Psyllid ID: psy9643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MAVYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNSTD
Secondary Structure (PSIPRED)
ccEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccHHHHccccccEEcccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHccccEEEccccccccccccccccccEEEEEEEccEEEEEEEcccccccccccccccHHHHHHHHccccEEEEEccccccccccccccEEEEcccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHcccccccccHHHHHHHHccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcHHcHHHHHHHHHHHHHHHHHccccHHHccEEEccHHHHHccccccccHEEccccccEEEccccEEEEcccccccccHccEccccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEEEEccccHHHHHHcEEEEEEEHHHccccccccccccccEEEEEEEccEEEEEEEccccHHHcccHHHHcHHHHHHHcccccEEEEEEEEEEcccccccccEEEEEEEEEHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHccccEEEcccHHHHHHHHHcccEEEEEEEEEEEccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHcccc
Coil and Loop (DISEMBL)
MAVYYIDAADAEMAELVEMEMRELLTEMgwkgdevpfvkgsalcalegkepeigiiplypndkfeinklnvfvplinsrrgyaekqvysrdkphcnigtighvdhgktTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDsisirpkigiicgsglstiadsitdrhifpydtipyfpvstvpghkgqlVFGLINGipimcmqgrfhyyegyplwkcampirVMKLVGVTHLLATnaagglnpdyevgdiMIIKDHINlmgfagnnpllgvnedrfgprfppmnkaYNKQLRAATLDIARDLNMSSIVKEGVYsviggpnfetVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLitnkcvtdyddhaeaNHEEVIQAGKLRGPMIKSMVTRIVSYIGehqlnstd
Flexible Loop (DISEMBL)
mavyyidaadaeMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPhcnigtighvdhgkTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEViqagklrgpmIKSMVTRIVSYigehqlnstd
Low Complexity Region (SEG)
MAVYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNSTD
Disordered region (IsUnstruct)
**VYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG********
Disordered Region (DISOPRED)
*AVYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINS*************************************************YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV************
Disordered Region (DISEMBL)
MAVYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNSTD
Disordered Region (DISPRO)
MAVYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVYYIDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNSTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
P55859	289	Purine nucleoside phospho	yes	N/A	0.684	0.975	0.531	4e-88
P00491	289	Purine nucleoside phospho	yes	N/A	0.684	0.975	0.528	2e-85
P23492	289	Purine nucleoside phospho	yes	N/A	0.684	0.975	0.510	4e-81
P85973	289	Purine nucleoside phospho	yes	N/A	0.684	0.975	0.5	7e-79
P46354	271	Purine nucleoside phospho	yes	N/A	0.628	0.955	0.474	2e-65
P77834	274	Purine nucleoside phospho	N/A	N/A	0.597	0.897	0.505	7e-65
Q9UTG1	315	Putative purine nucleosid	yes	N/A	0.628	0.822	0.449	3e-63
Q05788	311	Purine nucleoside phospho	yes	N/A	0.618	0.819	0.435	2e-56
P45563	277	Purine nucleoside phospho	N/A	N/A	0.570	0.848	0.425	5e-49
P46862	268	Purine nucleoside phospho	yes	N/A	0.618	0.951	0.338	1e-33

>sp|P55859|PNPH_BOVIN Purine nucleoside phosphorylase OS=Bos taurus GN=PNP PE=1 SV=3

 Score =  325 bits (833), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 150/282 (53%), Positives = 194/282 (68%)

Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60

Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120

Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180

Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

Bos taurus (taxid: 9913)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1

>sp|P00491|PNPH_HUMAN Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2

 Score =  316 bits (809), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)

Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 1   MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST 60

Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120

Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180

Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 282

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|P23492|PNPH_MOUSE Purine nucleoside phosphorylase OS=Mus musculus GN=Pnp PE=1 SV=2

 Score =  301 bits (772), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 144/282 (51%), Positives = 190/282 (67%)

Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   +TYE  ++ AK+LL     RP++ +ICGSGL  +   + +  IF Y+ IP FP ST
Sbjct: 1   MENEFTYEDYETTAKWLLQHTEYRPQVAVICGSGLGGLTAHLKEAQIFDYNEIPNFPQST 60

Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           V GH G+LVFGL+NG   + MQGRFH YEGY L K   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VQGHAGRLVFGLLNGRCCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVETLVVTNAAGGL 120

Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF G NPL G N++RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFTAWKQ 180

Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GPNFETVAE  +L++ G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRKLQEGTYVMLAGPNFETVAESRLLKMLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK V DY++  +ANH EV+ AGK     ++  V+ ++  I
Sbjct: 241 ITNKVVMDYENLEKANHMEVLDAGKAAAQTLERFVSILMESI 282

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|P85973|PNPH_RAT Purine nucleoside phosphorylase OS=Rattus norvegicus GN=Pnp PE=1 SV=1

 Score =  294 bits (753), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 141/282 (50%), Positives = 186/282 (65%)

Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   +TYE  Q  A++L      RP++ +ICGSGL  +   +T    F Y+ IP FP ST
Sbjct: 1   MENEFTYEDYQRTAEWLRSHTKHRPQVAVICGSGLGGLTAKLTQPQAFDYNEIPNFPQST 60

Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           V GH G+LVFG +NG   + MQGRFH YEGY L K   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VQGHAGRLVFGFLNGRSCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVDTLVVTNAAGGL 120

Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF G NPL G N++RFG RFP M+ AY++ +R    +  + 
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFNAWKQ 180

Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y +  GP FETVAE  +LR+ G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYIMSAGPTFETVAESCLLRMLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK V DY++  +A+H+EV++AGK     ++  V+ ++  I
Sbjct: 241 ITNKVVMDYNNLEKASHQEVLEAGKAAAQKLEQFVSILMESI 282

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|P46354|PUNA_BACSU Purine nucleoside phosphorylase 1 OS=Bacillus subtilis (strain 168) GN=punA PE=1 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 177/274 (64%), Gaps = 15/274 (5%)

Query: 131 IQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLV 190
           I+  A F+  ++   PKIG+I GSGL  +AD I +     Y+ IP FPVSTV GH GQLV
Sbjct: 5   IERAAAFIKQNLPESPKIGLILGSGLGILADEIENPVKLKYEDIPEFPVSTVEGHAGQLV 64

Query: 191 FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDI 250
            G + G+ ++ MQGRFH+YEGY + K   P+RVMK +GV  L+ TNAAGG+N ++  GD+
Sbjct: 65  LGTLEGVSVIAMQGRFHFYEGYSMEKVTFPVRVMKALGVEALIVTNAAGGVNTEFRAGDL 124

Query: 251 MIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKE 310
           MII DHIN M   G NPL+G NE  FG RFP M+ AY+K L +    IA+DLN+   +++
Sbjct: 125 MIITDHINFM---GTNPLIGPNEADFGARFPDMSSAYDKDLSSLAEKIAKDLNIP--IQK 179

Query: 311 GVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY 370
           GVY+ + GP++ET AE+  LR  G DAVGMSTV EVI A+H GM V   S I+N      
Sbjct: 180 GVYTAVTGPSYETPAEVRFLRTMGSDAVGMSTVPEVIVANHAGMRVLGISCISNAAAGIL 239

Query: 371 DDHAEANHEEV------IQAGKLRGPMIKSMVTR 398
           D     +H+EV      ++AG L+  ++K++V +
Sbjct: 240 DQ--PLSHDEVMEVTEKVKAGFLK--LVKAIVAQ 269

Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|P77834|PUNA_GEOSE Purine nucleoside phosphorylase 1 OS=Geobacillus stearothermophilus GN=punA PE=3 SV=1

 Score =  248 bits (632), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 128/253 (50%), Positives = 161/253 (63%), Gaps = 7/253 (2%)

Query: 131 IQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLV 190
           I+  A+FL +     P+IG+I GSGL  +AD I      PY  IP FPVSTV GH GQLV
Sbjct: 6   IEQAAQFLKEKFPTSPQIGLILGSGLGVLADEIEQAIKIPYSDIPNFPVSTVEGHAGQLV 65

Query: 191 FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDI 250
           +G + G  ++ MQGRFHYYEGY   K   P+RVMK +GV  L+ TNAAGG+N  +E GD+
Sbjct: 66  YGQLEGATVVVMQGRFHYYEGYSFDKVTFPVRVMKALGVEQLIVTNAAGGVNESFEPGDL 125

Query: 251 MIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKE 310
           MII DHIN M   G NPL+G N+   G RFP M++AY+K+LR    D+A D+ +   V+E
Sbjct: 126 MIISDHINNM---GGNPLIGPNDSALGVRFPDMSEAYSKRLRQLAKDVANDIGLR--VRE 180

Query: 311 GVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY 370
           GVY    GP +ET AE+ M+R+ G DAVGMSTV EVI A H GM V   S I+N      
Sbjct: 181 GVYVANTGPAYETPAEIRMIRVMGGDAVGMSTVPEVIVARHAGMEVLGISCISNMAAGIL 240

Query: 371 DDHAEANHEEVIQ 383
           D      H+EVI+
Sbjct: 241 DQ--PLTHDEVIE 251

Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.

Geobacillus stearothermophilus (taxid: 1422)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|Q9UTG1|PNPH_SCHPO Putative purine nucleoside phosphorylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1805.16c PE=3 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/276 (44%), Positives = 170/276 (61%), Gaps = 17/276 (6%)

Query: 145 RPKIGIICGSGLSTIADSITDR-HIFPYDTIPYFPVSTVPGHKGQLVFGLI--NGIPIMC 201
           +PK+ IICGSGL T+A  ++   +  PY+ IP+F VS VPGH  +L F  +    +P M 
Sbjct: 40  KPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVPGHASKLYFAFLGEKRVPTMI 99

Query: 202 MQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMG 261
           + GR+H YEGYP+     P+R+MK++GV  ++ TNAAGGLN  ++VGD+MI+KDHIN  G
Sbjct: 100 LAGRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGLNQGFKVGDLMILKDHINFPG 159

Query: 262 FAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF 321
            AG NPL G N   FG RFPP++ AY+ +LR    D A+   +S  + EG Y+ + GP F
Sbjct: 160 LAGMNPLRGPNAHEFGVRFPPLSDAYDLELRKLVYDAAKAHKVSRTIHEGCYAFVSGPCF 219

Query: 322 ETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE------ 375
           ET AE  ML + G D VGMSTV EV+ A HCG+ V A SL+TN  V +    A+      
Sbjct: 220 ETRAESRMLALMGADCVGMSTVPEVVVARHCGIRVLAISLVTNNVVVEESPSAKDLVEVD 279

Query: 376 --------ANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
                   ANH EV++ G      +++MV  IV++I
Sbjct: 280 SNVMSKGAANHLEVLEVGIAAAADVRTMVETIVNFI 315

Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|Q05788|PNPH_YEAST Purine nucleoside phosphorylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PNP1 PE=1 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/271 (43%), Positives = 162/271 (59%), Gaps = 16/271 (5%)

Query: 146 PKIGIICGSGLSTIADSITDRH----IFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMC 201
           P+  IICGSGL  I+  ++  +      PY  IP F  STVPGH G L+FG +NG P++ 
Sbjct: 38  PRTLIICGSGLGGISTKLSRDNPPPVTVPYQDIPGFKKSTVPGHSGTLMFGSMNGSPVVL 97

Query: 202 MQGRFHYYEGYPLWKCAMPIRVMKLVG-VTHLLATNAAGGLNPDYEVGDIMIIKDHINLM 260
           M GR H YEG  L++   PIRV+  +G V +L+ TNAAGG+N  Y+  D+M I DH+N+ 
Sbjct: 98  MNGRLHGYEGNTLFETTFPIRVLNHMGHVRNLIVTNAAGGINAKYQACDLMCIYDHLNIP 157

Query: 261 GFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPN 320
           G AG +PL G N D  GPRF  ++ AY+ +LR       ++L +   + EG Y+ + GP 
Sbjct: 158 GLAGQHPLRGPNLDEDGPRFLALSDAYDLELRKLLFKKWKELKIQRPLHEGTYTFVSGPT 217

Query: 321 FETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHA------ 374
           FET AE  M+R+ G DAVGMSTV EVI A HCG  V A SLITN CV D    A      
Sbjct: 218 FETRAESKMIRMLGGDAVGMSTVPEVIVARHCGWRVLALSLITNTCVVDSPASALDESPV 277

Query: 375 -----EANHEEVIQAGKLRGPMIKSMVTRIV 400
                +A H EV++ GK+    +++++  ++
Sbjct: 278 PLEKGKATHAEVLENGKIASNDVQNLIAAVM 308

Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

>sp|P45563|XAPA_ECOLI Purine nucleoside phosphorylase 2 OS=Escherichia coli (strain K12) GN=xapA PE=1 SV=2

 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 144/242 (59%), Gaps = 7/242 (2%)

Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205
           P++  I GSGL  +AD I +     Y+ +P FPVSTV GH G+LV G + G+P++CM+GR
Sbjct: 26  PRVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGR 85

Query: 206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265
            H+YEG  +      IR  KL+G   L  TNAAG L P+   G ++ +KDHIN M     
Sbjct: 86  GHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTM---PG 142

Query: 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA 325
            P++G+N+DRFG RF  +  AY+ + RA    +A++      + EGV+    GPNFET A
Sbjct: 143 TPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFP--LTEGVFVSYPGPNFETAA 200

Query: 326 ELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAG 385
           E+ M++I G D VGMS V EVI+A HC + V A S ITN      D   + +H + + A 
Sbjct: 201 EIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSD--VKLSHAQTLAAA 258

Query: 386 KL 387
           +L
Sbjct: 259 EL 260

The nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the nucleoside molecule, with the formation of the corresponding free bases and pentose-1-phosphate. This protein can degrade all purine nucleosides except adenosine and deoxyadenosine.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: -

>sp|P46862|PUNA_MYCLE Purine nucleoside phosphorylase OS=Mycobacterium leprae (strain TN) GN=punA PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 140/275 (50%), Gaps = 20/275 (7%)

Query: 129 ELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSI-TDRHIFPYDTIPYFPVSTVPGHK 186
           EL +  A+ + +   I +  + ++ GSG S+   ++ + R +FP   +P F      GH 
Sbjct: 10  ELARRAAQVIGERTGILKHDVAVVLGSGWSSAVAALGSSRAVFPQAELPGFITPNAAGHT 69

Query: 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246
           G+L+   I    ++ + GR H YEG+ L     P+R     G   ++ TNAAGGL  D  
Sbjct: 70  GELLSVRIGAHRVLVLAGRIHPYEGHDLRHVVHPVRTACAAGARIIVLTNAAGGLRADMA 129

Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
           VG +++I DH+NL      +PL+G +       F  +  AY  +LR     +A D + + 
Sbjct: 130 VGQLVLISDHLNLT---TRSPLVGTH-------FVDLTNAYTTRLR----KLASDTDPT- 174

Query: 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366
            + EGVY+   GP++ET AE+ MLR+ G D VGMSTVHE I A   G  V   SL+TN  
Sbjct: 175 -LTEGVYAAQPGPHYETPAEIRMLRMLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLA 233

Query: 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
                     NH EV+ AG      I S++  I++
Sbjct: 234 AGITGK--PLNHAEVLAAGTASANRIGSLLADIIA 266

Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.

Mycobacterium leprae (taxid: 1769)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
307185201	331	Purine nucleoside phosphorylase [Campono	0.669	0.833	0.674	1e-115
332017648	332	Purine nucleoside phosphorylase [Acromyr	0.669	0.831	0.664	1e-114
383847084	335	PREDICTED: purine nucleoside phosphoryla	0.669	0.823	0.653	1e-112
91079867	308	PREDICTED: similar to AGAP005945-PB [Tri	0.686	0.918	0.636	1e-110
328784609	327	PREDICTED: purine nucleoside phosphoryla	0.682	0.859	0.632	1e-109
389609203	318	purine nucleoside phosphorylase [Papilio	0.679	0.880	0.642	1e-108
380029277	332	PREDICTED: purine nucleoside phosphoryla	0.747	0.927	0.583	1e-108
156537211	323	PREDICTED: purine nucleoside phosphoryla	0.682	0.869	0.615	1e-108
389611409	324	purine nucleoside phosphorylase [Papilio	0.679	0.864	0.629	1e-106
357626311	318	hypothetical protein KGM_22551 [Danaus p	0.669	0.867	0.619	1e-105

>gi|307185201|gb|EFN71333.1| Purine nucleoside phosphorylase [Camponotus floridanus]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/286 (67%), Positives = 234/286 (81%), Gaps = 10/286 (3%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLST----------IADSITDRHIFPYDTI 174
           +YT+E++Q  A++LLD I IRPKIGIICGSG+ +          IA+S+ D+  FPY+ I
Sbjct: 34  TYTFEILQESAQYLLDRIKIRPKIGIICGSGMGSYVQNELCPGLIAESLVDKQCFPYEEI 93

Query: 175 PYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLA 234
           P+FPVSTV GH GQ+VFG + G+P+MCMQGRFHYYEGYPLWKCAMP+RVMKLVGVTHL+A
Sbjct: 94  PHFPVSTVKGHTGQMVFGYLRGVPVMCMQGRFHYYEGYPLWKCAMPVRVMKLVGVTHLIA 153

Query: 235 TNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAA 294
           TNAAGGLNP Y VGDIMI+KDH+N+MGFAGNNPL G N+DRFGPRFPPMNKAYN  L   
Sbjct: 154 TNAAGGLNPTYNVGDIMIVKDHVNMMGFAGNNPLQGPNDDRFGPRFPPMNKAYNDTLIEI 213

Query: 295 TLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGM 354
              +A ++ +S+ V +GVY+ +GGPNFETVAEL MLR+ GVDAVGMSTVHEVITA HC +
Sbjct: 214 GSQVAEEMGISNTVHKGVYTCLGGPNFETVAELKMLRMIGVDAVGMSTVHEVITARHCDL 273

Query: 355 TVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
           TV AFSLITN+CVTDY++H EANHEEV+  GK R P+++  V+RIV
Sbjct: 274 TVFAFSLITNQCVTDYENHGEANHEEVMDVGKSRQPILQEFVSRIV 319

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017648|gb|EGI58340.1| Purine nucleoside phosphorylase [Acromyrmex echinatior]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/286 (66%), Positives = 232/286 (81%), Gaps = 10/286 (3%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLST----------IADSITDRHIFPYDTI 174
           +YT+E +Q  A++LL+ I IRPKIGIICGSG+ +          IA+S+ D+  FPY+ I
Sbjct: 35  TYTFETLQESAQYLLNRIKIRPKIGIICGSGMGSYEQNELCPGSIAESLVDKQCFPYEEI 94

Query: 175 PYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLA 234
           P+FP+STV GH GQ+VFG + G+P+MCMQGRFHYYEGYPLWKCAMP+RVMKLVGVTHL+A
Sbjct: 95  PHFPISTVKGHTGQMVFGYLQGVPVMCMQGRFHYYEGYPLWKCAMPVRVMKLVGVTHLIA 154

Query: 235 TNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAA 294
           TNAAGGLNP Y+VGDIMI+KDH+N+MGFAGNNPL G N+DRFGPRFPPMNKAYN  L   
Sbjct: 155 TNAAGGLNPTYKVGDIMIVKDHVNMMGFAGNNPLQGPNDDRFGPRFPPMNKAYNATLMEI 214

Query: 295 TLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGM 354
              +A ++ +  IV +GVY+ +GGPNFETVAEL MLR+ GVDAVGMSTVHEVITA HC +
Sbjct: 215 GRQVAEEMGIGDIVHKGVYTCLGGPNFETVAELKMLRMIGVDAVGMSTVHEVITARHCDL 274

Query: 355 TVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
           TV  FSLITN+CVTDY+DH EANHEEV+  GK R P+++  V++IV
Sbjct: 275 TVFTFSLITNQCVTDYEDHYEANHEEVMDVGKARQPILQEFVSKIV 320

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847084|ref|XP_003699185.1| PREDICTED: purine nucleoside phosphorylase-like [Megachile rotundata]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/286 (65%), Positives = 232/286 (81%), Gaps = 10/286 (3%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLS----------TIADSITDRHIFPYDTI 174
           +Y++E +Q  A++LLD + IRPKIGIICGSG+           ++A+S+ D+  FPY  I
Sbjct: 38  AYSFEALQESAQYLLDRVKIRPKIGIICGSGMGANEQNELCPGSLAESLEDKQCFPYAEI 97

Query: 175 PYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLA 234
           P+FPVSTV GH GQ+VFG + G+P+MCMQGRFHYYEGYPLWKCAMP+RVMKLVGVTHL+A
Sbjct: 98  PHFPVSTVKGHTGQMVFGYLQGVPVMCMQGRFHYYEGYPLWKCAMPVRVMKLVGVTHLIA 157

Query: 235 TNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAA 294
           TNAAGGLNP Y+VGDIM++KDH+N+MGFAGNNPL G N+DRFGPRFPPMNKAY+ +L   
Sbjct: 158 TNAAGGLNPTYKVGDIMMVKDHVNMMGFAGNNPLQGPNDDRFGPRFPPMNKAYDLKLLEL 217

Query: 295 TLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGM 354
             ++A ++ +S IV  GVY+ +GGPNFETVAEL MLR+ GVDAVGMSTVHEVITA HC +
Sbjct: 218 GQEVAEEMGISDIVHRGVYTCLGGPNFETVAELKMLRMVGVDAVGMSTVHEVITARHCDL 277

Query: 355 TVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
           TV AFSLITN+CVTDY++H EANHEEV+  GK R  +++  V R+V
Sbjct: 278 TVFAFSLITNQCVTDYENHLEANHEEVMDVGKARQSLLQDYVARMV 323

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079867|ref|XP_967070.1| PREDICTED: similar to AGAP005945-PB [Tribolium castaneum] gi|270004553|gb|EFA01001.1| hypothetical protein TcasGA2_TC003914 [Tribolium castaneum]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 229/283 (80%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
           SYTYE +   A+FLL  +  +P IGIICGSG+  +AD++ ++  FPY+ IP+FPVSTVPG
Sbjct: 24  SYTYENLSETAEFLLTRVPFKPSIGIICGSGMGCLADALENKKEFPYEIIPHFPVSTVPG 83

Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
           H G+LVFG ++GIP++CMQGRFHYYEGYPLWKCAMP+RVMKL+GV+HL+A+NAAGGLN  
Sbjct: 84  HMGKLVFGYLSGIPVVCMQGRFHYYEGYPLWKCAMPVRVMKLIGVSHLIASNAAGGLNDK 143

Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
           +++GDIM++KDHIN++GFAGNNPL G N++RFGPRFPPMNKAYN++L      +AR+L M
Sbjct: 144 FKIGDIMLVKDHINMLGFAGNNPLKGPNDERFGPRFPPMNKAYNRELIDQGKKVARELGM 203

Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
             +V EG Y+ +GGPNFETVAEL ML++ G DAVGMSTVHEVITA HC MTV AFSLITN
Sbjct: 204 GGMVHEGTYTCLGGPNFETVAELRMLKMLGADAVGMSTVHEVITARHCDMTVLAFSLITN 263

Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407
            C+TDY+ H + NHEEV+  GK+R   +K  V ++V YI +H 
Sbjct: 264 ICITDYECHDKPNHEEVMDVGKMRQDTLKLFVKKLVEYIAQHN 306

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784609|ref|XP_391850.3| PREDICTED: purine nucleoside phosphorylase-like [Apis mellifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/291 (63%), Positives = 229/291 (78%), Gaps = 10/291 (3%)

Query: 120 EGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLST----------IADSITDRHIF 169
           E    +YT+E +Q  A++LLD I ++PK+GIICGSG+ +          +AD + ++   
Sbjct: 28  ESSHSTYTFEDLQEAAQYLLDRIKLKPKLGIICGSGMRSNEQYELCPGSLADCLENKQYI 87

Query: 170 PYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGV 229
           PY  IP+FPVSTV GH+GQ+VFG +N +PIMCMQGRFHYYEGYPLWKCAMP+RVMKLVGV
Sbjct: 88  PYQEIPHFPVSTVKGHRGQMVFGYLNSVPIMCMQGRFHYYEGYPLWKCAMPVRVMKLVGV 147

Query: 230 THLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNK 289
           THL+ATNAAGGLNP Y+VGDIMI+KDH+N+MGFAGNNPL G N+DRFGPRFPPMNKAYN 
Sbjct: 148 THLIATNAAGGLNPTYKVGDIMIVKDHLNMMGFAGNNPLQGPNDDRFGPRFPPMNKAYNA 207

Query: 290 QLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITA 349
           +L    L +A+++ +S IV +GVY+ IGGPNFETVAEL ML++ GVDAVGMSTVHEVITA
Sbjct: 208 ELLKIGLQVAKEMGISDIVHKGVYACIGGPNFETVAELRMLKMIGVDAVGMSTVHEVITA 267

Query: 350 HHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
            HC + V AFSLITN+C  DYD   +A+HEEVI  GK +  +++  V+ IV
Sbjct: 268 RHCDLIVFAFSLITNQCTMDYDKCEQASHEEVIAVGKGKQTLLQEYVSNIV 318

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609203|dbj|BAM18213.1| purine nucleoside phosphorylase [Papilio xuthus]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 228/280 (81%)

Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
           Y+YE +  IA FLL  +SIRP IG+ICGSG+ ++A++ITD    PY+ IP FPVSTV GH
Sbjct: 35  YSYETLVEIANFLLSRVSIRPYIGVICGSGMGSLAETITDAECIPYEDIPNFPVSTVEGH 94

Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+LVFG ++GIP++ MQGRFHYYEGYPLWKC +P+RVMKL+GV  L+ATNAAGGLNP+Y
Sbjct: 95  HGKLVFGRLDGIPVVAMQGRFHYYEGYPLWKCCLPVRVMKLIGVKTLIATNAAGGLNPNY 154

Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
           ++GD+MI+KDHIN+MGFAGNNPLLG N++RFGPRF PMNKAYN + R     +A++LN+ 
Sbjct: 155 KIGDLMIMKDHINMMGFAGNNPLLGPNDERFGPRFIPMNKAYNYEYRQIAKQLAKELNIE 214

Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
           ++V+EGVY+ +GGPNFETVAELNML++ GVDAVGMSTVHEVI A HC M V A SLITN+
Sbjct: 215 NLVREGVYTCLGGPNFETVAELNMLKMVGVDAVGMSTVHEVIIARHCDMKVFALSLITNE 274

Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
           CVT YD   EANHEEV+  G++R  +++  VTR+V+   E
Sbjct: 275 CVTRYDQDDEANHEEVLDVGRMRQDILRKYVTRLVAKFAE 314

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029277|ref|XP_003698303.1| PREDICTED: purine nucleoside phosphorylase-like [Apis florea]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/322 (58%), Positives = 238/322 (73%), Gaps = 14/322 (4%)

Query: 93  PHCNIGTIGHVDHGKTTLTAAITKGLM----EGMLGSYTYELIQSIAKFLLDSISIRPKI 148
           P  +  TI   +H      +A    L+    E    +YT+E +Q  A++LLD I ++PK+
Sbjct: 2   PFADTETINGYNHHPQLKQSAKNNELLQTVEESSHSTYTFEDLQEAAQYLLDRIKLKPKL 61

Query: 149 GIICGSGLST----------IADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIP 198
           GIICGSG+ +          +AD + ++   PY  IP+FPVSTV GH+GQ+VFG +N +P
Sbjct: 62  GIICGSGMRSNEQNELCPGSLADCLENKQCIPYQEIPHFPVSTVKGHRGQMVFGYLNSVP 121

Query: 199 IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHIN 258
           IMCMQGRFHYYEGYPLWKCAMP+RVMKLVGVTHL+ATNAAGGLNP Y+VGDIM++KDH+N
Sbjct: 122 IMCMQGRFHYYEGYPLWKCAMPVRVMKLVGVTHLIATNAAGGLNPTYKVGDIMMVKDHLN 181

Query: 259 LMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGG 318
           +MGFAGNNPL G N+DRFGPRFPPMNKAYN +L      +A+++ +S IV +GVY+ IGG
Sbjct: 182 MMGFAGNNPLQGPNDDRFGPRFPPMNKAYNAELLKIGQQVAKEMGISDIVHKGVYACIGG 241

Query: 319 PNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH 378
           PNFETVAEL ML++ GVDAVGMSTVHEVITA HC + V AFSLITN+C  DYD   +A+H
Sbjct: 242 PNFETVAELRMLKMIGVDAVGMSTVHEVITARHCDLIVFAFSLITNQCTMDYDKCEQASH 301

Query: 379 EEVIQAGKLRGPMIKSMVTRIV 400
           EEVI  GK +  +++  V+ IV
Sbjct: 302 EEVIAVGKGKQTLLQEYVSNIV 323

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537211|ref|XP_001604902.1| PREDICTED: purine nucleoside phosphorylase-like [Nasonia vitripennis]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 173/281 (61%), Positives = 224/281 (79%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
            +++E +Q  A++LLD  SIRP+IGIICGSGL  I +++T +  FPY+ IP+FP STV G
Sbjct: 36  QFSFEALQESAQYLLDRTSIRPRIGIICGSGLGPITETLTQKQCFPYEEIPHFPTSTVKG 95

Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
           H GQ+VFG + G+P+MCMQGRFHYYEGYPLWKC+MP+RVMKLVG +HL+ TNAAGGLN  
Sbjct: 96  HAGQMVFGYLQGVPVMCMQGRFHYYEGYPLWKCSMPVRVMKLVGASHLIVTNAAGGLNDK 155

Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
           + VGDIM++KDH+N+MGFAGNNPL G N+DRFGPRFPPMN+AY+KQL      +  ++ +
Sbjct: 156 FSVGDIMLMKDHVNMMGFAGNNPLQGPNDDRFGPRFPPMNRAYDKQLLTICDKVVEEMGI 215

Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
            +IV +GVY+ +GGPN+ETVAE+ +L++ GVDAVGMSTVHEVITA HC M V AFSLITN
Sbjct: 216 QNIVHKGVYTCLGGPNYETVAEMKLLKVLGVDAVGMSTVHEVITARHCDMKVVAFSLITN 275

Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
            CV DY+DH EA+HE+V+   K    ++K  V+R+V +I E
Sbjct: 276 MCVADYEDHTEADHEDVVIIAKRMEGLLKEFVSRVVDHIKE 316

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611409|dbj|BAM19316.1| purine nucleoside phosphorylase [Papilio polytes]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/286 (62%), Positives = 228/286 (79%), Gaps = 6/286 (2%)

Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLST------IADSITDRHIFPYDTIPYFPV 179
           Y+YE +  IA FLL  +SIRP IG+ICGSG+ +      +A++ITD    PY+ IP FPV
Sbjct: 35  YSYETLVEIANFLLSRVSIRPCIGVICGSGMGSYWKQGSLAETITDAECIPYEDIPNFPV 94

Query: 180 STVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG 239
           STV GH G+LVFG ++GIP++ MQGRFHYYEGYPLWKC +P+RVMKL+GV  L+ATNAAG
Sbjct: 95  STVEGHHGKLVFGRLDGIPVVAMQGRFHYYEGYPLWKCCLPVRVMKLIGVKTLIATNAAG 154

Query: 240 GLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA 299
           GLNP+Y++GD+MI+KDHIN+MGFAGNNPLLG N++RFGPRF PMNKAYN + R     +A
Sbjct: 155 GLNPNYKIGDLMIMKDHINMMGFAGNNPLLGPNDERFGPRFIPMNKAYNYEYRQIAKQLA 214

Query: 300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAF 359
           ++LN+ ++V+EGVY+ +GGPNFETVAELNML++ GVDAVGMSTVHEVI A HC M V A 
Sbjct: 215 KELNIENLVREGVYTCLGGPNFETVAELNMLKMVGVDAVGMSTVHEVIIARHCDMKVFAL 274

Query: 360 SLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
           SLITN+CVT YD   EANHEEV+  G++R  +++  VTR+V+   E
Sbjct: 275 SLITNECVTRYDQDDEANHEEVLDVGRMRQDILRKYVTRLVAKFAE 320

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626311|gb|EHJ76442.1| hypothetical protein KGM_22551 [Danaus plexippus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 171/276 (61%), Positives = 224/276 (81%)

Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
           Y+YE++   A FLL    +RP IG+ICGSG+ ++A++I       Y+ IP FP+STV GH
Sbjct: 33  YSYEMLVETANFLLSKTDVRPIIGVICGSGMGSLAENIAQPECIAYEDIPNFPISTVEGH 92

Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+LVFG I  +P++ MQGRFHYYEGYPLWKC +P+RVMKL+GV  L+ATNAAGGLNP+Y
Sbjct: 93  HGKLVFGYIGEVPVVAMQGRFHYYEGYPLWKCCLPVRVMKLLGVKALIATNAAGGLNPNY 152

Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
           ++GD+MI++DHIN+MGFAGNNPL G N++RFGPRFPPMNKAYN + R    ++A++LN+ 
Sbjct: 153 KIGDVMIVRDHINMMGFAGNNPLHGPNDERFGPRFPPMNKAYNYEFRKVAKEVAKELNID 212

Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
           +IV+EGVY+ +GGPNFETVAELNML++ GVDAVGMSTVHEVITA HC M+V A SLITN+
Sbjct: 213 NIVREGVYTCLGGPNFETVAELNMLKMLGVDAVGMSTVHEVITARHCDMSVFALSLITNE 272

Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
           CVT YD  AEANHEEV+  G++R  +++  V+++V+
Sbjct: 273 CVTSYDHDAEANHEEVLDVGRMRQGILRDYVSKLVN 308

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
FB|FBgn0035348	356	CG16758 [Drosophila melanogast	0.674	0.780	0.585	2.3e-87
ZFIN|ZDB-GENE-040426-2553	293	pnp5a "purine nucleoside phosp	0.686	0.965	0.563	2e-86
ZFIN|ZDB-GENE-040912-54	294	pnp5b "purine nucleoside phosp	0.674	0.945	0.557	1.1e-80
UNIPROTKB|P55859	289	PNP "Purine nucleoside phospho	0.684	0.975	0.531	1.8e-80
ZFIN|ZDB-GENE-040426-1800	286	pnp6 "purine nucleoside phosph	0.669	0.965	0.536	2.6e-79
UNIPROTKB|P00491	289	PNP "Purine nucleoside phospho	0.684	0.975	0.528	3.8e-78
UNIPROTKB|F1S8H8	308	PNP "Purine nucleoside phospho	0.689	0.922	0.512	4.3e-77
ZFIN|ZDB-GENE-040426-1887	304	pnp4b "purine nucleoside phosp	0.660	0.894	0.525	2.1e-75
MGI|MGI:97365	289	Pnp "purine-nucleoside phospho	0.684	0.975	0.510	2.5e-74
ZFIN|ZDB-GENE-040625-83	291	pnp4a "purine nucleoside phosp	0.665	0.941	0.518	6.5e-74

FB|FBgn0035348 CG16758 [Drosophila melanogaster (taxid:7227)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 164/280 (58%), Positives = 206/280 (73%)

Query:   126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
             Y YE+I+ IA F+     +RPKIGIICGSGL ++AD I D  IF Y+ IP FPVSTV GH
Sbjct:    72 YPYEVIEEIADFITKGSGMRPKIGIICGSGLGSLADMIQDPKIFEYEKIPNFPVSTVEGH 131

Query:   186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
              G+LV G + G  +M MQGRFH+YEGYPL KC+MP+RVMKL GV +L ATNAAGG+NP +
Sbjct:   132 AGRLVVGTLEGATVMAMQGRFHFYEGYPLAKCSMPVRVMKLCGVEYLFATNAAGGINPRF 191

Query:   246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
              VGDIM++ DH+N++GFAGN+PL G N+ RFGPRFP +  +YNK L    ++IA+ + + 
Sbjct:   192 AVGDIMLMHDHVNMLGFAGNSPLQGPNDPRFGPRFPALVNSYNKDLINKAIEIAKAMGIE 251

Query:   306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
             S +  GVYS +GGPN+ET+AEL  LR+ GVDAVGMSTVHEVITA HC M V AFSLITNK
Sbjct:   252 SNIHVGVYSCLGGPNYETIAELKALRMMGVDAVGMSTVHEVITARHCDMKVFAFSLITNK 311

Query:   366 CVTDYDDHA--EANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
             C T+Y D    EANH+EV+   K R      +V+R++  I
Sbjct:   312 CATEYSDKKDDEANHDEVMAVAKNRQKACCELVSRLIREI 351

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=ISS

GO:0009116 "nucleoside metabolic process" evidence=IEA

ZFIN|ZDB-GENE-040426-2553 pnp5a "purine nucleoside phosphorylase 5a" [Danio rerio (taxid:7955)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 160/284 (56%), Positives = 208/284 (73%)

Query:   126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
             Y++E  Q+ A +LL   ++RP +GI+CGSGL  +AD++ D+  F Y  IP FP STV GH
Sbjct:     9 YSFEDCQATADWLLSQTAVRPLVGIVCGSGLGGLADALKDQVAFNYRDIPNFPQSTVHGH 68

Query:   186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
              G+LVFG + G P +CMQGRFH YEGYP+ K  MP+R+ K++GV  ++ TNAAGGLN DY
Sbjct:    69 AGRLVFGTLKGRPCVCMQGRFHLYEGYPIQKITMPMRIFKMLGVETVILTNAAGGLNQDY 128

Query:   246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
             +VGDIMIIKDH+N+ GFAGNNPL G N++RFG RFP M+ AY+++L+   LD+  +L  S
Sbjct:   129 KVGDIMIIKDHLNMPGFAGNNPLAGHNDERFGVRFPCMSDAYDRELQQMALDVGSELGFS 188

Query:   306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
               ++EGVY V+GGP+FET+AE  ML   G DAVGMSTVHEVI A HCGM V A SLITNK
Sbjct:   189 DFLREGVYCVLGGPSFETIAECRMLHKLGADAVGMSTVHEVIVARHCGMRVFALSLITNK 248

Query:   366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLN 409
              V DYD   +ANHEEV+Q GK R   ++ +V+ I++ + EH  N
Sbjct:   249 AVMDYDSEEKANHEEVLQTGKQRAEQLERLVSTIITRL-EHNNN 291

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

ZFIN|ZDB-GENE-040912-54 pnp5b "purine nucleoside phosphorylase 5b" [Danio rerio (taxid:7955)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 155/278 (55%), Positives = 197/278 (70%)

Query:   126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
             Y+YE   + A +LL     RP +GI+CGSGL  +A  + D  +  Y  IP FP STV GH
Sbjct:     9 YSYEECTATADWLLKRAPERPLVGIVCGSGLGGLAKMLKDELVINYCDIPNFPQSTVHGH 68

Query:   186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
              G+LVFG + G P +CMQGRFH YEGY + K  MPIRV KL+GV  ++ TNAAGGLN D+
Sbjct:    69 AGKLVFGTLKGKPCVCMQGRFHLYEGYAIQKTTMPIRVFKLMGVETVILTNAAGGLNQDF 128

Query:   246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
             +VGDIMIIKDHIN+ GFAG+NPL+G N+DRFG RFP M+ AY++ L+     +A +L+ S
Sbjct:   129 KVGDIMIIKDHINIPGFAGHNPLVGANDDRFGVRFPCMSDAYDRDLQQLVRAVADELDFS 188

Query:   306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
               +++GVYSV+GGP+FET+AE   LR  G DAVGMSTVHEVI A HC M V A SLITNK
Sbjct:   189 VFMRDGVYSVLGGPSFETIAECRALRQLGADAVGMSTVHEVIVARHCDMRVLALSLITNK 248

Query:   366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
              V DY    +ANHEEV++ G LR   ++ +V+ +VS I
Sbjct:   249 AVMDYQSEKKANHEEVLETGALRAKQMEKLVSTVVSRI 286

GO:0003824 "catalytic activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IEA

GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|P55859 PNP "Purine nucleoside phosphorylase" [Bos taurus (taxid:9913)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 150/282 (53%), Positives = 194/282 (68%)

Query:   122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
             M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct:     1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60

Query:   182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
             VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct:    61 VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120

Query:   242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
             NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct:   121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180

Query:   302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
             +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct:   181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query:   362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
             ITNK + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct:   241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

ZFIN|ZDB-GENE-040426-1800 pnp6 "purine nucleoside phosphorylase 6" [Danio rerio (taxid:7955)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 148/276 (53%), Positives = 198/276 (71%)

Query:   125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
             S++YE  +  A +LL +  IRPK+ IICGSGL  +AD + ++ +FPYD IP FP STV G
Sbjct:     8 SFSYEEYKETADWLLANTDIRPKVAIICGSGLGGLADLLDNKQVFPYDKIPRFPHSTVQG 67

Query:   185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
             HKGQLVFG +NG   +CMQGRFH+YEGY +     P+RV  L+G+  L+ TNAAGGLNP 
Sbjct:    68 HKGQLVFGELNGKQCVCMQGRFHFYEGYNVATVTYPVRVFFLLGIETLIVTNAAGGLNPK 127

Query:   245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
             ++VGDIM+IKDHIN+ GFAG NPL G NE+RFG RFP M+ AY++ L       A++L  
Sbjct:   128 FKVGDIMVIKDHINMPGFAGQNPLCGHNEERFGVRFPCMSDAYDRDLAQLVRKTAKELGC 187

Query:   305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
              S ++EGVY ++ GP++ET+AE  +L++ G DAVGMSTV EV+ A HCG+ V   SLITN
Sbjct:   188 DSFLQEGVYCMLAGPSYETIAECRVLQMLGADAVGMSTVPEVVIARHCGIRVFGLSLITN 247

Query:   365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
             K VTDYD    ANHEEV++  ++R   ++ +V+ +V
Sbjct:   248 KVVTDYDSKERANHEEVLETTRMRTEDLQRIVSNVV 283

GO:0003824 "catalytic activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IEA

GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|P00491 PNP "Purine nucleoside phosphorylase" [Homo sapiens (taxid:9606)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 149/282 (52%), Positives = 193/282 (68%)

Query:   122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
             M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct:     1 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST 60

Query:   182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
             VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct:    61 VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120

Query:   242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
             NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct:   121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180

Query:   302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
             +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct:   181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query:   362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
             ITNK + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct:   241 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 282

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042493 "response to drug" evidence=IDA;IMP

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IDA

GO:0006738 "nicotinamide riboside catabolic process" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0034356 "NAD biosynthesis via nicotinamide riboside salvage pathway" evidence=IGI

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=EXP;IDA

GO:0001882 "nucleoside binding" evidence=IDA

GO:0002060 "purine nucleobase binding" evidence=IDA

GO:0042301 "phosphate ion binding" evidence=IDA

GO:0008144 "drug binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0070970 "interleukin-2 secretion" evidence=IMP

GO:0006148 "inosine catabolic process" evidence=IDA

GO:0034418 "urate biosynthetic process" evidence=IDA

GO:0042102 "positive regulation of T cell proliferation" evidence=IDA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0006195 "purine nucleotide catabolic process" evidence=TAS

GO:0043101 "purine-containing compound salvage" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|F1S8H8 PNP "Purine nucleoside phosphorylase" [Sus scrofa (taxid:9823)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 147/287 (51%), Positives = 197/287 (68%)

Query:   126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFP---VSTV 182
             +T+E  Q+ AK+LL     RP++ +ICGSGL  + D +T+  IF Y  IP FP   V TV
Sbjct:    20 FTFEDYQNTAKWLLSHTKHRPQVAVICGSGLGGLTDRLTETQIFNYSEIPNFPRSTVCTV 79

Query:   183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
             PGH G+LVFG++NG   + MQGRFH YEGYPLWK   P+RV +L+GV  L+ TNAAGGLN
Sbjct:    80 PGHAGRLVFGILNGRACVMMQGRFHLYEGYPLWKVTFPVRVFQLLGVDTLVVTNAAGGLN 139

Query:   243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
             P +EVGDIM+I+DHINL GF G NPL G N++RFG RFP M+ AY++ +R       +++
Sbjct:   140 PRFEVGDIMLIRDHINLPGFCGENPLRGPNDERFGVRFPAMSDAYDRDMRQKAHSTWKEM 199

Query:   303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
                  ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSLI
Sbjct:   200 GEQRELQEGTYVMVAGPSFETVAECRLLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLI 259

Query:   363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLN 409
             TNK + DY+   +ANHEEV++AGK     ++  V+ +++ I   + N
Sbjct:   260 TNKVILDYECQKKANHEEVLEAGKQAAQKLEQFVSILIAGIPPPKCN 306

GO:0070970 "interleukin-2 secretion" evidence=IEA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042301 "phosphate ion binding" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0034418 "urate biosynthetic process" evidence=IEA

GO:0034356 "NAD biosynthesis via nicotinamide riboside salvage pathway" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0006738 "nicotinamide riboside catabolic process" evidence=IEA

GO:0006148 "inosine catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0002060 "purine nucleobase binding" evidence=IEA

GO:0001882 "nucleoside binding" evidence=IEA

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1887 pnp4b "purine nucleoside phosphorylase 4b" [Danio rerio (taxid:7955)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 145/276 (52%), Positives = 192/276 (69%)

Query:   136 KFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLIN 195
             ++LL     RPKI ++CGSGL  +AD++ ++  F Y+ IP FPVSTVPGH+G LVFG I 
Sbjct:    20 EWLLSRTRHRPKIAVVCGSGLGLLADNVPNKQSFRYEDIPNFPVSTVPGHEGCLVFGQIK 79

Query:   196 GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKD 255
             G   + MQGRFH YEGY L K   P+R+ KL+GV  ++ TNA+GGL  D++VGDIM+IKD
Sbjct:    80 GKSCVFMQGRFHLYEGYSLCKVTFPVRIFKLMGVETIIVTNASGGLCQDFKVGDIMVIKD 139

Query:   256 HINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSV 315
             HINL GFAG +PL G N++RFG RFP M+ AY+K LR   +DI  +L  S+ V EGVY +
Sbjct:   140 HINLPGFAGQHPLCGPNDERFGIRFPCMSDAYSKDLRKLVMDITAELGYSNFVHEGVYCM 199

Query:   316 IGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE 375
             + GPNFET+AE  ML I G D+VGMSTV EV  A HCG+ V   SLITNK   DY    +
Sbjct:   200 VSGPNFETIAEARMLHILGSDSVGMSTVPEVTVAKHCGLRVMGLSLITNKVSLDYSREEK 259

Query:   376 ANHEEVIQAGKLRGPMIKSMVTRIVSYIGE-HQLNS 410
              NHEEV+Q  K+R  M++++   ++++I   HQ+ +
Sbjct:   260 VNHEEVLQISKMRAEMLQNV---LITFIARSHQVEA 292

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

MGI|MGI:97365 Pnp "purine-nucleoside phosphorylase" [Mus musculus (taxid:10090)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 144/282 (51%), Positives = 190/282 (67%)

Query:   122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
             M   +TYE  ++ AK+LL     RP++ +ICGSGL  +   + +  IF Y+ IP FP ST
Sbjct:     1 MENEFTYEDYETTAKWLLQHTEYRPQVAVICGSGLGGLTAHLKEAQIFDYNEIPNFPQST 60

Query:   182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
             V GH G+LVFGL+NG   + MQGRFH YEGY L K   P+RV  L+GV  L+ TNAAGGL
Sbjct:    61 VQGHAGRLVFGLLNGRCCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVETLVVTNAAGGL 120

Query:   242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
             NP++EVGDIM+I+DHINL GF G NPL G N++RFG RFP M+ AY++ +R       + 
Sbjct:   121 NPNFEVGDIMLIRDHINLPGFCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFTAWKQ 180

Query:   302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
             +     ++EG Y ++ GPNFETVAE  +L++ G DAVGMSTV EVI A HCG+ V  FSL
Sbjct:   181 MGEQRKLQEGTYVMLAGPNFETVAESRLLKMLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query:   362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
             ITNK V DY++  +ANH EV+ AGK     ++  V+ ++  I
Sbjct:   241 ITNKVVMDYENLEKANHMEVLDAGKAAAQTLERFVSILMESI 282

GO:0001882 "nucleoside binding" evidence=ISO

GO:0001916 "positive regulation of T cell mediated cytotoxicity" evidence=IMP

GO:0002060 "purine nucleobase binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=ISO;IMP;IDA

GO:0005576 "extracellular region" evidence=ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISO

GO:0006148 "inosine catabolic process" evidence=ISO;IMP

GO:0006149 "deoxyinosine catabolic process" evidence=IMP

GO:0006161 "deoxyguanosine catabolic process" evidence=IMP

GO:0006183 "GTP biosynthetic process" evidence=IMP

GO:0006738 "nicotinamide riboside catabolic process" evidence=ISO

GO:0006955 "immune response" evidence=ISO

GO:0008144 "drug binding" evidence=ISO

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA

GO:0034356 "NAD biosynthesis via nicotinamide riboside salvage pathway" evidence=ISO

GO:0034418 "urate biosynthetic process" evidence=ISO;IMP

GO:0042102 "positive regulation of T cell proliferation" evidence=ISO;IMP

GO:0042278 "purine nucleoside metabolic process" evidence=ISO;IC;IDA;IMP

GO:0042301 "phosphate ion binding" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045579 "positive regulation of B cell differentiation" evidence=IMP

GO:0045739 "positive regulation of DNA repair" evidence=IMP

GO:0046070 "dGTP metabolic process" evidence=IMP

GO:0046115 "guanosine catabolic process" evidence=IMP

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=ISO;IMP

GO:0070970 "interleukin-2 secretion" evidence=ISO

ZFIN|ZDB-GENE-040625-83 pnp4a "purine nucleoside phosphorylase 4a" [Danio rerio (taxid:7955)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 142/274 (51%), Positives = 184/274 (67%)

Query:   128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG 187
             +E  Q  A +LL     RPK+ IICGSGL  +AD +  +  F Y  IP FP STV GH G
Sbjct:     9 HEDYQRAADWLLSQTQHRPKVAIICGSGLGMLADGLKCQDSFKYSDIPGFPQSTVKGHAG 68

Query:   188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247
             +LVFG + G   +CMQGRFH YEG+ L K   P+RV KL+GV  L+ TNAAG L   Y  
Sbjct:    69 RLVFGELKGKTCVCMQGRFHMYEGHSLSKVTFPVRVFKLLGVDTLIVTNAAGSLADSYNC 128

Query:   248 GDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSI 307
             GDIMII+DHIN  G AG NPL G N+++FGPRFPPM+  Y++ LR   LDI + + +S  
Sbjct:   129 GDIMIIRDHINFPGLAGLNPLNGPNDEKFGPRFPPMSGVYDRGLRKMALDICKGMGVSQY 188

