
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            578999999999999999887643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.21  E-value=0.0014  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .++.|.|||.|||||++|.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            5899999999999999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=47.76  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .|+++|.+|+|||||++.+...-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999998887643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.10  E-value=0.0021  Score=50.15  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +...+++|.|..|.|||||++.+...
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            35679999999999999999998765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0011  Score=51.99  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +=.+|+|+||.++|||||++.|.+..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            34699999999999999999998744

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0019  Score=49.58  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      +-+|.+..|.|++|+|||||+-.|+..
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            345999999999999999999887654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0026  Score=43.66  Aligned_cols=28  Identities=7%  Similarity=0.192  Sum_probs=24.8

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -++|..+-+.|-|||||||+++.|...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999996655

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.87  E-value=0.0035  Score=50.97  Aligned_cols=31  Identities=29%  Similarity=0.496  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .++++. +.++||+|+|||-|+|.|+..+..+
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~~~~   95 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHLDIP   95 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhcccc
Confidence            444444 6677999999999999999987554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.86  E-value=0.0029  Score=49.75  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..+..+||+|...||||||++.|.+.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            35567999999999999999999974

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.83  E-value=0.0017  Score=51.68  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      --+.|.|+.|+||||+++.+++.+.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35899999999999999999998743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.79  E-value=0.0028  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.++|.+|+|||||++.+....
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            68999999999999999987544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.73  E-value=0.002  Score=50.38  Aligned_cols=27  Identities=26%  Similarity=0.496  Sum_probs=21.9

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +..++ ++++|..+||||||++.|+|.-
T Consensus        24 ~~~P~-ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          24 LDLPQ-IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCCE-EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCCe-EEEEcCCCCCHHHHHHHHhCCC
Confidence            44443 6799999999999999999844

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0034  Score=45.37  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.7

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -.+.++|.+|+|||||++.+....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999997654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.62  E-value=0.0025  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .++++|..+||||||++.|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999854

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.55  E-value=0.0032  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      -|+|+|+.|||||||+..|+..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4899999999999999999643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0041  Score=47.14  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      ..+.|.||+|+||||++++++..+..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            45679999999999999999887643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.0051  Score=45.71  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      --|+|+|..+||||||+..|+..
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHH
Confidence            45899999999999999999754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.42  E-value=0.0036  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -|||+|.-.+|||||++.|.+..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            37999999999999999998744

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0045  Score=46.04  Aligned_cols=26  Identities=12%  Similarity=0.020  Sum_probs=22.5

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +.-+.+.||.|+||||+++.++..+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            33588999999999999999998774

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.38  E-value=0.004  Score=48.73  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      .-|+|+|..|||||||+..|+-
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3589999999999999999964

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0045  Score=48.41  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=27.1

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      -+.+-+|+.++|.|++|+|||||+..++...
T Consensus        62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4677899999999999999999988887653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.32  E-value=0.0055  Score=48.70  Aligned_cols=27  Identities=22%  Similarity=0.186  Sum_probs=23.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++.-.+.++||+|+|||.+++.|+..+
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHh
Confidence            344467899999999999999999876

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.28  E-value=0.0043  Score=49.77  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=20.0

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -.|.|-|+-||||||+++.|+..+..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            35899999999999999999766543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.17  E-value=0.004  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      .|||+|...+|||||++.|.+.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.13  E-value=0.0067  Score=47.09  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +..+||+|-..+|||||++.|.+.-
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC
Confidence            3479999999999999999998643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.01  E-value=0.0068  Score=45.34  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.3

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      +-|.||+|||||-|++.++..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999987653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.00  E-value=0.0058  Score=49.04  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=22.8

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      -.|.|-|+-||||||+++.|...+..
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            46899999999999999999987754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.0061  Score=49.75  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=18.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHH
Q psy9640          55 FVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ..+.|+|++|||||++++.|+-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3589999999999999976653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.89  E-value=0.008  Score=47.98  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          56 VIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++.+.||+|||||.+++.|++.++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            466689999999999999999764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.88  E-value=0.0067  Score=48.65  Aligned_cols=27  Identities=26%  Similarity=0.381  Sum_probs=23.3

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      -.|.|-|+-||||||+++.|...+...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            368999999999999999999877543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.75  E-value=0.01  Score=43.68  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             CCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          51 MVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+|.--|+|+|.-.+|||||+..|++..
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence            3455579999999999999999998644

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0091  Score=46.43  Aligned_cols=26  Identities=23%  Similarity=0.198  Sum_probs=21.9

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...-+.++|++|+|||++++-++..+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            33567799999999999999998765

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.57  E-value=0.012  Score=51.54  Aligned_cols=27  Identities=37%  Similarity=0.458  Sum_probs=24.3