Query:   308 VKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367
             V+EGVY ++GGPNFE++AE  +L   GVDAVGMST  EV+ A HCG+ V   SLITNK V
Sbjct:   189 VQEGVYCMVGGPNFESIAEARLLHRLGVDAVGMSTAPEVLVASHCGIRVFGLSLITNKVV 248

Query:   368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
               Y+D+   NHE V++  K+R   ++++VT ++S
Sbjct:   249 KSYEDNETVNHEAVLEVSKMRSETLQALVTELIS 282

GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA

GO:0004731 "purine-nucleoside phosphorylase activity" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0A539	PUNA_MYCBO	2, ., 4, ., 2, ., 1	0.3236	0.6189	0.9514	yes	N/A
P0A538	PUNA_MYCTU	2, ., 4, ., 2, ., 1	0.3236	0.6189	0.9514	yes	N/A
P46354	PUNA_BACSU	2, ., 4, ., 2, ., 1	0.4744	0.6286	0.9557	yes	N/A
P55859	PNPH_BOVIN	2, ., 4, ., 2, ., 1	0.5319	0.6844	0.9757	yes	N/A
P46862	PUNA_MYCLE	2, ., 4, ., 2, ., 1	0.3381	0.6189	0.9514	yes	N/A
Q9UTG1	PNPH_SCHPO	2, ., 4, ., 2, ., 1	0.4492	0.6286	0.8222	yes	N/A
P00491	PNPH_HUMAN	2, ., 4, ., 2, ., 1	0.5283	0.6844	0.9757	yes	N/A
P85973	PNPH_RAT	2, ., 4, ., 2, ., 1	0.5	0.6844	0.9757	yes	N/A
P23492	PNPH_MOUSE	2, ., 4, ., 2, ., 1	0.5106	0.6844	0.9757	yes	N/A
Q05788	PNPH_YEAST	2, ., 4, ., 2, ., 1	0.4354	0.6189	0.8199	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.4.2.1	0.824
3rd Layer	2.4.2	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	412
PRK08202	272	PRK08202, PRK08202, purine nucleoside phosphorylas	1e-124
TIGR01700	249	TIGR01700, PNPH, purine nucleoside phosphorylase I	1e-113
TIGR01697	248	TIGR01697, PNPH-PUNA-XAPA, inosine/guanosine/xanth	1e-113
COG0005	262	COG0005, Pnp, Purine nucleoside phosphorylase [Nuc	8e-76
TIGR01699	248	TIGR01699, XAPA, xanthosine phosphorylase	9e-62
TIGR01698	237	TIGR01698, PUNP, purine nucleotide phosphorylase	6e-61
pfam01048	232	pfam01048, PNP_UDP_1, Phosphorylase superfamily	1e-44
cd01884	195	cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b	2e-17
TIGR01694	241	TIGR01694, MTAP, 5'-deoxy-5'-methylthioadenosine p	3e-17
PRK00049	396	PRK00049, PRK00049, elongation factor Tu; Reviewed	1e-16
PRK12735	396	PRK12735, PRK12735, elongation factor Tu; Reviewed	2e-16
PRK08666	261	PRK08666, PRK08666, 5'-methylthioadenosine phospho	2e-16
PRK12736	394	PRK12736, PRK12736, elongation factor Tu; Reviewed	2e-16
PRK00049	396	PRK00049, PRK00049, elongation factor Tu; Reviewed	4e-14
PRK12735	396	PRK12735, PRK12735, elongation factor Tu; Reviewed	8e-14
PRK12736	394	PRK12736, PRK12736, elongation factor Tu; Reviewed	1e-13
PLN03127	447	PLN03127, PLN03127, Elongation factor Tu; Provisio	1e-13
COG0050	394	COG0050, TufB, GTPases - translation elongation fa	2e-13
cd01884	195	cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b	4e-13
CHL00071	409	CHL00071, tufA, elongation factor Tu	4e-13
COG0050	394	COG0050, TufB, GTPases - translation elongation fa	1e-12
PLN03127	447	PLN03127, PLN03127, Elongation factor Tu; Provisio	7e-12
PRK09136	245	PRK09136, PRK09136, 5'-methylthioadenosine phospho	7e-12
PRK08931	289	PRK08931, PRK08931, 5'-methylthioadenosine phospho	9e-12
PRK08564	267	PRK08564, PRK08564, 5'-methylthioadenosine phospho	9e-12
TIGR00485	394	TIGR00485, EF-Tu, translation elongation factor TU	1e-11
PRK07432	290	PRK07432, PRK07432, 5'-methylthioadenosine phospho	3e-10
PLN03126	478	PLN03126, PLN03126, Elongation factor Tu; Provisio	5e-10
TIGR00485	394	TIGR00485, EF-Tu, translation elongation factor TU	1e-09
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	4e-09
CHL00071	409	CHL00071, tufA, elongation factor Tu	6e-09
PRK07823	264	PRK07823, PRK07823, 5'-methylthioadenosine phospho	1e-07
PLN03126	478	PLN03126, PLN03126, Elongation factor Tu; Provisio	2e-06
PRK04000	411	PRK04000, PRK04000, translation initiation factor	2e-06
COG5257	415	COG5257, GCD11, Translation initiation factor 2, g	2e-06
cd01888	197	cd01888, eIF2_gamma, Gamma subunit of initiation f	4e-06
TIGR03680	406	TIGR03680, eif2g_arch, translation initiation fact	1e-05
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	4e-05
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	1e-04
PRK12317	425	PRK12317, PRK12317, elongation factor 1-alpha; Rev	1e-04
cd04171	170	cd04171, SelB, SelB, the dedicated elongation fact	5e-04
COG5258	527	COG5258, GTPBP1, GTPase [General function predicti	6e-04
PRK10512	614	PRK10512, PRK10512, selenocysteinyl-tRNA-specific	6e-04
PTZ00327	460	PTZ00327, PTZ00327, eukaryotic translation initiat	6e-04
cd01885	218	cd01885, EF2, Elongation Factor 2 (EF2) in archaea	0.002
COG0480	697	COG0480, FusA, Translation elongation factors (GTP	0.002
PRK07560	731	PRK07560, PRK07560, elongation factor EF-2; Review	0.002
cd01889	192	cd01889, SelB_euk, SelB, the dedicated elongation	0.003
COG5256	428	COG5256, TEF1, Translation elongation factor EF-1a	0.004

>gnl|CDD|236183 PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional

 Score =  359 bits (923), Expect = e-124
 Identities = 134/274 (48%), Positives = 176/274 (64%), Gaps = 8/274 (2%)

Query: 128 YELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHK 186
            E I+  A F+ +     +P+IG+I GSGL  +AD I +  + PY  IP FPVSTV GH 
Sbjct: 3   LEKIEEAAAFIREKTGAFKPEIGLILGSGLGALADEIENAVVIPYADIPGFPVSTVEGHA 62

Query: 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246
           G+LV G + G P++ MQGRFHYYEGY +     P+RVMK +GV  L+ TNAAGGLNPD+ 
Sbjct: 63  GELVLGRLGGKPVLAMQGRFHYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLNPDFG 122

Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
            GD+M+I DHINL    G NPL+G N+D FGPRFP M+ AY+ +LRA    +A++L +  
Sbjct: 123 PGDLMLISDHINLT---GRNPLIGPNDDEFGPRFPDMSDAYDPELRALAKKVAKELGIP- 178

Query: 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366
            ++EGVY  + GP++ET AE+ MLR  G DAVGMSTV EVI A HCG+ V   S ITN  
Sbjct: 179 -LQEGVYVGVSGPSYETPAEIRMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLA 237

Query: 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
               D     +HEEV++  +   P    +V  I+
Sbjct: 238 AGISD--EPLSHEEVLEVAERAAPKFGRLVKAIL 269

Length = 272

>gnl|CDD|233537 TIGR01700, PNPH, purine nucleoside phosphorylase I, inosine and guanosine-specific

 Score =  332 bits (852), Expect = e-113
 Identities = 133/255 (52%), Positives = 176/255 (69%), Gaps = 6/255 (2%)

Query: 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206
            I II GSGL  +A+ + D  I  Y  IP+FP STV GH G LVFG++ G P++ MQGRF
Sbjct: 1   DIAIILGSGLGPLAEKVEDATIIDYSEIPHFPQSTVVGHAGNLVFGILGGKPVVAMQGRF 60

Query: 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN 266
           H YEGY + K   P+RVMKL+GV  L+ TNAAGG+NP+++VGD+M+I+DHINL GF   N
Sbjct: 61  HMYEGYDMAKVTFPVRVMKLLGVETLVVTNAAGGINPEFKVGDLMLIRDHINLPGF---N 117

Query: 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE 326
           PL G NE+RFG RFP M+ AY++ LR     IA+ LN+   ++EGVY ++GGP++ET AE
Sbjct: 118 PLRGPNEERFGVRFPDMSDAYDRDLRQKAHSIAKQLNIP--LQEGVYVMLGGPSYETPAE 175

Query: 327 LNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK 386
           + +LR  G DAVGMSTV EVI A HCG+ V  FSLITNK     D    + HEEV++A K
Sbjct: 176 VRLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAGILDYEL-SVHEEVMEAAK 234

Query: 387 LRGPMIKSMVTRIVS 401
                ++  V+ +++
Sbjct: 235 QAAEKLEKFVSLLIA 249

This model represents a family of bacterial and metazoan purine phosphorylases acting primarily on inosine and guanosine and not acting on adenosine. PNP-I refers to the nomenclature from Bacillus stearothermophilus where PHP-II refers to the nucleotidase acting on adenosine as the primary substrate.The bacterial enzymes (PUNA) are typified by the Bacilus PupG protein which is involved in the metabolism of nucleosides as a carbon source.Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 249

>gnl|CDD|130758 TIGR01697, PNPH-PUNA-XAPA, inosine/guanosine/xanthosine phosphorylase family

 Score =  330 bits (848), Expect = e-113
 Identities = 136/254 (53%), Positives = 173/254 (68%), Gaps = 7/254 (2%)

Query: 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206
            + II GSGL  +AD + D  I PY+ IP FPVSTV GH G+LVFG + G P++CMQGRF
Sbjct: 1   DVAIILGSGLGALADQVEDAVIIPYEKIPGFPVSTVVGHAGELVFGRLGGKPVVCMQGRF 60

Query: 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN 266
           HYYEGY +     P+RVMKL+GV  L+ TNAAGGLNPD++ GD+MIIKDHINL G    N
Sbjct: 61  HYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLNPDFKPGDLMIIKDHINLPGL---N 117

Query: 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE 326
           PL+G N+DRFG RFP ++ AY+++LR    D+A++L     + EGVY ++ GP++ET AE
Sbjct: 118 PLVGPNDDRFGTRFPDLSNAYDRELRKLAQDVAKELGFP--LTEGVYVMVSGPSYETPAE 175

Query: 327 LNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK 386
           + MLRI G DAVGMSTV EVI A HCG+ V A SLITN      D     +HEEV+ A  
Sbjct: 176 IRMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGITD--VPLSHEEVLAAAA 233

Query: 387 LRGPMIKSMVTRIV 400
                  S++  I+
Sbjct: 234 AAAERFISLLEDII 247

This model is a subset of the subfamily represented by pfam00896 (phosphorylase family 2). This model excludes the methylthioadenosine phosphorylases (MTAP, TIGR01684) which are believed toplay a specific role in the recycling of methionine from methylthioadenosine. In this subfamily is found three clades of purine phosphorylases based on a neighbor-joining tree using the MTAP family as an outgroup. The highest-branching clade (TIGR01698) consists of a group of sequences from both gram positive and gram negative bacteria which have been annotated as purine nucleotide phosphorylases but have not been further characterized as to substrate specificity. Of the two remaining clades, one is xanthosine phosphorylase (XAPA, TIGR01699), is limited to certain gamma proteobacteria and constitutes a special purine phosphorylase found in a specialized operon for xanthosine catabolism. The enzyme also acts on the same purines (inosine and guanosine) as the other characterized members of this subfamily, but is only induced when xanthosine must be degraded. The remaining and largest clade consists of purine nucleotide phosphorylases (PNPH, TIGR01700) from metazoa and bacteria which act primarily on guanosine and inosine (and do not act on adenosine). Sequences from Clostridium (GP:15025051) and Thermotoga (OMNI:TM1596) fall between these last two clades and are uncharacterized with respect to substrate range and operon. Length = 248

>gnl|CDD|223084 COG0005, Pnp, Purine nucleoside phosphorylase [Nucleotide transport and metabolism]

 Score =  236 bits (603), Expect = 8e-76
 Identities = 100/270 (37%), Positives = 142/270 (52%), Gaps = 14/270 (5%)

Query: 135 AKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLI 194
           A F+ +     P IGII GSGL  +AD +  R   PY  I  F V +VPGH G+LV   +
Sbjct: 6   ADFIKERTDEMPMIGIIGGSGLYDLADLLEVR--EPYSDITPFGVPSVPGHAGELV--TL 61

Query: 195 NG-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMII 253
            G +  +   GR H Y  + +   A  IR +K +GV  ++ TNA G L  +Y+ GD+++ 
Sbjct: 62  GGKVAFLARHGRGHSYPPHSVNYRA-NIRALKALGVERVILTNAVGSLREEYKPGDLVVP 120

Query: 254 KDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVY 313
            DHI+       NP  G N+   G RF  M+  Y+ +LR A  + A++L +   ++EGVY
Sbjct: 121 DDHIDFTK--RQNPFYGGND---GVRFVDMSDPYDPELREALAEAAKELRLGHPLQEGVY 175

Query: 314 SVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDH 373
             + GP FET AE+ M R  G D VGMSTV EVI A   G+ V A SL+TN         
Sbjct: 176 VCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAA---GIG 232

Query: 374 AEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
               HEEV++  K     I  ++   ++ +
Sbjct: 233 QPLTHEEVLEVAKENAEKIAKLLAAAIAKL 262

Length = 262

>gnl|CDD|130760 TIGR01699, XAPA, xanthosine phosphorylase

 Score =  199 bits (507), Expect = 9e-62
 Identities = 98/218 (44%), Positives = 134/218 (61%), Gaps = 5/218 (2%)

Query: 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF 206
           ++  I GSGL  +AD I +     Y+ +P FPVSTV GH G+LV G + G+P++CM+GR 
Sbjct: 1   RVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGRG 60

Query: 207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN 266
           H+YEG  +      IR  KL+G   L  TNAAG L P+   G ++ +KDHIN M      
Sbjct: 61  HFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTM---PGT 117

Query: 267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE 326
           P++G+N+DRFG RF  +  AY+ + RA    +A++      + EGV+    GPNFET AE
Sbjct: 118 PMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFP--LTEGVFVSYPGPNFETAAE 175

Query: 327 LNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
           + M++I G D VGMS V EVI+A HC + V A S ITN
Sbjct: 176 IRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITN 213

This model represents a small clade of purine nucleotide phosphorylases found in certain gamma proteobacteria. The gene is part of an operon for the degradation of xanthosine and is induced by xanthosine. The enzyme is also capable of acting on inosine and guanosine (but not adenosine) in a manner similar to those other phosphorylases to which it is closely related (TIGR01698, TIGR01700). Length = 248

>gnl|CDD|130759 TIGR01698, PUNP, purine nucleotide phosphorylase

 Score =  196 bits (501), Expect = 6e-61
 Identities = 92/256 (35%), Positives = 129/256 (50%), Gaps = 22/256 (8%)

Query: 148 IGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207
           + I+ GSG     +++ +    PY  IP FP  TV GH G+L+   I   P++ + GR H
Sbjct: 2   MAIVLGSGWGGAVEALGEPVELPYAEIPGFPAPTVSGHAGELIRVRIGDGPVLVLGGRTH 61

Query: 208 YYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP 267
            YEG        P+R  +  G   L+ TNAAGGL  D+  G  ++I DHINL      +P
Sbjct: 62  AYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTPVLISDHINL---TARSP 118

Query: 268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAEL 327
           L+       GPRF  +  AY+ +LR      A  ++    + EGVY+   GP++ET AE+
Sbjct: 119 LI-------GPRFVDLTDAYSPRLREL----AERVDPP--LAEGVYAWFPGPHYETPAEI 165

Query: 328 NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC--VTDYDDHAEANHEEVIQAG 385
            M  I G D VGMSTV E I A  CG+ V   SL+TN    +T         H EV  AG
Sbjct: 166 RMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAGITGTPLS----HAEVKAAG 221

Query: 386 KLRGPMIKSMVTRIVS 401
              G  + +++  I+ 
Sbjct: 222 AAAGTRLAALLADIIK 237

This clade of purine nucleotide phosphorylases has not been experimentally characterized but is assigned based on strong sequence homology. Closely related clades act on inosine and guanosine (PNPH, TIGR01700), and xanthosine, inosine and guanosine (XAPA, TIGR01699) neither of these will act on adenosine. A more distantly related clade (MTAP, TIGR01694) acts on methylthioadenosine. Length = 237

>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily

 Score =  154 bits (391), Expect = 1e-44
 Identities = 87/258 (33%), Positives = 125/258 (48%), Gaps = 29/258 (11%)

Query: 147 KIGIICGSG--LSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG 204
           KIGII GSG  ++ +A+ + +         PY P S      G+   G + G P++  + 
Sbjct: 1   KIGIIGGSGEEVALLAELLEE--------TPYGPPS----RGGKFYTGTLKGKPVVLARH 48

Query: 205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264
                 G P       IR++K +GV  ++ T  AGGLNPD + GD++I  D IN   F G
Sbjct: 49  G----IGPPNAAIRAEIRLLKELGVKTIIRTGTAGGLNPDLKPGDLVIPTDAIN---FDG 101

Query: 265 NNPLLGVNEDRFGPRFPPMNKA-YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET 323
            +PL G N+   GPRFP M  A Y+ +LRA   + A  L +   V  GVY+   G  FET
Sbjct: 102 TSPLTGPND---GPRFPDMAPAPYDPELRALLEEAAARLGIP--VHRGVYATTDGFYFET 156

Query: 324 VAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQ 383
            AE+ +LR  G DAV M T  E I A   G+   A  +I++      D   E  HEEV +
Sbjct: 157 PAEIRLLRRLGADAVEMETAAEAIVARELGIPFLAIRVISDYAAGGADG--EVTHEEVEE 214

Query: 384 AGKLRGPMIKSMVTRIVS 401
             +        ++  ++ 
Sbjct: 215 VLEEAAERAAKLLLALLE 232

Members of this family include: purine nucleoside phosphorylase (PNP) Uridine phosphorylase (UdRPase) 5'-methylthioadenosine phosphorylase (MTA phosphorylase). Length = 232

>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins

 Score = 79.9 bits (198), Expect = 2e-17
 Identities = 26/47 (55%), Positives = 35/47 (74%)

Query: 9   ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
            D E+ ELVEME+RELL++ G+ GD+ P V+GSAL ALEG +P   +
Sbjct: 132 DDEELLELVEMEVRELLSKYGFDGDDTPIVRGSALKALEGDDPNKWV 178

EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195

>gnl|CDD|233535 TIGR01694, MTAP, 5'-deoxy-5'-methylthioadenosine phosphorylase

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 68/256 (26%), Positives = 100/256 (39%), Gaps = 51/256 (19%)

Query: 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--G 204
            IG+I GSGL  +     D      DT PY   S        +V G + G+ +  +   G
Sbjct: 1   MIGVIGGSGLYDLEGL-KDVEEVNVDT-PYGNPS------APIVVGRVAGVDVAFLPRHG 52

Query: 205 RFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDH 256
           R H            P  V        +K +GV ++++ NA G L  +Y  GD+++    
Sbjct: 53  RGHDI---------PPHEVNYRANIWALKSLGVKYVISVNAVGSLREEYPPGDLVVPDQF 103

Query: 257 INLMGFAGNNPLLGVNEDR-----FGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEG 311
           I+        P    +  +     FG         Y + LR   ++  R L   ++   G
Sbjct: 104 ID---RTSGRPSTFFDGGKVVHVDFGD-------PYCEDLRQRLIESLRRLG-LTVHDGG 152

Query: 312 VYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD 371
            Y    GP F T AE  M +  G D VGM+ V E + A    +     +L     VTDYD
Sbjct: 153 TYVCTEGPRFSTRAESRMFKSWGADIVGMTGVPEAVLARELELCYATLAL-----VTDYD 207

Query: 372 DHAEANH---EEVIQA 384
               A+H   EEV + 
Sbjct: 208 CWISADHVTAEEVEEV 223

This model represents the methylthioadenosine phosphorylase found in metazoa, cyanobacteria and a limited number of archaea such as Sulfolobus, Aeropyrum, Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme is responsible for the first step in the methionine salvage pathway after the transfer of the amino acid moiety from S-adenosylmethionine. The enzyme from human is well-characterized including a crystal structure. A misleading characterization is found for a Sulfolobus solfataricus enzyme which is called a MTAP. In fact, as uncovered by the genome sequence of S. solfataricus, there are at least two nucleotide phosphorylases and the one found in the MTAP clade is not the one annotated as such. The sequence in this clade has not been isolated but is likely to be the authentic SsMTAP as it displays all of the conserved active site residues found in the human enzyme. This explains the finding that the characterized enzyme has greater efficiency towards the purines inosine, guanosine and adenosine over MTA. In fact, this mis-naming of this enzyme has been carried forward to several publications including a crystal stucture. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues [Central intermediary metabolism, Other, Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 241

>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed

 Score = 80.2 bits (199), Expect = 1e-16
 Identities = 28/48 (58%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
           K+ + R KPH N+GTIGHVDHGKTTLTAAITK L +        Y+ I
Sbjct: 3   KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQI 50

Length = 396

>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed

 Score = 80.3 bits (199), Expect = 2e-16
 Identities = 29/48 (60%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
           K+ + R KPH N+GTIGHVDHGKTTLTAAITK L +   G    Y+ I
Sbjct: 3   KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQI 50

Length = 396

>gnl|CDD|169548 PRK08666, PRK08666, 5'-methylthioadenosine phosphorylase; Validated

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRF 280
           I  +K +GV  +LAT+A G LNP+ + GD +I+      + F  N      +    G   
Sbjct: 68  IWALKELGVERILATSAVGSLNPNMKPGDFVILDQ---FLDFTKNRHYTFYDGGESGVVH 124

Query: 281 PPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGM 340
                 Y  +LR A +  AR+L ++     G Y    GP FET AE+ M RI G D VGM
Sbjct: 125 VDFTDPYCPELRKALITAARELGLTYHPG-GTYVCTEGPRFETAAEIRMFRILGGDLVGM 183

Query: 341 STVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN---HEEVIQAGKLRGPMIKSMVT 397
           + V E + A    M     +++TN     Y          H EV++        IK ++ 
Sbjct: 184 TQVPEAVLARELEMCYATVAIVTN-----YAAGISPTKLTHSEVVELMAQNSENIKKLIM 238

Query: 398 RIVSYI 403
           + +  I
Sbjct: 239 KAIELI 244

Length = 261

>gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 29/45 (64%), Positives = 31/45 (68%)

Query: 83  AEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT 127
             K+ + R KPH NIGTIGHVDHGKTTLTAAITK L E  L    
Sbjct: 1   MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAK 45

Length = 394

>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed

 Score = 72.9 bits (180), Expect = 4e-14
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
           D E+ ELVEME+RELL++  + GD+ P ++GSAL ALEG + E  
Sbjct: 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEW 187

Length = 396

>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed

 Score = 72.2 bits (178), Expect = 8e-14
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
           D E+ ELVEME+RELL++  + GD+ P ++GSAL ALEG + E  
Sbjct: 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEW 187

Length = 396

>gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII 56
           D E+ ELVEME+RELL+E  + GD++P ++GSAL ALEG       I
Sbjct: 143 DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAI 189

Length = 394

>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 78  SRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELI 131
               +     ++R KPH N+GTIGHVDHGKTTLTAAITK L E G   +  ++ I
Sbjct: 45  PSPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEI 99

Length = 447

>gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT  L +        Y+ I
Sbjct: 3   KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQI 50

Length = 394

>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins

 Score = 67.2 bits (165), Expect = 4e-13
 Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 93  PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELI 131
           PH N+GTIGHVDHGKTTLTAAITK L + G   +  Y+ I
Sbjct: 1   PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKAKKYDEI 40

EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195

>gnl|CDD|177010 CHL00071, tufA, elongation factor Tu

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGL-MEGMLGSYTYELIQS 133
           ++ + R KPH NIGTIGHVDHGKTTLTAAIT  L  +G   +  Y+ I S
Sbjct: 3   REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDS 52

Length = 409

>gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII 56
           D E+ ELVEME+RELL+E G+ GD+ P ++GSAL ALEG       I
Sbjct: 143 DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKI 189

Length = 394

>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
           D E+ ELVEME+RELL+   + GDE+P ++GSAL AL+G   EIG
Sbjct: 192 DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIG 236

Length = 447

>gnl|CDD|236390 PRK09136, PRK09136, 5'-methylthioadenosine phosphorylase; Validated

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 63/232 (27%), Positives = 91/232 (39%), Gaps = 41/232 (17%)

Query: 148 IGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207
           + II G+GL+ +A  +         T PY   S      G L FG + G  ++     F 
Sbjct: 2   LAIIGGTGLTQLA-GLDIVQRQVVRT-PYGAPS------GPLTFGTLAGREVV-----FL 48

Query: 208 YYEGYPLWKCAMP---------IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHIN 258
              G+      +P         I  +K  G T +LA N  GG++ D   G +++    I+
Sbjct: 49  ARHGHGH---TIPPHKVNYRANIWALKQAGATRVLAVNTVGGIHADMGPGTLVVPDQIID 105

Query: 259 LMG------FAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGV 312
                    F G      V    F    P     Y+  LR   L  AR   +S +V  GV
Sbjct: 106 YTWGRKSTFFEG--DGEEVTHIDFT--HP-----YSPMLRQRLLAAARAAGVS-LVDGGV 155

Query: 313 YSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
           Y+   GP  ET AE+  L   G D VGM+ + E   A   G+     +L+ N
Sbjct: 156 YAATQGPRLETAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVAN 207

Length = 245

>gnl|CDD|181584 PRK08931, PRK08931, 5'-methylthioadenosine phosphorylase; Provisional

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 64/278 (23%), Positives = 109/278 (39%), Gaps = 44/278 (15%)

Query: 144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM- 202
            +  +GII GSG+  I D + D      ++ P+   S        L+FG + G+P++ + 
Sbjct: 2   TKAVLGIIGGSGVYDI-DGLEDARWERVES-PWGEPSD------ALLFGRLGGVPMVFLP 53

Query: 203 -QGRFHYYEGYPLWKCAMPIR----VMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHI 257
             GR     G+ L    +  R     +K  GVT +++ +A G    +   G  +I+   I
Sbjct: 54  RHGR-----GHRLSPSDINYRANIDALKRAGVTDIVSLSACGSFREELPPGTFVIVDQFI 108

Query: 258 NLM-----GFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGV 312
           +        F G   +  V           M      +L       AR   ++ + + G 
Sbjct: 109 DRTFAREKSFFGTGCVAHV----------SMAHPVCPRLGDRLAAAARAEGIT-VHRGGT 157

Query: 313 YSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD- 371
           Y  + GP F T+AE  + R  G D +GM+ + E   A    +     ++     VTDYD 
Sbjct: 158 YLCMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAM-----VTDYDC 212

Query: 372 ---DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406
              DH     + VI          +++V R+   +G  
Sbjct: 213 WHPDHDAVTVDAVIAVLLANADKARALVARLAPDLGAE 250

Length = 289

>gnl|CDD|236290 PRK08564, PRK08564, 5'-methylthioadenosine phosphorylase II; Reviewed

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 77/277 (27%), Positives = 111/277 (40%), Gaps = 47/277 (16%)

Query: 145 RPKIGIICGSGLSTIADSITDRHIFPYDT-----IPYFPVSTVPGHKGQLVFGLINGIPI 199
           +  IGII GSGL        D  IF          PY   S        ++ G I G+ +
Sbjct: 7   KASIGIIGGSGL-------YDPGIFENSKEVKVYTPYGEPS------DNIIIGEIEGVEV 53

Query: 200 MCM--QGRFHYYEGYPLWKCAMPIRV----MKLVGVTHLLATNAAGGLNPDYEVGDIMII 253
             +   GR H     P  K  +  R     +K +GV  ++A +A G L  DY+ GD +I 
Sbjct: 54  AFLPRHGRGHRI---PPHK--INYRANIWALKELGVEWVIAVSAVGSLREDYKPGDFVIP 108

Query: 254 KDHINLMGFAGNNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEG 311
              I+             +    GP      M   +  +LR   ++ A++L +    ++G
Sbjct: 109 DQFID---MTKKREYTFYD----GPVVAHVSMADPFCPELRKIIIETAKELGI-RTHEKG 160

Query: 312 VYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY 370
            Y  I GP F T AE  M R +   D +GM+ V EV  A   GM    ++ I    VTDY
Sbjct: 161 TYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVNLACELGM---CYATIA--MVTDY 215

Query: 371 DDHAE--ANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
           D  AE     EEV +         K ++   +  I E
Sbjct: 216 DVWAEKPVTAEEVTRVMAENTEKAKKLLYEAIPRIPE 252

Length = 267

>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME 120
           K+ + R KPH NIGTIGHVDHGKTTLTAAIT  L +
Sbjct: 3   KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAK 38

This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394

>gnl|CDD|180977 PRK07432, PRK07432, 5'-methylthioadenosine phosphorylase; Provisional

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 67/253 (26%), Positives = 103/253 (40%), Gaps = 45/253 (17%)

Query: 147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPI--MCMQG 204
           KIGII GSGL  + +++ D      +T P+   S        L+ G ++G  +  +   G
Sbjct: 5   KIGIIGGSGLYKM-EALKDVEEVQLET-PFGSPSDA------LIVGTLDGTRVAFLARHG 56

Query: 205 RFHYYEGYPLWKCAMPIRV----MKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHIN-- 258
           R H      L    +P R     MK +GV +L++ +A G L  + +  D+++    I+  
Sbjct: 57  RNHT-----LLPTELPFRANIYAMKQLGVEYLISASAVGSLKEEAKPLDMVVPDQFIDRT 111

Query: 259 ---LMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIV--KEGVY 313
              +  F G   +  +    FG    P        L     D    LN+  +   + G Y
Sbjct: 112 KNRISTFFGEGIVAHIG---FGDPICP-------ALAGVLADAIASLNLPDVTLHRGGTY 161

Query: 314 SVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD-- 371
             + GP F T AE N+ R  G   +GM+ + E   A    +     +L     VTDYD  
Sbjct: 162 VCMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLAL-----VTDYDCW 216

Query: 372 --DHAEANHEEVI 382
             DH     E VI
Sbjct: 217 HPDHDSVTVEMVI 229

Length = 290

>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional

 Score = 60.8 bits (147), Expect = 5e-10
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 83  AEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGL 118
           A +  + R KPH NIGTIGHVDHGKTTLTAA+T  L
Sbjct: 70  AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMAL 105

Length = 478

>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEG 48
           D E+ ELVEME+RELL+E  + GD+ P ++GSAL ALEG
Sbjct: 143 DEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEG 181

This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 18/27 (66%), Positives = 19/27 (70%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGL 118
           K H NIG IGHVDHGKTTLT A+    
Sbjct: 1   KRHRNIGIIGHVDHGKTTLTDALLYVT 27

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|177010 CHL00071, tufA, elongation factor Tu

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 2/47 (4%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEG--KEPEIG 54
           D E+ ELVE+E+RELL++  + GD++P V GSAL ALE   + P+I 
Sbjct: 143 DEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIK 189

Length = 409

>gnl|CDD|236107 PRK07823, PRK07823, 5'-methylthioadenosine phosphorylase; Validated

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 60/254 (23%), Positives = 89/254 (35%), Gaps = 53/254 (20%)

Query: 145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM-- 202
              +G+I GSG  +   S         DT PY P S        +  G + G  +  +  
Sbjct: 5   GAMLGVIGGSGFYSFFGSDAREVNV--DT-PYGPPS------APITIGEVGGRRVAFLPR 55

Query: 203 QGRFHYYEGYPLWKCAMPIRV----MKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHIN 258
            GR H +  +      +P R     ++ +GV  + A  A G L P+   G +++    ++
Sbjct: 56  HGRDHEFSPH-----TVPYRANMWALRALGVRRVFAPCAVGSLRPELGPGTVVVPDQLVD 110

Query: 259 LMG------FAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGV 312
                    F       GV+     P        Y   LRAA L +        +V  G 
Sbjct: 111 RTSGRAQTYFDSG----GVHVSFADP--------YCPTLRAAALGLPG------VVDGGT 152

Query: 313 YSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDD 372
             V+ GP F T AE       G   V M+   E + A    +   A +L     VTD D 
Sbjct: 153 MVVVQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIAL-----VTDLDA 207

Query: 373 HAEA----NHEEVI 382
             EA       +V 
Sbjct: 208 GVEAGEGVKAVDVF 221

Length = 264

>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE 47
           D E+ ELVE+E+RELL+   + GD++P + GSAL ALE
Sbjct: 212 DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249

Length = 478

>gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 93  PHCNIGTIGHVDHGKTTLTAAIT 115
           P  NIG +GHVDHGKTTL  A+T
Sbjct: 8   PEVNIGMVGHVDHGKTTLVQALT 30

Length = 411

>gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
               +P  NIG +GHVDHGKTTLT A++
Sbjct: 4   PKHIQPEVNIGMVGHVDHGKTTLTKALS 31

Length = 415

>gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma)

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 96  NIGTIGHVDHGKTTLTAAIT 115
           NIGTIGHV HGKTTL  A++
Sbjct: 2   NIGTIGHVAHGKTTLVKALS 21

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the selenocysteine-specific elongation factor from eubacteria. The translational factor components of the ternary complex, IF2 in eubacteria and eIF2 in eukaryotes are not the same protein (despite their unfortunately similar names). Both factors are GTPases; however, eubacterial IF-2 is a single polypeptide, while eIF2 is heterotrimeric. eIF2-gamma is a member of the same family as eubacterial IF2, but the two proteins are only distantly related. This family includes translation initiation, elongation, and release factors. Length = 197

>gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 17/23 (73%), Positives = 19/23 (82%)

Query: 93  PHCNIGTIGHVDHGKTTLTAAIT 115
           P  NIG +GHVDHGKTTLT A+T
Sbjct: 3   PEVNIGMVGHVDHGKTTLTKALT 25

This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/20 (70%), Positives = 17/20 (85%)

Query: 96  NIGTIGHVDHGKTTLTAAIT 115
           N+G IGHVDHGKTTLT ++ 
Sbjct: 1   NVGVIGHVDHGKTTLTGSLL 20

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 6   ID-AADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCAL 46
           ID   DAE+ E+VE   RELL + G+ G+ VP V GSAL   
Sbjct: 128 IDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTGE 169

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 89  SRDKPHCNIGTIGHVDHGKTTLT 111
           +++KPH N+  IGHVDHGK+TL 
Sbjct: 1   AKEKPHLNLAVIGHVDHGKSTLV 23

Length = 425

>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 97  IGTIGHVDHGKTTLTAAIT 115
           IGT GH+DHGKTTL  A+T
Sbjct: 2   IGTAGHIDHGKTTLIKALT 20

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170

>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only]

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 65  EINKLNVFVPLINSRRGYAEKQVYSRDK----PHCNIGTIGHVDHGKTTLTAAITKG 117
           E+      V +     GY  + +  R       H  +G  GHVDHGK+TL   +  G
Sbjct: 84  EVGASIYIVRVHEGTDGYVAEVLVRRKTEEAPEHVLVGVAGHVDHGKSTLVGVLVTG 140

Length = 527

>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 15/19 (78%), Positives = 15/19 (78%)

Query: 97  IGTIGHVDHGKTTLTAAIT 115
           I T GHVDHGKTTL  AIT
Sbjct: 3   IATAGHVDHGKTTLLQAIT 21

Length = 614

>gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 12/54 (22%)

Query: 62  DKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
            K +++KL    P + SR+               NIGTIGHV HGK+T+  A++
Sbjct: 14  SKLDLDKLTPLTPEVISRQAT------------INIGTIGHVAHGKSTVVKALS 55

Length = 460

>gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 96  NIGTIGHVDHGKTTLT 111
           NI  I HVDHGKTTL+
Sbjct: 2   NICIIAHVDHGKTTLS 17

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218

>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 96  NIGTIGHVDHGKTTLTAAI 114
           NIG + H+D GKTTLT  I
Sbjct: 12  NIGIVAHIDAGKTTLTERI 30

Length = 697

>gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 12/16 (75%), Positives = 14/16 (87%)

Query: 96  NIGTIGHVDHGKTTLT 111
           NIG I H+DHGKTTL+
Sbjct: 22  NIGIIAHIDHGKTTLS 37

Length = 731

>gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 96  NIGTIGHVDHGKTTLTAAIT 115
           N+G +GHVD GKT+L  A++
Sbjct: 2   NVGLLGHVDSGKTSLAKALS 21

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192

>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 30/120 (25%)

Query: 91  DKPHCNIGTIGHVDHGKTTL-------TAAITKGLMEGM------LGSYTYELIQSIAKF 137
           +KPH N+  IGHVD GK+TL          I K  ME +      LG  +++       +
Sbjct: 4   EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKF-----AW 58

Query: 138 LLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGI 197
           +LD      + G+      S      TD+          F +   PGH+   V  +I G 
Sbjct: 59  VLDKTKEERERGVTIDVAHSKF---ETDK--------YNFTIIDAPGHR-DFVKNMITGA 106

Length = 428

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG3984|consensus	286		100.0
TIGR01698	237	PUNP purine nucleotide phosphorylase. methylthioad	100.0
TIGR01699	248	XAPA xanthosine phosphorylase. (TIGR01698, TIGR017	100.0
PRK08202	272	purine nucleoside phosphorylase; Provisional	100.0
COG0005	262	Pnp Purine nucleoside phosphorylase [Nucleotide tr	100.0
TIGR01700	249	PNPH purine nucleoside phosphorylase I, inosine an	100.0
PRK08931	289	5'-methylthioadenosine phosphorylase; Provisional	100.0
PRK07823	264	5'-methylthioadenosine phosphorylase; Validated	100.0
PRK07432	290	5'-methylthioadenosine phosphorylase; Provisional	100.0
PRK08564	267	5'-methylthioadenosine phosphorylase II; Reviewed	100.0
PRK09136	245	5'-methylthioadenosine phosphorylase; Validated	100.0
TIGR01697	248	PNPH-PUNA-XAPA inosine guanosine and xanthosine ph	100.0
PRK08666	261	5'-methylthioadenosine phosphorylase; Validated	100.0
KOG3985|consensus	283		100.0
TIGR01694	241	MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase	100.0
KOG0460|consensus	449		99.93
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.91
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.9
PF01048	234	PNP_UDP_1: Phosphorylase superfamily; InterPro: IP	99.85
KOG0460|consensus	449		99.84
PRK06714	236	S-adenosylhomocysteine nucleosidase; Validated	99.83
PRK05584	230	5'-methylthioadenosine/S-adenosylhomocysteine nucl	99.82
PRK14697	233	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.81
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.8
TIGR01704	228	MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylho	99.79
KOG0458|consensus	603		99.79
TIGR03468	212	HpnG hopanoid-associated phosphorylase. The sequen	99.77
PRK07164	218	5'-methylthioadenosine/S-adenosylhomocysteine nucl	99.73
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.73
COG0775	234	Pfs Nucleoside phosphorylase [Nucleotide transport	99.71
PLN02584	249	5'-methylthioadenosine nucleosidase	99.71
PRK13374	233	purine nucleoside phosphorylase; Provisional	99.7
PLN00043	447	elongation factor 1-alpha; Provisional	99.7
TIGR00107	232	deoD purine-nucleoside phosphorylase, family 1 (de	99.68
PRK05819	235	deoD purine nucleoside phosphorylase; Reviewed	99.67
COG0813	236	DeoD Purine-nucleoside phosphorylase [Nucleotide t	99.67
TIGR01718	245	Uridine-psphlse uridine phosphorylase. Sequences f	99.65
PRK07115	258	AMP nucleosidase; Provisional	99.65
PTZ00141	446	elongation factor 1- alpha; Provisional	99.64
TIGR03664	222	fut_nucase futalosine nucleosidase. This enzyme ca	99.63
PRK07077	238	hypothetical protein; Provisional	99.61
PRK11178	251	uridine phosphorylase; Provisional	99.6
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.6
TIGR01705	212	MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylh	99.59
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.59
PRK08236	212	hypothetical protein; Provisional	99.59
TIGR01721	266	AMN-like AMP nucleosidase, putative. The sequences	99.58
PRK06026	212	5'-methylthioadenosine/S-adenosylhomocysteine nucl	99.57
PLN03127	447	Elongation factor Tu; Provisional	99.57
KOG0459|consensus	501		99.56
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.54
TIGR01719	287	euk_UDPppase uridine phosphorylase. This model rep	99.54
KOG0462|consensus	650		99.53
PRK12736	394	elongation factor Tu; Reviewed	99.52
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.52
PRK12735	396	elongation factor Tu; Reviewed	99.52
PRK08292	489	AMP nucleosidase; Provisional	99.51
PLN03126	478	Elongation factor Tu; Provisional	99.5
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.5
PRK12317	425	elongation factor 1-alpha; Reviewed	99.49
TIGR01717	477	AMP-nucleosdse AMP nucleosidase. This model repres	99.48
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.48
PRK00049	396	elongation factor Tu; Reviewed	99.48
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.46
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.46
CHL00071	409	tufA elongation factor Tu	99.45
KOG0052|consensus	391		99.41
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.4
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.4
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.39
KOG0461|consensus	522		99.37
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.35
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.34
KOG0466|consensus	466		99.34
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.32
COG2820	248	Udp Uridine phosphorylase [Nucleotide transport an	99.3
PRK05634	185	nucleosidase; Provisional	99.26
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.26
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.25
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.12
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.11
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.1
PRK07560	731	elongation factor EF-2; Reviewed	99.1
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.1
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.09
PTZ00416	836	elongation factor 2; Provisional	99.06
KOG0465|consensus	721		99.03
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.02
PRK05433	600	GTP-binding protein LepA; Provisional	99.01
PRK00007	693	elongation factor G; Reviewed	99.0
PRK10218	607	GTP-binding protein; Provisional	98.99
PRK12739	691	elongation factor G; Reviewed	98.98
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.96
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.88
KOG0469|consensus	842		98.87
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.85
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.83
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.83
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.79
KOG0464|consensus	753		98.79
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.74
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.72
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.71
KOG0467|consensus	887		98.62
PRK13351	687	elongation factor G; Reviewed	98.56
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.55
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.4
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.4
KOG1145|consensus	683		98.37
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.33
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.33
PRK12740	668	elongation factor G; Reviewed	98.33
PRK05306	787	infB translation initiation factor IF-2; Validated	98.27
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.21
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.11
CHL00189	742	infB translation initiation factor 2; Provisional	98.1
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.09
PRK04004	586	translation initiation factor IF-2; Validated	97.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.75
KOG0468|consensus	971		97.65
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.55
cd00881	189	GTP_translation_factor GTP translation factor fami	97.19
PRK00093	435	GTP-binding protein Der; Reviewed	96.99
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	96.89
PLN03127	447	Elongation factor Tu; Provisional	96.73
KOG1144|consensus	1064		96.65
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.6
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.58
PRK12736	394	elongation factor Tu; Reviewed	96.52
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.49
PLN03126	478	Elongation factor Tu; Provisional	96.4
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	96.25
TIGR00485	394	EF-Tu translation elongation factor TU. This align	96.18
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.06
COG1159	298	Era GTPase [General function prediction only]	95.99
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	95.97
PRK12735	396	elongation factor Tu; Reviewed	95.89
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	95.8
PRK00049	396	elongation factor Tu; Reviewed	95.66
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	95.6
CHL00071	409	tufA elongation factor Tu	95.4
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	94.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	94.73
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	94.71
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	94.53
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	94.51
cd04105	203	SR_beta Signal recognition particle receptor, beta	94.46
KOG0463|consensus	641		93.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	93.61
PRK00093	435	GTP-binding protein Der; Reviewed	93.61
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	93.58
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	93.54
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	93.36
PRK14845	1049	translation initiation factor IF-2; Provisional	93.32
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	93.23
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.11
PRK04213	201	GTP-binding protein; Provisional	92.95
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	92.65
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	92.46
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	92.4
PRK03003	472	GTP-binding protein Der; Reviewed	92.28
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	92.14
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	92.06
KOG1143|consensus	591		91.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	91.82
COG2229	187	Predicted GTPase [General function prediction only	91.76
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	91.73
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	91.56
COG1084	346	Predicted GTPase [General function prediction only	91.43
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	91.4
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	90.83
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	90.62
PRK13948	182	shikimate kinase; Provisional	90.41
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	90.3
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	90.12
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	90.09
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	90.03
PRK00625	173	shikimate kinase; Provisional	90.0
PRK15467	158	ethanolamine utilization protein EutP; Provisional	89.97
PRK05057	172	aroK shikimate kinase I; Reviewed	89.91
TIGR00235	207	udk uridine kinase. Model contains a number of lon	89.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	89.57
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	89.54
PRK05480	209	uridine/cytidine kinase; Provisional	89.41
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	89.29
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	89.22
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	89.17
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	88.99
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	88.74
COG1160	444	Predicted GTPases [General function prediction onl	88.72
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	88.59
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	88.58
PRK06696	223	uridine kinase; Validated	88.56
PRK13949	169	shikimate kinase; Provisional	88.49
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	88.27
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	88.06
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	88.02
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	88.01
PRK08118	167	topology modulation protein; Reviewed	87.95
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	87.95
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	87.93
PRK13947	171	shikimate kinase; Provisional	87.8
PRK08099	399	bifunctional DNA-binding transcriptional repressor	87.71
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	87.71
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	87.64
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	87.59
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	87.57
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	87.53
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	87.45
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	87.44
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	87.4
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	87.33
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	87.32
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	87.3
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	87.19
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	87.16
PF00005	137	ABC_tran: ABC transporter This structure is on hol	87.11
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	86.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	86.82
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	86.77
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	86.77
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	86.75
PRK06217	183	hypothetical protein; Validated	86.65
PRK03839	180	putative kinase; Provisional	86.59
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	86.52
KOG1532|consensus	366		86.51
PLN00043	447	elongation factor 1-alpha; Provisional	86.25
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	86.23
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	86.22
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	86.21
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	86.18
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	86.15
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	86.14
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	86.12
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	85.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	85.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	85.9
PRK08233	182	hypothetical protein; Provisional	85.87
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	85.7
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	85.69
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	85.67
COG1363	355	FrvX Cellulase M and related proteins [Carbohydrat	85.46
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	85.44
KOG1423|consensus	379		85.42
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	85.37
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	85.36
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	85.32
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	85.3
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	85.29
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	85.24
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	85.24
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	85.23
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	85.19
KOG1489|consensus	366		84.89
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	84.85
PRK05541	176	adenylylsulfate kinase; Provisional	84.84
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	84.77
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	84.72
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	84.51
cd03116	159	MobB Molybdenum is an essential trace element in t	84.48
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	84.43
KOG0090|consensus	238		84.39
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	84.38
PRK07667	193	uridine kinase; Provisional	84.34
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	84.32
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	84.31
PLN02348	395	phosphoribulokinase	84.3
PRK07261	171	topology modulation protein; Provisional	84.28
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	84.22
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	84.2
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	84.19
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	84.15
PRK05439	311	pantothenate kinase; Provisional	84.14
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	84.13
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	84.12
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	84.1
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	84.07
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	84.03
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	83.92
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	83.89
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	83.86
PLN02796	347	D-glycerate 3-kinase	83.86
PRK00131	175	aroK shikimate kinase; Reviewed	83.85
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	83.84
KOG1424|consensus	562		83.7
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	83.7
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	83.68
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	83.64
cd03215	182	ABC_Carb_Monos_II This family represents domain II	83.63
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	83.59
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	83.51
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	83.5
PRK13833	323	conjugal transfer protein TrbB; Provisional	83.48
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	83.47
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	83.43
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	83.38
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	83.35
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	83.3
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	83.28
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	83.28
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	83.26
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	83.17
PRK14532	188	adenylate kinase; Provisional	83.1
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	83.08
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	83.05
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	82.98
PRK13537	306	nodulation ABC transporter NodI; Provisional	82.94
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	82.92
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	82.85
PRK00089	292	era GTPase Era; Reviewed	82.84
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	82.82
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	82.82
PF09439	181	SRPRB: Signal recognition particle receptor beta s	82.77
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	82.74
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	82.71
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	82.7
COG1160	444	Predicted GTPases [General function prediction onl	82.69
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	82.66
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	82.66
PRK13536	340	nodulation factor exporter subunit NodI; Provision	82.65
COG4559	259	ABC-type hemin transport system, ATPase component	82.64
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	82.63
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	82.63
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	82.58
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	82.58
PRK10908	222	cell division protein FtsE; Provisional	82.44
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	82.44
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	82.41
PRK13946	184	shikimate kinase; Provisional	82.41
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	82.37
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	82.36
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	82.35
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	82.33
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	82.26
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	82.24
PTZ00141	446	elongation factor 1- alpha; Provisional	82.21
PLN03046	460	D-glycerate 3-kinase; Provisional	82.2
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	82.19
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	82.18
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	82.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	81.98
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	81.96
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	81.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	81.95
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	81.93
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	81.9
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	81.9
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	81.89
cd03234	226	ABCG_White The White subfamily represents ABC tran	81.89
PLN03108	210	Rab family protein; Provisional	81.89
PRK07429	327	phosphoribulokinase; Provisional	81.86
smart00382	148	AAA ATPases associated with a variety of cellular	81.77
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	81.76
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	81.73
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	81.72
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	81.69
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	81.69
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	81.67
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	81.65
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	81.64
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	81.63
PRK15494	339	era GTPase Era; Provisional	81.62
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	81.62
smart00178	184	SAR Sar1p-like members of the Ras-family of small	81.58
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	81.54
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	81.52
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	81.51
PLN03118	211	Rab family protein; Provisional	81.49
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	81.49
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	81.45
cd03269	210	ABC_putative_ATPase This subfamily is involved in	81.43
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	81.37
PRK13851	344	type IV secretion system protein VirB11; Provision	81.36
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	81.36
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	81.36
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	81.32
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	81.32
cd03246	173	ABCC_Protease_Secretion This family represents the	81.29
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	81.18
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	81.09
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	81.09
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	81.09
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	80.98
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	80.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	80.85
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	80.79
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	80.79
PRK09563	287	rbgA GTPase YlqF; Reviewed	80.78
PRK03695	248	vitamin B12-transporter ATPase; Provisional	80.76
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	80.73
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	80.72
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	80.71
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	80.68
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	80.66
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	80.65
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	80.64
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	80.63
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	80.6
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	80.6
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	80.56
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	80.56
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	80.55
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	80.52
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	80.49
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	80.42
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	80.39
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	80.39
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	80.36
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	80.34
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	80.3
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	80.3
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	80.27
PRK12317	425	elongation factor 1-alpha; Reviewed	80.27
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	80.26
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	80.25
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	80.15
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	80.13
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	80.13
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	80.12
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	80.11
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	80.11
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	80.03
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	80.02

>KOG3984|consensus

Probab=100.00  E-value=1.7e-66  Score=475.25  Aligned_cols=281  Identities=54%  Similarity=0.979  Sum_probs=270.0

Q ss_pred             chhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec
Q psy9643         124 GSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ  203 (412)
Q Consensus       124 ~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q  203 (412)
                      +.+.|+++.+.++||......+|++||||||||+++++.++++..+||+++|+||.+++|||++++++|.++|++++++|
T Consensus         3 ~p~~ye~~~~~a~~i~~~~~~rpk~gIICGSgLg~l~~~l~~p~i~pYedIP~Fp~s~vpghag~lvfG~l~G~pvv~mq   82 (286)
T KOG3984|consen    3 DPYPYEDVEEMAEYIVEQSHIRPKVGIICGSGLGGLADKLSQPVIVPYEDIPNFPVSTVPGHAGRLVFGTLGGAPVVAMQ   82 (286)
T ss_pred             CCchHHHHHHHHHHHHhccccCCceEEEecCCcchhhhhccCCEEecHhhCCCCCcccCCCCcccEEEEecCCceEEEEc
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCC
Q psy9643         204 GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPM  283 (412)
Q Consensus       204 gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~  283 (412)
                      ||+|.||||+..++++|+++++.+||+.+++||++|++|+.++.||+|++.||||+.++.|+||+.|+|+.+||.+|+.+
T Consensus        83 grfh~yegy~L~~~tfpvrVm~l~Gv~~lvvTnaAggin~~f~vgdiMli~DHin~~G~agq~pl~Gpnd~rfG~rf~a~  162 (286)
T KOG3984|consen   83 GRFHSYEGYPLAKCTFPVRVMQLLGVRILVVTNAAGGINPKFAVGDIMLIKDHINLPGLAGQNPLRGPNDPRFGVRFPAL  162 (286)
T ss_pred             ccccccCCccHHHhhhhHHHHHHcCceEEEEeccccCcCcccccccEEEEecccCCccccCCCCCCCCCcccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeee
Q psy9643         284 NKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLIT  363 (412)
Q Consensus       284 ~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VS  363 (412)
                      +++||.+||+++.++++++|+...+|+|+|+|+.||+|||+||.|++|.+|+|+||||++||+++||++|++++++++||
T Consensus       163 sdAYd~~lr~~a~~~~K~m~iqr~lheGvy~~vgGP~~eT~AE~rmlr~mg~dAVGMStvpEVivArHcG~kVlafslIT  242 (286)
T KOG3984|consen  163 SDAYDKDLRQKALEIGKAMGIQRTLHEGVYACVGGPIFETRAESRMLRTMGADAVGMSTVPEVIVARHCGLKVLAFSLIT  242 (286)
T ss_pred             hhhhhHHHHHHHHHHHHHhcccchhhcceEEEecCCccccHHHHHHHHHhCcccccccccchheeeccCCcEEEEEEEEe
Confidence            99999999999999999999987899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643         364 NKCVTDYDDH--AEANHEEVIQAGKLRGPMIKSMVTRIVSYIG  404 (412)
Q Consensus       364 d~a~~~~~~~--~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~  404 (412)
                      |.+..++...  .+.+|+|+++..+++++++.+++..++..|+
T Consensus       243 n~~~~d~s~sa~~ev~h~evl~v~~~a~~~~~~lVs~lm~~i~  285 (286)
T KOG3984|consen  243 NKAVVDESASADVEVDHDEVLEVGKQAAQACSDLVSRLMYEIH  285 (286)
T ss_pred             ccccccCchhccccCCHHHHHhhhHHHHHHHHHHHHHHHhhcc
Confidence            9997543333  5789999999999999999999999998775

>TIGR01698 PUNP purine nucleotide phosphorylase

Probab=100.00  E-value=1.3e-59  Score=444.15  Aligned_cols=237  Identities=38%  Similarity=0.660  Sum_probs=224.7

Q ss_pred             ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643         147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL  226 (412)
Q Consensus       147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~  226 (412)
                      ++|||+||||+++++.+++...++|+++|+||.++++||+++++.|++.|++|++++||+|.||||++..+.+|+|+++.
T Consensus         1 ~i~iI~GSGl~~~~~~~~~~~~ipY~~ip~fp~~tv~gH~g~l~~G~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~   80 (237)
T TIGR01698         1 DMAIVLGSGWGGAVEALGEPVELPYAEIPGFPAPTVSGHAGELIRVRIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARA   80 (237)
T ss_pred             CEEEEEeCCHHHHHHhhcCceEeecccCCCCCCCcccCccceEEEEEECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643         227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS  306 (412)
Q Consensus       227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~  306 (412)
                      +||++||.+|++|++|++++|||+|+++||||+++   .+|+.       |++|++++++||++||    +++++.++. 
T Consensus        81 lGv~~ii~tna~Gsl~~~~~pGdlv~~~D~I~~t~---~~pl~-------g~~~~d~~~~yd~~Lr----~~a~~~~~~-  145 (237)
T TIGR01698        81 TGAETLILTNAAGGLRQDWGPGTPVLISDHINLTA---RSPLI-------GPRFVDLTDAYSPRLR----ELAERVDPP-  145 (237)
T ss_pred             cCCCEEEEEcccccCCCCCCCCCEEeechhcccCC---CCCCC-------CCccCCCCcccCHHHH----HHHHHcCCC-
Confidence            99999999999999999999999999999999987   67874       4689999999999999    556778887 


Q ss_pred             ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643         307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK  386 (412)
Q Consensus       307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~  386 (412)
                       +++|||+++.||+|||+||+||+|++|||+||||++||+++||++||||++|++|||+|+|  ..++++||+|+++.++
T Consensus       146 -~~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMS~vpEvilAre~g~~~a~is~VtN~a~g--~~~~~~th~ev~~~~~  222 (237)
T TIGR01698       146 -LAEGVYAWFPGPHYETPAEIRMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAG--ITGTPLSHAEVKAAGA  222 (237)
T ss_pred             -ccCEEEEEecCCCcCCHHHHHHHHHcCCCEeccCchHHHHHHHHCCCcEEEEEEEeccccC--CCCCCCCHHHHHHHHH
Confidence             8899999999999999999999999999999999999999999999999999999999987  4567899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9643         387 LRGPMIKSMVTRIVS  401 (412)
Q Consensus       387 ~~~~~~~~ll~~~i~  401 (412)
                      +++.++.+++.++|+
T Consensus       223 ~~~~~~~~ll~~~i~  237 (237)
T TIGR01698       223 AAGTRLAALLADIIK  237 (237)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998864

methylthioadenosine.

>TIGR01699 XAPA xanthosine phosphorylase

Probab=100.00  E-value=1.1e-58  Score=441.99  Aligned_cols=248  Identities=41%  Similarity=0.727  Sum_probs=238.9

Q ss_pred             ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643         147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL  226 (412)
Q Consensus       147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~  226 (412)
                      ++|||+||||+++++.++++..++|+++|+||.++++||+++++.|+++|++|++++||.|.|||+++..+.+|+|+++.
T Consensus         1 ~~~ii~Gsgl~~~~~~~~~~~~i~y~~ip~~p~~~v~gh~g~l~~G~l~g~~Vv~~~Gr~h~y~g~~~~~~~~~i~~l~~   80 (248)
T TIGR01699         1 RVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKL   80 (248)
T ss_pred             CEEEEeeCcHHHHHHhccCCEEEECCCCCCCCCCcccCCcceEEEEEECCEEEEEEeCCCcccCCcchhhhcchHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643         227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS  306 (412)
Q Consensus       227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~  306 (412)
                      +||+.||++|++|++|+++++||+|+++||||+++   .+|+.+.+.+.+|++|.+|+++||++||+.+.+++++++++ 
T Consensus        81 lGv~~iI~t~aaG~l~~~l~~Gdlvi~~d~i~~t~---~~p~~~~~~~~~g~~~~~~~~~yd~~Lr~~~~~~a~~~~~~-  156 (248)
T TIGR01699        81 LGCELLFCTNAAGSLRPEVGAGSLVALKDHINTMP---GTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFP-  156 (248)
T ss_pred             cCCCEEEEecceeccCCCCCCCCEECHHHHhhcCC---CCCccCCCcccCCCCCCCCCCccCHHHHHHHHHHHHHcCCc-
Confidence            99999999999999999999999999999999987   78998888888899999999999999999999999999998 


Q ss_pred             ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643         307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK  386 (412)
Q Consensus       307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~  386 (412)
                       +++|+|+++.||+|||+||++++++||||+||||++||+++|+++||||++||+|||++++  ....+++|+||++.++
T Consensus       157 -~~~Gvy~~~~GP~FeT~AE~r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g--~~~~~lt~~ev~~~~~  233 (248)
T TIGR01699       157 -LTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEG--LSDVKLSHAQTLAAAE  233 (248)
T ss_pred             -eeeEEEEEeeCCCcCCHHHHHHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcC--cCCCCCCHHHHHHHHH
Confidence             8899999999999999999999999999999999999999999999999999999999986  4678899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9643         387 LRGPMIKSMVTRIVS  401 (412)
Q Consensus       387 ~~~~~~~~ll~~~i~  401 (412)
                      ++.+++.++|.++|+
T Consensus       234 ~~~~~~~~ll~~~~~  248 (248)
T TIGR01699       234 LSKQNFINLICGFLR  248 (248)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998874

(TIGR01698, TIGR01700).

>PRK08202 purine nucleoside phosphorylase; Provisional

Probab=100.00  E-value=3.8e-58  Score=445.86  Aligned_cols=269  Identities=49%  Similarity=0.883  Sum_probs=255.2

Q ss_pred             HHHHHHHHHHHhhhcC-CCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643         128 YELIQSIAKFLLDSIS-IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF  206 (412)
Q Consensus       128 ~~~~~~~~~~i~~~~~-~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~  206 (412)
                      +++++++++||+++++ .++++|||+||||+++++.+++..+++|+++|+|+.++++||+++++.|+++|++|++++||.
T Consensus         3 ~~~~~~~~~~i~~~~~~~~~~i~iI~GsGl~~~~~~~~~~~~~~y~~ip~f~~~~v~gh~~~~~~G~l~g~~Vv~~~g~~   82 (272)
T PRK08202          3 LEKIEEAAAFIREKTGAFKPEIGLILGSGLGALADEIENAVVIPYADIPGFPVSTVEGHAGELVLGRLGGKPVLAMQGRF   82 (272)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCEEEEeCCchhHHHHHhcCcEEEecccCCCCCCCCCcCCCceEEEEEECCEEEEEEccCC
Confidence            5778899999999998 899999999999999988889999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      |.|||+.++.+++++|+++.+|++.||++|++|++++++++||+|+++|++++++   .+|+.|.+...++++|++++++
T Consensus        83 H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL~~~l~~GDiVi~~d~i~~~~---~~~~~g~~~~~~~~~~~~~~~~  159 (272)
T PRK08202         83 HYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLNPDFGPGDLMLISDHINLTG---RNPLIGPNDDEFGPRFPDMSDA  159 (272)
T ss_pred             cccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEchhhhhCC---CCcccCCCcccCCCccCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999987   6787777666678889999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      ||++||+.+.+++++.|++  ++.|+|++++||+|+|+||++++++||||+||||++||+++|+++|+||++|++|||++
T Consensus       160 ~d~~L~~~l~~~a~~~~~~--~~~G~y~~~~Gp~feT~aE~~~~~~~Gad~VgMe~~~ea~lA~~~gi~~~~i~~Vsd~a  237 (272)
T PRK08202        160 YDPELRALAKKVAKELGIP--LQEGVYVGVSGPSYETPAEIRMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLA  237 (272)
T ss_pred             cCHHHHHHHHHHHHHcCCc--eeeEEEEEeeCCCcCCHHHHHHHHHcCCcEEecChHHHHHHHHHCCCcEEEEEEEeccC
Confidence            9999999999999999998  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ++  .++++++|+++++.+++++.++.+++.++|+++
T Consensus       238 ~~--~~~~~~~~~ev~~~~~~~~~~~~~l~~~~i~~~  272 (272)
T PRK08202        238 AG--ISDEPLSHEEVLEVAERAAPKFGRLVKAILARL  272 (272)
T ss_pred             cC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            75  456789999999999999999999999998764

>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]

Probab=100.00  E-value=7.8e-56  Score=419.22  Aligned_cols=258  Identities=38%  Similarity=0.615  Sum_probs=231.1

Q ss_pred             HHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCe-EEEEecceeeeecC
Q psy9643         133 SIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGI-PIMCMQGRFHYYEG  211 (412)
Q Consensus       133 ~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~-~vv~~qgr~H~yeg  211 (412)
                      ++..++..++...+++|||+||||+++++..+  ...+|.++|.|+.+++|||.+++.  .++++ .++..|||.|.|||
T Consensus         4 ~~~~~~~~~~~~~~~igiIgGSGl~~l~~~~~--~~~~~~~~tpfg~~s~~~~~g~~~--~~g~~v~~l~rhGr~H~y~p   79 (262)
T COG0005           4 EAADFIKERTDEMPMIGIIGGSGLYDLADLLE--VREPYSDITPFGVPSVPGHAGELV--TLGGKVAFLARHGRGHSYPP   79 (262)
T ss_pred             chhhhhhcccCCCccEEEEecccccccccccc--cceecccCCCCCCCCCceEEEEEe--ecCceEEEEecCCCCCCCCC
Confidence            45667777777789999999999999976655  567889999999999999998777  66677 77888999999877


Q ss_pred             CCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHH
Q psy9643         212 YPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQL  291 (412)
Q Consensus       212 ~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~L  291 (412)
                      |....... +|+++.+||++||++|++||||++++|||+|+++||||++.  +.+||.|.+.   +++|+++++|||++|
T Consensus        80 h~~~~ran-i~alk~lGV~~vi~tnAvGsl~~~~~pGd~vv~~d~Id~t~--r~~~~~~~~~---~~~~~d~s~~y~~~l  153 (262)
T COG0005          80 HSVNYRAN-IRALKALGVERVILTNAVGSLREEYKPGDLVVPDDHIDFTK--RQNPFYGGND---GVRFVDMSDPYDPEL  153 (262)
T ss_pred             CCchHHHH-HHHHHHcCCeEEEEecccccccccCCCCCEEeehhheeccC--CCCcccCCCC---ceeeCCCCCcCCHHH
Confidence            66665555 99999999999999999999999999999999999999996  4788877654   678999999999999


Q ss_pred             HHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q psy9643         292 RAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD  371 (412)
Q Consensus       292 r~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~  371 (412)
                      |+.+.+++++..+....++|||+|++||+|||+||++|+|.+|||+||||++||+++|||+|+||++|++|||+++|  .
T Consensus       154 r~~l~~~a~~~~~~~~~~~GvYv~~eGP~feT~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya~is~vTn~aag--~  231 (262)
T COG0005         154 REALAEAAKELRLGHPLQEGVYVCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAAG--I  231 (262)
T ss_pred             HHHHHHHHhhcccCcccCceEEEEecCCCcCCHHHHHHHHHhCCCcccCcCCcHHHHhHhhCCcEEEEEEeehhhcc--C
Confidence            99999999965554226689999999999999999999999999999999999999999999999999999999998  3


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         372 DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       372 ~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                       ++++||+||++.++++..++.+++.++|+++
T Consensus       232 -~~~lt~eEV~~~~~~~~~~~~~l~~~~i~~~  262 (262)
T COG0005         232 -GQPLTHEEVLEVAKENAEKIAKLLAAAIAKL  262 (262)
T ss_pred             -CCCcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             8899999999999999999999999999864

>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific

Probab=100.00  E-value=2.3e-52  Score=400.71  Aligned_cols=247  Identities=53%  Similarity=0.926  Sum_probs=232.2

Q ss_pred             ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643         147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL  226 (412)
Q Consensus       147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~  226 (412)
                      ++|||+||||+++++.+++..+++|+++|+||..+++||+++++.|+++|++|+++++|.|.|||+.++.++|++|+++.
T Consensus         1 ~~~iv~gsgl~~~~~~~~~~~~~~~~~ip~~~~~~~~g~~~~~~~G~i~g~~Vv~~~~~iH~~~Gk~~a~i~~~~~ll~~   80 (249)
T TIGR01700         1 DIAIILGSGLGPLAEKVEDATIIDYSEIPHFPQSTVVGHAGNLVFGILGGKPVVAMQGRFHMYEGYDMAKVTFPVRVMKL   80 (249)
T ss_pred             CEEEEecCcHHHHHHhccCcEEEEhhhcCCCCCCCCCCCCccEEEEEECCEEEEEEcCCccccCCcCHHHccHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643         227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS  306 (412)
Q Consensus       227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~  306 (412)
                      +||++||++|++|++++++++||+|+++|+++++.   .+|+.|.+.+.++..|+++..+||++|++.+.+++++++++ 
T Consensus        81 ~gv~~II~~gsaGsl~~~l~~GDiVi~~d~i~~~~---~~~l~g~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~-  156 (249)
T TIGR01700        81 LGVETLVVTNAAGGINPEFKVGDLMLIRDHINLPG---FNPLRGPNEERFGVRFPDMSDAYDRDLRQKAHSIAKQLNIP-  156 (249)
T ss_pred             cCCCEEEEecccccCCCCCCCCCEEEEhhHhhCCC---CCCccCCCCcCCCCeeCCCCcccCHHHHHHHHHHHHHcCCc-
Confidence            99999999999999999999999999999999986   57887766666777788889999999999999999999998 


Q ss_pred             ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC-HHHHHHHH
Q psy9643         307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN-HEEVIQAG  385 (412)
Q Consensus       307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s-~~ev~~~~  385 (412)
                       ++.|+|++++||+|+|++|.+++++||||+||||++||+++|+++|+||++|++|||+++|  ..+++++ ++++.+.+
T Consensus       157 -~~~G~y~~~sGp~F~t~aE~~~~~~~gad~V~Me~aaea~~A~~~gv~~~~i~~vsd~a~~--~~~~~~~~~~~v~~~~  233 (249)
T TIGR01700       157 -LQEGVYVMLGGPSYETPAEVRLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAG--ILDYELSVHEEVMEAA  233 (249)
T ss_pred             -cceEEEEEeeCCCcCCHHHHHHHHHcCCCEEecchHHHHHHHHHcCCcEEEEEEEeecccc--cCcCCCCHHHHHHHHH
Confidence             7899999999999999999999999999999999999999999999999999999999976  3457889 88899999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy9643         386 KLRGPMIKSMVTRIV  400 (412)
Q Consensus       386 ~~~~~~~~~ll~~~i  400 (412)
                      +++++.+.++|.++|
T Consensus       234 ~~~~~~~~~ll~~~i  248 (249)
T TIGR01700       234 KQAAEKLEKFVSLLI  248 (249)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999988888888775

Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.

>PRK08931 5'-methylthioadenosine phosphorylase; Provisional

Probab=100.00  E-value=2.4e-52  Score=404.80  Aligned_cols=239  Identities=24%  Similarity=0.413  Sum_probs=215.5

Q ss_pred             CCceeEeeCcCccc---ccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH
Q psy9643         145 RPKIGIICGSGLST---IADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM  219 (412)
Q Consensus       145 e~~~GIi~GsGl~~---~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~  219 (412)
                      .+++|||+||||++   +++..++..++||.+ |          +++++.|.++|++|+++  |||.|.|   +|+++||
T Consensus         3 ~p~igIIgGSGl~~~~~l~~~~~~~~~tpyg~-p----------sg~l~~G~l~G~~V~~l~RhGr~H~y---~p~~i~~   68 (289)
T PRK08931          3 KAVLGIIGGSGVYDIDGLEDARWERVESPWGE-P----------SDALLFGRLGGVPMVFLPRHGRGHRL---SPSDINY   68 (289)
T ss_pred             CceEEEEecCCcCCccccccceeeeeEcCCCC-C----------cCcEEEEEECCEEEEEEeCCCCCCcc---ChHHccc
Confidence            57899999999995   566667777888875 1          56899999999999999  5999996   9999999


Q ss_pred             --HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCC---CCCCCCcccccHHHHHH
Q psy9643         220 --PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFG---PRFPPMNKAYNKQLRAA  294 (412)
Q Consensus       220 --~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g---~~~~~~~~~~d~~Lr~~  294 (412)
                        |+|+++.+||++||.+|++|++|++++|||+|+++||||+++.+..+        .||   .+|++|+++||++||+.
T Consensus        69 rAni~alk~lGv~~ii~tnA~Gsln~~~~pGd~vi~~D~In~t~~~~~~--------~~g~~~~~f~~m~~~y~~~Lr~~  140 (289)
T PRK08931         69 RANIDALKRAGVTDIVSLSACGSFREELPPGTFVIVDQFIDRTFAREKS--------FFGTGCVAHVSMAHPVCPRLGDR  140 (289)
T ss_pred             HHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEeehhhhccCCCCCCC--------ccCCCcccCCCCCcccCHHHHHH
Confidence              99999999999999999999999999999999999999998743222        234   36999999999999999


Q ss_pred             HHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCC
Q psy9643         295 TLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHA  374 (412)
Q Consensus       295 ~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~  374 (412)
                      +.++++++|++ +++.|||+++.||+|||+||+||+++||||+||||++||+++|+|+||+|++|++|||+++|. ...+
T Consensus       141 l~~~a~~~~~~-~~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VTN~a~g~-~~~~  218 (289)
T PRK08931        141 LAAAARAEGIT-VHRGGTYLCMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVTDYDCWH-PDHD  218 (289)
T ss_pred             HHHHHHHcCCe-EecceEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEecccccc-cCCC
Confidence            99999999998 566889999999999999999999999999999999999999999999999999999999874 2456


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643         375 EANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ  407 (412)
Q Consensus       375 ~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~  407 (412)
                      +++|+||++.++++..++.+++.++|++++...
T Consensus       219 ~~t~eeV~~~~~~~~~~~~~ll~~~i~~l~~~~  251 (289)
T PRK08931        219 AVTVDAVIAVLLANADKARALVARLAPDLGAER  251 (289)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            899999999999999999999999999995544

>PRK07823 5'-methylthioadenosine phosphorylase; Validated

Probab=100.00  E-value=6.7e-52  Score=397.68  Aligned_cols=238  Identities=20%  Similarity=0.278  Sum_probs=213.5

Q ss_pred             CCCceeEeeCcCcccccc--cccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH
Q psy9643         144 IRPKIGIICGSGLSTIAD--SITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM  219 (412)
Q Consensus       144 ~e~~~GIi~GsGl~~~~~--~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~  219 (412)
                      ..+++|||+||||+++.+  ..+++.++||.+.           +++++.|++.|++|+++  |||.|.||||.+. +.+
T Consensus         4 ~~p~igII~GSGl~~l~~~~~~~~~~~tpyg~~-----------sg~l~~G~l~g~~v~~l~RhGr~H~ye~~~i~-~ra   71 (264)
T PRK07823          4 NGAMLGVIGGSGFYSFFGSDAREVNVDTPYGPP-----------SAPITIGEVGGRRVAFLPRHGRDHEFSPHTVP-YRA   71 (264)
T ss_pred             CCceEEEEeccccchhhcccceeeEEeccCCCC-----------CCCEEEEEECCEEEEEEeCCCCCCCcCCCCcc-chH
Confidence            368999999999999876  4466777888761           25799999999999999  9999999988766 666


Q ss_pred             HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643         220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA  299 (412)
Q Consensus       220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a  299 (412)
                      |+|+++.+||++||++|++|++|++++|||+|+++|+||+++   .+|+.+.   .+|.+|++|+++||+.||+.+.+++
T Consensus        72 ni~alk~lGv~~ii~tnA~Gsln~~~~pGdlvi~dd~id~t~---~~p~t~~---~~g~~f~~m~~~y~~~Lr~~l~~~a  145 (264)
T PRK07823         72 NMWALRALGVRRVFAPCAVGSLRPELGPGTVVVPDQLVDRTS---GRAQTYF---DSGGVHVSFADPYCPTLRAAALGLP  145 (264)
T ss_pred             HHHHHHHcCCCEEEEecccccCCCCCCCCCEEEcchhhhccC---CCCCCcc---CCCccCCCCCcccCHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999987   4554332   2478999999999999999999999


Q ss_pred             HHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHH
Q psy9643         300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE  379 (412)
Q Consensus       300 ~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~  379 (412)
                      +    .  +++|||+++.||+|||+||+||+|++|||+||||++||+++|+++||+|++|++|||+++|. .+.++++|+
T Consensus       146 ~----~--~~~GvY~~~~GP~fET~AEir~~r~~GaDvVGMS~vPEvilAre~gl~~~~is~VTN~a~g~-~~~~~~~~e  218 (264)
T PRK07823        146 G----V--VDGGTMVVVQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAGV-EAGEGVKAV  218 (264)
T ss_pred             h----h--cCCeEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHCCCceEEEEEEeccccCc-ccCCCCCHH
Confidence            7    3  88999999999999999999999999999999999999999999999999999999999874 245789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         380 EVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       380 ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      ||++.++++++++.+++.++|++++..
T Consensus       219 ev~~~~~~~~~~~~~ll~~~i~~~~~~  245 (264)
T PRK07823        219 DVFAEFGRNIERLKRLVRDAIAAVPAE  245 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999998654

>PRK07432 5'-methylthioadenosine phosphorylase; Provisional

Probab=100.00  E-value=4.8e-51  Score=395.51  Aligned_cols=244  Identities=24%  Similarity=0.323  Sum_probs=213.3

Q ss_pred             CCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCccccHH--
Q psy9643         145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAMP--  220 (412)
Q Consensus       145 e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~~--  220 (412)
                      .+++|||+||||++++ .+++..+.++++.++++       +++++.|.++|++|+++  |||.|.|   +|+++||+  
T Consensus         3 ~~~igIIgGSGl~~l~-~l~~~~~~~~~tp~G~p-------s~~l~~G~l~g~~v~~l~RhGr~H~y---~p~~i~~rAn   71 (290)
T PRK07432          3 QAKIGIIGGSGLYKME-ALKDVEEVQLETPFGSP-------SDALIVGTLDGTRVAFLARHGRNHTL---LPTELPFRAN   71 (290)
T ss_pred             CCcEEEEecCccCChh-hcCcceEEEeeCCCCCC-------CCCEEEEEECCEEEEEEECCCCCCcc---ChhhcCcHHH
Confidence            4689999999999976 45566666666555543       46899999999999999  9999996   89999996  


Q ss_pred             HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHH
Q psy9643         221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIAR  300 (412)
Q Consensus       221 i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~  300 (412)
                      +|+++.+||++||.+|++|++|++++|||+|+++||||+++   .+|+..... . ...|++++++||++||+.+.++++
T Consensus        72 i~alk~lGv~~ii~tna~Gsln~~~~pGdlvv~~D~Id~t~---~rp~t~~~~-~-~~~~~~~~~~y~~~Lr~~l~~~a~  146 (290)
T PRK07432         72 IYAMKQLGVEYLISASAVGSLKEEAKPLDMVVPDQFIDRTK---NRISTFFGE-G-IVAHIGFGDPICPALAGVLADAIA  146 (290)
T ss_pred             HHHHHHcCCCEEEEEeccccccCCCCCCCEEeecceecCCC---CCCCcccCC-C-cccCCcCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987   455432111 1 123689999999999999999999


Q ss_pred             HcCCC--cceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCH
Q psy9643         301 DLNMS--SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH  378 (412)
Q Consensus       301 ~~g~~--~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~  378 (412)
                      ++++.  .++++|||+++.||+|||+||+||+|+||||+||||++||+++|+|+||||++|++|||+|+|. ...+++||
T Consensus       147 ~~~~~~~~~~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMS~vPEvilAre~Gl~~a~ls~VTN~a~g~-~~~~~~s~  225 (290)
T PRK07432        147 SLNLPDVTLHRGGTYVCMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLALVTDYDCWH-PDHDSVTV  225 (290)
T ss_pred             HcCCCccceeCCeEEEEeeCCCCCcHHHHHHHHHcCCCEeccCchHHHHHHHhCCCcEEEEEEEeeccccc-CcCCCCCH
Confidence            98872  1345899999999999999999999999999999999999999999999999999999999874 23467899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643         379 EEVIQAGKLRGPMIKSMVTRIVSYIGE  405 (412)
Q Consensus       379 ~ev~~~~~~~~~~~~~ll~~~i~~l~~  405 (412)
                      +||++.++++++++.++|.++|+++..
T Consensus       226 eeV~~~~~~~~~~~~~ll~~~i~~l~~  252 (290)
T PRK07432        226 EMVIGNLHKNAVNAQKVIQETVRRLSA  252 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999855

>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed

Probab=100.00  E-value=7.1e-51  Score=392.46  Aligned_cols=242  Identities=26%  Similarity=0.383  Sum_probs=213.5

Q ss_pred             CCCceeEeeCcCcc---cccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEe--cceeeeecCCCCcccc
Q psy9643         144 IRPKIGIICGSGLS---TIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCA  218 (412)
Q Consensus       144 ~e~~~GIi~GsGl~---~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~  218 (412)
                      ..+++|||+||||+   .+++..++..++||.+           .+++++.|.++|++|+++  |||.|.|||+.+. ..
T Consensus         6 ~~~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~-----------p~~~l~~g~l~g~~v~~l~RhGr~H~y~~~~i~-~~   73 (267)
T PRK08564          6 EKASIGIIGGSGLYDPGIFENSKEVKVYTPYGE-----------PSDNIIIGEIEGVEVAFLPRHGRGHRIPPHKIN-YR   73 (267)
T ss_pred             CCceEEEEecCCCCCCcccccceeeeEEcCCCC-----------CccCEEEEEECCEEEEEEeCCCCCcccCCccCc-ch
Confidence            46899999999994   4566666777778774           146899999999999999  9999999877766 45


Q ss_pred             HHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643         219 MPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI  298 (412)
Q Consensus       219 ~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~  298 (412)
                      +|+|+++.+||++||.+|++|++|+++++||+|+++|||++++   .+|+.+.....  ..|++|+++||++||+.+.++
T Consensus        74 a~i~aLk~LGvk~iI~tnavGsl~~~~~pGDlVv~~D~I~~tg---~~p~t~~~g~~--~~~~~~~~~y~~~Lr~~l~~a  148 (267)
T PRK08564         74 ANIWALKELGVEWVIAVSAVGSLREDYKPGDFVIPDQFIDMTK---KREYTFYDGPV--VAHVSMADPFCPELRKIIIET  148 (267)
T ss_pred             HHHHHHHHCCCcEEEEeccccccCCCCCCCCEEeehhhhccCC---CCCcccCCCCc--cccCCCCcccCHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999988   45555432111  235889999999999999999


Q ss_pred             HHHcCCCcceeeceEEEEecCccCCHHHHHHHHHc-CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643         299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRIC-GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN  377 (412)
Q Consensus       299 a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~-Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s  377 (412)
                      +++.|++ ++++|||+++.||+|||+||+||+|++ |||+||||++||+++|||+||+|++|++|||+++|   .+.+++
T Consensus       149 A~~~g~~-~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~vpEvilAre~g~~~~~is~VtN~a~g---~~~~~t  224 (267)
T PRK08564        149 AKELGIR-THEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVNLACELGMCYATIAMVTDYDVW---AEKPVT  224 (267)
T ss_pred             HHHcCCc-eecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCccHHHHHHHHcCCceEEEEEEeccccC---CCCCCC
Confidence            9999998 444799999999999999999999996 99999999999999999999999999999999986   457899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         378 HEEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       378 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      |+|+++.+++++.++.+++.++|++++.+
T Consensus       225 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  253 (267)
T PRK08564        225 AEEVTRVMAENTEKAKKLLYEAIPRIPEE  253 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999998643

>PRK09136 5'-methylthioadenosine phosphorylase; Validated

Probab=100.00  E-value=3.5e-49  Score=376.73  Aligned_cols=235  Identities=26%  Similarity=0.386  Sum_probs=209.5

Q ss_pred             ceeEeeCcCcccccccc---cCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--
Q psy9643         147 KIGIICGSGLSTIADSI---TDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM--  219 (412)
Q Consensus       147 ~~GIi~GsGl~~~~~~~---~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~--  219 (412)
                      ++|||+||||+++++..   +...++||.+.           +++++.|+++|++|++++  |+.|.   |+|+++||  
T Consensus         1 ~igiI~Gsgl~~~~~~~~~~~~~~~tpyg~~-----------~~~l~~G~l~g~~Vv~l~RhG~~h~---~~~~~V~~~A   66 (245)
T PRK09136          1 MLAIIGGTGLTQLAGLDIVQRQVVRTPYGAP-----------SGPLTFGTLAGREVVFLARHGHGHT---IPPHKVNYRA   66 (245)
T ss_pred             CEEEEeccccchhhhccccceeEEEcCCCCC-----------cccEEEEEECCEEEEEEecCCCCCC---CChHHcCcHH
Confidence            48999999999987543   55666777652           458999999999999885  55554   59999998  


Q ss_pred             HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643         220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA  299 (412)
Q Consensus       220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a  299 (412)
                      ++|+++.+||+.||++|++|++|+++++||+|+++||||+++   .+|+.+.+...++.+|.++.++||++|++.+.+++
T Consensus        67 ~i~al~~lGv~~ii~t~aaG~l~~~l~~Gdlvi~~d~i~~~~---~~p~t~~~~~~~~~~~~~~~~~~d~~L~~~~~~~a  143 (245)
T PRK09136         67 NIWALKQAGATRVLAVNTVGGIHADMGPGTLVVPDQIIDYTW---GRKSTFFEGDGEEVTHIDFTHPYSPMLRQRLLAAA  143 (245)
T ss_pred             HHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEHHHhhccC---CCCCCCCCCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999987   56666655556778899999999999999999999


Q ss_pred             HHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCC-CCH
Q psy9643         300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE-ANH  378 (412)
Q Consensus       300 ~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~-~s~  378 (412)
                      ++.|++ ++++|+|++++||+|+|+||+++++++|||+||||++||+++|+++|+||++|++|||+|+|.  .+++ ++|
T Consensus       144 ~~~~~~-~~~~Gvy~~~~GP~feT~AE~r~lr~~Gad~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~--~~~~~~~~  220 (245)
T PRK09136        144 RAAGVS-LVDGGVYAATQGPRLETAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVANWAAGR--GDSAEITM  220 (245)
T ss_pred             HHcCCc-EEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCc--CCCCCCCH
Confidence            999998 455799999999999999999999999999999999999999999999999999999999874  4444 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         379 EEVIQAGKLRGPMIKSMVTRIVS  401 (412)
Q Consensus       379 ~ev~~~~~~~~~~~~~ll~~~i~  401 (412)
                      +|+++.++++++++.+++.++|+
T Consensus       221 ~ev~~~~~~~~~~~~~l~~~~i~  243 (245)
T PRK09136        221 AEIEAALDAAMGRVRELLERLVR  243 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998875

>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family

Probab=100.00  E-value=1.9e-46  Score=359.89  Aligned_cols=247  Identities=55%  Similarity=0.948  Sum_probs=227.1

Q ss_pred             ceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH
Q psy9643         147 KIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL  226 (412)
Q Consensus       147 ~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~  226 (412)
                      ++|||+||||+++.+..++...+||+++|+||..+++||+++++.|+++|++|++++++.|.|+|+.++.+.+++++++.
T Consensus         1 ~~~ii~gsg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~g~~Vv~~~~gih~~~Gk~~~a~~~~~~~l~~   80 (248)
T TIGR01697         1 DVAIILGSGLGALADQVEDAVIIPYEKIPGFPVSTVVGHAGELVFGRLGGKPVVCMQGRFHYYEGYDMATVTFPVRVMKL   80 (248)
T ss_pred             CEEEEeeCCcchhhhhcccceEeeCccCCCCCCcccCCCCccEEEEEECCEEEEEEcCCCcccCCCCHHHHHHHHHHHHH
Confidence            47999999999976767788899999999999999999999999999999999999999999999999999888999999


Q ss_pred             cCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCc
Q psy9643         227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS  306 (412)
Q Consensus       227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~  306 (412)
                      +|++.||.+|++|++++++++||+|+++|++++++   .+|+.+.+...++..|+.+..+||++|++.+.+++++.|++ 
T Consensus        81 ~Gv~~II~~GsaGsl~~~l~~GDiVI~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~-  156 (248)
T TIGR01697        81 LGVEILVVTNAAGGLNPDFKPGDLMIIKDHINLPG---LNPLVGPNDDRFGTRFPDLSNAYDRELRKLAQDVAKELGFP-  156 (248)
T ss_pred             cCCCEEEEecccccCCCCCCCCCEEEEhhhhhcCC---CCCccCCCcccCCceeCCCCcccCHHHHHHHHHHHHHcCCc-
Confidence            99999999999999999999999999999999987   57776665555666778888889999999999999999998 


Q ss_pred             ceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643         307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK  386 (412)
Q Consensus       307 ~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~  386 (412)
                       ++.|+|++++||+|+|++|.++++++|+++||||++||+++|+++|+||++|++|||+++|.  .+++++++++.+.++
T Consensus       157 -~~~G~~~~~~G~~f~t~~e~~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~--~~~~~~~~~~~~~~~  233 (248)
T TIGR01697       157 -LTEGVYVMVSGPSYETPAEIRMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGI--TDVPLSHEEVLAAAA  233 (248)
T ss_pred             -eeeEEEEEEECCCcCCHHHHHHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCccc--CCCCCCHHHHHHHHH
Confidence             88999999999999999999999999999999999999999999999999999999999752  457889999999998


Q ss_pred             HHHHHHHHHHHHHH
Q psy9643         387 LRGPMIKSMVTRIV  400 (412)
Q Consensus       387 ~~~~~~~~ll~~~i  400 (412)
                      ++++.+.++|.++|
T Consensus       234 ~~~~~~~~ll~~~~  247 (248)
T TIGR01697       234 AAAERFISLLEDII  247 (248)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88887777777765

Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.

>PRK08666 5'-methylthioadenosine phosphorylase; Validated

Probab=100.00  E-value=1.6e-44  Score=348.94  Aligned_cols=239  Identities=29%  Similarity=0.457  Sum_probs=210.8

Q ss_pred             CceeEeeCcCccc--ccccc-cCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH-
Q psy9643         146 PKIGIICGSGLST--IADSI-TDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM-  219 (412)
Q Consensus       146 ~~~GIi~GsGl~~--~~~~~-~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~-  219 (412)
                      |++|||+|||+..  +.+.+ ++..+++|..+             +++.|+++|++|++++  |+.|.|   +++++|+ 
T Consensus         2 ~~igII~gsgl~~~~l~~~~~~~~~~~~~g~~-------------~~~~G~~~g~~Vv~l~~~G~gh~~---~~~kVn~~   65 (261)
T PRK08666          2 VRIAIIGGSGVYDPKILENIREETVETPYGEV-------------KVKIGTYAGEEVAFLARHGEGHSV---PPHKINYR   65 (261)
T ss_pred             CcEEEEecCCCCccchhhhcccceeEeeCCCC-------------EEEEEEECCEEEEEEeCCCCCCcc---ChhhcchH
Confidence            6799999999977  55555 56666666543             6999999999998665  999996   6888887 


Q ss_pred             -HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643         220 -PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI  298 (412)
Q Consensus       220 -~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~  298 (412)
                       ++++++.+||+.||++|++|++++++++||+|+++|++++++   ++|+.+.+...++.+|.++.++||++|++.+.++
T Consensus        66 a~~~~l~~~Gv~~II~tgsaGsl~~~l~~GDiVi~~d~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~  142 (261)
T PRK08666         66 ANIWALKELGVERILATSAVGSLNPNMKPGDFVILDQFLDFTK---NRHYTFYDGGESGVVHVDFTDPYCPELRKALITA  142 (261)
T ss_pred             HHHHHHHHCCCCEEEEeccccccCCCCCCCCEEeehhhhhcCC---CCCccccCCCCCCcCCCCCCcccCHHHHHHHHHH
Confidence             789999999999999999999999999999999999999987   5565554434455667888999999999999999


Q ss_pred             HHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCH
Q psy9643         299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH  378 (412)
Q Consensus       299 a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~  378 (412)
                      ++++|++ ++..|+|++++||+|+|+||.+++++||+|+||||++||+++|+++|+||++|++|||+++|  ..+.+++|
T Consensus       143 a~~~g~~-~~~ggvy~~~~Gp~fet~ae~~~~~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~--~~~~~~~~  219 (261)
T PRK08666        143 ARELGLT-YHPGGTYVCTEGPRFETAAEIRMFRILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAG--ISPTKLTH  219 (261)
T ss_pred             HHHCCCc-eEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeecccc--CCCCCCCH
Confidence            9999998 34469999999999999999999999999999999999999999999999999999999976  35678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         379 EEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       379 ~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      +++++.+++++.++.+++.+++++++.+
T Consensus       220 ~e~~~~~~~~~~~~~~ll~~~~~~~~~~  247 (261)
T PRK08666        220 SEVVELMAQNSENIKKLIMKAIELIPKE  247 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence            9999999999999999999999998643

>KOG3985|consensus

Probab=100.00  E-value=2.7e-44  Score=327.25  Aligned_cols=249  Identities=23%  Similarity=0.318  Sum_probs=226.1

Q ss_pred             CCceeEeeCcCcccccccccCceeeecCCCCCccccCCCC-CceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH--
Q psy9643         145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG-HKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM--  219 (412)
Q Consensus       145 e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pG-H~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~--  219 (412)
                      ..++|||+||||+++ +.++++.+.        -..+.+| .++.++.|+++|..++++  |||.|.|   .|++|||  
T Consensus         9 ~VklGIIGGsGl~dp-~ile~~ve~--------~v~TP~G~pSd~v~~g~i~gv~cvllARHGr~H~i---mPt~Vn~rA   76 (283)
T KOG3985|consen    9 TVKLGIIGGSGLYDP-DILEDPVEL--------VVPTPWGKPSDPVIIGQISGVHCVLLARHGRKHDI---MPTKVNFRA   76 (283)
T ss_pred             eEEEEEeccCCCCCc-hhhhcchhh--------cCCCCCCCcCCceeeeecCCeEEEEEeccccCCcc---CCCcCchhH
Confidence            468999999999996 344443331        1125566 367899999999998887  7999985   8999999  


Q ss_pred             HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643         220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA  299 (412)
Q Consensus       220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a  299 (412)
                      ++|+++.+||..||++.++|||+++++|||+|+++++|+.+..|.+++|+|..+...|.+|+++.+|||+++|+.+.+.+
T Consensus        77 NiwALk~~gc~~ii~~tAcGSLre~I~Pgd~v~p~q~IDrTt~R~~tffdg~~~~a~gVcHv~~~~pf~~k~reil~~~a  156 (283)
T KOG3985|consen   77 NIWALKSLGCTAIISFTACGSLREEIKPGDFVLPDQIIDRTTGRPSTFFDGSYDQAGGVCHVPFGPPFSQKLREILISTA  156 (283)
T ss_pred             hHHHHHhCCCcEEEEeeccccccccCCCccEecchhhhhhhccCccccccCcccCCCceEeccCCCCcCHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999888899999988888899999999999999999999999


Q ss_pred             HHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHH
Q psy9643         300 RDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE  379 (412)
Q Consensus       300 ~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~  379 (412)
                      ++++++ .+..|+.+|++||+|+|+||..|+|+|||+++.|+..||+.+|+|+|+||..+++.|||.+|+ ..+++++.+
T Consensus       157 ~~l~~~-~hd~~tvVciEGPrFStRAES~mfR~wGa~vINMt~iPE~~LAkEagi~Y~~iamaTDYDcWr-~~ee~Vtve  234 (283)
T KOG3985|consen  157 KELTNP-HHDDGTVVCIEGPRFSTRAESKMFRSWGASVINMTVIPEAKLAKEAGIPYQMIAMATDYDCWR-MEEEPVTVE  234 (283)
T ss_pred             HHhcCC-cCCceeEEEeeCCccchHHHHHHHHHhccceeeeeechHHHHHHhcCcchhhheeccchhhhh-ccCCCccHH
Confidence            999998 678999999999999999999999999999999999999999999999999999999999997 778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643         380 EVIQAGKLRGPMIKSMVTRIVSYIGEHQ  407 (412)
Q Consensus       380 ev~~~~~~~~~~~~~ll~~~i~~l~~~~  407 (412)
                      .|++.++.+..+...++.+.+.+|+...
T Consensus       235 ~Vm~~~~~N~~kak~ll~~av~~i~k~~  262 (283)
T KOG3985|consen  235 TVMKTLANNVRKAKILLLEAVGSIAKED  262 (283)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999987654

>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase

Probab=100.00  E-value=8.8e-39  Score=305.63  Aligned_cols=232  Identities=25%  Similarity=0.388  Sum_probs=201.2

Q ss_pred             ceeEeeCcCcccc---cccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--
Q psy9643         147 KIGIICGSGLSTI---ADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM--  219 (412)
Q Consensus       147 ~~GIi~GsGl~~~---~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~--  219 (412)
                      ++|||+||||+++   ++..+++.++||.+++           ++++.|+++|++|++++  |+.|.|   +|+.+|+  
T Consensus         1 ~~~ii~gs~~~~~~~~~~~~~~~~~tp~g~~~-----------~~~~~G~~~g~~vv~~~~~G~g~~~---~~~~vn~~a   66 (241)
T TIGR01694         1 MIGVIGGSGLYDLEGLKDVEEVNVDTPYGNPS-----------APIVVGRVAGVDVAFLPRHGRGHDI---PPHEVNYRA   66 (241)
T ss_pred             CEEEEeccccccccccccceEEEEECCCCCCC-----------CCEEEEEECCEEEEEEeCCCCCCcc---ChHHCCcHH
Confidence            4799999999997   5566666677776542           47999999999999865  999986   7999998  


Q ss_pred             HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643         220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA  299 (412)
Q Consensus       220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a  299 (412)
                      +++.++.+|++.||++|++|++++++++||+|+++|+++++.   .+|....+...  ..|.++..++|++|++.+.+++
T Consensus        67 ~~~~L~~~Gv~~iI~~GsaG~l~~~l~~GDlVI~~~~i~~~~---~~~~~~~~~~~--~~~~~~~~~~d~~L~~~l~~~a  141 (241)
T TIGR01694        67 NIWALKSLGVKYVISVNAVGSLREEYPPGDLVVPDQFIDRTS---GRPSTFFDGGK--VVHVDFGDPYCEDLRQRLIESL  141 (241)
T ss_pred             HHHHHHHcCCCEEEEeccccccCCCCCCCCEEEEhhHhhccC---CCCCccCCCCc--cCCCCCCCCCCHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999886   33322111110  2456677789999999999999


Q ss_pred             HHcCCCccee-eceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCH
Q psy9643         300 RDLNMSSIVK-EGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANH  378 (412)
Q Consensus       300 ~~~g~~~~~~-~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~  378 (412)
                      ++++++  ++ .|+|++++||+|+|++|.++++++|+++||||++||+++|+++|+|+++|++|||.+++  .++++++|
T Consensus       142 ~~~~~~--~~~~G~~~~~~G~~f~t~~e~~~~~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~--~~~~~~~~  217 (241)
T TIGR01694       142 RRLGLT--VHDGGTYVCTEGPRFSTRAESRMFKSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCW--ISADHVTA  217 (241)
T ss_pred             HHcCCc--EEeceEEEeCcCCCcCCHHHHHHHHHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeecccc--CCCCCCCH
Confidence            999998  66 89999999999999999999999999999999999999999999999999999999975  36788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         379 EEVIQAGKLRGPMIKSMVTRIVS  401 (412)
Q Consensus       379 ~ev~~~~~~~~~~~~~ll~~~i~  401 (412)
                      +++.+.++++...+.+++.++|.
T Consensus       218 ~e~~~~~~~~~~~~~~~~~~~~~  240 (241)
T TIGR01694       218 EEVEEVMGENVEKAKRILLEAIK  240 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998875

In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.