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.+.|.|.|+||||||+-.|.|+..+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999998765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.011  Score=43.75  Aligned_cols=27  Identities=15%  Similarity=0.184  Sum_probs=22.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +...-+.++|++|.|||++++-|+..+
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            344567899999999999999998765

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.33  E-value=0.015  Score=51.25  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=24.4

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.+-|.|.|+||||||+-.|.++..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999998765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.19  E-value=0.016  Score=50.91  Aligned_cols=27  Identities=37%  Similarity=0.368  Sum_probs=24.5

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +..+-|.|.|+||||||+-.|.++..+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999998766

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.17  E-value=0.018  Score=42.41  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=20.9

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      --+||+|.-.+|||||+..|.+.+
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHH
Confidence            458999999999999999998753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.01  E-value=0.013  Score=45.93  Aligned_cols=29  Identities=24%  Similarity=0.166  Sum_probs=25.6

Q ss_pred             cCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy9640          48 APSMVEPFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        48 sl~i~~g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -+.+-+|+.++|.|++|+|||||+..++.
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            56788999999999999999999876664

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.00  E-value=0.018  Score=51.25  Aligned_cols=27  Identities=33%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.+-|.|.|+||||||+-.|.++..+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999998766

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.90  E-value=0.0086  Score=40.37  Aligned_cols=21  Identities=14%  Similarity=0.021  Sum_probs=18.6

Q ss_pred             CCCCeEEEEecCCCCcHHHHH
Q psy9640          51 MVEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        51 i~~g~iv~IvG~SGsGKSTLl   71 (199)
                      +++|+.+.|..|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            578999999999999999655

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.85  E-value=0.012  Score=45.87  Aligned_cols=36  Identities=28%  Similarity=0.157  Sum_probs=28.6

Q ss_pred             ccccccccCCCCCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          41 PAFSTFIAPSMVEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        41 ~~l~~~vsl~i~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+++-  -+.+-+|+.++|.|++|+|||+|+..++...
T Consensus        56 ~~ID~--l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          56 IAIDA--MIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTTTT--TSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEEec--cccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            45444  5677899999999999999999997765443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.56  E-value=0.021  Score=50.74  Aligned_cols=27  Identities=37%  Similarity=0.320  Sum_probs=24.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.+-|.|.|+||||||.-.|.++..+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467999999999999999999998765

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.54  E-value=0.025  Score=49.80  Aligned_cols=27  Identities=26%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...+-|.|.|+||||||+-.+.++..+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999998765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.96  E-value=0.029  Score=38.07  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=17.7

Q ss_pred             CCeEEEEecCCCCcHHHHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVATKI   74 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L   74 (199)
                      ..+...|.+|.|||||+++-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            4567788999999999987444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=92.84  E-value=0.037  Score=41.44  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.1

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ++++|.-.+|||||+..|+...+
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcC
Confidence            69999999999999999976543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.82  E-value=0.039  Score=40.50  Aligned_cols=26  Identities=27%  Similarity=0.185  Sum_probs=23.3

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+.-+.+.||+|+||||++..++..+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.80  E-value=0.022  Score=44.15  Aligned_cols=15  Identities=47%  Similarity=0.594  Sum_probs=12.7

Q ss_pred             EEEecCCCCcHHHHH
Q psy9640          57 IGICGGSASGKTTVA   71 (199)
Q Consensus        57 v~IvG~SGsGKSTLl   71 (199)
                      +.|.|+.||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            668899999999765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.72  E-value=0.051  Score=41.87  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ...+--.+.+.||.++||||++..|+..++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            556778899999999999999999999884

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.69  E-value=0.036  Score=42.04  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      --++|+|..++|||||+..|+-..
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~   30 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKC   30 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHc
Confidence            358999999999999999987544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.61  E-value=0.023  Score=43.56  Aligned_cols=15  Identities=40%  Similarity=0.483  Sum_probs=13.0

Q ss_pred             EEEecCCCCcHHHHH
Q psy9640          57 IGICGGSASGKTTVA   71 (199)
Q Consensus        57 v~IvG~SGsGKSTLl   71 (199)
                      +.|.|+.||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            578899999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.038  Score=44.43  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             CeEEEEecCCCCcHHHHHHHHHH
Q psy9640          54 PFVIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        54 g~iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      +.+..|.|+.|+||||++..++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHH
Confidence            56999999999999998865543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.58  E-value=0.039  Score=42.43  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=23.6

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ..+-.++++|-..+|||||++.|.+.-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            456779999999999999999998744

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.035  Score=43.88  Aligned_cols=20  Identities=35%  Similarity=0.282  Sum_probs=18.2

Q ss_pred             CCCeEEEEecCCCCcHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl   71 (199)
                      ++|.+-.+-|.||+|||||.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46889999999999999987