>KOG0460|consensus

Probab=99.93  E-value=1.2e-26  Score=224.33  Aligned_cols=154  Identities=38%  Similarity=0.587  Sum_probs=128.1

Q ss_pred             hhhhccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccc
Q psy9643          82 YAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIA  160 (412)
Q Consensus        82 ~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~  160 (412)
                      ++.+.++.|+|||+|||+|||||||||||+.+|+++|.+ |......|+++++|        ++|+.||||+        
T Consensus        42 ~~a~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~A--------PEEkaRGITI--------  105 (449)
T KOG0460|consen   42 YAAKAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKA--------PEEKARGITI--------  105 (449)
T ss_pred             eccccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcC--------hhhhhccceE--------
Confidence            344678999999999999999999999999999999987 77777778776554        5689999999        


Q ss_pred             ccccCceeeecC-CCCCccccCCCCCce---eEEEEe--eCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHc
Q psy9643         161 DSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLV  227 (412)
Q Consensus       161 ~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~l  227 (412)
                          +..++.|+ ..++|.-.|||||+|   ||++|+  .+|+.+|+.       |+|+|+             .++++.
T Consensus       106 ----n~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl-------------LLArQV  168 (449)
T KOG0460|consen  106 ----NAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL-------------LLARQV  168 (449)
T ss_pred             ----eeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH-------------HHHHHc
Confidence                78889999 688999999999999   999996  468777764       899999             899999


Q ss_pred             CCCEEEE-EeccCCC-CCCCCCccHHHHHHHHhhccCCCCC-CC
Q psy9643         228 GVTHLLA-TNAAGGL-NPDYEVGDIMIIKDHINLMGFAGNN-PL  268 (412)
Q Consensus       228 Gv~~II~-~n~~G~l-~~~~~~Gd~vi~~d~i~~~~~~~~~-pl  268 (412)
                      ||++|++ +||++.+ ++++-.--.|.++..++..+|.|++ |.
T Consensus       169 GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv  212 (449)
T KOG0460|consen  169 GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV  212 (449)
T ss_pred             CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence            9999886 8999998 4443322245678999999988765 54

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=6.6e-25  Score=218.18  Aligned_cols=200  Identities=22%  Similarity=0.418  Sum_probs=136.9

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHH----------HHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIA----------KFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~----------~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      ..+|||+|+++|||||||||||+|||   ||+ |.++.++++++++.+          +|++|++++||++|+|+..   
T Consensus         2 ~~~Kph~nl~~iGHVD~GKSTl~GrL---ly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~---   75 (428)
T COG5256           2 ASEKPHLNLVFIGHVDAGKSTLVGRL---LYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV---   75 (428)
T ss_pred             CCCCCceEEEEEcCCCCCchhhhhhh---HHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE---
Confidence            35899999999999999999999999   898 999999999987654          7999999999999999944   


Q ss_pred             cccccccCceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCccccH-HHHHHHHcCCC
Q psy9643         158 TIADSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLWKCAM-PIRVMKLVGVT  230 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~~v~~-~i~ll~~lGv~  230 (412)
                               ....|+ +.+.|+++|||||+|   +|+.|..+ +..|+++..+...|| |..+.-... .+.|++.+|++
T Consensus        76 ---------~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~  146 (428)
T COG5256          76 ---------AHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK  146 (428)
T ss_pred             ---------EEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc
Confidence                     344445 556789999999999   89999765 445555422222222 211111111 22899999999


Q ss_pred             EEEE-EeccCCCCCCCCCccHHHHHH----HHhhccCCCCC----C---CCCCC------CCCC--CCCC-------CCC
Q psy9643         231 HLLA-TNAAGGLNPDYEVGDIMIIKD----HINLMGFAGNN----P---LLGVN------EDRF--GPRF-------PPM  283 (412)
Q Consensus       231 ~II~-~n~~G~l~~~~~~Gd~vi~~d----~i~~~~~~~~~----p---l~g~~------~~~~--g~~~-------~~~  283 (412)
                      ++|+ +||||.++  |..-.+-.+.+    ++...++...+    |   |.|.|      ..+|  |+.+       ...
T Consensus       147 ~lIVavNKMD~v~--wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~~~~p  224 (428)
T COG5256         147 QLIVAVNKMDLVS--WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPP  224 (428)
T ss_pred             eEEEEEEcccccc--cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhccCCC
Confidence            9887 89999987  66666655443    33333332221    1   22322      1122  3332       223


Q ss_pred             cccccHHHHHHHHHHHHHcCCC
Q psy9643         284 NKAYNKQLRAATLDIARDLNMS  305 (412)
Q Consensus       284 ~~~~d~~Lr~~~~~~a~~~g~~  305 (412)
                      ..+.|.+||-.+.++....|+.
T Consensus       225 ~~~~d~Plr~pI~~v~~i~~~g  246 (428)
T COG5256         225 ERPLDKPLRLPIQDVYSISGIG  246 (428)
T ss_pred             CCCCCCCeEeEeeeEEEecCCc
Confidence            4568888888888877655554

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.3e-24  Score=206.88  Aligned_cols=152  Identities=32%  Similarity=0.519  Sum_probs=123.5

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      |+.+.|.|||+|||+|||||||||||+.+|++.|.+ +......|+++        |..++|+++|||+           
T Consensus         3 k~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~i--------d~aPeEk~rGITI-----------   63 (394)
T COG0050           3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQI--------DNAPEEKARGITI-----------   63 (394)
T ss_pred             hhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhh--------ccCchHhhcCcee-----------
Confidence            678999999999999999999999999999998886 55555555554        3456789999999           


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEee--CCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                       +..+..|+ +.++|..+|||||+|   ||++|.+  +|+.+|+.       |+|+|.             .++++.||+
T Consensus        64 -ntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-------------LlarqvGvp  129 (394)
T COG0050          64 -NTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------------LLARQVGVP  129 (394)
T ss_pred             -ccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-------------hhhhhcCCc
Confidence             77788888 788999999999999   9999965  57777764       899998             899999998


Q ss_pred             EEEE-EeccCCCC-CCCCCccHHHHHHHHhhccCCC-CCCCC
Q psy9643         231 HLLA-TNAAGGLN-PDYEVGDIMIIKDHINLMGFAG-NNPLL  269 (412)
Q Consensus       231 ~II~-~n~~G~l~-~~~~~Gd~vi~~d~i~~~~~~~-~~pl~  269 (412)
                      +|++ .||++.++ +++-.---+.+.|+++..+|+| +.|..
T Consensus       130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii  171 (394)
T COG0050         130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPII  171 (394)
T ss_pred             EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence            8776 89999987 3333333456789999888875 45653

>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2

Probab=99.85  E-value=1.9e-21  Score=183.93  Aligned_cols=203  Identities=22%  Similarity=0.253  Sum_probs=157.1

Q ss_pred             eeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCC
Q psy9643         187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN  266 (412)
Q Consensus       187 ~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~  266 (412)
                      .+++.|.++|..+++.++..    |.+........++++.++++.||.+|.||++++++++||++++++.+++++.   .
T Consensus        32 ~~~~~g~~~~~~v~i~~~g~----G~~~aa~~~~~~~l~~~~~~~vi~~G~~G~~~~~~~~GDvvi~~~~~~~d~~---~  104 (234)
T PF01048_consen   32 FTYYTGKYGGKNVVIVSTGM----GPVNAAVIATQRLLEEFGPDLVIMIGICGGLDPDIKLGDVVIPQDAIRYDGD---S  104 (234)
T ss_dssp             EEEEEEEETTEEEEEEEESS----SHHHHHHHHHHHHHHHCTSSEEEEEEEEEESSTTS-TTEEEEEEEEEEESSH---H
T ss_pred             cEEEEEEECCEEEEEEECCc----CCchHHHHHHHHHHHhCCCeEEEEeccccccccccccceEEecccEEeccCc---c
Confidence            48999999999888875331    2111111234578889999999999999999999999999999998876552   1


Q ss_pred             CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHH
Q psy9643         267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEV  346 (412)
Q Consensus       267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa  346 (412)
                      +..+.+.. ..........++|+.|++.+.+.+++.+.+  ++.|++++.+++.+++.++.+.++++|+++++||+++++
T Consensus       105 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~G~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~  181 (234)
T PF01048_consen  105 PSFFFDEE-PPYAPVSRPAPADPDLREALKEAAKALGIP--VHEGPIASGDSFYRETEAEIELLQKFGADAVDMESAAVA  181 (234)
T ss_dssp             GHHSSETT-SGTSTSCSTEESHHHHHHHHHHHHHHTTST--EEEEEEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHH
T ss_pred             cccccccc-ccccccccccccCHHHHHHHHHhhhccccc--cccceEEEEeeeccchhhHHHHHHhcccccccchHHHHH
Confidence            11111100 011112233468999999999999999998  999999998888888989999999999999999999999


Q ss_pred             HHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         347 ITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS  401 (412)
Q Consensus       347 ~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~  401 (412)
                      .+|+++|+|+++|+.|||++..  ....+.++++........+..+.+++.++|+
T Consensus       182 ~~a~~~~ip~~~i~~isD~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~  234 (234)
T PF01048_consen  182 QAARERGIPFIAIRGISDYADG--GDDDEWTFEEFKEFLQLAAENAAAILEELLK  234 (234)
T ss_dssp             HHHHHTT-EEEEEEEEEEETTT--TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEEEEEcCCcc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999998853  2356677788888888888888888888874

4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....

>KOG0460|consensus

Probab=99.84  E-value=9.3e-22  Score=190.49  Aligned_cols=83  Identities=43%  Similarity=0.740  Sum_probs=77.3

Q ss_pred             EEee---cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCCccCcc-----ccchhhcccccccc
Q psy9643           3 VYYI---DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLY-----PNDKFEINKLNVFV   73 (412)
Q Consensus         3 ~~~~---d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~~~~~~-----~~~~~~~~~~~~~~   73 (412)
                      |||+   |+ +|+|++||||||+||||++||||||++|||+||||+|||++++++|.++++     .|+.+-+|.++   
T Consensus       174 vvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~---  250 (449)
T KOG0460|consen  174 VVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD---  250 (449)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc---
Confidence            7888   88 599999999999999999999999999999999999999999999999988     38999999999   


Q ss_pred             ccccccchhhhhccccC
Q psy9643          74 PLINSRRGYAEKQVYSR   90 (412)
Q Consensus        74 ~~~~~~~~~~~~~~~~~   90 (412)
                        ++++|+||++.+++-
T Consensus       251 --~~~pFl~pie~vfsI  265 (449)
T KOG0460|consen  251 --LDKPFLLPIEDVFSI  265 (449)
T ss_pred             --cCCCceeehhheeee
Confidence              888899999998853

>PRK06714 S-adenosylhomocysteine nucleosidase; Validated

Probab=99.83  E-value=1.3e-19  Score=172.73  Aligned_cols=196  Identities=13%  Similarity=0.107  Sum_probs=147.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      +++.|.++|.+|++.++.        ++.+|.+   ..++..++++.||++|.||++++++++||+++.++.++++..  
T Consensus        33 ~~~~g~~~~~~vv~~~sG--------iGkvnAA~~~~~li~~f~~~~IIn~G~aG~l~~~l~iGDvVi~~~~~~~D~~--  102 (236)
T PRK06714         33 EFHFHTINDLEIISVITG--------VGKVSCASCVQLLISEFQPDELFMTGICGSLSNKVKNGHIVVALNAIQHDVT--  102 (236)
T ss_pred             EEEEEEECCEEEEEEeCC--------CCHHHHHHHHHHHHHhCCCCEEEEEEcccCCCCCCCCCCEEEECeeeeccCc--
Confidence            789999999999988643        3455553   478889999999999999999999999999999998887641  


Q ss_pred             CCCCCCCCCCCCCCC-CCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHH--HHHHcCCcEEeCc
Q psy9643         265 NNPLLGVNEDRFGPR-FPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELN--MLRICGVDAVGMS  341 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~-~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~--~~~~~Gad~VgMe  341 (412)
                      .+++. .  ..++.. ......+.|+.|...+++...  +.+  ++.|.+  .+|++|.+..+.+  ..+.+|+++|+||
T Consensus       103 ~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--~~~G~i--~SgD~Fv~~~~~~~~l~~~~~a~~vdME  173 (236)
T PRK06714        103 AAGSG-E--DVFNLYNGRTAPIETTKSLVRRIKKIRS--YDP--IHFGTF--LSGDQRIRSSEMRYLLHTVYGALAVDQE  173 (236)
T ss_pred             cccCC-c--ccccccCCccccccCCHHHHHHHHHHhc--cCC--eEEeEE--EecCeecCCHHHHHHHHHHCCCeEEEeh
Confidence            22221 0  001100 011123457888888776543  344  788965  5899998655543  4567899999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLN  409 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~  409 (412)
                      +++.+++|+.+|+|+++|+.|||.+    +.+...++++++..+.+++   .+++.++|+++.-+-.|
T Consensus       174 ~aAvA~vc~~~~vP~l~IR~ISD~a----~~~~~~~~~~f~~~aa~~s---a~~~~~~l~~~~~~~~~  234 (236)
T PRK06714        174 VAAFAYVCQINKKPFLCLKAASDQA----NDKTKEEQKIFKMLACERA---CEHLIAFLRVYEINVVN  234 (236)
T ss_pred             HHHHHHHHHHhCCCEEEEEEeccCC----CCccccCHHHHHHHHHHHH---HHHHHHHHHHhHhhhhc
Confidence            9999999999999999999999998    3566778999887776665   46888999988776655

>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated

Probab=99.82  E-value=3.6e-19  Score=168.82  Aligned_cols=192  Identities=19%  Similarity=0.290  Sum_probs=146.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|++|++..+..        +.++..   .+++..++++.||++|.+|++++++++||+++++++++++.  +
T Consensus        32 ~~~~g~~~g~~v~v~~tG~--------G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~GDvvi~~~~~~~d~--~  101 (230)
T PRK05584         32 EFYTGTLHGHEVVLVLSGI--------GKVAAALTATILIEHFKVDAVINTGVAGGLAPGLKVGDVVVADELVQHDV--D  101 (230)
T ss_pred             EEEEEEECCEEEEEEECCc--------CHHHHHHHHHHHHHhcCCCEEEEEEecCCCCCCCccCCEEEECeEEEecc--C
Confidence            6888999999999886543        233332   36777899999999999999999999999999999987654  1


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHH-Hc-CCcEEeCc
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLR-IC-GVDAVGMS  341 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~-~~-Gad~VgMe  341 (412)
                      .+++..... . .+. .+...++|+.|++.+.+.+++.+++  ++.|.+  .+|++|. +..+.+.++ ++ |+++++||
T Consensus       102 ~~~~~~~~~-~-~~~-~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~--~s~d~f~~~~~~~~~l~~~~~~~~~veME  174 (230)
T PRK05584        102 VTAFGYPYG-Q-VPG-LPAAFKADEKLVALAEKAAKELNLN--VHRGLI--ASGDQFIAGAEKVAAIRAEFPDALAVEME  174 (230)
T ss_pred             ccccCCcCC-c-cCC-CCcceeCCHHHHHHHHHHHHhcCCc--EEEEEE--EEcchhcCCHHHHHHHHHhCCCCeEEech
Confidence            222211100 0 011 1223678999999999999999988  889976  4899997 566666665 57 99999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      +++++++|+.+|+|+++|+.|||.+.    +....+++++...+++++   .+++..+|..+
T Consensus       175 ~aa~a~va~~~~vp~~~ir~vSd~~~----~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~  229 (230)
T PRK05584        175 GAAIAQVCHEFGVPFVVVRAISDTAD----DEAHVSFDEFLAVAAKYS---ANILKRMLEKL  229 (230)
T ss_pred             HHHHHHHHHHcCCCEEEEEEeccCCC----CcccccHHHHHHHHHHHH---HHHHHHHHHhc
Confidence            99999999999999999999999994    345668888877665555   45677777654

>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional

Probab=99.81  E-value=4.6e-19  Score=168.80  Aligned_cols=190  Identities=16%  Similarity=0.232  Sum_probs=142.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|+++|.+|++.++.        ++.+|.+   .+++..++++.||++|.||++++++++||+|+.+..++++..  
T Consensus        33 ~~~~G~~~g~~v~v~~sG--------iG~vnAA~~~~~li~~f~~~~II~~G~AG~l~~~l~iGDvVi~~~~~~~D~~--  102 (233)
T PRK14697         33 PFYVGEFMGTEVIVTRCG--------VGKVNAAACTQTLIHKFDVDAIINTGVAGGLHPDVKVGDIVISTNVTHHDVS--  102 (233)
T ss_pred             EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEecccCCCCCCCcCCEEEECeeEEcCCC--
Confidence            688999999999988643        2344553   478889999999999999999999999999999998887651  


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH--cCCCcceeeceEEEEecCccCC-HHHHH-HHHHcCCcEEeC
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD--LNMSSIVKEGVYSVIGGPNFET-VAELN-MLRICGVDAVGM  340 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~--~g~~~~~~~Gvy~~~~GP~feT-~AE~~-~~~~~Gad~VgM  340 (412)
                      .+.+.+.    + +.  +..++.|.+|.+.+.+.++.  .+++  ++.|.+  .+|++|.+ +.+.. .++++++++|+|
T Consensus       103 ~~~~~~~----~-p~--~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~G~i--~SgD~fi~~~~~~~~l~~~~~~~~vdM  171 (233)
T PRK14697        103 KTQMKNL----F-PF--QEEFIASKELVELARKACNSSSLHIE--IHEGRI--VSGECFVEDSKLKAKLIDEYAPHCTEM  171 (233)
T ss_pred             hhhhccc----C-CC--CcccCCCHHHHHHHHHHhhhccCCcc--EEEeEE--EEcCeecCCHHHHHHHHHhcCCeEEEe
Confidence            1111110    0 00  11234689999988887754  3455  888965  58999985 44433 557799999999


Q ss_pred             chhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643         341 STVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE  405 (412)
Q Consensus       341 e~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~  405 (412)
                      |+++.+++|+.+|+||++||.|||.+.    .+...+++++...+.   ..+.+++.+++.++..
T Consensus       172 E~aAva~v~~~~~vpfl~iR~ISD~a~----~~~~~~~~~~~~~aa---~~~~~~~~~~l~~~~~  229 (233)
T PRK14697        172 EGAAIGHVAYINEVPFLVIRCISDSAD----DEAQISYDDFAKTAA---NYCSEIIVEMLKNISS  229 (233)
T ss_pred             hHHHHHHHHHHcCCCEEEEEEeccCCC----CCCcCCHHHHHHHHH---HHHHHHHHHHHHHhhh
Confidence            999999999999999999999999983    456778888875443   3445677777776644

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.80  E-value=8.9e-19  Score=182.38  Aligned_cols=193  Identities=16%  Similarity=0.200  Sum_probs=147.0

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|++.++.        ++.+|++   .+++..++++.||++|.+|++++++++||+|+++..++++..  
T Consensus        33 ~~~~G~~~g~~v~v~~sG--------iG~v~AA~~~~~li~~~~~~~ii~~G~aG~l~~~l~~gDvvi~~~~~~~d~~--  102 (459)
T PRK06698         33 PFYVGEFMGTEVIVTRCG--------VGKVNAAACTQTLIHKFDVDAIINTGVAGGLHPDVKVGDIVISTNVTHHDVS--  102 (459)
T ss_pred             EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEecccCCCCCCcCCCEEEEceeEEccCC--
Confidence            789999999999998643        3445554   377789999999999999999999999999999999887651  


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HH-HHHHcCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LN-MLRICGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~-~~~~~Gad~VgMe~  342 (412)
                      .+.+.+.     -+.  +..++.|++|.+.+.+.++..+....++.|.+  .+|++|.+..+ .+ .++++|+++|+||+
T Consensus       103 ~~~~~~~-----~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~G~i--~sgd~f~~~~~~~~~l~~~~~a~~veME~  173 (459)
T PRK06698        103 KTQMKNL-----FPF--QEEFIASKELVELARKACNSSSLHMEIHEGRI--VSGECFVEDSKLKAKLIDEYAPHCTEMEG  173 (459)
T ss_pred             ccccCCc-----CCC--CCCcCCCHHHHHHHHHHHHhccCCccEEEeeE--EecCeecCCHHHHHHHHHHcCCcEEehhh
Confidence            1222110     011  12245689999999998876533223889965  58999986544 33 55789999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      ++.+++|+.+|+||++||.|||.+    +.+...+++++.+.+.+++   .+++.++|+++...
T Consensus       174 aava~va~~~~vp~~~iR~iSD~a----~~~~~~~~~~~~~~a~~~~---~~~v~~~l~~~~~~  230 (459)
T PRK06698        174 AAIGHVAYINEVPFLVIRCISDSA----DDEAQISYDDFAKTAANYC---SEIIVEMLKTISSK  230 (459)
T ss_pred             HHHHHHHHHcCCCEEEEEEeccCC----CCCCccCHHHHHHHHHHHH---HHHHHHHHHHhccc
Confidence            999999999999999999999999    3567788998876555544   45777888776443

>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase

Probab=99.79  E-value=1.7e-18  Score=164.28  Aligned_cols=190  Identities=19%  Similarity=0.279  Sum_probs=145.3

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      +++.|.++|.+|++.++..        +.+|.+   .+++..++++.||++|.+|++++++++||+++++..++++.  +
T Consensus        31 ~~~~g~~~g~~v~i~~sGi--------G~vnAA~~~~~li~~~~p~~II~~G~aG~l~~~l~~GDvvi~~~~~~~d~--~  100 (228)
T TIGR01704        31 EIYTGQLNGTEVALLKSGI--------GKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA--D  100 (228)
T ss_pred             EEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHhCCCCEEEEEeeccCCCCCCccCCEEEEEEEEEccC--c
Confidence            7899999999999886543        344553   36788899999999999999999999999999998776643  1


Q ss_pred             CCCCCCCCCCCCC--CCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHHH-HHc-CCcEEe
Q psy9643         265 NNPLLGVNEDRFG--PRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNML-RIC-GVDAVG  339 (412)
Q Consensus       265 ~~pl~g~~~~~~g--~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~~-~~~-Gad~Vg  339 (412)
                      .+++.-    .+|  +. .+..+..|++|.+.+.+.+++.+.+  ++.|..  .+|+.|.+..+ .+.+ +++ ++++|+
T Consensus       101 ~~~~~~----~~g~~~~-~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~i--~T~d~f~~~~~~~~~l~~~~~~~~~vd  171 (228)
T TIGR01704       101 VTAFGY----EYGQLPG-CPAGFKADDKLIAAAEACIAELNLN--AVRGLI--VSGDAFINGSVGLAKIRHNFPQAIAVE  171 (228)
T ss_pred             ccccCC----cCCcCCC-CCceeeCCHHHHHHHHHHHHhcCCC--eEEEEE--EEcChhcCCHHHHHHHHHHCCcccEec
Confidence            222210    011  11 1223467999999999999998887  888964  68999976444 4444 557 899999


Q ss_pred             CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ||+++.+++|+.+|+||++|+.|||.+.    .+...++++++..+.+.+   .+++..+|+++
T Consensus       172 ME~aAva~va~~~~ip~~~iR~ISD~a~----~~~~~~~~~~~~~aa~~~---~~~~~~~~~~~  228 (228)
T TIGR01704       172 MEATAIAHVCHNFNVPFVVVRAISDVAD----QQSHLSFDEFLAVAAKQS---SLMVESLVQKL  228 (228)
T ss_pred             ccHHHHHHHHHHhCCCEEEEEEecccCC----CccccCHHHHHHHHHHHH---HHHHHHHHHhC
Confidence            9999999999999999999999999983    455678888877665554   45777777753

There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.

>KOG0458|consensus

Probab=99.79  E-value=8.5e-20  Score=187.59  Aligned_cols=141  Identities=22%  Similarity=0.390  Sum_probs=112.9

Q ss_pred             cccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcC
Q psy9643          87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSG  155 (412)
Q Consensus        87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsG  155 (412)
                      .....|+|+|.+++||||+|||||+|||   ||. |.++.+...++++          +++|++|.+++||++||+...+
T Consensus       170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~l---LydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~  246 (603)
T KOG0458|consen  170 EQSDPKDHLNLVVLGHVDAGKSTLMGHL---LYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVK  246 (603)
T ss_pred             cccCCccceEEEEEeccccchhhhhhHH---HHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEee
Confidence            3345678999999999999999999999   887 8888877776654          3589999999999999999443


Q ss_pred             cccccccccCceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe---------------cceeeeecCCCCc
Q psy9643         156 LSTIADSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM---------------QGRFHYYEGYPLW  215 (412)
Q Consensus       156 l~~~~~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~---------------qgr~H~yeg~~~~  215 (412)
                                  ...|+ ....++++|+|||+|   +|+.|... +..++|.               |+|+|+       
T Consensus       247 ------------~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-------  307 (603)
T KOG0458|consen  247 ------------TTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-------  307 (603)
T ss_pred             ------------eEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-------
Confidence                        33444 445679999999998   88888765 3445443               677777       


Q ss_pred             cccHHHHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHHHHHH
Q psy9643         216 KCAMPIRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKDHI  257 (412)
Q Consensus       216 ~v~~~i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d~i  257 (412)
                            .+++.||+.++|+ +||+|-+.  |...+|..|...+
T Consensus       308 ------~llr~Lgi~qlivaiNKmD~V~--Wsq~RF~eIk~~l  342 (603)
T KOG0458|consen  308 ------LLLRSLGISQLIVAINKMDLVS--WSQDRFEEIKNKL  342 (603)
T ss_pred             ------HHHHHcCcceEEEEeecccccC--ccHHHHHHHHHHH
Confidence                  8999999999887 89999886  7778888776554

>TIGR03468 HpnG hopanoid-associated phosphorylase

Probab=99.77  E-value=2.7e-18  Score=161.23  Aligned_cols=152  Identities=16%  Similarity=0.225  Sum_probs=116.9

Q ss_pred             HHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643         219 MPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI  298 (412)
Q Consensus       219 ~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~  298 (412)
                      .+++.+..+|++.||++|.+|++++++++||+|+++..++. +                .     .+++|+.|...+.+.
T Consensus        36 ~~~~~l~~~~~~~vI~~G~aG~l~~~l~~Gdvvi~~~~~~~-g----------------~-----~~~~d~~l~~~l~~~   93 (212)
T TIGR03468        36 AAAARLMAAGAAGLVSFGTAGALDPALQPGDLVVPEEVRAD-G----------------D-----RFPTDPAWRRRLLEA   93 (212)
T ss_pred             HHHHHHHHcCCCEEEEEEecccCCCCCCCCCEEeehhheeC-C----------------C-----eecCCHHHHHHHHHH
Confidence            34566689999999999999999999999999998765332 1                1     236799999988888


Q ss_pred             HHHcCCCcceeeceEEEEecCccCCHHHHHHH-HHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643         299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNML-RICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN  377 (412)
Q Consensus       299 a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~-~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s  377 (412)
                      +. .+++  ++.|+|++.+++. .|++|.+.+ +.+|+++|+||+++++++|+++|+||++|++|||.+.    .+.+.+
T Consensus        94 l~-~~~~--~~~G~~~t~d~~~-~~~~~~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~----~~~~~~  165 (212)
T TIGR03468        94 LP-AGLR--VHRGVLAASDTVV-STAAAKAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPAD----RALPRA  165 (212)
T ss_pred             HH-hCCC--eEEEEEEEeCeEe-cCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCC----CcCchh
Confidence            76 4666  8999987666653 678887655 6799999999999999999999999999999999994    334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         378 HEEVIQAGKLRGPMIKSMVTRIVSY  402 (412)
Q Consensus       378 ~~ev~~~~~~~~~~~~~ll~~~i~~  402 (412)
                      +.+.+  .......+.+++..++++
T Consensus       166 ~~~~~--~~~g~~~~~~ll~~l~~~  188 (212)
T TIGR03468       166 ALDAL--RPDGSTALAALLRGLLRR  188 (212)
T ss_pred             HHHhc--CcccCccHHHHHHHHHhC
Confidence            43333  244444556667766664

The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.

>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional

Probab=99.73  E-value=4.4e-17  Score=153.51  Aligned_cols=178  Identities=10%  Similarity=0.079  Sum_probs=128.5

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH---HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM---PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~---~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      +++.|.++|.+|++.++..        +.+|.   ..+++..+|++.||++|.||++ +++++||+++++..++++.   
T Consensus        36 ~~y~~~~~g~~v~~~~sGi--------Gkv~aa~~~~~lI~~~~~~~iI~~G~aG~l-~~~~~gdvvi~~~~~~~D~---  103 (218)
T PRK07164         36 KIAIFRYKNYNILYINTGI--------GLINAALATQKLIEKYQIEIIINYGAVGSN-INIDLGQVVYPEKFYLLDA---  103 (218)
T ss_pred             eEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHHcCCCEEEEEEcccCc-CCCCCCCEEEEeeeEEccc---
Confidence            7899999999999876432        34444   3478888999999999999999 9999999999999887764   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCH-HHHHHHHHc-CCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV-AELNMLRIC-GVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~-AE~~~~~~~-Gad~VgMe~  342 (412)
                      .+++ ..    +| .++.....|....   +       +..  ++.|.  +.+||+|... .+.+.++++ ++++|+||+
T Consensus       104 ~~~~-~~----~g-~~p~~~~~~~~~~---~-------~~~--~~~~~--i~SgD~Fi~~~~~~~~l~~~~~a~~vDME~  163 (218)
T PRK07164        104 ITPW-YP----PG-QTPGEKEFYENNK---I-------NKN--FNKIH--LGSSNSFIFDLDKLKIIKDFIFVSFFDMEA  163 (218)
T ss_pred             CCcC-CC----cc-cCCCCcccccchh---h-------hcC--CcEEE--EEeCCccCCCHHHHHHHHhcCCCcEEEchH
Confidence            2222 10    11 1111111111110   1       112  44554  3589999764 445556877 999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ++.+++|+.+++|+++|++|||.+.      +..+++++.+...+++....+++.++|+++
T Consensus       164 aAiaqv~~~~~vpf~~ir~ISD~~~------~~~~~~~~~~~~~~a~~~~~~~v~~~l~~~  218 (218)
T PRK07164        164 FALAQVCFKNKVKFYCIKYVSDFIE------NNSDIEIVNNNIKKGSKKALEFIFELLENI  218 (218)
T ss_pred             HHHHHHHHHcCCCEEEEEEEccCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999982      235676666677777777788888888764

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.2e-18  Score=166.34  Aligned_cols=106  Identities=35%  Similarity=0.495  Sum_probs=82.8

Q ss_pred             EEee---cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCC-ccCcc--ccchhhcccccccccc
Q psy9643           3 VYYI---DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG-IIPLY--PNDKFEINKLNVFVPL   75 (412)
Q Consensus         3 ~~~~---d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~   75 (412)
                      |||+   || +|+||+|||||||||||++|||||+++|||+||||+|||++++|.. +..++  .|+.+.-|++.     
T Consensus       132 vvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~-----  206 (394)
T COG0050         132 VVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD-----  206 (394)
T ss_pred             EEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc-----
Confidence            6777   99 6899999999999999999999999999999999999999877543 45555  37888888877     


Q ss_pred             ccccchhhhhccccCCCC-----------ee----eEEeeecccCCChhhhhH
Q psy9643          76 INSRRGYAEKQVYSRDKP-----------HC----NIGTIGHVDHGKTTLTAA  113 (412)
Q Consensus        76 ~~~~~~~~~~~~~~~~k~-----------~~----ni~~igHVD~GKSTl~~~  113 (412)
                      .+++|++|+|.+++-.-.           .+    -+-++|.-+.-|||.+|-
T Consensus       207 ~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgv  259 (394)
T COG0050         207 IDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGV  259 (394)
T ss_pred             ccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhH
Confidence            888899999998853321           12    133556556667776643

>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]

Probab=99.71  E-value=5e-16  Score=147.97  Aligned_cols=194  Identities=13%  Similarity=0.157  Sum_probs=147.1

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.+.+..+++.+...        +.++.+   ..++..++++.+|+++.||++.+.+.+||+++.++.++++.  +
T Consensus        34 ~~~~g~~~~~~vvl~~sgI--------G~v~aA~~t~~~i~~~~p~~iI~~G~aGgl~~~~~iGDvvvs~~~~~~D~--d  103 (234)
T COG0775          34 KFYTGQMAGKEVVLVLSGI--------GKVNAALTTTLLLAKFSPDAVINTGSAGGLVSSLAIGDVVVSDALSYHDV--D  103 (234)
T ss_pred             EEEEEEEcCeEEEEEEeCc--------CHHHHHHHHHHHHHhcCCCEEEEeeeccCcCCCCccccEEEEhhHhhhhc--c
Confidence            6888999999988876432        334443   36888999999999999999999999999999999999876  2


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHH-H-HHHHc-CCcEEeCc
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAEL-N-MLRIC-GVDAVGMS  341 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~-~-~~~~~-Gad~VgMe  341 (412)
                      .+++. ... ...+...+..+..++.+.....+++.+.+..  .+.|.+  .+|++|.+..+. . ..+.+ +|.+|+||
T Consensus       104 ~~~~~-~~~-g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~Gli--~tgd~fv~~~~~~~~~~~~~~~a~aveME  177 (234)
T COG0775         104 LTAFG-YEI-GQIPTGEPALFEADEELLDLAGEVAGEGKLR--LRTGLI--VTGDRFVTLGEPVAKLRKAFPDALAVEME  177 (234)
T ss_pred             ccccc-ccC-CCCCCccchhccccHHHHHHHHHHHHhcCcc--eeEEEE--EcchhhhhcchhHHHHHHHCCCcEEEEec
Confidence            33332 100 0001011133567899999999998886776  899965  689999876653 3 44456 99999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      +++.+++|+.+++||..|+.|||.++.   ...+.+++++++.+.+.+.   .++.++++.|
T Consensus       178 ~aaia~v~~~~~vP~~~ir~ISD~a~~---~~~~~~~~~f~~~aa~~s~---~~~~~~~~~l  233 (234)
T COG0775         178 GAAIAQVCYRFGVPFLVLRAISDIADG---GADPVSFDEFLAEAAKQSA---LVLLSALEKL  233 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEEEeccCCCC---cCCcccHHHHHHHHHHHHH---HHHHHHHHhc
Confidence            999999999999999999999999953   2345899999988866554   4566666654

>PLN02584 5'-methylthioadenosine nucleosidase

Probab=99.71  E-value=2.4e-16  Score=151.45  Aligned_cols=193  Identities=13%  Similarity=0.189  Sum_probs=137.4

Q ss_pred             eEEEEeeCCeEEEEec-ceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCC-CCCCccHHHHHHHHhhccC
Q psy9643         188 QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNP-DYEVGDIMIIKDHINLMGF  262 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~-~~~~Gd~vi~~d~i~~~~~  262 (412)
                      .++.|.++|++|++.. ||.-+|-=-.++.+|.+   .+++..++++.||++|.+|++++ ++++||+++++..++++. 
T Consensus        45 ~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~~~li~~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~~D~-  123 (249)
T PLN02584         45 VRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDR-  123 (249)
T ss_pred             eEEEEEECCEEEEEEecCCccccccCccCHHHHHHHHHHHHHhcCCCEEEEEecccCcCcCCCCcCCEEEECeeEeccc-
Confidence            7889999999988775 43322210013555554   47888999999999999999996 799999999999887765 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC-HHHHHHHHHcCCcEEeCc
Q psy9643         263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET-VAELNMLRICGVDAVGMS  341 (412)
Q Consensus       263 ~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT-~AE~~~~~~~Gad~VgMe  341 (412)
                        +.+..+..  .++....+  ...++.+.       ..+  +  ++.|.+  ++|++|.+ ..+.+.++++|+++|+||
T Consensus       124 --~~~~~~~~--~~~~g~~~--~~~~~~l~-------~~~--~--~~~G~i--~SgD~F~~~~~~~~~~~~~~a~~vDME  184 (249)
T PLN02584        124 --RIPIPVFD--KYGVGTRD--AFPTPNLI-------KAL--G--LKEGVL--STGNSLDMTEQDEESIKANDATVKDME  184 (249)
T ss_pred             --CCCccccc--ccccCccc--cCCCHHHH-------hhC--C--CeEEEE--EEeCEEeCCHHHHHHHHHcCCcEEech
Confidence              22221100  01111111  01123332       222  3  577865  68999954 444557788999999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE  405 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~  405 (412)
                      +++.+++|+.+|+|+++|+.|||.+.    .+. .+++++.+....++..+.+.+..++.-+..
T Consensus       185 ~aAia~va~~~gvp~~~IR~ISD~~~----~~~-~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~  243 (249)
T PLN02584        185 GAAVAYVADLLKVPAIFVKAVTDIVD----GDK-PTAEEFLENLSAAAAALQGAVPKVLDFISG  243 (249)
T ss_pred             HHHHHHHHHHhCCCEEEEEEEeecCC----CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999874    233 378888888888888888888888876654

>PRK13374 purine nucleoside phosphorylase; Provisional

Probab=99.70  E-value=3.5e-16  Score=149.00  Aligned_cols=157  Identities=17%  Similarity=0.204  Sum_probs=121.2

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH---HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM---PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~---~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|++..+..        +.++.   ..+++..+|++.||++|.||++++++++||+++++... ++.  +
T Consensus        47 ~~~~G~~~g~~v~v~~~Gi--------G~~~Aai~~~eLi~~~g~~~iI~~GtaG~l~~~l~~GDvVI~~~a~-~d~--~  115 (233)
T PRK13374         47 FGFTGTYKGKKVSVMGHGM--------GIPSMVIYVHELIATFGVKNIIRVGSCGATQDDVKLMDVIIAQGAS-TDS--K  115 (233)
T ss_pred             EEEEEEECCEEEEEEeCCC--------CHhHHHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCEEEEeeeE-ecC--c
Confidence            6788999999999876432        33333   33677789999999999999999999999999998654 211  0


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-H-HHHHHHcCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-E-LNMLRICGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E-~~~~~~~Gad~VgMe~  342 (412)
                      .+.+      .+.+  .++..+.|+.|.+.+.+.+++.+++  ++.|..  ++|++|-... + .+.++++|+++|+||+
T Consensus       116 ~~~~------~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~i--~T~D~F~~~~~~~~~~~~~~g~~~vEME~  183 (233)
T PRK13374        116 TNRI------RFSG--HDFAAIADYQLLEKAVETAREKGVP--VKVGNV--FSSDLFYDPDEDAIEAMERFGILGVDMEV  183 (233)
T ss_pred             hhhh------ccCC--CCcCCCCCHHHHHHHHHHHHHcCCC--eEEEEE--EEcCcccCCChHHHHHHHHcCCeEEehhH
Confidence            1100      0000  1233456889999999999999998  899965  5899986433 3 4577789999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      ++.+++|+.+|+|+++|+.|||.+.
T Consensus       184 aAl~~va~~~gip~~~i~~isD~~~  208 (233)
T PRK13374        184 AGLYGLAAYLGAEALAILTVSDHII  208 (233)
T ss_pred             HHHHHHHHHcCCCEEEEEEEEeeec
Confidence            9999999999999999999999985

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.70  E-value=6.8e-18  Score=174.90  Aligned_cols=150  Identities=23%  Similarity=0.337  Sum_probs=99.1

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      ..+|||+||+++||||||||||+++|   |+. |.++.+..+++++          .++|++|..++|+++||++.+++.
T Consensus         2 ~~~k~~~ni~i~Ghvd~GKSTL~g~L---l~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~   78 (447)
T PLN00043          2 GKEKVHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW   78 (447)
T ss_pred             CCCCceEEEEEEecCCCCHHHHHHHH---HHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE
Confidence            45899999999999999999999999   776 6666655554432          137899999999999999976554


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeec-CCCCccccH-HHHHHHHcCCCE
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYE-GYPLWKCAM-PIRVMKLVGVTH  231 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~ye-g~~~~~v~~-~i~ll~~lGv~~  231 (412)
                      .+.          + +...++++|+|||.+   +++.|.... ..++++......+| |........ ...+++.+|+++
T Consensus        79 ~~~----------~-~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~  147 (447)
T PLN00043         79 KFE----------T-TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ  147 (447)
T ss_pred             Eec----------C-CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCc
Confidence            331          1 233578999999977   666665332 22333322211122 111111111 237888999988


Q ss_pred             EE-EEeccCCCCCCCCCccHHH
Q psy9643         232 LL-ATNAAGGLNPDYEVGDIMI  252 (412)
Q Consensus       232 II-~~n~~G~l~~~~~~Gd~vi  252 (412)
                      +| ++||+|..+.++...++-.
T Consensus       148 iIV~vNKmD~~~~~~~~~~~~~  169 (447)
T PLN00043        148 MICCCNKMDATTPKYSKARYDE  169 (447)
T ss_pred             EEEEEEcccCCchhhhHHHHHH
Confidence            55 6899997655555555543

>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD)

Probab=99.68  E-value=1.3e-15  Score=145.00  Aligned_cols=177  Identities=18%  Similarity=0.201  Sum_probs=130.7

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      ..+.|.++|+++.+.++..-.     |+.....-+++..+|++.||.+|.||++++++++||+++.+..+...+.   ++
T Consensus        43 ~~~~G~~~g~~v~v~~~G~G~-----~~aai~~~eli~~~~~~~iI~~Gt~G~l~~~~~~GdvvI~~~a~~~~~~---~~  114 (232)
T TIGR00107        43 LGFTGTYKGKKISVMGHGMGI-----PSISIYVYELIKFYEVKTIIRIGSCGAIRPDVKLRDVIIAMGASTDSKY---NR  114 (232)
T ss_pred             EEEEEEECCEEEEEEeCCCCH-----hHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEECceeccCCc---ch
Confidence            567899999999987644321     2211122367777999999999999999999999999999887765431   11


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC-HHH-HHHHHHcCCcEEeCchhHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET-VAE-LNMLRICGVDAVGMSTVHE  345 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT-~AE-~~~~~~~Gad~VgMe~~pE  345 (412)
                      .      .+.+  .+.....|++|.+.+.+.+++.+++  ++.|..  .+|+.|-. ..+ .+.++++|+.+|+||+++.
T Consensus       115 ~------~~~~--~~~~~~ad~~l~~~l~~~~~~~~~~--~~~G~~--~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal  182 (232)
T TIGR00107       115 V------RFVE--VDFAAIADFELVELAYQTAKALGLD--FHVGNV--FSADAFYQPDKDVFDLMAKYGILAVEMEAAAL  182 (232)
T ss_pred             h------hcCC--CCcCccCCHHHHHHHHHHHHHCCCC--eEEEEE--eEcCcccCCCHHHHHHHHHcCCeEEehhHHHH
Confidence            0      0111  1233456999999999999999988  999965  57888753 333 4677889999999999999


Q ss_pred             HHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHH
Q psy9643         346 VITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLR  388 (412)
Q Consensus       346 a~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~  388 (412)
                      +++|+.+|+|+++|+.|||....    ....+.++..+..++.
T Consensus       183 ~~va~~~~~~~~~i~~vsd~~~~----~~~~~~~~~~~~~~~~  221 (232)
T TIGR00107       183 YANAAELGAKALTILTVSDHLVT----HEALTAEERQTTFKDM  221 (232)
T ss_pred             HHHHHHcCCcEEEEEEEEeeccc----CCCCChHHHHHHHHHH
Confidence            99999999999999999998842    2334445544444333

Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.

>PRK05819 deoD purine nucleoside phosphorylase; Reviewed

Probab=99.67  E-value=2.7e-15  Score=143.13  Aligned_cols=157  Identities=19%  Similarity=0.214  Sum_probs=121.7

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      ..+.|.++|++|.+.++..        +.++..   -+++..+|++.||.+|.+|++++++++||+++++..++..+   
T Consensus        46 ~~~~G~~~g~~v~v~~tGi--------G~~~aai~~~eLi~~~~~~~iI~~GtaG~l~~~l~iGDvVI~~~a~~~~~---  114 (235)
T PRK05819         46 LGFTGTYKGKRVSVMGTGM--------GIPSISIYANELITDYGVKKLIRVGSCGALQEDVKVRDVVIAMGASTDSN---  114 (235)
T ss_pred             EEEEEEECCEEEEEEecCC--------ChhHHHHHHHHHHHhcCCcEEEEEecccCCCCCCCCCCEEEEceeEecCC---
Confidence            5688999999999876443        233332   36777799999999999999999999999999987654222   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC-HHH-HHHHHHcCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET-VAE-LNMLRICGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT-~AE-~~~~~~~Gad~VgMe~  342 (412)
                      .+.+      .+.+  ..+....|+.|.+.+.+.+++.+++  ++.|..  .+++.|-. ..+ .+.++++|+.+|+||+
T Consensus       115 ~~~~------~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~v--~T~D~f~~~~~~~~~~~~~~g~~~vEME~  182 (235)
T PRK05819        115 VNRI------RFKG--HDFAPIADFDLLRKAYDAAKEKGIT--VHVGNV--FSADLFYNPDPEMFDVLEKYGVLGVEMEA  182 (235)
T ss_pred             cccc------ccCC--CCcCccCCHHHHHHHHHHHHHCCCc--EEEEEE--EecCcccCCCHHHHHHHHHcCCeEEeccH
Confidence            1110      0111  1122345899999999999999988  899965  57888844 332 4577889999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      ++.+++|+.+|+|+++|++|||...
T Consensus       183 aAva~va~~~~ip~~~i~~isd~~~  207 (235)
T PRK05819        183 AALYGLAAKYGVKALTILTVSDHIV  207 (235)
T ss_pred             HHHHHHHHHhCCCEEEEEEEeeecc
Confidence            9999999999999999999999985

>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]

Probab=99.67  E-value=1.9e-15  Score=138.94  Aligned_cols=183  Identities=17%  Similarity=0.173  Sum_probs=142.3

Q ss_pred             EEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCC
Q psy9643         190 VFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLL  269 (412)
Q Consensus       190 ~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~  269 (412)
                      ++|+++|+.|-++-..+..     |+-..|.-.|++.+||+.||.+|+||++++++..+|+|+..........       
T Consensus        49 fTGtYKGk~iSvmg~GmGi-----pS~sIY~~ELi~~y~Vk~iIRvGt~Gal~~~v~l~DvVia~~A~tds~~-------  116 (236)
T COG0813          49 FTGTYKGKKISVMGHGMGI-----PSISIYSRELITDYGVKKIIRVGTCGALSEDVKLRDVVIAQGASTDSNV-------  116 (236)
T ss_pred             ccceecCcEEEEEEecCCC-----ccHHHHHHHHHHHhCcceEEEEEccccccCCcccceEEEeccccCcchh-------
Confidence            4578889988776322222     5666777789999999999999999999999999999987654433220       


Q ss_pred             CCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCH-HH-HHHHHHcCCcEEeCchhHHHH
Q psy9643         270 GVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV-AE-LNMLRICGVDAVGMSTVHEVI  347 (412)
Q Consensus       270 g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~-AE-~~~~~~~Gad~VgMe~~pEa~  347 (412)
                        +...|.+  .+.....|++|...+.++|+++|++  +|.|...  +-+.|-++ -+ ...|+++|..+|+||+++...
T Consensus       117 --~~~~f~~--~df~~~ad~~Ll~~a~~~A~e~gi~--~hvgnv~--ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY~  188 (236)
T COG0813         117 --NRIRFKP--HDFAPIADFELLEKAYETAKELGID--THVGNVF--SSDLFYNPDTEMFDLMAKYGVLAVEMEAAALYA  188 (236)
T ss_pred             --hhcccCc--ccccccCCHHHHHHHHHHHHHhCCc--eeeeeee--eeecccCCCHHHHHHHHHhCCcEEEeeHHHHHH
Confidence              1111211  1234567999999999999999999  9999875  45666432 33 457788999999999999999


Q ss_pred             HHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9643         348 TAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMV  396 (412)
Q Consensus       348 ~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll  396 (412)
                      +|.++|.+.++|.+|||.-    ..++.++.+|....+.++.+...+.+
T Consensus       189 ~A~~~~~~Al~ilTVSD~l----~t~E~~s~eeRq~tF~~M~~iaLe~~  233 (236)
T COG0813         189 VAAEYGKKALTILTVSDHL----VTGEETSAEERQNTFNDMIEIALESA  233 (236)
T ss_pred             HHHHhCcceEEEEEeeccc----cCcccCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998    46788999999988888876554443

>TIGR01718 Uridine-psphlse uridine phosphorylase

Probab=99.65  E-value=5.1e-15  Score=142.05  Aligned_cols=154  Identities=15%  Similarity=0.251  Sum_probs=118.0

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|++.++..        +..+..   -+++ .+|++.||++|+||++++++++||+++.+..+.+++   
T Consensus        44 ~~~~G~~~g~~v~v~~~Gi--------G~~~aai~~~eLi-~~g~~~iIr~GtaG~l~~~~~~GDiVI~~~a~~~Dg---  111 (245)
T TIGR01718        44 VTYRGELDGKPVIVCSTGI--------GGPSTAIAVEELA-QLGARTFIRVGTTGAIQPHINVGDVLITTAAVRLDG---  111 (245)
T ss_pred             EEEEEEECCEEEEEEcCCC--------CHHHHHHHHHHHH-HhCCCEEEEeeccccCCCCCCCCCEEEeCceecCCC---
Confidence            5688999999999986443        233332   2455 489999999999999999999999999999988775   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-----------H----HHH
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-----------E----LNM  329 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-----------E----~~~  329 (412)
                      . ++.      +.+  ..+....|+++.+.+.++++++|++  ++.|+.  .++|+|-+..           |    .+.
T Consensus       112 ~-~~~------y~~--~~~p~~~d~~l~~~l~~~~~~~~~~--~~~G~v--~T~D~F~~~~~~~~~~~~~~~~~~~~~~~  178 (245)
T TIGR01718       112 A-SLH------YAP--LEFPAVADFEVTTALVEAAESIGVR--HHVGVV--ASSDTFYPGQERDTYSGRVVRHFKGSMEA  178 (245)
T ss_pred             c-ccc------cCC--CCcCCCCCHHHHHHHHHHHHHcCCC--eEEEEE--EECCcCcCCCCccccccccchhHHHHHHH
Confidence            1 110      000  1111223889999999999999988  999975  5899986421           1    234


Q ss_pred             HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      |+.+|+++||||+++.+++|+.+|++.++++++.+..
T Consensus       179 ~~~~g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~  215 (245)
T TIGR01718       179 WQAMGVLNYEMESATLFTLCSSQGLRAGMVAGVIVNR  215 (245)
T ss_pred             HHHcCceEehhhHHHHHHHHHHcCCcEEEEEEEEecc
Confidence            5567999999999999999999999999999988775

Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.

>PRK07115 AMP nucleosidase; Provisional

Probab=99.65  E-value=2.5e-15  Score=144.93  Aligned_cols=150  Identities=19%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCC
Q psy9643         196 GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDR  275 (412)
Q Consensus       196 g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~  275 (412)
                      |.+|.+.++..-.     |+... .+..+..+|++.||.+|+||++++++++||+|+++..+..++   .++.      +
T Consensus        59 g~~vsv~~~GIG~-----psAai-~~eeL~~~g~~~iIr~GtaGaL~~~l~~GDiVI~t~avr~dg---ts~~------Y  123 (258)
T PRK07115         59 AEGITIINFGMGS-----PNAAT-IMDLLSALNPKAVLFLGKCGGLKSKYQVGDYFLPIAAIRGEG---TSDD------Y  123 (258)
T ss_pred             CCEEEEEeCCCCH-----HHHHH-HHHHHHHcCCCEEEEEecccCcCCCCCCCCEEEEEEEEEcCC---cccc------c
Confidence            7777777643321     12111 235667789999999999999999999999999998877654   1110      0


Q ss_pred             CCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCc-c-CCHHHH-HHHHHcCCcEEeCchhHHHHHHHHc
Q psy9643         276 FGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPN-F-ETVAEL-NMLRICGVDAVGMSTVHEVITAHHC  352 (412)
Q Consensus       276 ~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~-f-eT~AE~-~~~~~~Gad~VgMe~~pEa~~A~~~  352 (412)
                         .........|+.|.+.+.+++++.|++  ++.|+.  .++++ | ++..+. +.|+++|+++|+||+++.+++|+.+
T Consensus       124 ---~p~~~pa~~d~~l~~~l~~~~~~~~~~--~~~G~v--~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~~  196 (258)
T PRK07115        124 ---FPPEVPALPNFVLQKAVSSIIRDKGLD--YWTGTV--YTTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFAN  196 (258)
T ss_pred             ---cCCccCcCCCHHHHHHHHHHHHHcCCC--eEEEEE--EecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHHc
Confidence               001222334678999999999999998  999976  46775 4 455554 4677899999999999999999999


Q ss_pred             CCcEEEEEeeeccCC
Q psy9643         353 GMTVTAFSLITNKCV  367 (412)
Q Consensus       353 Gi~~~~i~~VSd~a~  367 (412)
                      |+|+++|+++||...
T Consensus       197 gv~~~~i~~isD~~~  211 (258)
T PRK07115        197 NIPTGALLLISDLPL  211 (258)
T ss_pred             CCcEEEEEEEecccC
Confidence            999999999999983

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.64  E-value=1.2e-16  Score=165.67  Aligned_cols=152  Identities=23%  Similarity=0.359  Sum_probs=98.1

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccc
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLST  158 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~  158 (412)
                      .+|+++||+++||||||||||+++|   ++. |.++.+..+++++          .++|++|..++|+++|+++.+++..
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~L---l~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~   79 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK   79 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHH---HHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE
Confidence            4789999999999999999999999   665 6666555555433          2468999999999999999665533


Q ss_pred             ccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCEE
Q psy9643         159 IADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTHL  232 (412)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~I  232 (412)
                      +          .+ +-..++++|+|||.+   +++.|... +..++++......+| |.... +..-.+.+++.+|++++
T Consensus        80 ~----------~~-~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~i  148 (446)
T PTZ00141         80 F----------ET-PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQM  148 (446)
T ss_pred             E----------cc-CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeE
Confidence            2          22 223578999999987   56555432 222333221111121 11111 11112378999999986


Q ss_pred             -EEEeccCCCCCCCCCccHHHHHH
Q psy9643         233 -LATNAAGGLNPDYEVGDIMIIKD  255 (412)
Q Consensus       233 -I~~n~~G~l~~~~~~Gd~vi~~d  255 (412)
                       +++|++|....++...++-.+.+
T Consensus       149 iv~vNKmD~~~~~~~~~~~~~i~~  172 (446)
T PTZ00141        149 IVCINKMDDKTVNYSQERYDEIKK  172 (446)
T ss_pred             EEEEEccccccchhhHHHHHHHHH
Confidence             57999995444455556554433

>TIGR03664 fut_nucase futalosine nucleosidase

Probab=99.63  E-value=2.2e-15  Score=142.57  Aligned_cols=166  Identities=17%  Similarity=0.204  Sum_probs=121.0

Q ss_pred             EEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCC
Q psy9643         190 VFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN  266 (412)
Q Consensus       190 ~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~  266 (412)
                      +.|.++|.++++..+.        ++.++..   .+++..++++.||++|.+|++++++++||+++.+..++++... .+
T Consensus        22 ~~G~~~g~~v~v~~tG--------iG~v~aA~~~~~~i~~~~~~~ii~~G~aG~l~~~~~~GDvvv~~~~~~~d~g~-~~   92 (222)
T TIGR03664        22 YAGSVGGAGFDVLVTG--------VGPVNAAAATARLLARAPYELVINAGIAGGFPGSAAVGDLVVADSEIAADLGA-ET   92 (222)
T ss_pred             cceeeCCeeEEEEECC--------cCHHHHHHHHHHHHHhCCCCEEEEEEEcccCCCCCCCcCEEEeeeEEEcccCc-cC
Confidence            6688889888776532        2344443   3577889999999999999999999999999999877665310 01


Q ss_pred             CCCCCCCCCCCC-CCC----C--CcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-H-HHHHHcCCcE
Q psy9643         267 PLLGVNEDRFGP-RFP----P--MNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-L-NMLRICGVDA  337 (412)
Q Consensus       267 pl~g~~~~~~g~-~~~----~--~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~-~~~~~~Gad~  337 (412)
                      +.........+. .++    .  ...+.|+.|.+.+.+.++..+++  ++.|.+  ++|++|.+.++ . +..+++|+++
T Consensus        93 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~i--~T~d~~~~~~~~~~~l~~~~~a~a  168 (222)
T TIGR03664        93 PEGFLPLEALGFPQLPGGGSSYFNRIPLDPDLVERAVQLLRALGLP--VARGPF--LTVSTVSGTAARAEALARRFGAVA  168 (222)
T ss_pred             CCCccccccCCCCcCCCCCccccccccCCHHHHHHHHHHhhccCcc--eeEeee--eeecceeCCHHHHHHHHHhcchHH
Confidence            110000000010 000    0  12456999999999999998888  899965  57888865444 3 3567789999


Q ss_pred             EeCchhHHHHHHHHcCCcEEEEEeeeccCCC
Q psy9643         338 VGMSTVHEVITAHHCGMTVTAFSLITNKCVT  368 (412)
Q Consensus       338 VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~  368 (412)
                      |+||+++.+++|+.+|+|+++||.|||.+..
T Consensus       169 veMEsaava~va~~~~vP~~~IR~ISD~~~~  199 (222)
T TIGR03664       169 ENMEGFAVALAALRYGVPFLELRGISNLVGP  199 (222)
T ss_pred             HHhhHHHHHHHHHHhCCCEEEEEeeccCCCC
Confidence            9999999999999999999999999999953

This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.

>PRK07077 hypothetical protein; Provisional

Probab=99.61  E-value=8.1e-15  Score=139.46  Aligned_cols=150  Identities=17%  Similarity=0.176  Sum_probs=115.6

Q ss_pred             HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH
Q psy9643         222 RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD  301 (412)
Q Consensus       222 ~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~  301 (412)
                      .++...|++.||+++.+|+++|++++||+|+.+..++..                +      .+++|+.|.+.+.+++..
T Consensus        47 ~~~~~~~~~~vIs~G~AGgL~p~l~vGDvVva~~v~~~~----------------g------~~~~d~~l~~~l~~~l~~  104 (238)
T PRK07077         47 AAFDARGCAGIVSFGVAGGLDPDLAPGDLVVATAVDAPF----------------G------RVDTDARWSARLAAALEL  104 (238)
T ss_pred             HHHHhcCCCEEEEEEeccccCCCCCCCcEEEEeeeecCC----------------C------cCcCCHHHHHHHHHHHHh
Confidence            455578999999999999999999999999999765321                1      234688899988887765


Q ss_pred             cC--CCcceeeceEEEEecCccCCHH-HHHH-HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCC--------
Q psy9643         302 LN--MSSIVKEGVYSVIGGPNFETVA-ELNM-LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTD--------  369 (412)
Q Consensus       302 ~g--~~~~~~~Gvy~~~~GP~feT~A-E~~~-~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~--------  369 (412)
                      ..  .+  ++.|.+  ++|++|.+.. +.+. .+++|+.+|+||+++.+++|+++|+||++||.|||.+...        
T Consensus       105 ~~~~~~--v~~G~i--~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~~~LP~~~~~~  180 (238)
T PRK07077        105 TPVARR--VVRGGL--AGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAWRTLPAAATAG  180 (238)
T ss_pred             ccCCCc--eEEEEE--EecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccCccCchhHHhh
Confidence            43  34  888965  5899997544 4444 4568999999999999999999999999999999998511        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9643         370 YDDHAEANHEEVIQAGKLRGPMIKSMVT  397 (412)
Q Consensus       370 ~~~~~~~s~~ev~~~~~~~~~~~~~ll~  397 (412)
                      -+.+..+++..++....+....+..|+.
T Consensus       181 ~~~~g~~~~~~~l~~l~r~P~~i~~Ll~  208 (238)
T PRK07077        181 LRDDGSTDILPILRGLARQPSQLGALLQ  208 (238)
T ss_pred             cCCCcCcCHHHHHHHHHhChHHHHHHHH
Confidence            0145678888888776666655555543

>PRK11178 uridine phosphorylase; Provisional

Probab=99.60  E-value=4.5e-14  Score=135.94  Aligned_cols=155  Identities=15%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH--HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP--IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~--i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      .++.|.++|.+|++.++..        +.++..  +..+..+|++.||++|.+|++++++++||+|+++..+++++   .
T Consensus        49 ~~~~G~~~g~~v~v~~~Gi--------G~~~Aa~~~~eLi~~g~~~iI~~GtaG~l~~~l~~GDvVI~~~a~~~Dg---~  117 (251)
T PRK11178         49 TSWRAELDGKPVIVCSTGI--------GGPSTSIAVEELAQLGVRTFLRIGTTGAIQPHINVGDVLVTTASVRLDG---A  117 (251)
T ss_pred             EEEEEEEcCEEEEEEecCC--------CHHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEecceecCCC---C
Confidence            6888999999999986443        333332  23344589999999999999999999999999999998876   2


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCH----------------HHHHH
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV----------------AELNM  329 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~----------------AE~~~  329 (412)
                      +..       +.+.  ......|.++...+.+.+++++++  ++.|+.  .+|++|-+.                ...+.
T Consensus       118 s~~-------y~~~--~~p~~~~~~~~~~L~~~~~~~~~~--~~~G~i--~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~  184 (251)
T PRK11178        118 SLH-------FAPL--EFPAVADFECTTALVEAAKSIGAT--THVGVT--ASSDTFYPGQERYDTYSGRVVRRFKGSMEE  184 (251)
T ss_pred             ccc-------cCCC--CcCCCCCHHHHHHHHHHHHHcCCC--EEEEEE--eecCcccCCCCccccccccchhhHHHHHHH
Confidence            211       1111  111223778888888888888988  899965  589998531                22345


Q ss_pred             HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      |++.|+.+|+||+++.+++|+.+|++.++++.+....
T Consensus       185 ~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~r  221 (251)
T PRK11178        185 WQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNR  221 (251)
T ss_pred             HHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEecc
Confidence            6677999999999999999999999999998887765

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.60  E-value=8.8e-16  Score=154.40  Aligned_cols=133  Identities=25%  Similarity=0.455  Sum_probs=96.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      +..||+||+|||||||||+.+|+++-  |.     +..-++..+.+||....|+++|||+          +.....+.|.
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQS--Gt-----f~~~e~v~ERvMDSnDlEkERGITI----------LaKnTav~~~   66 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQS--GT-----FREREEVAERVMDSNDLEKERGITI----------LAKNTAVNYN   66 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhc--cc-----cccccchhhhhcCccchhhhcCcEE----------EeccceeecC
Confidence            47899999999999999999994332  22     3333455667899999999999999          2344567777


Q ss_pred             CCCCccccCCCCCce-----eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCC
Q psy9643         173 TIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV  247 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~  247 (412)
                      +. .++++|+|||+|     +.+.+.++|.-+++     -+||| ++.+..|...-+-.+|.+.|+++||.+-  |...|
T Consensus        67 ~~-~INIvDTPGHADFGGEVERvl~MVDgvlLlV-----DA~EG-pMPQTrFVlkKAl~~gL~PIVVvNKiDr--p~Arp  137 (603)
T COG1217          67 GT-RINIVDTPGHADFGGEVERVLSMVDGVLLLV-----DASEG-PMPQTRFVLKKALALGLKPIVVINKIDR--PDARP  137 (603)
T ss_pred             Ce-EEEEecCCCcCCccchhhhhhhhcceEEEEE-----EcccC-CCCchhhhHHHHHHcCCCcEEEEeCCCC--CCCCH
Confidence            64 579999999998     56666777766665     34444 3333444447777899999999999974  45555


Q ss_pred             ccHH
Q psy9643         248 GDIM  251 (412)
Q Consensus       248 Gd~v  251 (412)
                      -.+|
T Consensus       138 ~~Vv  141 (603)
T COG1217         138 DEVV  141 (603)
T ss_pred             HHHH
Confidence            5443

>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative

Probab=99.59  E-value=9.2e-15  Score=136.30  Aligned_cols=164  Identities=13%  Similarity=0.056  Sum_probs=117.9

Q ss_pred             CccccHH---HHHHHHc-----CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9643         214 LWKCAMP---IRVMKLV-----GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNK  285 (412)
Q Consensus       214 ~~~v~~~---i~ll~~l-----Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~  285 (412)
                      .++||++   .+++..+     +++.||++|.+|++  ++++||+++.+++++++.  +.++|..+    +|. .+.+..
T Consensus        38 IGKVNAA~~~~~lI~~f~~~~~~pd~VIN~GvAG~~--~~~igDIVi~t~~~~hDv--d~t~~gy~----~Gq-iP~~~~  108 (212)
T TIGR01705        38 VGPVEAAIRVGAELAGLDAADALPDLVVSLGSAGSR--TLEQTEIYQAVSVSYRDI--DASAFGFE----KGA-TPFLDL  108 (212)
T ss_pred             ccHHHHHHHHHHHHHhhhhccCCCCEEEEecccCCC--CCccCCEEEEeeEEEcCc--CccccCCc----ccc-CCCCCC
Confidence            3566664   3677764     89999999999995  578999999999999885  34444211    121 122223


Q ss_pred             cccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeecc
Q psy9643         286 AYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK  365 (412)
Q Consensus       286 ~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~  365 (412)
                      +.+..|.+.+.+.+..  .  ..+.|.+  ++|++|         +.+++++|+||+++.+++|+.+|+||++||.|||.
T Consensus       109 ~~~~~l~~~~~~~~~~--~--~~~~g~~--vSgd~f---------~~~~a~~vdME~aAia~vc~~~~vpf~~iR~ISD~  173 (212)
T TIGR01705       109 PAEAALPFRIPDIAEA--R--LSTGGAI--ISGAAY---------DAIAADMVDMETFACLRACQLFDVPLIGLRGISDG  173 (212)
T ss_pred             CchhhHHHHHHHHHhc--c--CcceeEE--EECcch---------hhCCceEEechHHHHHHHHHHcCCCEEEEEEEecC
Confidence            5677888777766543  1  2556754  689887         35699999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643         366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ  407 (412)
Q Consensus       366 a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~  407 (412)
                      +++   +....+++++++.+.+.+   .+++.++++.+....
T Consensus       174 a~~---~~~~~df~~f~~~aa~~s---a~~v~~ll~~~~~~~  209 (212)
T TIGR01705       174 AAD---LNHVDDWTAYLDIIDEKL---ADAVDRLCQAIEDGL  209 (212)
T ss_pred             CCC---ccchhhHHHHHHHHHHHH---HHHHHHHHHHHhcCc
Confidence            742   223345888877766654   467888888876543

This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.59  E-value=9.7e-16  Score=149.78  Aligned_cols=139  Identities=22%  Similarity=0.334  Sum_probs=102.9

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      .|+.+++.++||||+|||||+|||   ||+ ..+.+-....++.            -.+.+.|-+..||+-||||     
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRL---L~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITI-----   74 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRL---LYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITI-----   74 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhh---hhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceE-----
Confidence            467899999999999999999999   776 2222222222221            1378889999999999999     


Q ss_pred             cccccccCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHH
Q psy9643         158 TIADSITDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVM  224 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll  224 (412)
                             +.....|+ +.+.|-+.|+|||..   ||.+|..-. ..|+++        |+|-|.             .++
T Consensus        75 -------DVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-------------~I~  134 (431)
T COG2895          75 -------DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHS-------------FIA  134 (431)
T ss_pred             -------EEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHH-------------HHH
Confidence                   44444455 677899999999976   899997543 333333        899999             699


Q ss_pred             HHcCCCEEEE-EeccCCCCCCCCCccHHH-HHHHHhh
Q psy9643         225 KLVGVTHLLA-TNAAGGLNPDYEVGDIMI-IKDHINL  259 (412)
Q Consensus       225 ~~lGv~~II~-~n~~G~l~~~~~~Gd~vi-~~d~i~~  259 (412)
                      ..||++++++ +||++.++  |....|-. ..|+..|
T Consensus       135 sLLGIrhvvvAVNKmDLvd--y~e~~F~~I~~dy~~f  169 (431)
T COG2895         135 SLLGIRHVVVAVNKMDLVD--YSEEVFEAIVADYLAF  169 (431)
T ss_pred             HHhCCcEEEEEEeeecccc--cCHHHHHHHHHHHHHH
Confidence            9999999887 99999987  55555543 4566655

>PRK08236 hypothetical protein; Provisional

Probab=99.59  E-value=1.4e-14  Score=135.96  Aligned_cols=155  Identities=17%  Similarity=0.130  Sum_probs=114.5

Q ss_pred             HHHHHHc--CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643         221 IRVMKLV--GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI  298 (412)
Q Consensus       221 i~ll~~l--Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~  298 (412)
                      .+++..+  +++.||++|.+|++++++++||+|+.++.++++... ..|. |.. ......|....++.|+.|.+.+.+.
T Consensus        44 ~~li~~~~~~p~~vI~~GvAGgl~~~l~vGDvVva~~~~~~D~g~-~~~~-g~~-~~~~~~~~~~~~~~d~~l~~~~~~~  120 (212)
T PRK08236         44 ARALAAAAAPYDLVVSAGIAGGFPGKAEVGSLVVADEIIAADLGA-ETPD-GFL-PVDELGFGTTTIQVDPALVRQLTEA  120 (212)
T ss_pred             HHHHHHhccCCCEEEEEecccCCCCCCCCCCEEEEeeEEeccCCC-CCcc-CcC-ccccccCCcceecCCHHHHHHHHHH
Confidence            3677778  999999999999999999999999999988776310 0111 100 0001122233466799999988888


Q ss_pred             HHHcCCCcceeeceEEEEecCccCC-HHHHHHH-HHc-CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCC
Q psy9643         299 ARDLNMSSIVKEGVYSVIGGPNFET-VAELNML-RIC-GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE  375 (412)
Q Consensus       299 a~~~g~~~~~~~Gvy~~~~GP~feT-~AE~~~~-~~~-Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~  375 (412)
                      +...+++  .+.|.+  ++|++|.. .++.+.+ +++ ++.+++||+++.+++|+.+|+||+.||.|||.+..+  ..+.
T Consensus       121 l~~~~~~--~~~G~i--~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~ISD~~~~r--d~~~  194 (212)
T PRK08236        121 LLAAALG--ATAGPV--LTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAISNPVGPR--DRAA  194 (212)
T ss_pred             HHhcCCC--eEEeeE--EecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEecCCCCcc--chhc
Confidence            8777777  888965  68999974 5555544 568 899999999999999999999999999999999542  3445


Q ss_pred             CCHHHHHHH
Q psy9643         376 ANHEEVIQA  384 (412)
Q Consensus       376 ~s~~ev~~~  384 (412)
                      +....-++.
T Consensus       195 W~~~~A~~~  203 (212)
T PRK08236        195 WRIKEALAA  203 (212)
T ss_pred             cCHHHHHHH
Confidence            665554333

>TIGR01721 AMN-like AMP nucleosidase, putative

Probab=99.58  E-value=1.9e-14  Score=138.88  Aligned_cols=129  Identities=18%  Similarity=0.185  Sum_probs=103.0

Q ss_pred             HHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCC
Q psy9643         225 KLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM  304 (412)
Q Consensus       225 ~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~  304 (412)
                      ..+|++.+|.+|+||++++++++||+++++..+..++   .+ .     .+. +  +......|++|.+.+.++++++|+
T Consensus        83 ~~~G~k~iIriGtcG~L~~~i~iGDiVI~~aAir~dg---ts-~-----~Y~-p--~~~p~~~d~~l~~~l~~a~~~~g~  150 (266)
T TIGR01721        83 FLPHPKAAIMLGMCGGLRSHYQVGDYFVPVASIRGEG---TS-D-----AYF-P--PEVPALANFVVQKAITSALENKGK  150 (266)
T ss_pred             HhcCCCEEEEEEeccCCCCCCCCCCEEEEcceEeccC---ch-h-----hcC-C--cccCCCCCHHHHHHHHHHHHHcCC
Confidence            5679999999999999999999999999999886655   11 1     000 1  122334578899999999999999


Q ss_pred             CcceeeceEEEEecCccCCHHHH-HHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         305 SSIVKEGVYSVIGGPNFETVAEL-NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       305 ~~~~~~Gvy~~~~GP~feT~AE~-~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      +  ++.|+.+..++.-+++..+. +.|++.|+.+|+||+++.+++|+.+|+|+++|++|||...
T Consensus       151 ~--~~~G~v~TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ava~~~~vp~~~il~VSD~~~  212 (266)
T TIGR01721       151 D--YHIGITHTTNIRFWEFNKKFRDKLYETKAQGVEMECATLFTAGYRRNLPXGALLLISDLPL  212 (266)
T ss_pred             C--eEEEEEEcCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence            8  89998653333334666554 5678889999999999999999999999999999999984

The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.

>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated

Probab=99.57  E-value=2.1e-14  Score=134.08  Aligned_cols=160  Identities=13%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             ccccHH---HHHHHHcC-----CCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         215 WKCAMP---IRVMKLVG-----VTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       215 ~~v~~~---i~ll~~lG-----v~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      ++||.+   .+++..++     ++.||++|.+|+  +++++||+|+.++.++++.  +.+++...    .|  ..+... 
T Consensus        39 GKVnAA~~t~~lI~~f~~~~~~pd~IIn~GvAGg--~~l~igDvViat~~~~hD~--d~~~~g~~----~g--~~p~~~-  107 (212)
T PRK06026         39 GPVEAAVNLTAALARLKAAGDLPDLVVSLGSAGS--AKLEQTEVYQVSSVSYRDM--DASPLGFE----KG--VTPFLD-  107 (212)
T ss_pred             eHHHHHHHHHHHHHHhhccCCCCCEEEEecccCC--CCCccCCEEEEeeEEEcCC--CCcccCCc----cc--ccCCCC-
Confidence            556664   37888888     999999999999  5699999999999998875  33444211    11  111111 


Q ss_pred             ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                       .+.+.+...+........ ..+.|.+  ++|++|         ++++++||+||+++.+++|+.+|+||++||.|||.+
T Consensus       108 -~~~~~~l~~~~~~~~~~~-i~tgg~~--vsgd~f---------~~~~a~~vdMEgaAvAqVc~~~~vPfl~iR~ISD~a  174 (212)
T PRK06026        108 -LPATVELPLRIPGIPEAS-LSTGGNI--VSGAAY---------DAIDADMVDMETYAVLRACQAFGVPLIGLRGISDGA  174 (212)
T ss_pred             -CchhHHHHHHHhhhhccc-ceecCEE--eeCchh---------hhcCCeEEechHHHHHHHHHHcCCCEEEEEEEecCC
Confidence             123333333332211111 1233432  345443         568999999999999999999999999999999988


Q ss_pred             CCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643         367 VTDYDDHAE-ANHEEVIQAGKLRGPMIKSMVTRIVSYIGE  405 (412)
Q Consensus       367 ~~~~~~~~~-~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~  405 (412)
                      +    .++. .++++++..+.+++.   +++.++++.+..
T Consensus       175 ~----~~a~~~df~~f~~~aa~~sa---~~v~~~~~~~~~  207 (212)
T PRK06026        175 A----ELKHVGDWTEYLHVIDEKLA---GAVDRLERALED  207 (212)
T ss_pred             C----cccchhhHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence            4    3334 358888777766654   566666665543

>PLN03127 Elongation factor Tu; Provisional

Probab=99.57  E-value=7.5e-16  Score=159.67  Aligned_cols=123  Identities=36%  Similarity=0.526  Sum_probs=85.2

Q ss_pred             ccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHH-HhhhcCCCCceeEeeCcCcccccccc
Q psy9643          86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKF-LLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~-i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      .+++++|+|+||+++||||||||||+++|++.+.+ |..         ....| .+|+.++|+++|+|+.++.       
T Consensus        53 ~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~---------~~~~~~~~D~~~~E~~rGiTi~~~~-------  116 (447)
T PLN03127         53 ATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA---------KAVAFDEIDKAPEEKARGITIATAH-------  116 (447)
T ss_pred             hhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcc---------cceeeccccCChhHhhcCceeeeeE-------
Confidence            46888999999999999999999999999654322 111         01112 5888899999999996543       


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                           ..|+ +...+.++|+|||.+   +++.|.... ..++++        |+++|+             .+++.+|++
T Consensus       117 -----~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l-------------~~~~~~gip  178 (447)
T PLN03127        117 -----VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHI-------------LLARQVGVP  178 (447)
T ss_pred             -----EEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-------------HHHHHcCCC
Confidence                 2333 234578999999976   455543322 222222        344444             789999999


Q ss_pred             EE-EEEeccCCCC
Q psy9643         231 HL-LATNAAGGLN  242 (412)
Q Consensus       231 ~I-I~~n~~G~l~  242 (412)
                      .+ +++||+|.++
T Consensus       179 ~iIvviNKiDlv~  191 (447)
T PLN03127        179 SLVVFLNKVDVVD  191 (447)
T ss_pred             eEEEEEEeeccCC
Confidence            75 5699999865

>KOG0459|consensus

Probab=99.56  E-value=1.3e-15  Score=150.84  Aligned_cols=138  Identities=28%  Similarity=0.349  Sum_probs=110.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHH----------HHHhhhcCCCCceeEeeCcCcccc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIA----------KFLLDSISIRPKIGIICGSGLSTI  159 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~----------~~i~~~~~~e~~~GIi~GsGl~~~  159 (412)
                      .|.|+|++++||||+||||+.|+|   ++. |.++.|+.+++++.+          .|.+|...++|+.|-+.+-|...|
T Consensus        76 pk~hvn~vfighVdagkstigg~i---l~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F  152 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNI---LFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF  152 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCee---EEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence            577999999999999999999999   776 899999998876554          588999999999999997766433


Q ss_pred             cccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE-EEEe---------------cceeeeecCCCCccccHH
Q psy9643         160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP-IMCM---------------QGRFHYYEGYPLWKCAMP  220 (412)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~-vv~~---------------qgr~H~yeg~~~~~v~~~  220 (412)
                              +   .+..+|++.|+|||+.   +|+-|..++.. +++.               |+|+|+            
T Consensus       153 --------E---te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha------------  209 (501)
T KOG0459|consen  153 --------E---TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA------------  209 (501)
T ss_pred             --------E---ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH------------
Confidence                    1   1445799999999977   88988876543 3332               678887            


Q ss_pred             HHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHHHH
Q psy9643         221 IRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKD  255 (412)
Q Consensus       221 i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d  255 (412)
                       .+++.+||+++|+ +|+++--.-+|..-++-.+.+
T Consensus       210 -~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~  244 (501)
T KOG0459|consen  210 -MLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKE  244 (501)
T ss_pred             -HHHHhhccceEEEEEEeccCCccCcchhhHHHHHH
Confidence             8999999999886 899986555677776665543

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.54  E-value=2.1e-15  Score=157.46  Aligned_cols=127  Identities=23%  Similarity=0.332  Sum_probs=91.4

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCc
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGS  154 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~Gs  154 (412)
                      .+++|+++||+++||||||||||+++|   |+. |.+..+..+++++            .++|++|..++|+++||++.+
T Consensus        21 ~~~~~~~~~i~iiGhvdaGKSTL~~~L---L~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~   97 (474)
T PRK05124         21 AQQHKSLLRFLTCGSVDDGKSTLIGRL---LHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV   97 (474)
T ss_pred             hccccCceEEEEECCCCCChHHHHHHH---HHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe
Confidence            346799999999999999999999999   776 6666655555542            257899999999999999977


Q ss_pred             CcccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCe--EEEEe--------cceeeeecCCCCccccHHH
Q psy9643         155 GLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGI--PIMCM--------QGRFHYYEGYPLWKCAMPI  221 (412)
Q Consensus       155 Gl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~--~vv~~--------qgr~H~yeg~~~~~v~~~i  221 (412)
                      ++..+          .+ +-..+.++|+|||.+   +++.|. .+.  .++++        |++.|+             
T Consensus        98 ~~~~~----------~~-~~~~i~~iDTPGh~~f~~~~~~~l-~~aD~allVVDa~~G~~~qt~~~~-------------  152 (474)
T PRK05124         98 AYRYF----------ST-EKRKFIIADTPGHEQYTRNMATGA-STCDLAILLIDARKGVLDQTRRHS-------------  152 (474)
T ss_pred             eEEEe----------cc-CCcEEEEEECCCcHHHHHHHHHHH-hhCCEEEEEEECCCCccccchHHH-------------
Confidence            65433          11 223578899999975   444443 222  22232        344555             


Q ss_pred             HHHHHcCCCEEE-EEeccCCCC
Q psy9643         222 RVMKLVGVTHLL-ATNAAGGLN  242 (412)
Q Consensus       222 ~ll~~lGv~~II-~~n~~G~l~  242 (412)
                      .++..+|++.+| ++||+|.++
T Consensus       153 ~l~~~lg~~~iIvvvNKiD~~~  174 (474)
T PRK05124        153 FIATLLGIKHLVVAVNKMDLVD  174 (474)
T ss_pred             HHHHHhCCCceEEEEEeecccc
Confidence            788899988755 799999875

>TIGR01719 euk_UDPppase uridine phosphorylase

Probab=99.54  E-value=2.2e-13  Score=133.56  Aligned_cols=158  Identities=13%  Similarity=0.166  Sum_probs=112.1

Q ss_pred             EeeCCeEEEEecceeeeecCCCCccccHHHHHHHH---c--CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCC
Q psy9643         192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL---V--GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNN  266 (412)
Q Consensus       192 G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~---l--Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~  266 (412)
                      |.++|.+|+++.+..-.     |+...+...+++.   +  +.+.||.+|+||++  ++++||+|+.+..++++.   ..
T Consensus        73 g~ykg~~V~v~stGIG~-----psaaI~~~ELi~~~~~~~~~~~~IIRiGtaG~l--~i~iGDvVIat~a~~~d~---~~  142 (287)
T TIGR01719        73 AMYKVGPVLCVSHGMGI-----PSISIMLHELIKLLYYARCKNPTFIRIGTSGGI--GVPPGTVVVSSEAVDACL---KP  142 (287)
T ss_pred             EEEccEEEEEEecCCCc-----chHHHHHHHHHHhhhhcCCCCceEEEEeccccC--CCCCCCEEEEchhhhccc---Cc
Confidence            78899999998643321     2222223345543   3  44589999999999  699999999999887653   11


Q ss_pred             CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH--cCCCcceeeceEEEEecCccCCH-------------HH----H
Q psy9643         267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD--LNMSSIVKEGVYSVIGGPNFETV-------------AE----L  327 (412)
Q Consensus       267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~--~g~~~~~~~Gvy~~~~GP~feT~-------------AE----~  327 (412)
                      .+ +.  -.++. ...+....|++|.+.+.+++++  .|++  ++.|..  ++|++|-+.             .+    .
T Consensus       143 ~~-~~--~~~~~-~~~~~~~aD~~L~~~l~~aa~~~~~~~~--~~~G~i--~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i  214 (287)
T TIGR01719       143 EY-EQ--IVLGK-RVIRPTQLDEALVQELLLCGAEGLDEFT--TVSGNT--MCTDDFYEGQGRLDGAFCEYTEKDKMAYL  214 (287)
T ss_pred             hH-hh--cccCC-CcccCCCCCHHHHHHHHHHHHhhcCCCC--eEEEEE--ccCCcccCCCCcccccccccchhhhHHHH
Confidence            11 00  00110 0122455799999999999999  7887  899964  689999652             22    2


Q ss_pred             HHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEE-eeeccCC
Q psy9643         328 NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFS-LITNKCV  367 (412)
Q Consensus       328 ~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~-~VSd~a~  367 (412)
                      +.+..+|+.+||||+++.+++|+.+|+|+++|+ +++|...
T Consensus       215 ~~~~~~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~  255 (287)
T TIGR01719       215 RKLYALGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLE  255 (287)
T ss_pred             HHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEeeecccc
Confidence            334456999999999999999999999999998 7778763

This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.

>KOG0462|consensus

Probab=99.53  E-value=4.8e-15  Score=151.64  Aligned_cols=231  Identities=19%  Similarity=0.216  Sum_probs=135.7

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRH  167 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~  167 (412)
                      .+.++ ..|++||+|||||||||+++|+.+.  |.++....      .+.++|++..||+||||+-+          ..+
T Consensus        55 ~P~~~-iRNfsIIAHVDHGKSTLaDrLLe~t--g~i~~~~~------q~q~LDkl~vERERGITIka----------Qta  115 (650)
T KOG0462|consen   55 DPVEN-IRNFSIIAHVDHGKSTLADRLLELT--GTIDNNIG------QEQVLDKLQVERERGITIKA----------QTA  115 (650)
T ss_pred             Cchhh-ccceEEEEEecCCcchHHHHHHHHh--CCCCCCCc------hhhhhhhhhhhhhcCcEEEe----------eee
Confidence            34455 7899999999999999999995432  33333211      23578999999999999944          334


Q ss_pred             eeecCC--CCCccccCCCCCce-----eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         168 IFPYDT--IPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       168 ~~~~~~--~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                      .+.|..  ..-.+++|+|||.|     ....+..+|+.+|+-     +-||.. .++.++.+++.+.|...|.++||+|.
T Consensus       116 sify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVD-----A~qGvq-AQT~anf~lAfe~~L~iIpVlNKIDl  189 (650)
T KOG0462|consen  116 SIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVD-----ASQGVQ-AQTVANFYLAFEAGLAIIPVLNKIDL  189 (650)
T ss_pred             EEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEE-----cCcCch-HHHHHHHHHHHHcCCeEEEeeeccCC
Confidence            444543  22358999999988     445556778776663     122222 23345679999999999999999974


Q ss_pred             CCCCCCCccHHH--HHHHHhhccCCCCCCC-----CCCCCCCC----CCCCCCCcccccHHHHHHHHHHHHHcCCCc---
Q psy9643         241 LNPDYEVGDIMI--IKDHINLMGFAGNNPL-----LGVNEDRF----GPRFPPMNKAYNKQLRAATLDIARDLNMSS---  306 (412)
Q Consensus       241 l~~~~~~Gd~vi--~~d~i~~~~~~~~~pl-----~g~~~~~~----g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~---  306 (412)
                      =  ...| +.|+  +.+.+....   ...+     .|.+....    -.+.++....-|.+||.++-+..-..=.+.   
T Consensus       190 p--~adp-e~V~~q~~~lF~~~~---~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~  263 (650)
T KOG0462|consen  190 P--SADP-ERVENQLFELFDIPP---AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIAL  263 (650)
T ss_pred             C--CCCH-HHHHHHHHHHhcCCc---cceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEE
Confidence            2  2223 2222  222222221   2111     12221110    123455556678999999988765421110   


Q ss_pred             -ceeeceE-------EEEecCccCCH-------HHH--HHHH--HcCCcEEeCchhHHHHHH
Q psy9643         307 -IVKEGVY-------SVIGGPNFETV-------AEL--NMLR--ICGVDAVGMSTVHEVITA  349 (412)
Q Consensus       307 -~~~~Gvy-------~~~~GP~feT~-------AE~--~~~~--~~Gad~VgMe~~pEa~~A  349 (412)
                       .+..|++       .+.+|..|+..       .+.  -.+.  +-|-.+.+|-...|+++.
T Consensus       264 vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IG  325 (650)
T KOG0462|consen  264 VRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIG  325 (650)
T ss_pred             EEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEeccccccccccc
Confidence             1233322       23455555431       111  1222  347778888888888774

>PRK12736 elongation factor Tu; Reviewed

Probab=99.52  E-value=2.4e-15  Score=153.88  Aligned_cols=125  Identities=38%  Similarity=0.514  Sum_probs=85.5

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      |+++.++|+|+||+++||||||||||+++|++...+ |..        .....+++|+.+.|+++|+|+.++.       
T Consensus         3 ~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~--------~~~~~~~~d~~~~E~~rg~T~~~~~-------   67 (394)
T PRK12736          3 KEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLN--------QAKDYDSIDAAPEEKERGITINTAH-------   67 (394)
T ss_pred             hhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccc--------cccchhhhcCCHHHHhcCccEEEEe-------
Confidence            567888999999999999999999999999654322 110        1111236899999999999996543       


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                           ..|. +...+.++|+|||.+   +++.|.... ..++++        |++.|+             .++..+|++
T Consensus        68 -----~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-------------~~~~~~g~~  129 (394)
T PRK12736         68 -----VEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------------LLARQVGVP  129 (394)
T ss_pred             -----eEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-------------HHHHHcCCC
Confidence                 2332 234578999999976   454443221 222222        334444             788899999


Q ss_pred             EE-EEEeccCCCC
Q psy9643         231 HL-LATNAAGGLN  242 (412)
Q Consensus       231 ~I-I~~n~~G~l~  242 (412)
                      ++ +++||+|.++
T Consensus       130 ~~IvviNK~D~~~  142 (394)
T PRK12736        130 YLVVFLNKVDLVD  142 (394)
T ss_pred             EEEEEEEecCCcc
Confidence            75 5699999764

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.52  E-value=2.1e-15  Score=154.27  Aligned_cols=126  Identities=35%  Similarity=0.491  Sum_probs=86.2

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      ++.+..+|+++||+++||||||||||+++|++.+.+ |..        .....|.+|+.++|+++|+|+.+..       
T Consensus         3 ~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~--------~~~~~~~~d~~~~E~~rG~Ti~~~~-------   67 (394)
T TIGR00485         3 KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGA--------AARAYDQIDNAPEEKARGITINTAH-------   67 (394)
T ss_pred             hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcc--------cccccccccCCHHHHhcCcceeeEE-------
Confidence            567888999999999999999999999999654332 211        1112357899999999999995432       


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEee--CCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                           ..|. +...+.++|+|||.+   +++.|..  ++.-+|+-       |++.|+             .++..+|++
T Consensus        68 -----~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-------------~~~~~~gi~  129 (394)
T TIGR00485        68 -----VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI-------------LLARQVGVP  129 (394)
T ss_pred             -----EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCC
Confidence                 3333 223578999999975   4444432  22222221       234444             678889999


Q ss_pred             EEE-EEeccCCCCC
Q psy9643         231 HLL-ATNAAGGLNP  243 (412)
Q Consensus       231 ~II-~~n~~G~l~~  243 (412)
                      .+| ++||+|.+++
T Consensus       130 ~iIvvvNK~Dl~~~  143 (394)
T TIGR00485       130 YIVVFLNKCDMVDD  143 (394)
T ss_pred             EEEEEEEecccCCH
Confidence            985 6999998753

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.52  E-value=3.1e-15  Score=153.08  Aligned_cols=125  Identities=35%  Similarity=0.480  Sum_probs=85.8

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      |+++.++||++||+++||||||||||+++|++.+.+ |..        .....+.+|+++.|+++|+|+.++..      
T Consensus         3 ~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~--------~~~~~~~~d~~~~E~~rGiT~~~~~~------   68 (396)
T PRK12735          3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGG--------EAKAYDQIDNAPEEKARGITINTSHV------   68 (396)
T ss_pred             hhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCc--------ccchhhhccCChhHHhcCceEEEeee------
Confidence            689999999999999999999999999999553322 111        01122468899999999999965432      


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                            .|+ +...+.++|+|||.+   +++.|.... ..++++        |++.|+             .++..+|++
T Consensus        69 ------~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l-------------~~~~~~gi~  129 (396)
T PRK12735         69 ------EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI-------------LLARQVGVP  129 (396)
T ss_pred             ------EEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHH-------------HHHHHcCCC
Confidence                  232 223578999999975   455543322 222222        223333             678889999


Q ss_pred             EEE-EEeccCCCC
Q psy9643         231 HLL-ATNAAGGLN  242 (412)
Q Consensus       231 ~II-~~n~~G~l~  242 (412)
                      .+| ++||+|.++
T Consensus       130 ~iivvvNK~Dl~~  142 (396)
T PRK12735        130 YIVVFLNKCDMVD  142 (396)
T ss_pred             eEEEEEEecCCcc
Confidence            886 599999864

>PRK08292 AMP nucleosidase; Provisional

Probab=99.51  E-value=3.7e-13  Score=138.15  Aligned_cols=155  Identities=10%  Similarity=0.085  Sum_probs=110.6

Q ss_pred             EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCC
Q psy9643         191 FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLG  270 (412)
Q Consensus       191 ~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g  270 (412)
                      ....+|..|+++++..      -|+.....+..+..+|++.+|++|.||++++++++||+|+.+..+.+++..+.     
T Consensus       270 l~~~~G~~VtvvssGI------GpsnAA~ateeLa~lgpd~iIriGtAGgL~~~lkiGDvVIA~aavr~DGt~d~-----  338 (489)
T PRK08292        270 LIRADGQGITLVNIGV------GPSNAKTITDHLAVLRPHAWLMIGHCGGLRNSQRIGDYVLAHAYLRDDHVLDA-----  338 (489)
T ss_pred             eeccCCceEEEEEcCC------CHHHHHHHHHHHHHcCCCEEEEEEehhcCCCCCCCCCEEEECceEeCCccccc-----
Confidence            3456788888876332      12222223466778999999999999999999999999999999887752111     


Q ss_pred             CCCCCCCCCCCCCcccccHHHHHHHHHHHHHc--------CCCcceeeceEEEEecCccCC---HHH-HHHHHHcCCcEE
Q psy9643         271 VNEDRFGPRFPPMNKAYNKQLRAATLDIARDL--------NMSSIVKEGVYSVIGGPNFET---VAE-LNMLRICGVDAV  338 (412)
Q Consensus       271 ~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~--------g~~~~~~~Gvy~~~~GP~feT---~AE-~~~~~~~Gad~V  338 (412)
                          .+ +..  ...+.+..+...+.+++++.        |.+  ++.|++  ++|++|..   ..+ .+.|++.|+.+|
T Consensus       339 ----~~-p~e--vPa~a~~el~~aL~~aa~ev~~~~g~elg~~--~h~G~V--~SgD~F~~e~~~~~l~~~~~~~gAlAV  407 (489)
T PRK08292        339 ----VL-PPW--IPIPAIAEVQVALEDAVAEVTGLPGEELKRR--MRTGTV--VTTDDRNWELRYSASALRFNQSRAVAL  407 (489)
T ss_pred             ----cc-ccc--cCcCCcHHHHHHHHHHHHHHhhhcccccCCc--eEEEEE--EecCcCCCcCchHHHHHHhhhcCCEEE
Confidence                01 011  12233455666666655443        555  899975  58999842   122 345566699999


Q ss_pred             eCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         339 GMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       339 gMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      +||+++.+++|+.+|+|+++|++|||...
T Consensus       408 EMESAALa~va~~~gVP~gaIr~VSD~~~  436 (489)
T PRK08292        408 DMESATIAANGYRFRVPYGTLLCVSDKPL  436 (489)
T ss_pred             ehhHHHHHHHHHHhCCCEEEEEEEEecCC
Confidence            99999999999999999999999999984

>PLN03126 Elongation factor Tu; Provisional

Probab=99.50  E-value=3.4e-15  Score=155.74  Aligned_cols=133  Identities=32%  Similarity=0.468  Sum_probs=87.2

Q ss_pred             cchhhhhcc---ccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcC
Q psy9643          79 RRGYAEKQV---YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSG  155 (412)
Q Consensus        79 ~~~~~~~~~---~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsG  155 (412)
                      .+.|-+++.   +.++|+++||+++||||||||||+++|+..+  +.+..+..++     ...+|.+++|+++||++.++
T Consensus        63 ~~~~~~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~--~~i~~~~~~~-----~~~~D~~~~Er~rGiTi~~~  135 (478)
T PLN03126         63 RRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMAL--ASMGGSAPKK-----YDEIDAAPEERARGITINTA  135 (478)
T ss_pred             chhhhHHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhh--hhhccccccc-----cccccCChhHHhCCeeEEEE
Confidence            344444443   4558999999999999999999999994322  3222111111     12578889999999999554


Q ss_pred             cccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHH
Q psy9643         156 LSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRV  223 (412)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~l  223 (412)
                      ...+          .+ +-..+.++|+|||.+   +++.|... ...++++        |+++|+             .+
T Consensus       136 ~~~~----------~~-~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-------------~~  191 (478)
T PLN03126        136 TVEY----------ET-ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-------------LL  191 (478)
T ss_pred             EEEE----------ec-CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-------------HH
Confidence            3222          12 233678999999976   45444322 1222222        456666             78


Q ss_pred             HHHcCCCEEE-EEeccCCCC
Q psy9643         224 MKLVGVTHLL-ATNAAGGLN  242 (412)
Q Consensus       224 l~~lGv~~II-~~n~~G~l~  242 (412)
                      +..+|++++| ++||+|.++
T Consensus       192 ~~~~gi~~iIvvvNK~Dl~~  211 (478)
T PLN03126        192 AKQVGVPNMVVFLNKQDQVD  211 (478)
T ss_pred             HHHcCCCeEEEEEecccccC
Confidence            8999999765 699999865

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=6e-15  Score=142.71  Aligned_cols=137  Identities=25%  Similarity=0.372  Sum_probs=97.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccc--ccccCceee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIA--DSITDRHIF  169 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~--~~~~~~~~~  169 (412)
                      -+.+|||++||||||||||+.+|+++...                    +..+|-+|||++-.|..+..  .+-+-...-
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~--------------------~hseElkRgitIkLGYAd~~i~kC~~c~~~~   67 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTD--------------------RHSEELKRGITIKLGYADAKIYKCPECYRPE   67 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeee--------------------chhHHHhcCcEEEeccccCceEeCCCCCCCc
Confidence            45899999999999999999999886432                    33456789999988887642  110000000


Q ss_pred             ecC-------------CCCCccccCCCCCce---eEEEEe--eCCeEEEEe--------cceeeeecCCCCccccHHHHH
Q psy9643         170 PYD-------------TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM--------QGRFHYYEGYPLWKCAMPIRV  223 (412)
Q Consensus       170 ~~~-------------~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~l  223 (412)
                      .|.             -.+++.++|+|||.-   .|..|.  .+|+-+|+.        |+++|+             .+
T Consensus        68 ~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-------------~A  134 (415)
T COG5257          68 CYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-------------MA  134 (415)
T ss_pred             ccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-------------HH
Confidence            111             123456789999954   788885  466665553        799999             89


Q ss_pred             HHHcCCCEEEE-EeccCCCCCCCCCccHHHHHHHHhhcc
Q psy9643         224 MKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKDHINLMG  261 (412)
Q Consensus       224 l~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d~i~~~~  261 (412)
                      +.-+|++.||. .||++.+.++-..-..-.++.|+.-+.
T Consensus       135 leIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~  173 (415)
T COG5257         135 LEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTV  173 (415)
T ss_pred             HhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccc
Confidence            99999999775 799999988766666777777776554

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.49  E-value=2.4e-14  Score=147.80  Aligned_cols=136  Identities=23%  Similarity=0.436  Sum_probs=88.8

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccc
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLST  158 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~  158 (412)
                      .+|+++||+++||+|||||||+++|   ++. |.+.....+++++          .++|++|+.++|+++|+|+.++...
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~L---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~   78 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRL---LYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK   78 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHH---HHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE
Confidence            4789999999999999999999999   666 6666555555542          2479999999999999999765543


Q ss_pred             ccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeecCCCCccccHHHHHHHHcCCCE-EE
Q psy9643         159 IADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LL  233 (412)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II  233 (412)
                      +          .+ +...+.++|+|||.+   +++.+.... ..++++.....  .|..+.. ...+.+++.+|++. ++
T Consensus        79 ~----------~~-~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~--~~~~~~~-~~~~~~~~~~~~~~iiv  144 (425)
T PRK12317         79 F----------ET-DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA--GGVMPQT-REHVFLARTLGINQLIV  144 (425)
T ss_pred             E----------ec-CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC--CCCCcch-HHHHHHHHHcCCCeEEE
Confidence            2          12 223578899999975   344442221 22333322211  0111111 11235677899865 55


Q ss_pred             EEeccCCCC
Q psy9643         234 ATNAAGGLN  242 (412)
Q Consensus       234 ~~n~~G~l~  242 (412)
                      ++||+|..+
T Consensus       145 viNK~Dl~~  153 (425)
T PRK12317        145 AINKMDAVN  153 (425)
T ss_pred             EEEcccccc
Confidence            799999765

>TIGR01717 AMP-nucleosdse AMP nucleosidase

Probab=99.48  E-value=7.5e-13  Score=135.54  Aligned_cols=157  Identities=11%  Similarity=0.090  Sum_probs=116.0

Q ss_pred             EEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCC
Q psy9643         189 LVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPL  268 (412)
Q Consensus       189 l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl  268 (412)
                      ...+..+|..|+++++..      -|+........+..+|++.+|++|.||++++++++||+|+.+..+.+++..+    
T Consensus       256 Y~l~~~~g~~ItvvstGI------GpsnAaaiteeLa~lgp~~iI~iGscGgL~~~ikiGDlVIataAvR~DGtsd----  325 (477)
T TIGR01717       256 YHLITADGDGITLVNIGV------GPSNAKTITDHLAVLRPHAWLMIGHCGGLRESQRIGDYVLAHAYLREDHVLD----  325 (477)
T ss_pred             EEEEeeCCceEEEEECCC------CHHHHHHHHHHHHHcCCCEEEEEEccccCCCCCCCCCEEEEeeEEecCcchh----
Confidence            334567788888876432      1222222336677899999999999999999999999999999887765210    


Q ss_pred             CCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc--------CCCcceeeceEEEEecCccC----CHHHHHHHHHcCCc
Q psy9643         269 LGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL--------NMSSIVKEGVYSVIGGPNFE----TVAELNMLRICGVD  336 (412)
Q Consensus       269 ~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~--------g~~~~~~~Gvy~~~~GP~fe----T~AE~~~~~~~Gad  336 (412)
                           ..+.   +....+.+..+...+.+++++.        +.+  ++.|++  .++++|.    +....+.++..|+.
T Consensus       326 -----~ylp---~~~Papa~~~l~~aL~~Aa~~~~g~~g~el~~~--~h~G~V--~StD~F~~el~~~~~~~~l~~~gAl  393 (477)
T TIGR01717       326 -----AVLP---PDIPIPAIAEVQRALEDAVAEVTGRPGEELKRR--LRTGTV--LTTDDRNWELRYSASALRLNLSRAI  393 (477)
T ss_pred             -----hhcc---cccCCCCcHHHHHHHHHHHHHhhcccccccCCc--eEEEEE--EecCcCcccCCCHHHHHHHHhCCCE
Confidence                 0111   1123456788888888887663        334  899976  5789874    33444566777999