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.25  E-value=0.047  Score=40.66  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=18.8

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      -|+++|.-++|||||+..|+.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            489999999999999988864

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.15  E-value=0.054  Score=37.57  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             CeEEEEecCCCCcHHH-HHHHH
Q psy9640          54 PFVIGICGGSASGKTT-VATKI   74 (199)
Q Consensus        54 g~iv~IvG~SGsGKST-Ll~~L   74 (199)
                      |.+-.|+||-.||||| |++.+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHH
Confidence            6788999999999999 55554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.10  E-value=0.056  Score=40.04  Aligned_cols=32  Identities=16%  Similarity=0.287  Sum_probs=27.7

Q ss_pred             CCCCCeEEEEecCCCCcHHHHHHHHHHHcCCC
Q psy9640          50 SMVEPFVIGICGGSASGKTTVATKIIESLNVP   81 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKSTLl~~L~~~l~~~   81 (199)
                      .+++--.+.|.||.++|||+++..|++.+...
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            45777899999999999999999999998643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.00  E-value=0.06  Score=39.48  Aligned_cols=25  Identities=36%  Similarity=0.521  Sum_probs=21.6

Q ss_pred             CeEEEEe-cCCCCcHHHHHHHHHHHc
Q psy9640          54 PFVIGIC-GGSASGKTTVATKIIESL   78 (199)
Q Consensus        54 g~iv~Iv-G~SGsGKSTLl~~L~~~l   78 (199)
                      |.+|++. +..|+||||++-.|+..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            5788888 779999999999998766

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.98  E-value=0.038  Score=43.76  Aligned_cols=20  Identities=40%  Similarity=0.325  Sum_probs=17.9

Q ss_pred             CCCeEEEEecCCCCcHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl   71 (199)
                      +.|.+-.+-|.||+|||||.
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            35788999999999999987

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.80  E-value=0.038  Score=44.96  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHHHc
Q psy9640          57 IGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +.|+|++|.|||+++.-|+..+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999998777644

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.65  E-value=0.048  Score=43.20  Aligned_cols=20  Identities=35%  Similarity=0.297  Sum_probs=18.1

Q ss_pred             CCCeEEEEecCCCCcHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl   71 (199)
                      +.|.+-.+-|.||+|||||.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46788899999999999998

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.44  E-value=0.047  Score=41.45  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             EEEecCCCCcHHHHHHHHHHHcC
Q psy9640          57 IGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      |+|+|.-++|||||+..|+-..+
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~~~g   49 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILFLTG   49 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHHHTT
T ss_pred             EEEEeeCCCCHHHHHHHHHHHcC
Confidence            89999999999999999865443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.39  E-value=0.073  Score=40.35  Aligned_cols=27  Identities=30%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ....-|.|.|+.|+||+++++.|-...
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            344458999999999999999986544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.35  E-value=0.041  Score=44.05  Aligned_cols=20  Identities=15%  Similarity=0.441  Sum_probs=18.7

Q ss_pred             EEEecCCCCcHHHHHHHHHH
Q psy9640          57 IGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~~   76 (199)
                      |||+|..++|||||+..|+.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999964

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.079  Score=36.37  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=20.5

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      +|.+..|+||-.|||||-|=..+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            58999999999999999664444433

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.75  E-value=0.088  Score=39.76  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHcC
Q psy9640          55 FVIGICGGSASGKTTVATKIIESLN   79 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l~   79 (199)
                      ..|+|.|.=|+||||++-.|+..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH
Confidence            3689999999999999999887763

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.23  E-value=0.046  Score=41.83  Aligned_cols=20  Identities=15%  Similarity=-0.001  Sum_probs=18.2

Q ss_pred             CCCCCeEEEEecCCCCcHHH
Q psy9640          50 SMVEPFVIGICGGSASGKTT   69 (199)
Q Consensus        50 ~i~~g~iv~IvG~SGsGKST   69 (199)
                      -+.+|+.+.+.+|+|||||+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTT
T ss_pred             HhhcCCcEEEEECCCCCHHH
Confidence            46799999999999999996

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=0.14  Score=36.76  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             eEEEEecCC-CCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGS-ASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~S-GsGKSTLl~~L~~~l   78 (199)
                      ..+-|.|-. |+||||+.-.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            356788885 999999999998877

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.98  E-value=0.062  Score=38.95  Aligned_cols=19  Identities=26%  Similarity=0.176  Sum_probs=15.6

Q ss_pred             CCeEEEEecCCCCcHHHHH
Q psy9640          53 EPFVIGICGGSASGKTTVA   71 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl   71 (199)
                      .|.-+.++.|+|||||+.+
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            4556789999999999875