Q ss_pred             EEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         337 AVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       337 ~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      +|+||+++.+++|+.+|+|+++|++|||...
T Consensus       394 AVEMESAALaava~~~gVP~gaLr~VSD~~l  424 (477)
T TIGR01717       394 AVDMESATIAAQGYRFRVPYGTLLCVSDKPL  424 (477)
T ss_pred             EEehhHHHHHHHHHHhCCCEEEEEEEEEcCC
Confidence            9999999999999999999999999999984

This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.48  E-value=7.4e-15  Score=150.77  Aligned_cols=121  Identities=23%  Similarity=0.359  Sum_probs=86.5

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcccccc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLSTIAD  161 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~~~~~  161 (412)
                      +||+++||||||||||+++|   |+. |.++.+..+++++            .++|++|+.++|+++|+++.+++..+  
T Consensus         1 ~~~~~vGhvd~GKSTL~~~l---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~--   75 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRL---LHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF--   75 (406)
T ss_pred             CeEEEECCCCCCchhhhHHH---HHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--
Confidence            58999999999999999999   776 7676665655542            23689999999999999997765433  


Q ss_pred             cccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCC
Q psy9643         162 SITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGV  229 (412)
Q Consensus       162 ~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv  229 (412)
                              .+. -..+.++|+|||.+   ++..|... +..++++        |++.|+             .++..+|+
T Consensus        76 --------~~~-~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-------------~~~~~~~~  133 (406)
T TIGR02034        76 --------STD-KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-------------YIASLLGI  133 (406)
T ss_pred             --------ccC-CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-------------HHHHHcCC
Confidence                    122 23578999999975   44444322 1222232        345555             78889999


Q ss_pred             CEEE-EEeccCCCC
Q psy9643         230 THLL-ATNAAGGLN  242 (412)
Q Consensus       230 ~~II-~~n~~G~l~  242 (412)
                      +.+| ++||+|.++
T Consensus       134 ~~iivviNK~D~~~  147 (406)
T TIGR02034       134 RHVVLAVNKMDLVD  147 (406)
T ss_pred             CcEEEEEEeccccc
Confidence            8765 699999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.48  E-value=2.1e-14  Score=146.96  Aligned_cols=133  Identities=32%  Similarity=0.431  Sum_probs=85.1

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      |+++.++|+++||+++||||||||||+++|++.+.+ +....       ..+ +.+|+.+.|+++|+|+.++.       
T Consensus         3 ~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~-------~~~-~~~d~~~~E~~rg~Ti~~~~-------   67 (396)
T PRK00049          3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEA-------KAY-DQIDKAPEEKARGITINTAH-------   67 (396)
T ss_pred             hhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcc-------cch-hhccCChHHHhcCeEEeeeE-------
Confidence            678999999999999999999999999999543322 11100       011 26888999999999996543       


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEE-EEec
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLL-ATNA  237 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II-~~n~  237 (412)
                           ..|. +...+.++|+|||.+   ++..|.... ..++++...    +|..+.. .-.+.+++.+|++.+| ++||
T Consensus        68 -----~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~----~g~~~qt-~~~~~~~~~~g~p~iiVvvNK  137 (396)
T PRK00049         68 -----VEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAA----DGPMPQT-REHILLARQVGVPYIVVFLNK  137 (396)
T ss_pred             -----EEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECC----CCCchHH-HHHHHHHHHcCCCEEEEEEee
Confidence                 2232 223578899999965   444443222 222222211    1111110 0012678889999875 6999


Q ss_pred             cCCCC
Q psy9643         238 AGGLN  242 (412)
Q Consensus       238 ~G~l~  242 (412)
                      +|.++
T Consensus       138 ~D~~~  142 (396)
T PRK00049        138 CDMVD  142 (396)
T ss_pred             cCCcc
Confidence            99864

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.46  E-value=1.3e-14  Score=150.51  Aligned_cols=124  Identities=22%  Similarity=0.264  Sum_probs=79.9

Q ss_pred             cccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc-cc-
Q psy9643          87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS-IT-  164 (412)
Q Consensus        87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~-~~-  164 (412)
                      ++.+ .+++||+++||||||||||+++|+++.                    .++.++|.++|||+..|+..+-.. .+ 
T Consensus        28 ~~~~-~~~~~ig~~GHVDhGKTtLv~aLtg~~--------------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~   86 (460)
T PTZ00327         28 VISR-QATINIGTIGHVAHGKSTVVKALSGVK--------------------TVRFKREKVRNITIKLGYANAKIYKCPK   86 (460)
T ss_pred             HccC-CCcEEEEEEccCCCCHHHHHHHHhCCC--------------------cccchhhHHhCCchhccccccccccCcc
Confidence            3344 459999999999999999999997542                    135567889999999888754100 00 


Q ss_pred             --Cc-eeeec-----------------CCCCCccccCCCCCce---eEEEEeeCC-eEEEEe---------cceeeeecC
Q psy9643         165 --DR-HIFPY-----------------DTIPYFPVSTVPGHKG---QLVFGLING-IPIMCM---------QGRFHYYEG  211 (412)
Q Consensus       165 --~~-~~~~~-----------------~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~---------qgr~H~yeg  211 (412)
                        .+ ...++                 .....+.++|+|||.+   +++.|.... ..++++         |+++|+   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl---  163 (460)
T PTZ00327         87 CPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL---  163 (460)
T ss_pred             cCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH---
Confidence              00 00000                 1123578999999976   555554321 122222         345555   


Q ss_pred             CCCccccHHHHHHHHcCCCEE-EEEeccCCCCCC
Q psy9643         212 YPLWKCAMPIRVMKLVGVTHL-LATNAAGGLNPD  244 (412)
Q Consensus       212 ~~~~~v~~~i~ll~~lGv~~I-I~~n~~G~l~~~  244 (412)
                                .++..+|++.+ +++||+|.++++
T Consensus       164 ----------~i~~~lgi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        164 ----------AAVEIMKLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ----------HHHHHcCCCcEEEEEecccccCHH
Confidence                      78889999975 579999987543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.46  E-value=5.5e-14  Score=145.21  Aligned_cols=138  Identities=21%  Similarity=0.346  Sum_probs=88.0

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      ..+|+++||+++||||||||||+++|   ++. |.++.+..+++++.          ++|++|+.+.|+++|+++..+..
T Consensus         2 ~~~~~~~~v~i~Ghvd~GKSTL~~~l---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~   78 (426)
T TIGR00483         2 AKEKEHINVAFIGHVDHGKSTTVGHL---LYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHW   78 (426)
T ss_pred             CCCCceeEEEEEeccCCcHHHHHHHH---HHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEE
Confidence            35899999999999999999999999   665 65665555544322          47999999999999999976654


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEE
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLL  233 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II  233 (412)
                      .+          .+. ...+.+.|+|||.+   +++.+..+. ..++++......++ ..+. ....+.+++.+|++.+|
T Consensus        79 ~~----------~~~-~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~-t~~~~~~~~~~~~~~iI  145 (426)
T TIGR00483        79 KF----------ETD-KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQ-TREHAFLARTLGINQLI  145 (426)
T ss_pred             EE----------ccC-CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCc-hHHHHHHHHHcCCCeEE
Confidence            32          222 23568899999975   344442222 22233221111010 0111 11123567778887655


Q ss_pred             -EEeccCCCC
Q psy9643         234 -ATNAAGGLN  242 (412)
Q Consensus       234 -~~n~~G~l~  242 (412)
                       +.||+|..+
T Consensus       146 VviNK~Dl~~  155 (426)
T TIGR00483       146 VAINKMDSVN  155 (426)
T ss_pred             EEEEChhccC
Confidence             699999864

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>CHL00071 tufA elongation factor Tu

Probab=99.45  E-value=2.1e-14  Score=147.51  Aligned_cols=126  Identities=34%  Similarity=0.497  Sum_probs=84.4

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSIT  164 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~  164 (412)
                      ++++.++|+++||+++||+|||||||+++|++.+  +.+......    .++ .+|+++.|+++|+++.+...       
T Consensus         3 ~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~--~~~~~~~~~----~~~-~~d~~~~e~~rg~T~~~~~~-------   68 (409)
T CHL00071          3 REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTL--AAKGGAKAK----KYD-EIDSAPEEKARGITINTAHV-------   68 (409)
T ss_pred             hhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHh--Ccccccccc----ccc-cccCChhhhcCCEeEEccEE-------
Confidence            5688899999999999999999999999995432  222111110    011 47888899999999966432       


Q ss_pred             CceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE
Q psy9643         165 DRHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH  231 (412)
Q Consensus       165 ~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~  231 (412)
                           .|. +...+.++|+|||.+   +++.|... ...++++        |++.|+             .++..+|+++
T Consensus        69 -----~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~-------------~~~~~~g~~~  130 (409)
T CHL00071         69 -----EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHI-------------LLAKQVGVPN  130 (409)
T ss_pred             -----EEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCE
Confidence                 222 234578899999975   33333221 1222232        344454             7888999996


Q ss_pred             E-EEEeccCCCC
Q psy9643         232 L-LATNAAGGLN  242 (412)
Q Consensus       232 I-I~~n~~G~l~  242 (412)
                      + +++||+|.++
T Consensus       131 iIvvvNK~D~~~  142 (409)
T CHL00071        131 IVVFLNKEDQVD  142 (409)
T ss_pred             EEEEEEccCCCC
Confidence            6 5699999875

>KOG0052|consensus

Probab=99.41  E-value=1.3e-13  Score=137.28  Aligned_cols=135  Identities=27%  Similarity=0.400  Sum_probs=102.9

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      ..+|+|+||++|||||+||||+++      |+ |.++.+..+++++.          ++|.+|++..++++||++...++
T Consensus         2 ~~~~~~~ni~~i~h~~s~~stt~~------~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~   75 (391)
T KOG0052|consen    2 GKEKIHINIVVIGHVDSGKSTTTG------YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALW   75 (391)
T ss_pred             CCcccccceEEEEeeeeeeeEEEe------eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEee
Confidence            468999999999999999999998      33 66777777776553          36999999999999988866665


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCe-EEEEe---------------cceeeeecCCCCcccc
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGI-PIMCM---------------QGRFHYYEGYPLWKCA  218 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~-~vv~~---------------qgr~H~yeg~~~~~v~  218 (412)
                      .+.     .      ...+.+++|+|||.+   +|++|+.+.. .|++.               |+|+|+          
T Consensus        76 ~~~-----t------~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~eha----------  134 (391)
T KOG0052|consen   76 KFE-----T------SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA----------  134 (391)
T ss_pred             ccc-----c------eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhh----------
Confidence            431     1      122457899999988   8999976533 33322               577777          


Q ss_pred             HHHHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHH
Q psy9643         219 MPIRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMII  253 (412)
Q Consensus       219 ~~i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~  253 (412)
                         .++..|||+++|+ +|++++..+.+..-..-.+
T Consensus       135 ---lla~tlgv~qliv~v~k~D~~~~~~s~~r~~ei  167 (391)
T KOG0052|consen  135 ---LLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEI  167 (391)
T ss_pred             ---hhhccccceeeeEEeecccccCCCccccchhhh
Confidence               8999999999888 8999998887766554433

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=4.6e-14  Score=152.16  Aligned_cols=132  Identities=24%  Similarity=0.299  Sum_probs=87.2

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ..+||+|+||+|||||||+.+|   |+. |.+..  ..++...+ -.+|.+..|++||||+.|.-          ..+.|
T Consensus         9 ~~RNigI~aHidaGKTTltE~l---L~~tG~i~k--~G~v~~g~-~~~D~~e~EqeRGITI~saa----------~s~~~   72 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERI---LFYTGIISK--IGEVHDGA-ATMDWMEQEQERGITITSAA----------TTLFW   72 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHH---HHHcCCcCC--CccccCCC-ccCCCcHHHHhcCCEEeeee----------eEEEE
Confidence            3899999999999999999999   665 54432  23333322 24788888999999996633          22333


Q ss_pred             CCCCCccccCCCCCce-----eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCC
Q psy9643         172 DTIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE  246 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~  246 (412)
                      +.-..++++|+|||.|     ..-...++|+-+|+.     +-||..|.+- ...+.+...+++.++++||+|-+..++.
T Consensus        73 ~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvd-----aveGV~~QTE-tv~rqa~~~~vp~i~fiNKmDR~~a~~~  146 (697)
T COG0480          73 KGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVD-----AVEGVEPQTE-TVWRQADKYGVPRILFVNKMDRLGADFY  146 (697)
T ss_pred             cCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEE-----CCCCeeecHH-HHHHHHhhcCCCeEEEEECccccccChh
Confidence            3224579999999987     112223566665553     1112222211 1127889999999999999998776543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.40  E-value=2.8e-14  Score=131.01  Aligned_cols=122  Identities=26%  Similarity=0.392  Sum_probs=80.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      |+++||+++||+|||||||+++|   ++. +........+   ......+..+.|+++|+++.++...+.         .
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L---~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~~~ti~~~~~~~~---------~   65 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGAL---LGKAGAIDKRGIEE---TKNAFLDKHPEERERGITIDLSFISFE---------K   65 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHH---HHHHTSSSSHHHHH---HHHCHHHSSHHHHHCTSSSSSEEEEEE---------B
T ss_pred             CCEEEEEEECCCCCCcEeechhh---hhhccccccccccc---cccccccccchhhhccccccccccccc---------c
Confidence            67999999999999999999999   444 3333222211   123346677778899999976554431         0


Q ss_pred             cCCCCCccccCCCCCce---eEEEEee-CCeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643         171 YDTIPYFPVSTVPGHKG---QLVFGLI-NGIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA  238 (412)
Q Consensus       171 ~~~~~~~~i~d~pGH~~---~l~~G~~-~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~  238 (412)
                      -.....++++|+|||.+   ++..+.. .+..++++        |++.|+             ..++.++++.+|++||+
T Consensus        66 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-------------~~~~~~~~p~ivvlNK~  132 (188)
T PF00009_consen   66 NENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHL-------------KILRELGIPIIVVLNKM  132 (188)
T ss_dssp             TESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-------------HHHHHTT-SEEEEEETC
T ss_pred             cccccceeecccccccceeecccceecccccceeeeeccccccccccccc-------------ccccccccceEEeeeec
Confidence            12344678999999976   3333321 12333333        233333             88999999999999999


Q ss_pred             CCC
Q psy9643         239 GGL  241 (412)
Q Consensus       239 G~l  241 (412)
                      |.+
T Consensus       133 D~~  135 (188)
T PF00009_consen  133 DLI  135 (188)
T ss_dssp             TSS
T ss_pred             cch
Confidence            987

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=2.9e-13  Score=136.77  Aligned_cols=125  Identities=21%  Similarity=0.232  Sum_probs=89.6

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF  169 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~  169 (412)
                      +++...|+.||+|+|||||||++||+..  .|..+.+      +..+.++|++..||+||||+-+          +.+.+
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~--t~~~~~R------em~~Q~LDsMdiERERGITIKa----------q~v~l   66 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLEL--TGGLSER------EMRAQVLDSMDIERERGITIKA----------QAVRL   66 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHH--hcCcChH------HHHHHhhhhhhhHhhcCceEEe----------eEEEE
Confidence            4566789999999999999999999421  2555544      3446789999999999999943          44556


Q ss_pred             ecCC----CCCccccCCCCCcee-----EEEEeeCCeEEEEe--cceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643         170 PYDT----IPYFPVSTVPGHKGQ-----LVFGLINGIPIMCM--QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA  238 (412)
Q Consensus       170 ~~~~----~~~~~i~d~pGH~~~-----l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~  238 (412)
                      .|..    ...++++|+|||.|-     .......|+-+|+-  ||-+        .++.++++++-..+.+.|-++||.
T Consensus        67 ~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGve--------AQTlAN~YlAle~~LeIiPViNKI  138 (603)
T COG0481          67 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE--------AQTLANVYLALENNLEIIPVLNKI  138 (603)
T ss_pred             EEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchH--------HHHHHHHHHHHHcCcEEEEeeecc
Confidence            6652    234689999999881     11223457666653  4432        223346789999999999999999


Q ss_pred             CC
Q psy9643         239 GG  240 (412)
Q Consensus       239 G~  240 (412)
                      +.
T Consensus       139 DL  140 (603)
T COG0481         139 DL  140 (603)
T ss_pred             cC
Confidence            75

>KOG0461|consensus

Probab=99.37  E-value=6.6e-13  Score=129.53  Aligned_cols=144  Identities=28%  Similarity=0.413  Sum_probs=92.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT  173 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~  173 (412)
                      ++|+|++||||+|||||+.+|+..-              ..++|  |+.+...+||||++.||..+.-.  .+..+|-.+
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~--------------STaAF--Dk~pqS~eRgiTLDLGFS~~~v~--~parLpq~e   68 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELG--------------STAAF--DKHPQSTERGITLDLGFSTMTVL--SPARLPQGE   68 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhc--------------cchhh--ccCCcccccceeEeecceeeecc--cccccCccc
Confidence            6999999999999999999995321              22333  66777889999999999876311  234445555


Q ss_pred             CCCccccCCCCCceeEEEEeeCCeEEE-----Ee--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         174 IPYFPVSTVPGHKGQLVFGLINGIPIM-----CM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       174 ~~~~~i~d~pGH~~~l~~G~~~g~~vv-----~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                      --.|+++|||||++ ++...++|..++     ++        |+.+|+             .+...+--+.++++|+.+-
T Consensus        69 ~lq~tlvDCPGHas-LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL-------------iig~~~c~klvvvinkid~  134 (522)
T KOG0461|consen   69 QLQFTLVDCPGHAS-LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL-------------IIGELLCKKLVVVINKIDV  134 (522)
T ss_pred             cceeEEEeCCCcHH-HHHHHHhhhheeeeeeEEEehhcccccccchhh-------------hhhhhhccceEEEEecccc
Confidence            55789999999985 333333343322     22        455554             4445554455667999987


Q ss_pred             CCCCCCCccHHH----HHHHHhhccCCCCCCCC
Q psy9643         241 LNPDYEVGDIMI----IKDHINLMGFAGNNPLL  269 (412)
Q Consensus       241 l~~~~~~Gd~vi----~~d~i~~~~~~~~~pl~  269 (412)
                      +-++-+..-+-.    ..+-+.-++++|..|..
T Consensus       135 lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~  167 (522)
T KOG0461|consen  135 LPENQRASKIEKSAKKVRKTLESTGFDGNSPIV  167 (522)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHhcCcCCCCcee
Confidence            766544433322    33455667777777764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.35  E-value=3.5e-13  Score=145.77  Aligned_cols=126  Identities=25%  Similarity=0.360  Sum_probs=87.8

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCc
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGL  156 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl  156 (412)
                      +.|+++||+++||||||||||+++|   ++. |.+..+..+++++            .++|++|..++|+++|+|+.++.
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~L---l~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~   96 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRL---LYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAY   96 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHH---HHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeee
Confidence            4678999999999999999999999   666 6565544444431            13588999999999999997765


Q ss_pred             ccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHH
Q psy9643         157 STIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVM  224 (412)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll  224 (412)
                      ..+          .+ +-..+.++|+|||.+   +++.|... +..++++        |++.|+             .++
T Consensus        97 ~~~----------~~-~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-------------~~~  152 (632)
T PRK05506         97 RYF----------AT-PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-------------FIA  152 (632)
T ss_pred             eEE----------cc-CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-------------HHH
Confidence            432          12 223567899999975   44544222 1122232        344454             678


Q ss_pred             HHcCCCEEE-EEeccCCCC
Q psy9643         225 KLVGVTHLL-ATNAAGGLN  242 (412)
Q Consensus       225 ~~lGv~~II-~~n~~G~l~  242 (412)
                      ..+|++.+| ++||+|.++
T Consensus       153 ~~~~~~~iivvvNK~D~~~  171 (632)
T PRK05506        153 SLLGIRHVVLAVNKMDLVD  171 (632)
T ss_pred             HHhCCCeEEEEEEeccccc
Confidence            889988765 699999875

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.34  E-value=1.4e-13  Score=127.79  Aligned_cols=126  Identities=30%  Similarity=0.372  Sum_probs=75.7

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      |++||+++||+|||||||+++|++.... |..        .....+.+|+.+.|+++|+++.++...+          .+
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~--------~~~~~~~~d~~~~E~~rg~Ti~~~~~~~----------~~   62 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGA--------KFKKYDEIDKAPEEKARGITINTAHVEY----------ET   62 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccc--------cccccccccCChhhhhcCccEEeeeeEe----------cC
Confidence            5899999999999999999999543211 111        0011245788889999999996644322          11


Q ss_pred             CCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEE-EEEeccCCCC
Q psy9643         172 DTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHL-LATNAAGGLN  242 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~I-I~~n~~G~l~  242 (412)
                       +-..+.++|+|||.+   ++..+... ...++++...    +|..+. ....+.++..+|++.+ +++||+|.+.
T Consensus        63 -~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~----~g~~~~-~~~~~~~~~~~~~~~iIvviNK~D~~~  132 (195)
T cd01884          63 -ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAT----DGPMPQ-TREHLLLARQVGVPYIVVFLNKADMVD  132 (195)
T ss_pred             -CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECC----CCCcHH-HHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence             233578899999965   33333221 1223332211    111111 0012368888999854 6799999763

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0466|consensus

Probab=99.34  E-value=2.2e-14  Score=137.77  Aligned_cols=175  Identities=21%  Similarity=0.240  Sum_probs=110.5

Q ss_pred             chhhccccccccccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHH---H--HHHHHH
Q psy9643          62 DKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYE---L--IQSIAK  136 (412)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~---~--~~~~~~  136 (412)
                      ++.++.++++++|           ++++||. ++|||+||||.|||||++++++++..-...++...+   +  +..|.-
T Consensus        18 ~~ldv~~l~pls~-----------evisRQA-TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKI   85 (466)
T KOG0466|consen   18 TKLDVTKLHPLSP-----------EVISRQA-TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKI   85 (466)
T ss_pred             cccChhhcCCCCH-----------HHhhhee-eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceE
Confidence            7788899999999           8999999 999999999999999999999887653322221111   1  111222


Q ss_pred             HHhhh-cCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCce---eEEEEe--eCCeEEEE--------e
Q psy9643         137 FLLDS-ISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGL--INGIPIMC--------M  202 (412)
Q Consensus       137 ~i~~~-~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~--------~  202 (412)
                      |-.+. .-.+|.+.-..||+-.+-..+-.-...-.+.-.+++...|||||.=   .|.-|.  .+++-+++        .
T Consensus        86 Ykc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQP  165 (466)
T KOG0466|consen   86 YKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP  165 (466)
T ss_pred             EecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCC
Confidence            32232 1236777888888776532221111111233456778899999931   444443  12222221        1


Q ss_pred             cceeeeecCCCCccccHHHHHHHHcCCCEEEE-EeccCCCCCCCCCccHHHHHHHHhhcc
Q psy9643         203 QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMIIKDHINLMG  261 (412)
Q Consensus       203 qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~~d~i~~~~  261 (412)
                      |+.+|+             .+...+..++||. .|+++.++++......--+..|+.-+.
T Consensus       166 QTsEHL-------------aaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~  212 (466)
T KOG0466|consen  166 QTSEHL-------------AAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQGTV  212 (466)
T ss_pred             chhhHH-------------HHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHhccc
Confidence            677787             5566667787665 899999887766666666666665543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.32  E-value=2e-12  Score=121.80  Aligned_cols=141  Identities=23%  Similarity=0.384  Sum_probs=83.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccccccccc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTIADSIT  164 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~  164 (412)
                      ||+++||+|||||||+++|   ++. |.+..+..+++++          .++|++|..+.|+++|++..+....+     
T Consensus         1 nv~i~Gh~~~GKttL~~~l---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~-----   72 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHL---LYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF-----   72 (219)
T ss_pred             CEEEecCCCCChHHHHHHH---HHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE-----
Confidence            8999999999999999999   665 5555444334331          14578999999999999996654332     


Q ss_pred             CceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCEEE-EEec
Q psy9643         165 DRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTHLL-ATNA  237 (412)
Q Consensus       165 ~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~II-~~n~  237 (412)
                           .+ .-+.+.++|+|||.+   +++.+.-. ...++++......+| +.... .......++..+|++.+| ++||
T Consensus        73 -----~~-~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK  146 (219)
T cd01883          73 -----ET-EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNK  146 (219)
T ss_pred             -----ee-CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence                 22 234578999999965   22322111 122333322111111 01111 111123556778876655 7999


Q ss_pred             cCCCCCCCCCccH
Q psy9643         238 AGGLNPDYEVGDI  250 (412)
Q Consensus       238 ~G~l~~~~~~Gd~  250 (412)
                      +|...+++...++
T Consensus       147 ~Dl~~~~~~~~~~  159 (219)
T cd01883         147 MDDVTVNWSEERY  159 (219)
T ss_pred             cccccccccHHHH
Confidence            9987544333333

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]

Probab=99.30  E-value=7.1e-11  Score=110.46  Aligned_cols=159  Identities=19%  Similarity=0.264  Sum_probs=122.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      ..+.|.++|++|.++.+..-.     |+. ..++.=+..+|++.+|.++++|++.+++.+||+++.+-.+..++.   + 
T Consensus        49 ~~~~g~~~g~~v~v~StGIGg-----PSa-aIAvEEL~~lGa~tfiRVGT~Galq~~i~~Gdvvi~tgAvr~dG~---s-  118 (248)
T COG2820          49 RTYTGTYNGKPVTVCSTGIGG-----PSA-AIAVEELARLGAKTFIRVGTTGALQPDINVGDVVVATGAVRLDGA---S-  118 (248)
T ss_pred             EEEEEEEcCeEEEEEecCCCC-----chH-HHHHHHHHhcCCeEEEEeeccccccCCCCCCCEEEeccccccccc---c-
Confidence            567899999999998644332     333 234566677999999999999999999999999999888777651   1 


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC----------C---HHHHHHHHHcC
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE----------T---VAELNMLRICG  334 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe----------T---~AE~~~~~~~G  334 (412)
                           ..+-+..   +....|.++...+..++++.+..  ++.|+.+  +.+.|=          +   ..-.+.|+.+|
T Consensus       119 -----~~y~~~~---~PAv~d~~~t~al~~aa~~~~~~--~~vG~v~--S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~g  186 (248)
T COG2820         119 -----KHYAPEE---FPAVADFELTNALVEAAESLGVT--VHVGVVA--SSDAFYGQERYYSGFVTPEFKESWEEWQDLG  186 (248)
T ss_pred             -----ccccCCC---CCCCCCHHHHHHHHHHHHhcCCc--eEEEEEe--ecccccccccccccccCcchHHHHHHHHHcC
Confidence                 1111112   33456899999999999999987  9999765  555554          3   22356888899


Q ss_pred             CcEEeCchhHHHHHHHHcCCcEEEEEe-eeccCCC
Q psy9643         335 VDAVGMSTVHEVITAHHCGMTVTAFSL-ITNKCVT  368 (412)
Q Consensus       335 ad~VgMe~~pEa~~A~~~Gi~~~~i~~-VSd~a~~  368 (412)
                      ...+|||++....+|+..|++..++.. |.|.-.+
T Consensus       187 v~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~  221 (248)
T COG2820         187 VLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQG  221 (248)
T ss_pred             chhhHHHHHHHHHHHHHcCcccccEEEEEcccccc
Confidence            999999999999999999999999988 8887643

>PRK05634 nucleosidase; Provisional

Probab=99.26  E-value=5.4e-12  Score=116.20  Aligned_cols=131  Identities=16%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             HcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCC
Q psy9643         226 LVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS  305 (412)
Q Consensus       226 ~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~  305 (412)
                      .++++.||++|.+|++++.+.  |+++++..++++.  +..++ +    .+ +.+. .               .+..+++
T Consensus        47 ~~~p~~iIn~G~AG~l~~~l~--~vv~~~~v~~~D~--~~~~~-~----~~-~~~~-~---------------~~~~~~~  100 (185)
T PRK05634         47 GVLPPRVVNIGTAGALRDGLS--GVFEPSHVINHDF--SSDLI-R----AL-TGHP-V---------------ANRLELP  100 (185)
T ss_pred             CCCCCEEEEeecccCCCcCCC--eEEEEeeEEEccc--Ccccc-c----cc-cCcc-c---------------ccccccc
Confidence            589999999999999999876  6777777766643  11111 0    00 0000 0               0011222


Q ss_pred             cceeeceEEEEecCccCCHHHH-HHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHH
Q psy9643         306 SIVKEGVYSVIGGPNFETVAEL-NMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQA  384 (412)
Q Consensus       306 ~~~~~Gvy~~~~GP~feT~AE~-~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~  384 (412)
                       ....|+  +.+|++|.+..+. +.++. ++++|+||+++.+++|+++|+|+++|+.|||.+.    .....++.++++.
T Consensus       101 -~~~~g~--i~sgD~fvs~~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR~ISD~a~----~~~~~~~~~~~~~  172 (185)
T PRK05634        101 -TGDGAV--LATGDAFISDTATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVKHVSDSAD----ESALGSWPEAVDA  172 (185)
T ss_pred             -cCCCce--EecCCceecCHHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEEEeccCCC----CcccccHHHHHHH
Confidence             123453  4689999876654 34554 7899999999999999999999999999999983    4566678887766


Q ss_pred             HHHHHH
Q psy9643         385 GKLRGP  390 (412)
Q Consensus       385 ~~~~~~  390 (412)
                      +.+.+.
T Consensus       173 aa~~~~  178 (185)
T PRK05634        173 SARELG  178 (185)
T ss_pred             HHHHHH
Confidence            665544

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.26  E-value=1.6e-12  Score=123.00  Aligned_cols=124  Identities=25%  Similarity=0.299  Sum_probs=75.2

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC-
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD-  172 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~-  172 (412)
                      +||+++||+|||||||+++|   ++. |.+....     ....+.+|....|+++||++.++...+          .|. 
T Consensus         1 RNvaiiGhvd~GKTTL~d~L---l~~~g~i~~~~-----~g~~~~~D~~~~E~~RgiTi~~~~~~~----------~~~~   62 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSL---LASAGIISEKL-----AGKARYMDSREDEQERGITMKSSAISL----------YFEY   62 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHH---HHHcCCCcccc-----CCceeeccCCHHHHHhccccccceEEE----------EEec
Confidence            49999999999999999999   544 4332221     112356888889999999997754322          121 


Q ss_pred             --------CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643         173 --------TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG  239 (412)
Q Consensus       173 --------~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G  239 (412)
                              ....+.++|+|||.+   .+..+  ..++..+|+-.     -+|..+.. ..-++.+...|++.++++||+|
T Consensus        63 ~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~-----~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD  136 (222)
T cd01885          63 EEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDA-----VEGVCVQT-ETVLRQALKERVKPVLVINKID  136 (222)
T ss_pred             CcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEEC-----CCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence                    123467899999975   11111  12333333311     11211111 1123566678999899999999


Q ss_pred             CCC
Q psy9643         240 GLN  242 (412)
Q Consensus       240 ~l~  242 (412)
                      .+.
T Consensus       137 ~~~  139 (222)
T cd01885         137 RLI  139 (222)
T ss_pred             cch
Confidence            763

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.25  E-value=1.5e-12  Score=139.40  Aligned_cols=116  Identities=28%  Similarity=0.465  Sum_probs=78.1

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT  173 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~  173 (412)
                      .||+++||||||||||+++|   ++. |.....  .   ...++++|..+.|+++||++.+..          ..+.|.+
T Consensus         2 RNIaIiGHvd~GKTTLv~~L---L~~sg~~~~~--~---~v~~~~~D~~~~ErerGiTI~~~~----------~~v~~~~   63 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDAL---LKQSGTFRAN--E---AVAERVMDSNDLERERGITILAKN----------TAIRYNG   63 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHH---HHhcCCCccc--c---cceeecccCchHHHhCCccEEeee----------EEEEECC
Confidence            69999999999999999999   554 333221  1   112368999999999999996533          2344543


Q ss_pred             CCCccccCCCCCce---eEE--EEeeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         174 IPYFPVSTVPGHKG---QLV--FGLINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       174 ~~~~~i~d~pGH~~---~l~--~G~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                       ..++++|+|||.+   .+.  .-..++.-+|+-       |++.|+             ..+..+|++.||++||+|..
T Consensus        64 -~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l-------------~~a~~~~ip~IVviNKiD~~  129 (594)
T TIGR01394        64 -TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVL-------------KKALELGLKPIVVINKIDRP  129 (594)
T ss_pred             -EEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHH-------------HHHHHCCCCEEEEEECCCCC
Confidence             3578999999976   111  111223322221       333333             67788999999999999975


Q ss_pred             C
Q psy9643         242 N  242 (412)
Q Consensus       242 ~  242 (412)
                      +
T Consensus       130 ~  130 (594)
T TIGR01394       130 S  130 (594)
T ss_pred             C
Confidence            4

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.12  E-value=2e-11  Score=114.04  Aligned_cols=126  Identities=22%  Similarity=0.337  Sum_probs=76.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccccccccc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTIADSIT  164 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~  164 (412)
                      ||+++||+|||||||+++|   ++. +.+......+++.          ..++++|..+.|+++|++..+....      
T Consensus         1 ~i~iiG~~~~GKStL~~~L---l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~------   71 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRL---LYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRY------   71 (208)
T ss_pred             CEEEEECCCCCHHHHHHHH---HHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeE------
Confidence            6899999999999999999   665 5554333333331          2357789999999999999654322      


Q ss_pred             CceeeecCCCCCccccCCCCCce---eEEEEeeCCe--EEEEecceeeeecCCCCccccH-HHHHHHHcCCCEEE-EEec
Q psy9643         165 DRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGI--PIMCMQGRFHYYEGYPLWKCAM-PIRVMKLVGVTHLL-ATNA  237 (412)
Q Consensus       165 ~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~-~i~ll~~lGv~~II-~~n~  237 (412)
                          +.+ .-..+.++|+|||.+   .+..+ +...  .++++......      ..... ...++..++++.+| ++||
T Consensus        72 ----~~~-~~~~~~liDTpG~~~~~~~~~~~-~~~ad~~llVvD~~~~~------~~~~~~~~~~~~~~~~~~iIvviNK  139 (208)
T cd04166          72 ----FST-PKRKFIIADTPGHEQYTRNMVTG-ASTADLAILLVDARKGV------LEQTRRHSYILSLLGIRHVVVAVNK  139 (208)
T ss_pred             ----Eec-CCceEEEEECCcHHHHHHHHHHh-hhhCCEEEEEEECCCCc------cHhHHHHHHHHHHcCCCcEEEEEEc
Confidence                222 233578999999964   22222 2222  22232221110      11111 22566778877655 6999


Q ss_pred             cCCCC
Q psy9643         238 AGGLN  242 (412)
Q Consensus       238 ~G~l~  242 (412)
                      +|..+
T Consensus       140 ~D~~~  144 (208)
T cd04166         140 MDLVD  144 (208)
T ss_pred             hhccc
Confidence            99764

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.6e-11  Score=122.33  Aligned_cols=106  Identities=31%  Similarity=0.470  Sum_probs=79.5

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      ++|++.||||||||||+.++++..                    .|+.+++.++|++++.|++.+.          .++.
T Consensus         1 mii~t~GhidHgkT~L~~altg~~--------------------~d~l~EekKRG~TiDlg~~y~~----------~~d~   50 (447)
T COG3276           1 MIIGTAGHIDHGKTTLLKALTGGV--------------------TDRLPEEKKRGITIDLGFYYRK----------LEDG   50 (447)
T ss_pred             CeEEEeeeeeccchhhhhhhcccc--------------------cccchhhhhcCceEeeeeEecc----------CCCC
Confidence            478999999999999999996532                    3467778999999999987642          2222


Q ss_pred             CCccccCCCCCce---eEEEEe--eCCeEEEE-------ecceeeeecCCCCccccHHHHHHHHcCCCE-EEEEeccCCC
Q psy9643         175 PYFPVSTVPGHKG---QLVFGL--INGIPIMC-------MQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATNAAGGL  241 (412)
Q Consensus       175 ~~~~i~d~pGH~~---~l~~G~--~~g~~vv~-------~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n~~G~l  241 (412)
                       ...++|+|||.+   +|+.|.  ++.+-+++       .|+++|+             .+++.||.++ +|++++++..
T Consensus        51 -~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL-------------~iLdllgi~~giivltk~D~~  116 (447)
T COG3276          51 -VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL-------------LILDLLGIKNGIIVLTKADRV  116 (447)
T ss_pred             -ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH-------------HHHHhcCCCceEEEEeccccc
Confidence             356799999987   666662  22222222       2789998             8999999999 6679999988


Q ss_pred             CCC
Q psy9643         242 NPD  244 (412)
Q Consensus       242 ~~~  244 (412)
                      ++.
T Consensus       117 d~~  119 (447)
T COG3276         117 DEA  119 (447)
T ss_pred             cHH
Confidence            755

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.10  E-value=2.7e-11  Score=117.93  Aligned_cols=124  Identities=22%  Similarity=0.281  Sum_probs=77.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      ||+++||+|||||||+++|   ++. |.+..  ..+++. ..+++|..+.|+++|+++.++...+          .|.+ 
T Consensus         1 nv~ivGh~~~GKTtL~~~L---l~~~g~~~~--~g~v~~-~~~~~D~~~~E~~rgiti~~~~~~~----------~~~~-   63 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERI---LYYTGRIHK--IGEVHG-GGATMDFMEQERERGITIQSAATTC----------FWKD-   63 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHH---HHHcCCCcc--cccccC-CccccCCCccccCCCcCeeccEEEE----------EECC-
Confidence            8999999999999999999   554 43321  122222 2567889999999999997765433          2332 


Q ss_pred             CCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         175 PYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       175 ~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      ..+.++|+|||.+   ....+  ..++ .++++...    +|..+. ....+..++..|++.++++||++..+
T Consensus        64 ~~i~liDTPG~~df~~~~~~~l~~aD~-ailVVDa~----~g~~~~-t~~~~~~~~~~~~p~ivviNK~D~~~  130 (270)
T cd01886          64 HRINIIDTPGHVDFTIEVERSLRVLDG-AVAVFDAV----AGVEPQ-TETVWRQADRYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHcCE-EEEEEECC----CCCCHH-HHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            3568899999964   11111  1122 22232211    111111 11123677889999999999999765

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.10  E-value=2.1e-11  Score=133.99  Aligned_cols=136  Identities=24%  Similarity=0.298  Sum_probs=83.2

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR  166 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~  166 (412)
                      +.+....+||+++||+|||||||+++|   ++. |.+...     .....+++|..+.|+++||++.++...+       
T Consensus        14 ~~~~~~iRni~iigh~d~GKTTL~e~l---l~~~g~i~~~-----~~g~~~~~D~~~~E~~rgiTi~~~~~~~-------   78 (731)
T PRK07560         14 MKNPEQIRNIGIIAHIDHGKTTLSDNL---LAGAGMISEE-----LAGEQLALDFDEEEQARGITIKAANVSM-------   78 (731)
T ss_pred             hhchhcccEEEEEEeCCCCHHHHHHHH---HHHcCCcchh-----hcCcceecCccHHHHHhhhhhhccceEE-------
Confidence            344455889999999999999999999   665 444321     1123466888899999999997765432       


Q ss_pred             eeeecC-CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         167 HIFPYD-TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       167 ~~~~~~-~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                       .+.+. +-..++++|+|||.+   .+..+  ..++. ++++.    ..+|..+..- ..++.+...|.+.|+++||+|.
T Consensus        79 -~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~a-vlVvd----a~~g~~~~t~-~~~~~~~~~~~~~iv~iNK~D~  151 (731)
T PRK07560         79 -VHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGA-IVVVD----AVEGVMPQTE-TVLRQALRERVKPVLFINKVDR  151 (731)
T ss_pred             -EEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEE-EEEEE----CCCCCCccHH-HHHHHHHHcCCCeEEEEECchh
Confidence             11122 123468899999976   11111  12223 33332    1122222111 1125567789999999999997


Q ss_pred             CCCCC
Q psy9643         241 LNPDY  245 (412)
Q Consensus       241 l~~~~  245 (412)
                      ...++
T Consensus       152 ~~~~~  156 (731)
T PRK07560        152 LIKEL  156 (731)
T ss_pred             hcccc
Confidence            65443

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.10  E-value=2.1e-11  Score=135.61  Aligned_cols=144  Identities=20%  Similarity=0.228  Sum_probs=86.7

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRH  167 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~  167 (412)
                      ......+||+++||||||||||+++|   ++. |.+...     .....+++|..+.|+++||++.++...+.-......
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~L---l~~~g~i~~~-----~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~   85 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSL---VAAAGIIAQE-----VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDES   85 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHH---HHhcCCcccc-----cCCceeeccCcHHHHHhCCceecceeEEEeeccccc
Confidence            34445889999999999999999999   665 433321     122345678888999999999876544311000000


Q ss_pred             eee----cC-CCCCccccCCCCCce---eEEEEe--eCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEec
Q psy9643         168 IFP----YD-TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNA  237 (412)
Q Consensus       168 ~~~----~~-~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~  237 (412)
                      ...    .+ .-..++++|+|||.|   ++..+.  .+++.+|+-     +.||..+.+- ..++.+...+++.|+++||
T Consensus        86 ~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvd-----a~~Gv~~~t~-~~~~~~~~~~~p~i~~iNK  159 (843)
T PLN00116         86 LKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVD-----CIEGVCVQTE-TVLRQALGERIRPVLTVNK  159 (843)
T ss_pred             ccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEE-----CCCCCcccHH-HHHHHHHHCCCCEEEEEEC
Confidence            000    00 112358899999977   443332  334433331     2233322221 1236778889999999999


Q ss_pred             cCCCCCCCC
Q psy9643         238 AGGLNPDYE  246 (412)
Q Consensus       238 ~G~l~~~~~  246 (412)
                      +|.+.-+++
T Consensus       160 ~D~~~~~~~  168 (843)
T PLN00116        160 MDRCFLELQ  168 (843)
T ss_pred             Ccccchhhc
Confidence            998754443

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.09  E-value=3.1e-11  Score=124.28  Aligned_cols=132  Identities=23%  Similarity=0.321  Sum_probs=77.4

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc----cc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS----IT  164 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~----~~  164 (412)
                      .++||++||+++||+|||||||+++|++..                    .|+.+.|+++|+++..|+..+.-.    ++
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~--------------------~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~   63 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVW--------------------TDRHSEELKRGITIRLGYADATIRKCPDCE   63 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCee--------------------cccCHhHHhcCcEEEecccccccccccccC
Confidence            468899999999999999999999995421                    345566788999998887543210    00


Q ss_pred             Cc--eeee--cC-------CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCC
Q psy9643         165 DR--HIFP--YD-------TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGV  229 (412)
Q Consensus       165 ~~--~~~~--~~-------~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv  229 (412)
                      ..  .+..  +.       ....+.+.|+|||.+   +++.+... ...++++..+.    |.+.......+..+..+|+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----~~~~~~t~~~l~~l~~~~i  139 (411)
T PRK04000         64 EPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----PCPQPQTKEHLMALDIIGI  139 (411)
T ss_pred             ccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----CCCChhHHHHHHHHHHcCC
Confidence            00  0000  00       013578999999965   34444322 12233322221    1000111112356778898


Q ss_pred             CE-EEEEeccCCCCCC
Q psy9643         230 TH-LLATNAAGGLNPD  244 (412)
Q Consensus       230 ~~-II~~n~~G~l~~~  244 (412)
                      +. +++.||+|.++++
T Consensus       140 ~~iiVVlNK~Dl~~~~  155 (411)
T PRK04000        140 KNIVIVQNKIDLVSKE  155 (411)
T ss_pred             CcEEEEEEeeccccch
Confidence            75 6668999987643

>PTZ00416 elongation factor 2; Provisional

Probab=99.06  E-value=4.9e-11  Score=132.56  Aligned_cols=139  Identities=19%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR  166 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~  166 (412)
                      +.+.+..+||+++||+|||||||+++|   ++. |.+...     .....+.+|..+.|+++||++.++...+.-.....
T Consensus        13 ~~~~~~irni~iiGh~d~GKTTL~~~L---l~~~g~i~~~-----~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~   84 (836)
T PTZ00416         13 MDNPDQIRNMSVIAHVDHGKSTLTDSL---VCKAGIISSK-----NAGDARFTDTRADEQERGITIKSTGISLYYEHDLE   84 (836)
T ss_pred             hhCccCcCEEEEECCCCCCHHHHHHHH---HHhcCCcccc-----cCCceeecccchhhHhhcceeeccceEEEeecccc
Confidence            334455789999999999999999999   554 433321     12223457888999999999987643321000000


Q ss_pred             eeeecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         167 HIFPYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       167 ~~~~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                       ...-..-..++++|+|||.+   ++..+  ..+++-+|+ .    ..+|..+.+- ...+.+...++..|+++||+|..
T Consensus        85 -~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVv-d----a~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         85 -DGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVV-D----CVEGVCVQTE-TVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             -cccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEE-E----CCCCcCccHH-HHHHHHHHcCCCEEEEEEChhhh
Confidence             00000012368999999976   22111  233333333 1    2223233321 12367777899999999999976

>KOG0465|consensus

Probab=99.03  E-value=5.2e-11  Score=123.56  Aligned_cols=127  Identities=22%  Similarity=0.287  Sum_probs=84.8

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ...||||++|+|+||||++.++   ||. |....  +.+++.. .-++|.++.|+.+|||+-|+-          ..+.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~---Lyy~G~~~~--i~ev~~~-~a~md~m~~er~rgITiqSAA----------t~~~w  101 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERM---LYYTGRIKH--IGEVRGG-GATMDSMELERQRGITIQSAA----------TYFTW  101 (721)
T ss_pred             hhcccceEEEEecCCceeehee---eeecceeee--ccccccC-ceeeehHHHHHhcCceeeece----------eeeee
Confidence            3889999999999999999999   776 43321  1222222 456788888999999997643          23344


Q ss_pred             CCCCCccccCCCCCce-----eEEEEeeCCeEEEEec-ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         172 DTIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~-----~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      . ..+++++|+|||.|     +.-.-.++|+-+++.. +....       +.-..-+-++++|+.+|.++|+++-+..
T Consensus       102 ~-~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqs-------Qt~tV~rQ~~ry~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  102 R-DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVES-------QTETVWRQMKRYNVPRICFINKMDRMGA  171 (721)
T ss_pred             c-cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceeh-------hhHHHHHHHHhcCCCeEEEEehhhhcCC
Confidence            4 44679999999987     1112235676655541 11111       1111127899999999999999986543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.02  E-value=5.6e-11  Score=122.20  Aligned_cols=128  Identities=23%  Similarity=0.346  Sum_probs=75.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc----cCce
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI----TDRH  167 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~----~~~~  167 (412)
                      ++++||+++||+|||||||+++|++..                    .++.++|.++|+++.+|+..+....    .+..
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~--------------------~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~   61 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVW--------------------TDTHSEELKRGISIRLGYADAEIYKCPECDGPE   61 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCee--------------------cccCHhHHHcCceeEecccccccccccccCccc
Confidence            469999999999999999999995321                    3455567889999998876542110    0000


Q ss_pred             eeecC-----------CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCE-
Q psy9643         168 IFPYD-----------TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-  231 (412)
Q Consensus       168 ~~~~~-----------~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-  231 (412)
                      .+...           ....+.++|+|||.+   +++.|... ...++++....    |....+....+.++..+|++. 
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~----g~~~~qt~e~l~~l~~~gi~~i  137 (406)
T TIGR03680        62 CYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE----PCPQPQTKEHLMALEIIGIKNI  137 (406)
T ss_pred             cccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC----CccccchHHHHHHHHHcCCCeE
Confidence            00000           123578999999975   44444322 12233322111    100011111236778899986 


Q ss_pred             EEEEeccCCCCC
Q psy9643         232 LLATNAAGGLNP  243 (412)
Q Consensus       232 II~~n~~G~l~~  243 (412)
                      ++++||+|.+++
T Consensus       138 IVvvNK~Dl~~~  149 (406)
T TIGR03680       138 VIVQNKIDLVSK  149 (406)
T ss_pred             EEEEEccccCCH
Confidence            555999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.01  E-value=1.2e-10  Score=125.17  Aligned_cols=126  Identities=19%  Similarity=0.263  Sum_probs=77.0

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      +..+||+++||+|||||||+++|   ++. |.++.+.      ...+++|.++.|+++||++.+....          +.
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rL---l~~tg~i~~~~------~~~~~lD~~~~ErerGiTi~~~~v~----------~~   65 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRL---IELTGTLSERE------MKAQVLDSMDLERERGITIKAQAVR----------LN   65 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHH---HHhcCCCcccc------cccccccCchHHhhcCCcccccEEE----------EE
Confidence            34689999999999999999999   554 4443321      1347789999999999999664422          22


Q ss_pred             cC----CCCCccccCCCCCcee---EE--EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         171 YD----TIPYFPVSTVPGHKGQ---LV--FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       171 ~~----~~~~~~i~d~pGH~~~---l~--~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                      |.    +...++++|+|||.+-   +.  .-..++. ++++....    |....+. .....+...+++.|+++||+|..
T Consensus        66 ~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~a-ILVVDas~----gv~~qt~-~~~~~~~~~~lpiIvViNKiDl~  139 (600)
T PRK05433         66 YKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGA-LLVVDASQ----GVEAQTL-ANVYLALENDLEIIPVLNKIDLP  139 (600)
T ss_pred             EEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEE-EEEEECCC----CCCHHHH-HHHHHHHHCCCCEEEEEECCCCC
Confidence            32    1224689999999761   00  1112232 23332211    1111100 12245566799989999999964


Q ss_pred             C
Q psy9643         242 N  242 (412)
Q Consensus       242 ~  242 (412)
                      +
T Consensus       140 ~  140 (600)
T PRK05433        140 A  140 (600)
T ss_pred             c
Confidence            4

>PRK00007 elongation factor G; Reviewed

Probab=99.00  E-value=1.2e-10  Score=127.39  Aligned_cols=128  Identities=21%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+++||+|||||||+++|   ++. |....  ..++. ...+++|..+.|+++|+++.+....          +.|.
T Consensus        10 Irni~iiG~~~~GKsTL~~~l---l~~~g~~~~--~g~v~-~~~~~~D~~~~E~~rg~ti~~~~~~----------~~~~   73 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERI---LFYTGVNHK--IGEVH-DGAATMDWMEQEQERGITITSAATT----------CFWK   73 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHH---HHhcCCccc--ccccc-CCcccCCCCHHHHhCCCCEeccEEE----------EEEC
Confidence            789999999999999999999   554 33211  11111 1246789999999999999664422          2332


Q ss_pred             CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         173 TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                       -..++++|+|||.+   ++..+  ..++. ++++.+    .+|..+.+ ...+..+...|.+.|+++||+|..+.+
T Consensus        74 -~~~~~liDTPG~~~f~~ev~~al~~~D~~-vlVvda----~~g~~~qt-~~~~~~~~~~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         74 -DHRINIIDTPGHVDFTIEVERSLRVLDGA-VAVFDA----VGGVEPQS-ETVWRQADKYKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             -CeEEEEEeCCCcHHHHHHHHHHHHHcCEE-EEEEEC----CCCcchhh-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence             24689999999975   11111  12222 233221    12222221 112378889999999999999987644

>PRK10218 GTP-binding protein; Provisional

Probab=98.99  E-value=2.8e-10  Score=122.01  Aligned_cols=124  Identities=21%  Similarity=0.331  Sum_probs=77.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      ..||+++||+|||||||+.+|   ++. |.....     ....++++|..+.|+++|+++.+..          ..+.|.
T Consensus         5 iRnIaIiGh~d~GKTTLv~~L---l~~~g~~~~~-----~~~~~~v~D~~~~E~erGiTi~~~~----------~~i~~~   66 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKL---LQQSGTFDSR-----AETQERVMDSNDLEKERGITILAKN----------TAIKWN   66 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHH---HHhcCCcccc-----cccceeeeccccccccCceEEEEEE----------EEEecC
Confidence            689999999999999999999   543 332211     1112378999999999999985433          223343


Q ss_pred             CCCCccccCCCCCcee--E---EEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         173 TIPYFPVSTVPGHKGQ--L---VFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~~--l---~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      + ..++++|+|||.+-  .   ..-..++.-+|+ ..    .+|..+ ...+..+.+..+|++.|+++||+|..+
T Consensus        67 ~-~~inliDTPG~~df~~~v~~~l~~aDg~ILVV-Da----~~G~~~-qt~~~l~~a~~~gip~IVviNKiD~~~  134 (607)
T PRK10218         67 D-YRINIVDTPGHADFGGEVERVMSMVDSVLLVV-DA----FDGPMP-QTRFVTKKAFAYGLKPIVVINKVDRPG  134 (607)
T ss_pred             C-EEEEEEECCCcchhHHHHHHHHHhCCEEEEEE-ec----ccCccH-HHHHHHHHHHHcCCCEEEEEECcCCCC
Confidence            3 35789999999761  0   011122322222 11    111111 111123677789999999999999654

>PRK12739 elongation factor G; Reviewed

Probab=98.98  E-value=1.4e-10  Score=126.78  Aligned_cols=128  Identities=22%  Similarity=0.290  Sum_probs=79.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+++||+|||||||+++|   ++. |....  ..++.. ..+.+|..+.|+++||++.+....          +.| 
T Consensus         8 irni~iiGh~~~GKsTL~~~l---l~~~g~~~~--~~~v~~-~~~~~D~~~~E~~rgiti~~~~~~----------~~~-   70 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERI---LYYTGKSHK--IGEVHD-GAATMDWMEQEQERGITITSAATT----------CFW-   70 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHH---HHhCCCccc--cccccC-CccccCCChhHhhcCCCccceeEE----------EEE-
Confidence            889999999999999999999   554 32211  111111 146789999999999999654322          233 


Q ss_pred             CCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         173 TIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      +-..+.++|+|||.+   +...+  ..++. ++++..    .+|..+.+ ...+..+...|++.|+++||+|..+.+
T Consensus        71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~-ilVvDa----~~g~~~qt-~~i~~~~~~~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         71 KGHRINIIDTPGHVDFTIEVERSLRVLDGA-VAVFDA----VSGVEPQS-ETVWRQADKYGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             CCEEEEEEcCCCHHHHHHHHHHHHHHhCeE-EEEEeC----CCCCCHHH-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            233578999999965   11111  11222 222221    11211111 112367788999999999999987543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.96  E-value=2.1e-10  Score=123.49  Aligned_cols=105  Identities=32%  Similarity=0.448  Sum_probs=71.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      +.|+++||+|||||||+.+|++.-                    .|+.++|+++|||+..|+..+          ...+-
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~--------------------~dr~~eE~~rGiTI~l~~~~~----------~~~~g   50 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVN--------------------ADRLPEEKKRGMTIDLGYAYW----------PQPDG   50 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--------------------CccchhcccCCceEEeeeEEE----------ecCCC
Confidence            368999999999999999995421                    345667889999997766432          11112


Q ss_pred             CCccccCCCCCce---eEEEEeeCCeE--EEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE-EEEEeccCC
Q psy9643         175 PYFPVSTVPGHKG---QLVFGLINGIP--IMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATNAAGG  240 (412)
Q Consensus       175 ~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n~~G~  240 (412)
                      ..+.++|+|||.+   +++.|. .+..  ++++        |+++|.             .+++.+|++. ||++||+|.
T Consensus        51 ~~i~~IDtPGhe~fi~~m~~g~-~~~D~~lLVVda~eg~~~qT~ehl-------------~il~~lgi~~iIVVlNKiDl  116 (614)
T PRK10512         51 RVLGFIDVPGHEKFLSNMLAGV-GGIDHALLVVACDDGVMAQTREHL-------------AILQLTGNPMLTVALTKADR  116 (614)
T ss_pred             cEEEEEECCCHHHHHHHHHHHh-hcCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEECCcc
Confidence            2367899999975   555553 2222  2222        345555             7888999997 467999998


Q ss_pred             CCC
Q psy9643         241 LNP  243 (412)
Q Consensus       241 l~~  243 (412)
                      +++
T Consensus       117 v~~  119 (614)
T PRK10512        117 VDE  119 (614)
T ss_pred             CCH
Confidence            653

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.88  E-value=7.9e-10  Score=118.69  Aligned_cols=126  Identities=18%  Similarity=0.235  Sum_probs=74.9

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ...||+++||+|||||||+++|   ++. |.+..+.      ...+.+|.++.|+++||++.+...          .+.|
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rL---l~~~g~i~~~~------~~~~~~D~~~~ErerGiTi~~~~v----------~~~~   62 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRL---LEYTGAISERE------MREQVLDSMDLERERGITIKAQAV----------RLNY   62 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHH---HHHcCCCcccc------ccccccCCChHHHhcCCCeeeeEE----------EEEE
Confidence            3679999999999999999999   543 4333221      123667888889999999965332          2233


Q ss_pred             C--C--CCCccccCCCCCcee--EEEEeeCCe--EEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         172 D--T--IPYFPVSTVPGHKGQ--LVFGLINGI--PIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       172 ~--~--~~~~~i~d~pGH~~~--l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      .  +  ...+++.|+|||.+-  .+...+.+.  .++++...    +|...... ..++.+...++..|++.||+|..+
T Consensus        63 ~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat----~g~~~qt~-~~~~~~~~~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        63 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAA----QGIEAQTL-ANVYLALENDLEIIPVINKIDLPS  136 (595)
T ss_pred             EcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCC----CCCCHhHH-HHHHHHHHcCCCEEEEEECcCCCc
Confidence            2  1  124688999999761  111112222  22222211    11111111 122455567999899999999643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0469|consensus

Probab=98.87  E-value=3.5e-10  Score=115.05  Aligned_cols=199  Identities=18%  Similarity=0.249  Sum_probs=107.3

Q ss_pred             hccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      +..+.+++...|+.+|+|||||||||+..|   ..+ |.+...     +..-...+|..+.|.+||||+-|.--++--.+
T Consensus        10 r~lM~k~~NiRNmSVIAHVDHGKSTLTDsL---V~kAgIis~a-----kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~   81 (842)
T KOG0469|consen   10 RELMDKKKNIRNMSVIAHVDHGKSTLTDSL---VQKAGIISAA-----KAGETRFTDTRKDEQERGITIKSTAISLFFEM   81 (842)
T ss_pred             HHHhccccccccceEEEEecCCcchhhHHH---HHhhceeeec-----ccCCccccccccchhhcceEeeeeeeeehhhh
Confidence            355677888899999999999999999999   333 333210     11112346777789999999988665542222


Q ss_pred             cCce--eeec-CCCCC--ccccCCCCCce--eEEEE---eeCCeEEEE-------ecceeeeecCCCCccccHHHHHHHH
Q psy9643         164 TDRH--IFPY-DTIPY--FPVSTVPGHKG--QLVFG---LINGIPIMC-------MQGRFHYYEGYPLWKCAMPIRVMKL  226 (412)
Q Consensus       164 ~~~~--~~~~-~~~~~--~~i~d~pGH~~--~l~~G---~~~g~~vv~-------~qgr~H~yeg~~~~~v~~~i~ll~~  226 (412)
                      ++..  .+.- .+-.+  ++++|.|||.|  .-++.   .-+|+-||+       .|+..-+             +-+-.
T Consensus        82 ~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVL-------------rQA~~  148 (842)
T KOG0469|consen   82 SDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL-------------RQAIA  148 (842)
T ss_pred             hHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHH-------------HHHHH
Confidence            2111  0100 11223  37899999977  11111   124555543       3544332             33334


Q ss_pred             cCCCEEEEEeccCCCCCCCCCccHHHHHHHH------hh--ccCCCCCCCCCCC-CCCCC-CCCCCCcccccHHHHHHHH
Q psy9643         227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHI------NL--MGFAGNNPLLGVN-EDRFG-PRFPPMNKAYNKQLRAATL  296 (412)
Q Consensus       227 lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i------~~--~~~~~~~pl~g~~-~~~~g-~~~~~~~~~~d~~Lr~~~~  296 (412)
                      -.++.+++.|+++.---+++....-+-.-+-      |-  ..+ ++.|+.... +...| ..|.+--.-|...||+.+.
T Consensus       149 ERIkPvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy-~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~  227 (842)
T KOG0469|consen  149 ERIKPVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTY-GDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAE  227 (842)
T ss_pred             hhccceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEec-ccCCcCceEecCCCCceeeccccchhhhhHHHHHH
Confidence            4577788899998533334443322222111      10  000 111221000 00011 2233334556678888888


Q ss_pred             HHHHHcCCC
Q psy9643         297 DIARDLNMS  305 (412)
Q Consensus       297 ~~a~~~g~~  305 (412)
                      .-++++|+.
T Consensus       228 ~Y~~KF~~~  236 (842)
T KOG0469|consen  228 MYAKKFGID  236 (842)
T ss_pred             HHHHHhCCc
Confidence            888888775

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.87  E-value=7.5e-10  Score=121.08  Aligned_cols=128  Identities=20%  Similarity=0.232  Sum_probs=79.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+++||+|||||||+++|   ++. |.+..  ..+.. ...+.+|..+.|+++||++.+...          .+.|.
T Consensus        10 irni~iiG~~~~GKsTL~~~l---l~~~g~~~~--~~~~~-~g~~~~D~~~~e~~rgiti~~~~~----------~~~~~   73 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERI---LFYTGRIHK--IGEVH-DGAATMDWMEQEKERGITITSAAT----------TVFWK   73 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHH---HHhCCCccc--ccccc-CCccccCCCHHHHhcCCCEecceE----------EEEEC
Confidence            789999999999999999999   554 33211  11111 124778888999999999965432          23333


Q ss_pred             CCCCccccCCCCCceeEEE--E---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         173 TIPYFPVSTVPGHKGQLVF--G---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~~l~~--G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      + ..+.++|+|||.+.+..  .   ..++. ++++...    +|..+. ....++.++..+++.++++||+|..+.+
T Consensus        74 ~-~~i~liDTPG~~~~~~~~~~~l~~~D~~-ilVvda~----~g~~~~-~~~~~~~~~~~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        74 G-HRINIIDTPGHVDFTVEVERSLRVLDGA-VAVLDAV----GGVQPQ-SETVWRQANRYEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             C-eEEEEEECCCCcchhHHHHHHHHHhCEE-EEEEeCC----CCCChh-HHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            3 35789999999651110  0   11222 2232211    121111 1123366788899999999999987543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.85  E-value=8.3e-10  Score=118.29  Aligned_cols=105  Identities=30%  Similarity=0.391  Sum_probs=70.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      +||+++||+|||||||+.+|++.-                    .++.++|.++||++..|+..+          .+.+ 
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~--------------------~d~~~eE~~rGiTid~~~~~~----------~~~~-   49 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIA--------------------ADRLPEEKKRGMTIDLGFAYF----------PLPD-   49 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc--------------------CcCChhHhcCCceEEeEEEEE----------EeCC-
Confidence            589999999999999999995421                    234445677899986665332          2222 


Q ss_pred             CCccccCCCCCce---eEEEEeeCCeE-EEEe--------cceeeeecCCCCccccHHHHHHHHcCCC-EEEEEeccCCC
Q psy9643         175 PYFPVSTVPGHKG---QLVFGLINGIP-IMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVT-HLLATNAAGGL  241 (412)
Q Consensus       175 ~~~~i~d~pGH~~---~l~~G~~~g~~-vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~-~II~~n~~G~l  241 (412)
                      ..+.++|+|||..   +++.|..+... ++++        |+++|.             .+++.+|++ .||+.||+|.+
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl-------------~il~~lgi~~iIVVlNK~Dlv  116 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL-------------AVLDLLGIPHTIVVITKADRV  116 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEECCCCC
Confidence            3568899999965   45554332222 2222        233443             678889999 67779999987


Q ss_pred             CC
Q psy9643         242 NP  243 (412)
Q Consensus       242 ~~  243 (412)
                      ++
T Consensus       117 ~~  118 (581)
T TIGR00475       117 NE  118 (581)
T ss_pred             CH
Confidence            54

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.83  E-value=9.1e-10  Score=105.26  Aligned_cols=126  Identities=21%  Similarity=0.374  Sum_probs=74.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      ||+++||+|+|||||+.+|   ++. |.+..  ..++... .+.+|..+.|+++|+++.+....+          .+.+ 
T Consensus         1 ni~i~G~~~~GKTtL~~~l---l~~~g~i~~--~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~----------~~~~-   63 (237)
T cd04168           1 NIGILAHVDAGKTTLTESL---LYTSGAIRK--LGSVDKG-TTRTDTMELERQRGITIFSAVASF----------QWED-   63 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHH---HHHcCCccc--cccccCC-cccCCCchhHhhCCCceeeeeEEE----------EECC-
Confidence            8999999999999999999   554 33221  1111111 245677777899999986655332          2322 


Q ss_pred             CCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         175 PYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       175 ~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      ..+.++|+|||.+   ....+  ..++..+|+-..     +|... ........+...|++.++++||++..+.+
T Consensus        64 ~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~-----~g~~~-~~~~~~~~~~~~~~P~iivvNK~D~~~a~  132 (237)
T cd04168          64 TKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAV-----EGVQA-QTRILWRLLRKLNIPTIIFVNKIDRAGAD  132 (237)
T ss_pred             EEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCC-----CCCCH-HHHHHHHHHHHcCCCEEEEEECccccCCC
Confidence            2578899999965   11111  122333333211     11111 11112356778899999999999976544

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.83  E-value=1.3e-09  Score=119.77  Aligned_cols=137  Identities=23%  Similarity=0.289  Sum_probs=80.4

Q ss_pred             cccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccC
Q psy9643          87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITD  165 (412)
Q Consensus        87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~  165 (412)
                      .+.+.+..+||+++||+|||||||+++|   ++. |.+...     .....+.+|..+.|+++|+++.++...+-     
T Consensus        12 ~~~~~~~irnI~ivGh~~~GKTTL~~~l---l~~~g~i~~~-----~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~-----   78 (720)
T TIGR00490        12 LMWKPKFIRNIGIVAHIDHGKTTLSDNL---LAGAGMISEE-----LAGQQLYLDFDEQEQERGITINAANVSMV-----   78 (720)
T ss_pred             HhhCcccccEEEEEEeCCCCHHHHHHHH---HHHcCCCchh-----cCCceeecCCCHHHHhhcchhhcccceeE-----
Confidence            3344555789999999999999999999   554 433321     11123456777778999999987654321     


Q ss_pred             ceeeecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         166 RHIFPYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       166 ~~~~~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                       ..+.+ .-..+.++|+|||.+   .+..+  ..++. ++++...    +|..... ...++.+...+.+.++++||++.
T Consensus        79 -~~~~~-~~~~i~liDTPG~~~f~~~~~~al~~aD~~-llVvda~----~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~  150 (720)
T TIGR00490        79 -HEYEG-NEYLINLIDTPGHVDFGGDVTRAMRAVDGA-IVVVCAV----EGVMPQT-ETVLRQALKENVKPVLFINKVDR  150 (720)
T ss_pred             -EeecC-CceEEEEEeCCCccccHHHHHHHHHhcCEE-EEEEecC----CCCCccH-HHHHHHHHHcCCCEEEEEEChhc
Confidence             01111 123468899999965   11111  12222 2232211    1111111 11224566788999999999998


Q ss_pred             CCCC
Q psy9643         241 LNPD  244 (412)
Q Consensus       241 l~~~  244 (412)
                      ...+
T Consensus       151 ~~~~  154 (720)
T TIGR00490       151 LINE  154 (720)
T ss_pred             ccch
Confidence            7543

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.79  E-value=1.1e-09  Score=115.98  Aligned_cols=128  Identities=21%  Similarity=0.243  Sum_probs=74.4

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHH---HHHHHHhhhcCCCCceeEeeCcCcccccccccCcee
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQ---SIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHI  168 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~---~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~  168 (412)
                      ...||+++||+|||||||+++|   ++. |.+...  ..++   ......+|..+.|+++||++.+...          .
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~L---l~~~g~i~~~--g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~----------~   73 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKL---LLFGGAIQEA--GTVKGRKSGRHATSDWMEMEKQRGISVTSSVM----------Q   73 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHH---HHhCCCcccc--ceeeccccCccccCCCcHHHHhhCCceeeeeE----------E
Confidence            3789999999999999999999   554 332211  1111   0111235667778999999855432          3


Q ss_pred             eecCCCCCccccCCCCCcee---EEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         169 FPYDTIPYFPVSTVPGHKGQ---LVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       169 ~~~~~~~~~~i~d~pGH~~~---l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      +.|.. ..++++|+|||.+-   ....  ..++.- +++...    +|..+. .......++..|+..|+++||+|..+
T Consensus        74 ~~~~~-~~inliDTPG~~df~~~~~~~l~~aD~aI-lVvDa~----~gv~~~-t~~l~~~~~~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         74 FPYRD-CLINLLDTPGHEDFSEDTYRTLTAVDSAL-MVIDAA----KGVEPQ-TRKLMEVCRLRDTPIFTFINKLDRDG  145 (526)
T ss_pred             EEECC-EEEEEEECCCchhhHHHHHHHHHHCCEEE-EEEecC----CCCCHH-HHHHHHHHHhcCCCEEEEEECCcccc
Confidence            34433 24789999999651   1111  122332 222211    111111 11123567778999999999998654

>KOG0464|consensus

Probab=98.79  E-value=8.3e-10  Score=110.17  Aligned_cols=77  Identities=31%  Similarity=0.380  Sum_probs=51.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      ..|||+|+|+|+||||++.+|   ||- |.+..  ...+++. +.+.|-+..|+++||++.|.          ...+.|.
T Consensus        37 irnigiiahidagktttteri---ly~ag~~~s--~g~vddg-dtvtdfla~erergitiqsa----------av~fdwk  100 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERI---LYLAGAIHS--AGDVDDG-DTVTDFLAIERERGITIQSA----------AVNFDWK  100 (753)
T ss_pred             hhcceeEEEecCCCchhHHHH---HHHhhhhhc--ccccCCC-chHHHHHHHHHhcCceeeee----------eeecccc
Confidence            789999999999999999999   664 32210  1111111 12234455689999999663          2334444


Q ss_pred             CCCCccccCCCCCce
Q psy9643         173 TIPYFPVSTVPGHKG  187 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~  187 (412)
                      . .+++++|+|||.|
T Consensus       101 g-~rinlidtpghvd  114 (753)
T KOG0464|consen  101 G-HRINLIDTPGHVD  114 (753)
T ss_pred             c-ceEeeecCCCcce
Confidence            2 3568999999987

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.78  E-value=2.5e-09  Score=99.58  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=67.6

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc-c----------
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS-I----------  163 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~-~----------  163 (412)
                      +||+++||+|||||||+++|++..                    .+..+.+.++|+++..|+..+.-. .          
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~--------------------~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~   60 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVW--------------------TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYC   60 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC--------------------CCCCCeeEEcCCceeecccccccccccCcCCCCccc
Confidence            699999999999999999995431                    234455677788887776554210 0          


Q ss_pred             ----cCceeeecC-------CCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcC
Q psy9643         164 ----TDRHIFPYD-------TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVG  228 (412)
Q Consensus       164 ----~~~~~~~~~-------~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lG  228 (412)
                          ++....++.       ....+.++|+|||.+   .++.+... ...++++.....   +..+... ..+..+...+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~---~~~~~t~-~~l~~~~~~~  136 (203)
T cd01888          61 YRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP---CPQPQTS-EHLAALEIMG  136 (203)
T ss_pred             cccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC---CCCcchH-HHHHHHHHcC
Confidence                001111111       114578899999964   22222211 122233222110   0011111 1224456678


Q ss_pred             CCE-EEEEeccCCCC
Q psy9643         229 VTH-LLATNAAGGLN  242 (412)
Q Consensus       229 v~~-II~~n~~G~l~  242 (412)
                      .+. +|++||+|..+
T Consensus       137 ~~~iiivvNK~Dl~~  151 (203)
T cd01888         137 LKHIIIVQNKIDLVK  151 (203)
T ss_pred             CCcEEEEEEchhccC
Confidence            764 56799999764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04167 Snu114p Snu114p subfamily

Probab=98.76  E-value=1.8e-09  Score=101.19  Aligned_cols=135  Identities=20%  Similarity=0.146  Sum_probs=71.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      .||+++||+|||||||+++|+...  +....+  .+......+.+++...|+++|+++.+....+.-.-.+      ...
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~--~~~~~~--~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~------~~~   70 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQT--HDLTPS--GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSK------GKS   70 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhc--CCCccc--ccccCCceeECCCCHHHHHcCccccccceeEEEEcCC------CCE
Confidence            489999999999999999994322  222110  1112223344677777889999986654332100000      011


Q ss_pred             CCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         175 PYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       175 ~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      ..+.++|+|||.+   ....+... ...++++...    +|..... ...++.+...+...+++.||+|.+..+
T Consensus        71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~----~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~~~~~  139 (213)
T cd04167          71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVV----EGVTSNT-ERLIRHAILEGLPIVLVINKIDRLILE  139 (213)
T ss_pred             EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECC----CCCCHHH-HHHHHHHHHcCCCEEEEEECcccCccc
Confidence            2467899999964   11111111 1222232211    1111110 011244555788888899999987443

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04169 RF3 RF3 subfamily

Probab=98.74  E-value=1.8e-09  Score=104.97  Aligned_cols=128  Identities=21%  Similarity=0.269  Sum_probs=71.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH---HHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS---IAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF  169 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~---~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~  169 (412)
                      ..||+++||+|||||||+++|   ++. |.+...  ..++.   ...-.+|..+.|+++|+++.+....          +
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~l---l~~~g~i~~~--g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~----------~   66 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKL---LLFGGAIREA--GAVKARKSRKHATSDWMEIEKQRGISVTSSVMQ----------F   66 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHH---HHhcCCcccC--ceecccccCCCccCCCcHHHHhCCCCeEEEEEE----------E
Confidence            379999999999999999999   554 333211  11110   0112356666788899888554322          2


Q ss_pred             ecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         170 PYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       170 ~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      .+.+ ..+.++|+|||.+   ....+  ..++. ++++....    |.... .......+...+++.++++||++..+.
T Consensus        67 ~~~~-~~i~liDTPG~~df~~~~~~~l~~aD~~-IlVvda~~----g~~~~-~~~i~~~~~~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          67 EYRD-CVINLLDTPGHEDFSEDTYRTLTAVDSA-VMVIDAAK----GVEPQ-TRKLFEVCRLRGIPIITFINKLDREGR  138 (267)
T ss_pred             eeCC-EEEEEEECCCchHHHHHHHHHHHHCCEE-EEEEECCC----CccHH-HHHHHHHHHhcCCCEEEEEECCccCCC
Confidence            3332 2578899999964   11111  11222 33322111    11111 011235566789999999999986543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=2.8e-09  Score=107.43  Aligned_cols=120  Identities=23%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccch-hhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS-YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~-~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      ..+++||.|.|+|||||+..|+  |+-|.+.. .+...-.....-..|++..|++|||.+-|+.          ..++|.
T Consensus        12 RRTFAIISHPDAGKTTlTEkLL--lfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSV----------MqF~Y~   79 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLL--LFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSV----------MQFDYA   79 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHH--HhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeE----------EEeccC
Confidence            5688999999999999999993  33232211 1110000001112455677999999996644          345676


Q ss_pred             CCCCccccCCCCCce----eE-EEEeeCCeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643         173 TIPYFPVSTVPGHKG----QL-VFGLINGIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG  239 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~----~l-~~G~~~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G  239 (412)
                      +. .+++.|+|||.|    .. ....++ ..|+++        |++.-.             .+++.-|...+-++||.|
T Consensus        80 ~~-~iNLLDTPGHeDFSEDTYRtLtAvD-sAvMVIDaAKGiE~qT~KLf-------------eVcrlR~iPI~TFiNKlD  144 (528)
T COG4108          80 DC-LVNLLDTPGHEDFSEDTYRTLTAVD-SAVMVIDAAKGIEPQTLKLF-------------EVCRLRDIPIFTFINKLD  144 (528)
T ss_pred             Ce-EEeccCCCCccccchhHHHHHHhhh-eeeEEEecccCccHHHHHHH-------------HHHhhcCCceEEEeeccc
Confidence            54 579999999987    11 111122 233333        333222             677878888888899987


Q ss_pred             C
Q psy9643         240 G  240 (412)
Q Consensus       240 ~  240 (412)
                      -
T Consensus       145 R  145 (528)
T COG4108         145 R  145 (528)
T ss_pred             c
Confidence            5

>TIGR00503 prfC peptide chain release factor 3

Probab=98.71  E-value=3.4e-09  Score=112.27  Aligned_cols=128  Identities=19%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHH-HH--HHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQ-SI--AKFLLDSISIRPKIGIICGSGLSTIADSITDRH  167 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~-~~--~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~  167 (412)
                      ...+||+++||+|||||||+++|   |+. |.+...  ..++ ..  ....+|..+.|+++||++.+...          
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~L---l~~~g~i~~~--g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~----------   73 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKV---LLYGGAIQTA--GAVKGRGSQRHAKSDWMEMEKQRGISITTSVM----------   73 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHH---HHhCCCcccc--ceeccccccccccCCCCHHHHhcCCcEEEEEE----------
Confidence            34789999999999999999999   554 333211  1111 00  11346777789999999855432          


Q ss_pred             eeecCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         168 IFPYDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       168 ~~~~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                      .+.|.+ ..++++|+|||.+   ....+  ..++. ++++....    |.... ...-...++..++..++++||++..
T Consensus        74 ~~~~~~-~~inliDTPG~~df~~~~~~~l~~aD~a-IlVvDa~~----gv~~~-t~~l~~~~~~~~~PiivviNKiD~~  145 (527)
T TIGR00503        74 QFPYRD-CLVNLLDTPGHEDFSEDTYRTLTAVDNC-LMVIDAAK----GVETR-TRKLMEVTRLRDTPIFTFMNKLDRD  145 (527)
T ss_pred             EEeeCC-eEEEEEECCChhhHHHHHHHHHHhCCEE-EEEEECCC----CCCHH-HHHHHHHHHhcCCCEEEEEECcccc
Confidence            233433 3578899999964   11111  11222 22222110    11111 1112356677889999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0467|consensus

Probab=98.62  E-value=9.4e-09  Score=109.21  Aligned_cols=128  Identities=23%  Similarity=0.267  Sum_probs=82.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      ..||.+++|||||||||++.|   +.. |.+..+--.++     ..+|..++|..||||.-|+--+            +.
T Consensus         9 irn~~~vahvdhgktsladsl---~asngvis~rlagki-----rfld~redeq~rgitmkss~is------------~~   68 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSL---VASNGVISSRLAGKI-----RFLDTREDEQTRGITMKSSAIS------------LL   68 (887)
T ss_pred             eeEEEEEEEecCCccchHHHH---HhhccEechhhccce-----eeccccchhhhhceeeeccccc------------cc
Confidence            689999999999999999999   444 44433222222     2367778899999999775432            21


Q ss_pred             -CCCCccccCCCCCce--eEEEEe---eCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCC
Q psy9643         173 -TIPYFPVSTVPGHKG--QLVFGL---INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE  246 (412)
Q Consensus       173 -~~~~~~i~d~pGH~~--~l~~G~---~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~  246 (412)
                       +-..++++|.|||.|  ..+...   .+|+-|++     -..||..+++. ..+|-+-.-|.+.++++||++.+--+++
T Consensus        69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlv-----dvvegv~~qt~-~vlrq~~~~~~~~~lvinkidrl~~el~  142 (887)
T KOG0467|consen   69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLV-----DVVEGVCSQTY-AVLRQAWIEGLKPILVINKIDRLITELK  142 (887)
T ss_pred             cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEE-----eeccccchhHH-HHHHHHHHccCceEEEEehhhhHHHHHh
Confidence             112358899999987  122211   24554544     23445444432 1235455678899999999997766654


Q ss_pred             C
Q psy9643         247 V  247 (412)
Q Consensus       247 ~  247 (412)
                      .
T Consensus       143 l  143 (887)
T KOG0467|consen  143 L  143 (887)
T ss_pred             c
Confidence            3

>PRK13351 elongation factor G; Reviewed

Probab=98.56  E-value=2.1e-08  Score=109.81  Aligned_cols=127  Identities=23%  Similarity=0.314  Sum_probs=75.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+++||+|||||||+.+|   ++. |.....  ..++. -.+.+|..+.|+++|+++.+....          +.+.
T Consensus         8 irni~iiG~~~~GKTtL~~~l---l~~~g~~~~~--~~v~~-~~~~~d~~~~e~~r~~ti~~~~~~----------~~~~   71 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERI---LFYTGKIHKM--GEVED-GTTVTDWMPQEQERGITIESAATS----------CDWD   71 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHH---HHhcCCcccc--ccccC-CcccCCCCHHHHhcCCCcccceEE----------EEEC
Confidence            789999999999999999999   443 322111  11111 134567777889999999765533          2232


Q ss_pred             CCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         173 TIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                       ...+.++|+|||.+  .....   ..++. ++++....    |.... ....+..+...+++.++++||++..+.
T Consensus        72 -~~~i~liDtPG~~df~~~~~~~l~~aD~~-ilVvd~~~----~~~~~-~~~~~~~~~~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         72 -NHRINLIDTPGHIDFTGEVERSLRVLDGA-VVVFDAVT----GVQPQ-TETVWRQADRYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             -CEEEEEEECCCcHHHHHHHHHHHHhCCEE-EEEEeCCC----CCCHH-HHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence             23578899999965  11111   12222 22322111    11111 111235677889999999999987653

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=7.9e-08  Score=99.56  Aligned_cols=107  Identities=29%  Similarity=0.367  Sum_probs=63.3

Q ss_pred             EEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC--CC
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD--TI  174 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~--~~  174 (412)
                      +.+.||||||||||.+.|   -.. .+                   ...-.-|||.--|-+          .+++.  +.
T Consensus         8 VtimGHVDHGKTtLLD~I---R~t-~V-------------------a~~EaGGITQhIGA~----------~v~~~~~~~   54 (509)
T COG0532           8 VTIMGHVDHGKTTLLDKI---RKT-NV-------------------AAGEAGGITQHIGAY----------QVPLDVIKI   54 (509)
T ss_pred             EEEeCcccCCccchhhhH---hcC-cc-------------------ccccCCceeeEeeeE----------EEEeccCCC
Confidence            468999999999999999   111 00                   011124566533332          23444  56


Q ss_pred             CCccccCCCCCce--eEEE-E-eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         175 PYFPVSTVPGHKG--QLVF-G-LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       175 ~~~~i~d~pGH~~--~l~~-G-~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                      |.++++|+|||..  +|.. | .+-+..+++..    .-+|.-|++ .-++..++.+|++-+|++||++-.
T Consensus        55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa----~dDGv~pQT-iEAI~hak~a~vP~iVAiNKiDk~  120 (509)
T COG0532          55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVA----ADDGVMPQT-IEAINHAKAAGVPIVVAINKIDKP  120 (509)
T ss_pred             ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEE----ccCCcchhH-HHHHHHHHHCCCCEEEEEecccCC
Confidence            8899999999965  2222 1 12222222221    111222222 124589999999999999999865

>cd01889 SelB_euk SelB subfamily

Probab=98.40  E-value=6.7e-08  Score=88.73  Aligned_cols=128  Identities=19%  Similarity=0.250  Sum_probs=67.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc---cCceeeec
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI---TDRHIFPY  171 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~---~~~~~~~~  171 (412)
                      +||+++||+|+|||||+.+|+..   +.             .+..++...+.++|++.+.++..+.-..   .+.....-
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~---~~-------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~   64 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEI---AS-------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPG   64 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhc---cc-------------hhhhccCHHHHHcCCeeeecceEEEeccccccccccccc
Confidence            69999999999999999999432   10             0123333345667888877665431000   00000000


Q ss_pred             CCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         172 DTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      .+...+.+.|+|||.+   .++.+.-. ...++++....    |...... .....+..++++.+++.||+|.++.
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~----~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATK----GIQTQTA-ECLVIGEILCKKLIVVLNKIDLIPE  135 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----CccHHHH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence            1133578899999954   22221111 12223322111    1011110 0124456678888889999997643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.40  E-value=9.4e-08  Score=90.64  Aligned_cols=130  Identities=15%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             EEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCc--cccccc---------c-
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGL--STIADS---------I-  163 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl--~~~~~~---------~-  163 (412)
                      |+++||+++|||||+++++...+. +....+          --+++...|.++|++.-...  ..+.+.         . 
T Consensus         2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~----------~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~   71 (224)
T cd04165           2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKAR----------LNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHL   71 (224)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCcCCCCCeEE----------eehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcc
Confidence            689999999999999999754443 211110          01234445666777742111  001100         0 


Q ss_pred             cCc--eeeecCCCCCccccCCCCCce---eEEEEee---CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEE
Q psy9643         164 TDR--HIFPYDTIPYFPVSTVPGHKG---QLVFGLI---NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLAT  235 (412)
Q Consensus       164 ~~~--~~~~~~~~~~~~i~d~pGH~~---~l~~G~~---~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~  235 (412)
                      ...  ..+.. .-..+.++|+|||.+   +++.|..   ....++++...    +|..+ .....+..+..+|++.++++
T Consensus        72 ~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~----~g~~~-~d~~~l~~l~~~~ip~ivvv  145 (224)
T cd04165          72 SESDIEICEK-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAAN----AGIIG-MTKEHLGLALALNIPVFVVV  145 (224)
T ss_pred             ccccceeeee-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECC----CCCcH-HHHHHHHHHHHcCCCEEEEE
Confidence            000  01111 234578999999965   3444432   12223333211    01110 01112367888999999999


Q ss_pred             eccCCCC
Q psy9643         236 NAAGGLN  242 (412)
Q Consensus       236 n~~G~l~  242 (412)
                      |++|.++
T Consensus       146 NK~D~~~  152 (224)
T cd04165         146 TKIDLAP  152 (224)
T ss_pred             ECccccC
Confidence            9999764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1145|consensus

Probab=98.37  E-value=2.6e-07  Score=95.58  Aligned_cols=112  Identities=27%  Similarity=0.316  Sum_probs=61.2

Q ss_pred             EEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCC
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPY  176 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~  176 (412)
                      +-+.||||||||||.+.|-+.    .+-         |          .--=|||..-|-+.        ..+|  +-..
T Consensus       156 VTiMGHVDHGKTTLLD~lRks----~VA---------A----------~E~GGITQhIGAF~--------V~~p--~G~~  202 (683)
T KOG1145|consen  156 VTIMGHVDHGKTTLLDALRKS----SVA---------A----------GEAGGITQHIGAFT--------VTLP--SGKS  202 (683)
T ss_pred             EEEeecccCChhhHHHHHhhC----cee---------h----------hhcCCccceeceEE--------EecC--CCCE
Confidence            346899999999999999211    000         0          01136776554432        1223  2245


Q ss_pred             ccccCCCCCce--eEE-EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCC
Q psy9643         177 FPVSTVPGHKG--QLV-FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV  247 (412)
Q Consensus       177 ~~i~d~pGH~~--~l~-~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~  247 (412)
                      +++.|+|||..  .|. .|. +...++++-  .-+-.|.-| +++-+|..++..+|+.||.+|+++  .|+..|
T Consensus       203 iTFLDTPGHaAF~aMRaRGA-~vtDIvVLV--VAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiD--kp~a~p  270 (683)
T KOG1145|consen  203 ITFLDTPGHAAFSAMRARGA-NVTDIVVLV--VAADDGVMP-QTLEAIKHAKSANVPIVVAINKID--KPGANP  270 (683)
T ss_pred             EEEecCCcHHHHHHHHhccC-ccccEEEEE--EEccCCccH-hHHHHHHHHHhcCCCEEEEEeccC--CCCCCH
Confidence            68899999964  221 121 122222220  000111111 222356899999999999999998  444433

>cd01890 LepA LepA subfamily

Probab=98.33  E-value=8.6e-08  Score=86.15  Aligned_cols=125  Identities=18%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec---
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY---  171 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~---  171 (412)
                      .||+++||+++|||||+.+|++..  +......+      ..+..+..+.++.+|++..+..          ....|   
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~--~~~~~~~~------~~~~~~~~~~~~~~g~t~~~~~----------~~~~~~~~   62 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELT--GTVSKREM------KEQVLDSMDLERERGITIKAQT----------VRLNYKAK   62 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHh--CCCCcCCC------ceEeccCChhHHHCCCeEecce----------EEEEEecC
Confidence            499999999999999999994321  22211100      1233455555677788763321          11222   


Q ss_pred             C-CCCCccccCCCCCce--eEEEEeeCCeE--EEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         172 D-TIPYFPVSTVPGHKG--QLVFGLINGIP--IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       172 ~-~~~~~~i~d~pGH~~--~l~~G~~~g~~--vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      . ....+.+.|+|||.+  .+..-.+.+..  ++++......    ..... ...+.+...++..+++.||+|..+
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~----~~~~~-~~~~~~~~~~~~iiiv~NK~Dl~~  133 (179)
T cd01890          63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV----EAQTL-ANFYLALENNLEIIPVINKIDLPS  133 (179)
T ss_pred             CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc----cHhhH-HHHHHHHHcCCCEEEEEECCCCCc
Confidence            1 122356899999964  11111122222  2222211100    00000 012344457888899999999654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.33  E-value=8.7e-08  Score=92.98  Aligned_cols=126  Identities=15%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      ||+++||.++|||||+.+|   ++. |.....  ..+.. ..++.|..+.++++++++.+.+..          +.+.+ 
T Consensus         1 ni~ivG~~gsGKStL~~~L---l~~~g~~~~~--g~v~~-g~~~~d~~~~e~~r~~ti~~~~~~----------~~~~~-   63 (268)
T cd04170           1 NIALVGHSGSGKTTLAEAL---LYATGAIDRL--GSVED-GTTVSDYDPEEIKRKMSISTSVAP----------LEWKG-   63 (268)
T ss_pred             CEEEECCCCCCHHHHHHHH---HHhcCCCccC--CeecC-CcccCCCCHHHHhhcccccceeEE----------EEECC-
Confidence            8999999999999999999   443 221110  01110 123445555567788887554322          23322 


Q ss_pred             CCccccCCCCCce--eEEEEeeC--CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         175 PYFPVSTVPGHKG--QLVFGLIN--GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       175 ~~~~i~d~pGH~~--~l~~G~~~--g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      ..+.++|+|||.+  ......+.  ...++++....    |.... .......+...|++.++++|+++..+.
T Consensus        64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~----g~~~~-~~~~~~~~~~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQS----GVEVG-TEKLWEFADEAGIPRIIFINKMDRERA  131 (268)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCC----CCCHH-HHHHHHHHHHcCCCEEEEEECCccCCC
Confidence            2468899999964  10111111  12233332111    11111 111224667889999999999997654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12740 elongation factor G; Reviewed

Probab=98.33  E-value=1.2e-07  Score=103.57  Aligned_cols=121  Identities=21%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             eecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCcc
Q psy9643         100 IGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFP  178 (412)
Q Consensus       100 igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~  178 (412)
                      +||+|||||||+++|   ++. |.+...  .+++. ..+++|..+.|+++||++++....          +.+.+ ..+.
T Consensus         1 ig~~~~GKTTL~~~L---l~~~g~i~~~--~~~~~-~~~~~d~~~~e~~rgiTi~~~~~~----------~~~~~-~~i~   63 (668)
T PRK12740          1 VGHSGAGKTTLTEAI---LFYTGAIHRI--GEVED-GTTTMDFMPEERERGISITSAATT----------CEWKG-HKIN   63 (668)
T ss_pred             CCCCCCcHHHHHHHH---HHhcCCCccC--ccccC-CcccCCCChHHHhcCCCeeeceEE----------EEECC-EEEE
Confidence            699999999999999   554 433221  11111 136788888999999999765433          23332 3478


Q ss_pred             ccCCCCCce---eEEEEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         179 VSTVPGHKG---QLVFGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       179 i~d~pGH~~---~l~~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      ++|+|||.+   ....+.. ....++++....    |..... ...+..+...|++.+|+.|+++..+
T Consensus        64 liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~----~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         64 LIDTPGHVDFTGEVERALRVLDGAVVVVCAVG----GVEPQT-ETVWRQAEKYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             EEECCCcHHHHHHHHHHHHHhCeEEEEEeCCC----CcCHHH-HHHHHHHHHcCCCEEEEEECCCCCC
Confidence            899999964   1111111 122233332211    111110 0123566778999999999999765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.27  E-value=3.9e-07  Score=100.42  Aligned_cols=110  Identities=25%  Similarity=0.297  Sum_probs=62.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT  173 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~  173 (412)
                      ..+|+++||+|||||||+.+|.+   . .+                   ......||+...|.+.+          .+..
T Consensus       290 ~pvV~ImGhvd~GKTSLl~~Lr~---~-~v-------------------~~~e~~GIT~~iga~~v----------~~~~  336 (787)
T PRK05306        290 PPVVTIMGHVDHGKTSLLDAIRK---T-NV-------------------AAGEAGGITQHIGAYQV----------ETNG  336 (787)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh---C-Cc-------------------cccccCceeeeccEEEE----------EECC
Confidence            56899999999999999999932   1 10                   00113577776554332          2222


Q ss_pred             CCCccccCCCCCce--eEE-EEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         174 IPYFPVSTVPGHKG--QLV-FGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       174 ~~~~~i~d~pGH~~--~l~-~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                       ..++++|+|||.+  .+. .|.- .+..++++...    +|..+.. ...+..++.+|+..||++|++|..+
T Consensus       337 -~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAd----dGv~~qT-~e~i~~a~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        337 -GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAAD----DGVMPQT-IEAINHAKAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             -EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECC----CCCCHhH-HHHHHHHHhcCCcEEEEEECccccc
Confidence             2468899999975  111 1211 11223332111    1111111 1123678889999999999999754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.21  E-value=9.8e-07  Score=94.74  Aligned_cols=110  Identities=23%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      ..|+++||+|||||||..+|.+.-    .                   ......||+...|...          +.+.+.
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~----v-------------------~~~e~~GIT~~ig~~~----------v~~~~~  134 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTK----V-------------------AQGEAGGITQHIGAYH----------VENEDG  134 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC----c-------------------ccccCCceeecceEEE----------EEECCC
Confidence            578999999999999999993210    0                   0011246666544322          223222


Q ss_pred             CCccccCCCCCce--eE-EEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         175 PYFPVSTVPGHKG--QL-VFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       175 ~~~~i~d~pGH~~--~l-~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      ..+.+.|+|||.+  .+ ..|.-. +..++++...    +|..+.. ...+..++..+++.|++.||+|..+
T Consensus       135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~----dgv~~qT-~e~i~~~~~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAAD----DGVMPQT-IEAISHAKAANVPIIVAINKIDKPE  201 (587)
T ss_pred             cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECC----CCCCHhH-HHHHHHHHHcCCCEEEEEECccccc
Confidence            2578999999975  11 122111 1222332110    0111111 1123677889999999999999743

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.11  E-value=2.4e-06  Score=85.29  Aligned_cols=155  Identities=16%  Similarity=0.235  Sum_probs=82.9

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhcc-ccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccc---ccccccCc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM-EGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLST---IADSITDR  166 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~-~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~---~~~~~~~~  166 (412)
                      -++|+++++.||||||||||+|.|+..-. +|.-..+.+-..++  ..+..-.......++.+-.+ +.   +.+.+.+.
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~k--HEverGlsa~iS~~v~Gf~d-gk~~rlknPld~a  190 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQK--HEVERGLSADISLRVYGFDD-GKVVRLKNPLDEA  190 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhh--HHHhhccccceeEEEEEecC-CceEeecCcccHH
Confidence            45699999999999999999999942222 24333343322211  11222222233344443222 11   11111111


Q ss_pred             eee-ecCCC-CCccccCCCCCce---eEEEEeeCCe-----EEEEe------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         167 HIF-PYDTI-PYFPVSTVPGHKG---QLVFGLINGI-----PIMCM------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       167 ~~~-~~~~~-~~~~i~d~pGH~~---~l~~G~~~g~-----~vv~~------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                      ... -.+.. +-+.++|+-||.-   .-+.|-++-+     -+|..      .||+|+             -++-.++.+
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL-------------gi~~a~~lP  257 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL-------------GIALAMELP  257 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh-------------hhhhhhcCC
Confidence            000 01111 2346789999964   2222322211     11111      389998             688889999


Q ss_pred             EEEEEeccCCCCCCCCCccHHHHHHHHhhcc
Q psy9643         231 HLLATNAAGGLNPDYEVGDIMIIKDHINLMG  261 (412)
Q Consensus       231 ~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~  261 (412)
                      .|+++.+++-...+--.|-.-.+...+...+
T Consensus       258 viVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~  288 (527)
T COG5258         258 VIVVVTKIDMVPDDRFQGVVEEISALLKRVG  288 (527)
T ss_pred             EEEEEEecccCcHHHHHHHHHHHHHHHHHhc
Confidence            9999999987665544454455666666644

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.10  E-value=2.4e-06  Score=93.55  Aligned_cols=113  Identities=26%  Similarity=0.340  Sum_probs=63.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC-
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD-  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~-  172 (412)
                      ..+|+++||+|||||||+.+|++   ...                    ......|++...|.+.+        .+.+. 
T Consensus       244 ~p~V~IvGhvdvGKTSLld~L~~---~~~--------------------~~~e~~GiTq~i~~~~v--------~~~~~~  292 (742)
T CHL00189        244 PPIVTILGHVDHGKTTLLDKIRK---TQI--------------------AQKEAGGITQKIGAYEV--------EFEYKD  292 (742)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh---ccC--------------------ccccCCccccccceEEE--------EEEecC
Confidence            56899999999999999999932   100                    01122466654443321        12221 


Q ss_pred             CCCCccccCCCCCce--eEE-EEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         173 TIPYFPVSTVPGHKG--QLV-FGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~--~l~-~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      +...+.++|+|||..  .+. .|.- ....++++...    +|..+.. ...+..++..++..|+++|++|..+
T Consensus       293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~----dGv~~QT-~E~I~~~k~~~iPiIVViNKiDl~~  361 (742)
T CHL00189        293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAAD----DGVKPQT-IEAINYIQAANVPIIVAINKIDKAN  361 (742)
T ss_pred             CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECc----CCCChhh-HHHHHHHHhcCceEEEEEECCCccc
Confidence            224578899999964  111 1211 11222332111    1111111 1134677889999899999999765

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.09  E-value=1.8e-06  Score=79.33  Aligned_cols=125  Identities=21%  Similarity=0.248  Sum_probs=66.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccc-hhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLG-SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~-~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      ..||+++||.++|||||+.+|+..  .+... .+..      ..++++..+.++.+|++.....          ..+.+.
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~--~~~~~~~~~~------~~~~~~~~~~e~~~g~t~~~~~----------~~~~~~   63 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQ--SGTFRENEEV------EERVMDSNDLERERGITILAKN----------TAVTYK   63 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHH--cCCCCccCcc------cccccccchhHHhcccccccce----------eEEEEC
Confidence            469999999999999999999431  01111 1100      1244555666777888763321          122222


Q ss_pred             CCCCccccCCCCCce--eEEEEeeCCeE--EEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         173 TIPYFPVSTVPGHKG--QLVFGLINGIP--IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~--~l~~G~~~g~~--vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                       ...+.+.|+|||.+  .+....+.+..  +++.......    .+. ...-+..+...+++.+|+.||+|..+
T Consensus        64 -~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~----~~~-~~~~~~~~~~~~~p~iiv~NK~Dl~~  131 (194)
T cd01891          64 -DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP----MPQ-TRFVLKKALELGLKPIVVINKIDRPD  131 (194)
T ss_pred             -CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc----cHH-HHHHHHHHHHcCCCEEEEEECCCCCC
Confidence             23468899999964  11111112221  2222211110    011 00112334557899999999999764

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.81  E-value=1.3e-05  Score=86.21  Aligned_cols=20  Identities=55%  Similarity=0.785  Sum_probs=18.5

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      .|+++||+|||||||..+|.
T Consensus         8 ~V~i~Gh~~~GKTSLl~~l~   27 (586)
T PRK04004          8 IVVVLGHVDHGKTTLLDKIR   27 (586)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            57899999999999999994