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.22  Score=37.46  Aligned_cols=26  Identities=38%  Similarity=0.399  Sum_probs=21.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ...++.+.|.=|.||||++-.|+..+
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45788888999999999988887655

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.83  E-value=0.2  Score=36.40  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=19.3

Q ss_pred             EEEEe-cCCCCcHHHHHHHHHHHc
Q psy9640          56 VIGIC-GGSASGKTTVATKIIESL   78 (199)
Q Consensus        56 iv~Iv-G~SGsGKSTLl~~L~~~l   78 (199)
                      +|+++ |.-|+||||++..|+..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            56666 888999999999988766

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.45  E-value=0.099  Score=38.81  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=18.1

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKI   74 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L   74 (199)
                      -.|+-+.+++|+|||||+..-..
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~   78 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAM   78 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHH
Confidence            36777889999999999876333

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.39  E-value=0.2  Score=34.60  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHH
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIES   77 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~   77 (199)
                      ..|.+-.|+||-.|||||-|=..+..
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHH
Confidence            47999999999999999966454443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=0.22  Score=37.58  Aligned_cols=37  Identities=27%  Similarity=0.260  Sum_probs=27.0

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcC--CCeeeeeccc
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLN--VPWVTLLSMD   89 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~--~~~~~~i~~d   89 (199)
                      .+.++.+.|.-|.||||++-.|+..+.  ...+.++..|
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            456788999999999999988887662  2344455555

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.24  Score=35.43  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=22.6

Q ss_pred             CCeEEEEecCCCCcHHHHHHHHHHHcCC
Q psy9640          53 EPFVIGICGGSASGKTTVATKIIESLNV   80 (199)
Q Consensus        53 ~g~iv~IvG~SGsGKSTLl~~L~~~l~~   80 (199)
                      |+.+|+|.|-+  ||||...+|...+..
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~   26 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQ   26 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHh
Confidence            56799999998  899999999988854

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.67  E-value=0.18  Score=36.38  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=18.4

Q ss_pred             EEEEecCCCCcHHHHHHHHHH
Q psy9640          56 VIGICGGSASGKTTVATKIIE   76 (199)
Q Consensus        56 iv~IvG~SGsGKSTLl~~L~~   76 (199)
                      ++.|+|++.||||..+..+++
T Consensus         1 iiLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCccHHHHHHHHHh
Confidence            367999999999999998864

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.53  E-value=0.22  Score=35.50  Aligned_cols=19  Identities=32%  Similarity=0.179  Sum_probs=14.0

Q ss_pred             EEEecCCCCcHHHHHHHHH
Q psy9640          57 IGICGGSASGKTTVATKII   75 (199)
Q Consensus        57 v~IvG~SGsGKSTLl~~L~   75 (199)
                      +.+++|+|||||..+-.++
T Consensus        26 ~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHH
Confidence            3477999999998654444

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.06  E-value=0.27  Score=37.33  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             eEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          55 FVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        55 ~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      .+|+|.|.-|.||||++-.|+..+
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            367889999999999988887655

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.58  E-value=0.046  Score=42.69  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=42.7

Q ss_pred             CeeeecCchhHHhhhhhcccccccCcccccceeeccccccccccccccCCCCCCeEE
Q psy9640           1 MKVFVDTDADVRLARRLKRDILARGRDLEGVIKQYVNMVKPAFSTFIAPSMVEPFVI   57 (199)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nvs~~y~~~~~~~l~~~vsl~i~~g~iv   57 (199)
                      ++||||.+.|.+..+++.||..+++...+.|..+|... .+...+||..+.+.-.++
T Consensus       149 lkIfVd~d~dlrliRRI~RD~~eRG~s~E~V~~~i~rr-mpdy~~yI~Pq~~~aDI~  204 (288)
T d1a7ja_         149 LKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDIN  204 (288)
T ss_dssp             EEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEE
T ss_pred             eEEEEECCCCeEEEeeehhhhhhcCCCHHHHHHHHHhc-chHHHHHHHHhhhceeEE
Confidence            58999999999999999999999999999998887542 344444455555444333

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.03  E-value=0.45  Score=34.11  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.2

Q ss_pred             CCCeEEEEecCCCCcHHHHHHHHHHHc
Q psy9640          52 VEPFVIGICGGSASGKTTVATKIIESL   78 (199)
Q Consensus        52 ~~g~iv~IvG~SGsGKSTLl~~L~~~l   78 (199)
                      ++.+++||.|-+  ||||+..+|...+
T Consensus        12 ~~~~~iAITGTn--GKTTt~~~l~~iL   36 (207)
T d1j6ua3          12 EKKEEFAVTGTD--GKTTTTAMVAHVL   36 (207)
T ss_dssp             HCCCEEEEECSS--SHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC--CHHHHHHHHHHHH
Confidence            356799999987  8999999887766