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.75  E-value=1.5e-05  Score=85.68  Aligned_cols=20  Identities=55%  Similarity=0.846  Sum_probs=18.2

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      -|+++||+|||||||..+|+
T Consensus         6 iV~IiG~~d~GKTSLln~l~   25 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIR   25 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            37899999999999999994

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0468|consensus

Probab=97.65  E-value=2.4e-05  Score=82.75  Aligned_cols=262  Identities=16%  Similarity=0.133  Sum_probs=131.5

Q ss_pred             cchhhccccccccccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhh
Q psy9643          61 NDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLD  140 (412)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~  140 (412)
                      .-+|.+-+++..--..+.++++-   .+...--.+|++++||-.||||++++.|...-.   .+   +.+-.++.-...|
T Consensus        98 ~~k~q~~~~~~p~T~y~~~yl~~---l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tH---p~---~~~~~e~~lrytD  168 (971)
T KOG0468|consen   98 RLKFQIHERDVPETVYDLEYLAG---LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTH---PD---FSKNTEADLRYTD  168 (971)
T ss_pred             hhhhhhhhcccchhhhhHHHHHH---hccCcceEEEEEEeeccccChhHHHHhhceecc---cc---ccccccccccccc
Confidence            35677766663222244444442   445555578999999999999999999932111   00   1111111112255


Q ss_pred             hcCCCCceeEeeCcCcccccccccCceeeecCC----CCCccccCCCCCce---eEEE--EeeCCeEEEEecceeeeecC
Q psy9643         141 SISIRPKIGIICGSGLSTIADSITDRHIFPYDT----IPYFPVSTVPGHKG---QLVF--GLINGIPIMCMQGRFHYYEG  211 (412)
Q Consensus       141 ~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~----~~~~~i~d~pGH~~---~l~~--G~~~g~~vv~~qgr~H~yeg  211 (412)
                      .+..|.+||+.+-+          .+.++-.++    ..-+++.|+|||.+   ++..  +..+|+-+++ .    .-||
T Consensus       169 ~l~~E~eRg~sIK~----------~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvv-D----v~EG  233 (971)
T KOG0468|consen  169 TLFYEQERGCSIKS----------TPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVV-D----VAEG  233 (971)
T ss_pred             cchhhHhcCceEee----------cceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEE-E----cccC
Confidence            66678999999855          222222222    22368999999965   2222  2334443333 1    1122


Q ss_pred             CCCccccHHHHHHHHcC---CCEEEEEeccCCCCCCC--CCccH--------HHHHHHHhhccCCCCCCCCCCCCCCCC-
Q psy9643         212 YPLWKCAMPIRVMKLVG---VTHLLATNAAGGLNPDY--EVGDI--------MIIKDHINLMGFAGNNPLLGVNEDRFG-  277 (412)
Q Consensus       212 ~~~~~v~~~i~ll~~lG---v~~II~~n~~G~l~~~~--~~Gd~--------vi~~d~i~~~~~~~~~pl~g~~~~~~g-  277 (412)
                      .....-    ++++..+   ....+++||++.+--++  .|-|-        -.++++|.... .+++|...+-   .| 
T Consensus       234 VmlntE----r~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is~~s-~~~~~~~sP~---~gN  305 (971)
T KOG0468|consen  234 VMLNTE----RIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFS-KDDNPVVSPI---LGN  305 (971)
T ss_pred             ceeeHH----HHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhhhcc-cccccccccc---cCc
Confidence            111111    5555544   34455689999765543  34442        12334443222 1233332211   11 


Q ss_pred             CCCCCCcccccHHHHHHHHHHHHHcCCC------cceeeceEEE-----EecCccCCHHHH---H-----HHHHcCCcEE
Q psy9643         278 PRFPPMNKAYNKQLRAATLDIARDLNMS------SIVKEGVYSV-----IGGPNFETVAEL---N-----MLRICGVDAV  338 (412)
Q Consensus       278 ~~~~~~~~~~d~~Lr~~~~~~a~~~g~~------~~~~~Gvy~~-----~~GP~feT~AE~---~-----~~~~~Gad~V  338 (412)
                      .+|.+-..-||..|...++--++..|--      .++..-+|..     +.+-.+...+..   +     ++ +++..++
T Consensus       306 vcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rsFVeFILePlY-Ki~sq~i  384 (971)
T KOG0468|consen  306 VCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRSFVEFILEPLY-KIFSQVI  384 (971)
T ss_pred             eeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcccchhhhhhHhHHH-HHHHHHh
Confidence            3455555667777777777666665431      1222222221     112122222211   1     22 2457788


Q ss_pred             eCchhHHHHHHHHcCCc
Q psy9643         339 GMSTVHEVITAHHCGMT  355 (412)
Q Consensus       339 gMe~~pEa~~A~~~Gi~  355 (412)
                      ||+--.+--+-.++|+.
T Consensus       385 gd~~~~l~~~l~e~~v~  401 (971)
T KOG0468|consen  385 GDEKDSLKGLLAELGVR  401 (971)
T ss_pred             cchhhhhhhhhhhhccc
Confidence            88877766666666664

>cd04171 SelB SelB subfamily

Probab=97.55  E-value=4.4e-05  Score=66.90  Aligned_cols=22  Identities=64%  Similarity=0.899  Sum_probs=19.9

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +||+++|+.++|||||..+|++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~   22 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTG   22 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhC
Confidence            4899999999999999999953

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.19  E-value=0.00021  Score=64.09  Aligned_cols=22  Identities=59%  Similarity=0.842  Sum_probs=19.8

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ||+++|..++|||||+.+|++.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~   22 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYV   22 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHh
Confidence            6899999999999999999544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.99  E-value=0.00069  Score=70.19  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +++.++|+++||.++|||||+.+|+
T Consensus       170 ~~~~~~v~ivG~~n~GKStlin~ll  194 (435)
T PRK00093        170 EDEPIKIAIIGRPNVGKSSLINALL  194 (435)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHh
Confidence            3457999999999999999999993

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=96.89  E-value=0.002  Score=56.73  Aligned_cols=20  Identities=55%  Similarity=0.826  Sum_probs=18.3

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      .|+++|+.++|||||+.+|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~   21 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIR   21 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            38999999999999999994

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PLN03127 Elongation factor Tu; Provisional

Probab=96.73  E-value=0.0017  Score=67.81  Aligned_cols=102  Identities=32%  Similarity=0.491  Sum_probs=66.9

Q ss_pred             ecCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCCcc---Cccc--cchhhcccccccccccccc
Q psy9643           6 IDAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII---PLYP--NDKFEINKLNVFVPLINSR   79 (412)
Q Consensus         6 ~d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~   79 (412)
                      +|+. ++++.++++.|++++|..++|+++++|+|.+||+.|+++++.+.+..   .++.  ++....++++     .+++
T Consensus       187 iDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~-----~~~p  261 (447)
T PLN03127        187 VDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV-----LDKP  261 (447)
T ss_pred             eccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc-----cccc
Confidence            3884 67899999999999999999999999999999999998765433322   2221  2221222222     4556


Q ss_pred             chhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643          80 RGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        80 ~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      +.|++.++++-.-  +-.++.|-|-+|+=..-..+
T Consensus       262 fr~~I~~vf~v~g--~GtVvtG~v~~G~i~~Gd~v  294 (447)
T PLN03127        262 FLMPIEDVFSIQG--RGTVATGRVEQGTIKVGEEV  294 (447)
T ss_pred             eEeeEEEEEEcCC--ceEEEEEEEEccEEecCCEE
Confidence            7777777764322  22356777777754444444

>KOG1144|consensus

Probab=96.65  E-value=0.0032  Score=67.92  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             CCCCccccCCCCCce--eE-EEEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         173 TIPYFPVSTVPGHKG--QL-VFGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~--~l-~~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      .+|++-++|+|||..  ++ ..|.. -...+++. --+|..|   |.+ .-.+.+++.-.++-||..|+++.|-
T Consensus       538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvv-dImhGle---pqt-iESi~lLR~rktpFivALNKiDRLY  606 (1064)
T KOG1144|consen  538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVV-DIMHGLE---PQT-IESINLLRMRKTPFIVALNKIDRLY  606 (1064)
T ss_pred             CCCeeEEecCCCchhhhhhhhccccccceEEEEe-ehhccCC---cch-hHHHHHHHhcCCCeEEeehhhhhhc
Confidence            578999999999964  22 22321 12223322 2234333   221 1234788888899999999999764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.60  E-value=0.003  Score=57.15  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ....+|+++|+.++|||||+.+|+
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~   39 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALT   39 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHh
Confidence            346799999999999999999994

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01895 EngA2 EngA2 subfamily

Probab=96.58  E-value=0.0035  Score=54.90  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++||||++.+|++
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~   24 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLG   24 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhC
Confidence            57899999999999999999954

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12736 elongation factor Tu; Reviewed

Probab=96.52  E-value=0.0024  Score=65.67  Aligned_cols=101  Identities=31%  Similarity=0.477  Sum_probs=67.2

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCC-CccCccc--cchhhccccccccccccccchh
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEI-GIIPLYP--NDKFEINKLNVFVPLINSRRGY   82 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (412)
                      |+. ++++.+.++.|++++|.+++|++++.||+..||+...++..+|+ +.+.++.  ++....++++     .++++.|
T Consensus       139 D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~-----~~~p~r~  213 (394)
T PRK12736        139 DLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD-----TDKPFLM  213 (394)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC-----CCCCeEE
Confidence            884 67899999999999999999998999999999999876655554 3444442  2222222222     3456667


Q ss_pred             hhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643          83 AEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        83 ~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      ++-+++.-.  -+-.++.|-|-+|+=+.-..+
T Consensus       214 ~I~~~~~~~--g~G~Vv~G~v~~G~l~~gd~v  243 (394)
T PRK12736        214 PVEDVFTIT--GRGTVVTGRVERGTVKVGDEV  243 (394)
T ss_pred             EEEEEEecC--CcEEEEEEEEeecEEecCCEE
Confidence            766666432  233356777777755444444

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.49  E-value=0.0031  Score=65.10  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++||.++|||||+.+|+
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~  193 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALL  193 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            346899999999999999999994

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PLN03126 Elongation factor Tu; Provisional

Probab=96.40  E-value=0.0028  Score=66.73  Aligned_cols=101  Identities=31%  Similarity=0.455  Sum_probs=63.5

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC----------CCCCC-ccCccc--cchhhccccccc
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK----------EPEIG-IIPLYP--NDKFEINKLNVF   72 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~----------~~~~~-~~~~~~--~~~~~~~~~~~~   72 (412)
                      |+. +++..+.++.|++++|.++||++++.|+|.+||+.+.+.-          .+|+. ...++.  ++-..+++++  
T Consensus       208 Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~--  285 (478)
T PLN03126        208 DQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQ--  285 (478)
T ss_pred             cccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCc--
Confidence            874 5788999999999999999999999999999999886431          12221 112221  1111123332  


Q ss_pred             cccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643          73 VPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                         .++++.|++.++++-..  +-.++.|.|-+|+=..-..+
T Consensus       286 ---~~~p~r~~I~~vf~v~g--~GtVv~G~V~sG~i~~Gd~v  322 (478)
T PLN03126        286 ---TDLPFLLAVEDVFSITG--RGTVATGRVERGTVKVGETV  322 (478)
T ss_pred             ---cccceeeEEEEEEEeCC--ceEEEEEEEEcCeEecCCEE
Confidence               34567788777775322  23356788888854433333

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=96.25  E-value=0.0088  Score=51.91  Aligned_cols=22  Identities=14%  Similarity=0.151  Sum_probs=17.4

Q ss_pred             HHHHcCCCEEEEEeccCCCCCC
Q psy9643         223 VMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       223 ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      .+...++..+++.|++|..+..
T Consensus        96 ~~~~~~~~~iiv~NK~Dl~~~~  117 (158)
T cd01879          96 QLLELGLPVVVALNMIDEAEKR  117 (158)
T ss_pred             HHHHcCCCEEEEEehhhhcccc
Confidence            4566899999999999986643

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=96.18  E-value=0.0044  Score=63.67  Aligned_cols=97  Identities=33%  Similarity=0.466  Sum_probs=63.0

Q ss_pred             ecCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCC-ccCccc--cchhhccccccccccccccch
Q psy9643           6 IDAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG-IIPLYP--NDKFEINKLNVFVPLINSRRG   81 (412)
Q Consensus         6 ~d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~   81 (412)
                      +|+. +++..+.++.|++++|.+++|++++.|++.+||+.+.++.++|+. ...++.  ++....++++     .++++.
T Consensus       138 ~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~-----~~~p~r  212 (394)
T TIGR00485       138 CDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE-----TDKPFL  212 (394)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC-----CCCCeE
Confidence            3885 577889999999999999999999999999999998776655542 333432  2222223332     345566


Q ss_pred             hhhhccccCCCCeeeEEeeecccCCChh
Q psy9643          82 YAEKQVYSRDKPHCNIGTIGHVDHGKTT  109 (412)
Q Consensus        82 ~~~~~~~~~~k~~~ni~~igHVD~GKST  109 (412)
                      |++-++++-.-  +-.++.|-|-+|+=.
T Consensus       213 ~~V~~vf~~~g--~G~Vv~G~v~~G~l~  238 (394)
T TIGR00485       213 MPIEDVFSITG--RGTVVTGRVERGIVK  238 (394)
T ss_pred             EEEEEEEeeCC--ceEEEEEEEEeeEEe
Confidence            67666664322  223456666666433

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01894 EngA1 EngA1 subfamily

Probab=96.06  E-value=0.0026  Score=54.99  Aligned_cols=23  Identities=9%  Similarity=0.234  Sum_probs=18.2

Q ss_pred             HHHHHcCCCEEEEEeccCCCCCC
Q psy9643         222 RVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       222 ~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      ..++..+.+.+++.|+++..++.
T Consensus        99 ~~~~~~~~piiiv~nK~D~~~~~  121 (157)
T cd01894          99 KYLRKSKKPVILVVNKVDNIKEE  121 (157)
T ss_pred             HHHHhcCCCEEEEEECcccCChH
Confidence            56677888899999999886643

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1159 Era GTPase [General function prediction only]

Probab=95.99  E-value=0.014  Score=57.27  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=60.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT  173 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~  173 (412)
                      ..=++++|-...|||||+.+|.|.-- ..++.+    .         .+.-.+-+||...           +.       
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-sIvS~k----~---------QTTR~~I~GI~t~-----------~~-------   53 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKI-SIVSPK----P---------QTTRNRIRGIVTT-----------DN-------   53 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCce-EeecCC----c---------chhhhheeEEEEc-----------CC-------
Confidence            34578999999999999999943210 111110    0         1111344677651           11       


Q ss_pred             CCCccccCCCC-Cce---------eEEEEeeCCeEEEEec-ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         174 IPYFPVSTVPG-HKG---------QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       174 ~~~~~i~d~pG-H~~---------~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                       .++-.+|+|| |..         +-....+.++.++++- ...+.   ..+.. .+-+..++....+.|+++|+++.+.
T Consensus        54 -~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~---~~~~d-~~il~~lk~~~~pvil~iNKID~~~  128 (298)
T COG1159          54 -AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG---WGPGD-EFILEQLKKTKTPVILVVNKIDKVK  128 (298)
T ss_pred             -ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc---CCccH-HHHHHHHhhcCCCeEEEEEccccCC
Confidence             1234568888 643         1122245666665541 11111   11111 1112444555678889999999887


Q ss_pred             CCC
Q psy9643         243 PDY  245 (412)
Q Consensus       243 ~~~  245 (412)
                      ++.
T Consensus       129 ~~~  131 (298)
T COG1159         129 PKT  131 (298)
T ss_pred             cHH
Confidence            664

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=95.97  E-value=0.02  Score=63.77  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++||.++|||||..+|++
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg   25 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTG   25 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999965

>PRK12735 elongation factor Tu; Reviewed

Probab=95.89  E-value=0.0087  Score=61.57  Aligned_cols=101  Identities=32%  Similarity=0.456  Sum_probs=63.5

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC--CCC-CccCccc--cchhhccccccccccccccc
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE--PEI-GIIPLYP--NDKFEINKLNVFVPLINSRR   80 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~--~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~   80 (412)
                      |+. ++++.+.++.|++++|.+|+|++++.|++..||+.+.+...  +|+ +...++.  ++....++++     .++++
T Consensus       139 Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~-----~~~p~  213 (396)
T PRK12735        139 DMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERA-----IDKPF  213 (396)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCcc-----CCCCe
Confidence            884 77899999999999999999999999999999988865422  222 2233332  2222223332     34456


Q ss_pred             hhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643          81 GYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        81 ~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      .|++-++++-.  ..-.++.|-|-+|+=..-..+
T Consensus       214 r~~I~~~f~v~--g~Gtvv~G~v~~G~i~~gd~v  245 (396)
T PRK12735        214 LMPIEDVFSIS--GRGTVVTGRVERGIVKVGDEV  245 (396)
T ss_pred             EEEEEEEEecC--CceEEEEEEEEecEEeCCCEE
Confidence            66666666432  223346677777754444333

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=95.80  E-value=0.025  Score=49.84  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.2

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++|+.++|||||+.+|++
T Consensus         2 ~i~~~G~~~~GKssli~~l~~   22 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTR   22 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc
Confidence            789999999999999999943

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK00049 elongation factor Tu; Reviewed

Probab=95.66  E-value=0.01  Score=61.09  Aligned_cols=102  Identities=32%  Similarity=0.457  Sum_probs=65.6

Q ss_pred             ecCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC--CCCC-CccCccc--cchhhcccccccccccccc
Q psy9643           6 IDAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK--EPEI-GIIPLYP--NDKFEINKLNVFVPLINSR   79 (412)
Q Consensus         6 ~d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~--~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~   79 (412)
                      +|+. +++.++.++.|++++|.++||++++.||+..||+.+.+..  .+|+ +...++.  ++....++++     .+++
T Consensus       138 ~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-----~~~p  212 (396)
T PRK00049        138 CDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA-----IDKP  212 (396)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC-----CCCC
Confidence            3885 6788999999999999999999899999999999887532  1232 2334442  2222223322     4566


Q ss_pred             chhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643          80 RGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        80 ~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      +.|++.+++.-.  -.-.++.|-|-+|.-..-..+
T Consensus       213 ~r~~I~~~f~v~--g~G~Vv~G~v~~G~i~~gd~v  245 (396)
T PRK00049        213 FLMPIEDVFSIS--GRGTVVTGRVERGIIKVGEEV  245 (396)
T ss_pred             eEEEEEEEEeeC--CceEEEEEEEeeeEEecCCEE
Confidence            777777776432  223356777777754444333

>cd01884 EF_Tu EF-Tu subfamily

Probab=95.60  E-value=0.016  Score=53.82  Aligned_cols=42  Identities=62%  Similarity=0.976  Sum_probs=38.1

Q ss_pred             cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcC
Q psy9643           7 DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEG   48 (412)
Q Consensus         7 d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~   48 (412)
                      |. ++++..+.++.|++++|.++||+.++.|||..||+.+.+.
T Consensus       129 D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         129 DMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            87 5788999999999999999999989999999999988754

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00071 tufA elongation factor Tu

Probab=95.40  E-value=0.015  Score=60.16  Aligned_cols=41  Identities=56%  Similarity=0.909  Sum_probs=36.8

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE   47 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~   47 (412)
                      |.. ++++.+.++.|++++|.+++|++++.|++.+||+.+.+
T Consensus       139 D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        139 DQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            885 57889999999999999999998889999999998863

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=94.97  E-value=0.044  Score=60.71  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +...+|+++|+.++|||||..+|+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~  296 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRIL  296 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHh
Confidence            345679999999999999999994

>cd04124 RabL2 RabL2 subfamily

Probab=94.73  E-value=0.029  Score=49.57  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|+-++|||||+.+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~   21 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFL   21 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999994

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00880 Era_like Era (E

Probab=94.71  E-value=0.09  Score=44.49  Aligned_cols=17  Identities=29%  Similarity=0.538  Sum_probs=15.5

Q ss_pred             eeecccCCChhhhhHHh
Q psy9643          99 TIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        99 ~igHVD~GKSTl~~~l~  115 (412)
                      ++|+.++||||++.+|+
T Consensus         1 i~G~~gsGKstl~~~l~   17 (163)
T cd00880           1 LFGRTNAGKSSLLNALL   17 (163)
T ss_pred             CcCCCCCCHHHHHHHHh
Confidence            58999999999999994

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=94.53  E-value=0.035  Score=57.33  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=17.9

Q ss_pred             EEeeecccCCChhhhhHHh
Q psy9643          97 IGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~  115 (412)
                      |+++|+.++|||||..+|+
T Consensus         2 i~ivG~~nvGKStL~n~l~   20 (429)
T TIGR03594         2 VAIVGRPNVGKSTLFNRLT   20 (429)
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999994

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01882 BMS1 Bms1

Probab=94.51  E-value=0.051  Score=51.43  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=21.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++...|+++|+.++|||||+..|+
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~   60 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLV   60 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHH
Confidence            4556788999999999999999884

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=94.46  E-value=0.071  Score=49.50  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=18.5

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      +|+++|+.++|||||..+|.
T Consensus         2 ~vll~G~~~sGKTsL~~~l~   21 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLT   21 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHh
Confidence            68999999999999999993

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0463|consensus

Probab=93.95  E-value=0.038  Score=55.78  Aligned_cols=22  Identities=36%  Similarity=0.691  Sum_probs=19.0

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +-++++|.||+|||||.|-|+.
T Consensus       134 ~RVAVVGNVDAGKSTLLGVLTH  155 (641)
T KOG0463|consen  134 ARVAVVGNVDAGKSTLLGVLTH  155 (641)
T ss_pred             EEEEEEecccCCcceeEeeeee
Confidence            4568999999999999998853

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=93.61  E-value=0.038  Score=48.54  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ||+++|+.++|||||..+|+.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~   21 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKT   21 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhh
Confidence            789999999999999999953

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=93.61  E-value=0.076  Score=54.99  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=18.5

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      .|+++|+.++|||||..+|+
T Consensus         3 ~I~ivG~~~vGKStL~n~l~   22 (435)
T PRK00093          3 VVAIVGRPNVGKSTLFNRLT   22 (435)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999994

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=93.58  E-value=0.041  Score=46.68  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|+.++|||||+.+|+
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~   22 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLL   22 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            689999999999999999994

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>smart00053 DYNc Dynamin, GTPase

Probab=93.54  E-value=0.57  Score=45.00  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -.|+++|...+||||+..+|++.
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~   49 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGR   49 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCC
Confidence            35899999999999999999876

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01898 Obg Obg subfamily

Probab=93.36  E-value=0.04  Score=48.48  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ||+++|+.++|||||..+|++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~   22 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISN   22 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhc
Confidence            799999999999999999953

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=93.32  E-value=0.066  Score=61.27  Aligned_cols=120  Identities=21%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccc-ccCce----
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADS-ITDRH----  167 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~-~~~~~----  167 (412)
                      ++.|++.-|-+-| ||||.+.|.+.   .                    ....-.-|||..-|.+.++-. ....+    
T Consensus       461 ~~~~~~~~~~~~~-KTtLLD~iR~t---~--------------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~  516 (1049)
T PRK14845        461 ETHNFIANGILVH-NTTLLDKIRKT---R--------------------VAKKEAGGITQHIGATEIPIDVIKKICGPLL  516 (1049)
T ss_pred             ccCcceeeeeecc-cccHHHHHhCC---C--------------------cccccCCCceeccceEEEEeccccccccccc
Confidence            3556654444444 99999999321   0                    111234688876666654321 11100    


Q ss_pred             -eeecC-CCCCccccCCCCCce--eE-EEEee-CCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         168 -IFPYD-TIPYFPVSTVPGHKG--QL-VFGLI-NGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       168 -~~~~~-~~~~~~i~d~pGH~~--~l-~~G~~-~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                       ..... .+|++.+.|+|||..  .+ ..+.. ....++++...    +|..+. ..-.+..++..++..+++.||+|..
T Consensus       517 ~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~----~Gi~~q-T~e~I~~lk~~~iPiIVViNKiDL~  591 (1049)
T PRK14845        517 KLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDIN----EGFKPQ-TIEAINILRQYKTPFVVAANKIDLI  591 (1049)
T ss_pred             ccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECc----ccCCHh-HHHHHHHHHHcCCCEEEEEECCCCc
Confidence             01122 468899999999965  11 12211 11222232211    121221 1113467788899989999999965

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=93.23  E-value=0.095  Score=58.05  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|+.++|||||+.+|+
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~  471 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLT  471 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            5799999999999999999994

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.11  E-value=0.061  Score=40.67  Aligned_cols=25  Identities=32%  Similarity=0.231  Sum_probs=21.4

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME  120 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~  120 (412)
                      +..+.|+.++||||+.+++.-.|+-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4579999999999999999766664

>PRK04213 GTP-binding protein; Provisional

Probab=92.95  E-value=0.13  Score=47.04  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+++|..++|||||+.+|++
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~   31 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTG   31 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999999943

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=92.65  E-value=0.08  Score=47.95  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ....+|+++|+.++|||||+.+|+
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~   45 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALT   45 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHh
Confidence            346789999999999999999994

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=92.46  E-value=0.075  Score=45.67  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.|+++|++++||||++.+|+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~   22 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALA   22 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999994

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01878 HflX HflX subfamily

Probab=92.40  E-value=0.075  Score=48.78  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|+.++|||||+.+|++
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~   63 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTG   63 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhc
Confidence            3357999999999999999999943

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=92.28  E-value=0.15  Score=53.70  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|+.++|||||+.+|+
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~  232 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLA  232 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999999999994

>cd04114 Rab30 Rab30 subfamily

Probab=92.14  E-value=0.12  Score=45.55  Aligned_cols=25  Identities=32%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .|...+|+++|+-++|||||+.+++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~   28 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFT   28 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999999999994

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=92.06  E-value=0.081  Score=50.66  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ||+|||.++|||||.+-|++++
T Consensus        56 vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          56 VGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             EEEECCCCCcHHHHHHHHhCcc
Confidence            7999999999999999997754

>KOG1143|consensus

Probab=91.95  E-value=0.11  Score=52.65  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=42.4

Q ss_pred             ccccCCCCCce---eEEEEee---CC-eEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         177 FPVSTVPGHKG---QLVFGLI---NG-IPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       177 ~~i~d~pGH~~---~l~~G~~---~g-~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      ++++|-.||..   .-+.|-.   .. +.+++.       .+|+|+             -++..|.+.-.+++.|++...
T Consensus       251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-------------gl~~AL~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-------------GLIAALNIPFFVLVTKMDLVD  317 (591)
T ss_pred             EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-------------HHHHHhCCCeEEEEEeecccc
Confidence            57889999965   2223321   11 122222       378887             788999999999999999877


Q ss_pred             CCCCCccHHHHHHHHhh
Q psy9643         243 PDYEVGDIMIIKDHINL  259 (412)
Q Consensus       243 ~~~~~Gd~vi~~d~i~~  259 (412)
                      +.   |---.++|.-++
T Consensus       318 ~~---~~~~tv~~l~nl  331 (591)
T KOG1143|consen  318 RQ---GLKKTVKDLSNL  331 (591)
T ss_pred             ch---hHHHHHHHHHHH
Confidence            53   333345555554

>cd04155 Arl3 Arl3 subfamily

Probab=91.82  E-value=0.11  Score=45.96  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...+.|+++|+.++|||||..+|++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~   36 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLAS   36 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhc
Confidence            3378899999999999999999943

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG2229 Predicted GTPase [General function prediction only]

Probab=91.76  E-value=0.33  Score=44.54  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -.-|+++|-+|+||||.+++++.
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~   32 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSD   32 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhc
Confidence            35689999999999999999953

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=91.73  E-value=0.37  Score=42.74  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.8

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.|+++|-.++|||||+.+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~   21 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHL   21 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999993

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=91.56  E-value=0.09  Score=48.89  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +...||+++|+.++|||||+.+++
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~   43 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLI   43 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHH
Confidence            347899999999999999999994

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1084 Predicted GTPase [General function prediction only]

Probab=91.43  E-value=0.21  Score=49.82  Aligned_cols=128  Identities=18%  Similarity=0.224  Sum_probs=69.3

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT  173 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~  173 (412)
                      ...|+++|+.+.|||||+..||+.-.+  +..+.+                 -..||.+|-              +.+..
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPF-----------------TTK~i~vGh--------------fe~~~  214 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPF-----------------TTKGIHVGH--------------FERGY  214 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCc-----------------cccceeEee--------------eecCC
Confidence            456889999999999999999653221  211111                 113455431              11111


Q ss_pred             CCCccccCCCCCce----eEEE---------EeeCCeEEEEecceeeeecCCCCccccHHH-HHHHHcCCCEEEEEeccC
Q psy9643         174 IPYFPVSTVPGHKG----QLVF---------GLINGIPIMCMQGRFHYYEGYPLWKCAMPI-RVMKLVGVTHLLATNAAG  239 (412)
Q Consensus       174 ~~~~~i~d~pGH~~----~l~~---------G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i-~ll~~lGv~~II~~n~~G  239 (412)
                      . .+.++|+||-=|    ++-.         --++|..+.++.-..+.  ||+......-. .+=..+....++++||+|
T Consensus       215 ~-R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c--gy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D  291 (346)
T COG1084         215 L-RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC--GYSLEEQISLLEEIKELFKAPIVVVINKID  291 (346)
T ss_pred             c-eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc--CCCHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            1 457899999543    1100         01345555555544443  55555443222 223345566777899998


Q ss_pred             CCCCCCCCccHHHHHHHHhhcc
Q psy9643         240 GLNPDYEVGDIMIIKDHINLMG  261 (412)
Q Consensus       240 ~l~~~~~~Gd~vi~~d~i~~~~  261 (412)
                      -..+    .++-.+...+...+
T Consensus       292 ~~~~----e~~~~~~~~~~~~~  309 (346)
T COG1084         292 IADE----EKLEEIEASVLEEG  309 (346)
T ss_pred             ccch----hHHHHHHHHHHhhc
Confidence            7543    34555555555544

>cd01858 NGP_1 NGP-1

Probab=91.40  E-value=0.26  Score=43.50  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|-.+.|||||+.+|.
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~  123 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLR  123 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHh
Confidence            46889999999999999999994

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=90.83  E-value=0.28  Score=44.59  Aligned_cols=25  Identities=24%  Similarity=0.571  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +..+.++++|....|||||+.+|++
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~  139 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKR  139 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhC
Confidence            3357899999999999999999943

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=90.62  E-value=0.15  Score=44.77  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      |.++|+.++|||||+..|...
T Consensus         3 v~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    3 VQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999999543

>PRK13948 shikimate kinase; Provisional

Probab=90.41  E-value=0.17  Score=46.42  Aligned_cols=29  Identities=21%  Similarity=0.476  Sum_probs=25.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++.||+++|..++||||+...|...|.
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg   35 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALM   35 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            67789999999999999999999976554

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=90.30  E-value=0.17  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .+|.++|..++||||+++.|++.
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999765

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=90.12  E-value=0.15  Score=48.80  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++||.++|||||...|.+.+.
T Consensus        33 ~~i~G~nGsGKSTL~~~l~GLl~   55 (235)
T COG1122          33 VLLIGPNGSGKSTLLKLLNGLLK   55 (235)
T ss_pred             EEEECCCCCCHHHHHHHHcCcCc
Confidence            57999999999999999977554

>cd01862 Rab7 Rab7 subfamily

Probab=90.09  E-value=0.17  Score=44.50  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=19.2

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|+.++|||||+.+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~   21 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYV   21 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999994

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=90.03  E-value=0.19  Score=41.82  Aligned_cols=20  Identities=40%  Similarity=0.602  Sum_probs=18.4

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |+++|..++|||||+.+|++
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999954

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00625 shikimate kinase; Provisional

Probab=90.00  E-value=0.18  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.268  Sum_probs=20.9

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .||.++|+.++||||+++.|...+
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999996543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=89.97  E-value=0.17  Score=44.95  Aligned_cols=20  Identities=45%  Similarity=0.596  Sum_probs=18.5

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      +|+++||.++|||||..+|.
T Consensus         3 ~i~~iG~~~~GKstl~~~l~   22 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQ   22 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            58999999999999999984

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=89.91  E-value=0.19  Score=45.45  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .||+++|..++||||++..|.+.+
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHc
Confidence            379999999999999999996543

>TIGR00235 udk uridine kinase

Probab=89.72  E-value=0.23  Score=46.06  Aligned_cols=26  Identities=31%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      |+..-|+++|..++|||||+.+|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            33567899999999999999999654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=89.57  E-value=0.19  Score=43.38  Aligned_cols=19  Identities=37%  Similarity=0.553  Sum_probs=17.9

Q ss_pred             EEeeecccCCChhhhhHHh
Q psy9643          97 IGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~  115 (412)
                      |+++|+.++|||||+..|+
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            7899999999999999995

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=89.54  E-value=0.2  Score=46.03  Aligned_cols=24  Identities=38%  Similarity=0.493  Sum_probs=21.3

Q ss_pred             EEeeecccCCChhhhhHHhhhccc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLME  120 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~~  120 (412)
                      |+|.|..+|||||++.+|...|.+
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCc
Confidence            789999999999999999776654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05480 uridine/cytidine kinase; Provisional

Probab=89.41  E-value=0.24  Score=45.88  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..-|++.|..++|||||+..|.+.+
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999996543

>cd04163 Era Era subfamily

Probab=89.29  E-value=0.23  Score=42.61  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|+++|..++||||++.++++
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            35689999999999999999943

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=89.22  E-value=0.31  Score=45.28  Aligned_cols=29  Identities=31%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++.+-|++.|-++||||||+.+++..|.
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~   38 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALK   38 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHH
Confidence            34457888999999999999999976653

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=89.17  E-value=0.24  Score=37.80  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      |++.|..++||||++.+|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999544

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=88.99  E-value=0.22  Score=42.53  Aligned_cols=20  Identities=55%  Similarity=0.625  Sum_probs=18.4

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      +|+++|+.++|||||+.+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~   21 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQ   21 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHc
Confidence            58999999999999999993

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=88.74  E-value=0.25  Score=41.19  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |++.|-.++||||++..|..
T Consensus         2 I~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999954

...

>COG1160 Predicted GTPases [General function prediction only]

Probab=88.72  E-value=0.67  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=21.4

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+-|++||....|||||+.+|+
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~il  199 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAIL  199 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhc
Confidence            57999999999999999999993

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=88.59  E-value=0.23  Score=46.87  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ||++|-.+|||||++..|.+.+
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999999996654

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=88.58  E-value=0.48  Score=41.72  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+++++|+...||||+..+|++
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~  122 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLN  122 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHc
Confidence            57789999999999999999943

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK06696 uridine kinase; Validated

Probab=88.56  E-value=0.31  Score=45.85  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +..+-|+|.|..++||||++..|...|
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l   46 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEI   46 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            346788999999999999999996655

>PRK13949 shikimate kinase; Provisional

Probab=88.49  E-value=0.28  Score=44.27  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +|.++|..++||||+...|.+.+.
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999976543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=88.27  E-value=0.27  Score=45.14  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      |+++|..++||||++..|.+.+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999996644

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=88.06  E-value=0.34  Score=47.88  Aligned_cols=28  Identities=29%  Similarity=0.228  Sum_probs=22.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      |...-|||+|-+++||||++..|.+.+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4456789999999999999988865553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=88.02  E-value=0.86  Score=46.81  Aligned_cols=106  Identities=23%  Similarity=0.241  Sum_probs=76.3

Q ss_pred             eEEeecCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcC-----CCCCCCccCccc-cchhhcccccccc
Q psy9643           2 AVYYIDAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEG-----KEPEIGIIPLYP-NDKFEINKLNVFV   73 (412)
Q Consensus         2 ~~~~~d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~   73 (412)
                      ||=+||..  |++=.|-|.-|+..|+...||+-++.|+|.-||++.-+=     ..+|+.-..++. =+.++.|+++   
T Consensus       151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~~~~p~~~---  227 (428)
T COG5256         151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPPERP---  227 (428)
T ss_pred             EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhccCCCCCC---
Confidence            34445773  888899999999999999999999999999999887531     235666555553 3588888888   


Q ss_pred             ccccccchhhhhccccCCCCeeeEEeeecccCCChhhhhHH
Q psy9643          74 PLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                        .|++..++.-++++ - .-++-+.+|-|-+|.=+.-.-+
T Consensus       228 --~d~Plr~pI~~v~~-i-~~~gtv~vGrVEsG~i~~g~~v  264 (428)
T COG5256         228 --LDKPLRLPIQDVYS-I-SGIGTVPVGRVESGVIKPGQKV  264 (428)
T ss_pred             --CCCCeEeEeeeEEE-e-cCCceEEEEEEeeeeeccCCEE
Confidence              78888888887765 1 1344466777777754444333

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=88.01  E-value=0.3  Score=42.42  Aligned_cols=21  Identities=14%  Similarity=0.287  Sum_probs=19.3

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|..++|||||+.+++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~   21 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYC   21 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999994

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK08118 topology modulation protein; Reviewed

Probab=87.95  E-value=0.32  Score=43.84  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .|.|+|-.++||||++..|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999543

>cd01855 YqeH YqeH

Probab=87.95  E-value=0.53  Score=42.86  Aligned_cols=21  Identities=29%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+++++|..+.|||||+.+|.
T Consensus       128 ~~~~~~G~~nvGKStliN~l~  148 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALL  148 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHH
Confidence            578999999999999999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=87.93  E-value=0.27  Score=46.52  Aligned_cols=23  Identities=39%  Similarity=0.498  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +.+|||.++|||||.+.|++-+.
T Consensus        35 vtViGsNGAGKSTlln~iaG~l~   57 (263)
T COG1101          35 VTVIGSNGAGKSTLLNAIAGDLK   57 (263)
T ss_pred             EEEEcCCCccHHHHHHHhhCccc
Confidence            45899999999999999987664

>PRK13947 shikimate kinase; Provisional

Probab=87.80  E-value=0.33  Score=43.23  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ||+++|..++||||+...|...|
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~l   25 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTL   25 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh
Confidence            89999999999999999996654

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=87.71  E-value=0.41  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=20.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+|+|+.++|||||+.+|..
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~  241 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLAN  241 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999999954

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=87.71  E-value=0.32  Score=42.26  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ||.++|..++||||+++.|...+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            68999999999999999996443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd04159 Arl10_like Arl10-like subfamily

Probab=87.64  E-value=0.31  Score=41.57  Aligned_cols=20  Identities=40%  Similarity=0.534  Sum_probs=18.1

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |+++|+.++|||||..+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~   21 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAG   21 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHcc
Confidence            68999999999999999943

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=87.59  E-value=0.43  Score=44.76  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CCeeeEEeeecccCCChhhhhHH
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      .+.+.|+++|..+.|||||+.++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~   33 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRH   33 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHH
Confidence            55789999999999999999998

>cd00157 Rho Rho (Ras homology) family

Probab=87.57  E-value=0.34  Score=42.44  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++|+++|..++|||||+.+|++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~   22 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTT   22 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999943

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01864 Rab19 Rab19 subfamily

Probab=87.53  E-value=0.36  Score=42.40  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|..++|||||+.++.
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~   24 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFK   24 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHh
Confidence            5799999999999999999993

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=87.45  E-value=0.35  Score=42.67  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=18.4

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |+++|...+|||||+.+|++
T Consensus         1 V~v~G~~ssGKSTliNaLlG   20 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLG   20 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEcCCCCCHHHHHHHHHh
Confidence            68999999999999999964

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=87.44  E-value=0.34  Score=44.57  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++|+++|..++|||||+.+|++
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g   23 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRG   23 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            6799999999999999999955

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=87.40  E-value=0.38  Score=41.85  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      |.++|+++|..++|||||+.+++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~   23 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFI   23 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH
Confidence            35789999999999999999994

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=87.33  E-value=0.34  Score=42.02  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|..++|||||+.+++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~   21 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFT   21 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999999994

Rab GTPases are implicated in vesicle trafficking.

>cd00154 Rab Rab family

Probab=87.32  E-value=0.33  Score=41.28  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++|+++|..++||||++.++.+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999943

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=87.30  E-value=0.32  Score=42.99  Aligned_cols=18  Identities=50%  Similarity=0.593  Sum_probs=17.1

Q ss_pred             EEeeecccCCChhhhhHH
Q psy9643          97 IGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l  114 (412)
                      |.+||-+++|||||+.+|
T Consensus         4 imliG~~g~GKTTL~q~L   21 (143)
T PF10662_consen    4 IMLIGPSGSGKTTLAQAL   21 (143)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678999999999999999

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=87.19  E-value=0.37  Score=42.98  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+|+++|+.++|||||..++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999953

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=87.16  E-value=0.3  Score=45.62  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|+.++|||||..+|...||
T Consensus        31 ~~i~G~NGsGKSTll~~i~~~l~   53 (213)
T cd03279          31 FLICGPTGAGKSTILDAITYALY   53 (213)
T ss_pred             EEEECCCCCCHHHHHHHheeeEe
Confidence            47999999999999999975554

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=87.11  E-value=0.36  Score=41.14  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            36899999999999999996643

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=86.84  E-value=0.37  Score=44.21  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +||+++|..++|||||...|+
T Consensus         1 ~~i~lvG~~g~GKSsl~N~il   21 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTIL   21 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhh
Confidence            589999999999999999994

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=86.82  E-value=0.35  Score=44.81  Aligned_cols=22  Identities=32%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          29 LALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999997754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=86.77  E-value=0.39  Score=39.65  Aligned_cols=20  Identities=30%  Similarity=0.415  Sum_probs=18.1

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |.++|..++|||||+.+|.+
T Consensus         2 I~V~G~~g~GKTsLi~~l~~   21 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCG   21 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhc
Confidence            68999999999999999943

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=86.77  E-value=0.38  Score=44.55  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhccc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLME  120 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~  120 (412)
                      .+++||..++|||||++-|.++..-
T Consensus        41 TlaiIG~NGSGKSTLakMlaGmi~P   65 (267)
T COG4167          41 TLAIIGENGSGKSTLAKMLAGMIEP   65 (267)
T ss_pred             EEEEEccCCCcHhHHHHHHhcccCC
Confidence            4688999999999999999887653

>cd04154 Arl2 Arl2 subfamily

Probab=86.75  E-value=0.43  Score=42.39  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.|+++|+.++|||||+.+++
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~   35 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLL   35 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHc
Confidence            5778999999999999999994

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK06217 hypothetical protein; Validated

Probab=86.65  E-value=0.42  Score=43.43  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .+|+++|-.++||||++.+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999544

>PRK03839 putative kinase; Provisional

Probab=86.59  E-value=0.4  Score=43.25  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      +|+++|..++||||++++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999554

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=86.52  E-value=0.38  Score=44.17  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        28 ALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999997753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG1532|consensus

Probab=86.51  E-value=0.79  Score=44.87  Aligned_cols=147  Identities=15%  Similarity=0.196  Sum_probs=78.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhcccccc-------chh----hH---HHHHHH--HHHHhhhcCCCCceeEeeCcCcc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGML-------GSY----TY---ELIQSI--AKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~-------~~~----~~---~~~~~~--~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      .+-|.++|--++||||.+.+|..-+.....       +.-    .+   -.++..  +..+|++...-|-=||+.-..|.
T Consensus        19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF   98 (366)
T KOG1532|consen   19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF   98 (366)
T ss_pred             CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence            456788999999999999999543332100       000    00   012222  34567777788888887643332


Q ss_pred             cc--c---ccccCceeeecCCCCCccccCCCCCceeEEEEeeCCe----------EEEE---e-cceeeeecCCCCcccc
Q psy9643         158 TI--A---DSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGI----------PIMC---M-QGRFHYYEGYPLWKCA  218 (412)
Q Consensus       158 ~~--~---~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~----------~vv~---~-qgr~H~yeg~~~~~v~  218 (412)
                      ..  .   ..++...     +...+-++|+||.-.-+... ..|.          +.++   + ..|-|. .-.=++..-
T Consensus        99 ~tk~dqv~~~iek~~-----~~~~~~liDTPGQIE~FtWS-AsGsIIte~lass~ptvv~YvvDt~rs~~-p~tFMSNMl  171 (366)
T KOG1532|consen   99 ATKFDQVIELIEKRA-----EEFDYVLIDTPGQIEAFTWS-ASGSIITETLASSFPTVVVYVVDTPRSTS-PTTFMSNML  171 (366)
T ss_pred             HHHHHHHHHHHHHhh-----cccCEEEEcCCCceEEEEec-CCccchHhhHhhcCCeEEEEEecCCcCCC-chhHHHHHH
Confidence            21  1   1111111     12235689999975322221 1121          2222   1 123222 000012223


Q ss_pred             HHHHHHHHcCCCEEEEEeccCCCCCCCCC
Q psy9643         219 MPIRVMKLVGVTHLLATNAAGGLNPDYEV  247 (412)
Q Consensus       219 ~~i~ll~~lGv~~II~~n~~G~l~~~~~~  247 (412)
                      |+.-++.+..+..|++.|+++-.+.++..
T Consensus       172 YAcSilyktklp~ivvfNK~Dv~d~~fa~  200 (366)
T KOG1532|consen  172 YACSILYKTKLPFIVVFNKTDVSDSEFAL  200 (366)
T ss_pred             HHHHHHHhccCCeEEEEecccccccHHHH
Confidence            35568888899999999999887766543

>PLN00043 elongation factor 1-alpha; Provisional

Probab=86.25  E-value=0.89  Score=47.66  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC-----CCCCccCccc-cchhhccccccccccccccchhhh
Q psy9643          11 AEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE-----PEIGIIPLYP-NDKFEINKLNVFVPLINSRRGYAE   84 (412)
Q Consensus        11 ~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   84 (412)
                      ++-++-+..|++++|.+.||+.++.|+|.-||+.+.+=.+     +|+.-..++. =+.+..++++     .++++.|++
T Consensus       164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~~p~~~-----~~~plr~~I  238 (447)
T PLN00043        164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRP-----SDKPLRLPL  238 (447)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcCCCccc-----cCCCcEEEE
Confidence            4445566679999999999998899999999877643111     3332223332 1224444443     355667887


Q ss_pred             hccccCCCCeeeEEeeecccCCChh
Q psy9643          85 KQVYSRDKPHCNIGTIGHVDHGKTT  109 (412)
Q Consensus        85 ~~~~~~~k~~~ni~~igHVD~GKST  109 (412)
                      .+++.-.  ..-.++.|.|-+|.-.
T Consensus       239 ~~v~~~~--g~G~vv~G~V~~G~l~  261 (447)
T PLN00043        239 QDVYKIG--GIGTVPVGRVETGVIK  261 (447)
T ss_pred             EEEEEeC--CcEEEEEEEEECCEEe
Confidence            7776432  2334677888888533

>cd00876 Ras Ras family

Probab=86.23  E-value=0.4  Score=41.24  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.8

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++|..++|||||+.++++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999999943

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=86.22  E-value=0.44  Score=43.52  Aligned_cols=23  Identities=39%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .-|++++|-.++|||||..+|++
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~   47 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLA   47 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            45889999999999999999954

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=86.21  E-value=0.4  Score=44.41  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=86.18  E-value=0.51  Score=45.15  Aligned_cols=26  Identities=31%  Similarity=0.339  Sum_probs=21.8

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +.+| +|+|..++|||||..+|...|.
T Consensus        25 ~~~~-~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          25 PQFN-AITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCeE-EEECCCCCCHHHHHHHHHHHhc
Confidence            3455 6999999999999999977665

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd01866 Rab2 Rab2 subfamily

Probab=86.15  E-value=0.47  Score=41.93  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+|+++|..++|||||+.+++
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~   25 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFT   25 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999994

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=86.14  E-value=0.4  Score=46.52  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||.+.|++.+.
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhccCC
Confidence            47999999999999999988765

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=86.12  E-value=0.39  Score=45.26  Aligned_cols=22  Identities=45%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          29 HGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6899999999999999997754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd01892 Miro2 Miro2 subfamily

Probab=85.96  E-value=0.53  Score=41.96  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      |++.++|+++|..+.|||||+.+++
T Consensus         1 ~~~~~kv~~vG~~~vGKTsli~~~~   25 (169)
T cd01892           1 QRNVFLCFVLGAKGSGKSALLRAFL   25 (169)
T ss_pred             CCeEEEEEEECCCCCcHHHHHHHHh
Confidence            4668999999999999999999994

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=85.94  E-value=0.42  Score=47.45  Aligned_cols=18  Identities=44%  Similarity=0.601  Sum_probs=16.6

Q ss_pred             EEeeecccCCChhhhhHH
Q psy9643          97 IGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l  114 (412)
                      +|+|||.++|||||...+
T Consensus        35 ~GIIG~SGAGKSTLiR~i   52 (339)
T COG1135          35 FGIIGYSGAGKSTLLRLI   52 (339)
T ss_pred             EEEEcCCCCcHHHHHHHH
Confidence            599999999999999777

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=85.90  E-value=0.44  Score=41.38  Aligned_cols=20  Identities=30%  Similarity=0.331  Sum_probs=18.3

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      .|+++|+.++|||||+.+++
T Consensus         1 ki~iiG~~~~GKssli~~~~   20 (158)
T cd00878           1 RILILGLDGAGKTTILYKLK   20 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHh
Confidence            47899999999999999994

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK08233 hypothetical protein; Provisional

Probab=85.87  E-value=0.54  Score=42.00  Aligned_cols=24  Identities=38%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .-|+|.|-.++||||++.+|...+
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            557889999999999999996543

>cd01861 Rab6 Rab6 subfamily

Probab=85.70  E-value=0.48  Score=41.13  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=18.6

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      +|+++|+.++|||||+.+++
T Consensus         2 ki~liG~~~~GKSsli~~l~   21 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFM   21 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999994

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=85.69  E-value=0.44  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=85.67  E-value=0.43  Score=46.72  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|+.++|||||...|++.+.
T Consensus        35 ~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         35 YYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999987543

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]

Probab=85.46  E-value=1.8  Score=43.98  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             CCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEE
Q psy9643         280 FPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAF  359 (412)
Q Consensus       280 ~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i  359 (412)
                      ..+.+-+|++.|++.+.++|++.+++  ++..+     .|.+.|.|-.-...  |                 .|+|.+.|
T Consensus       260 ~~D~~~~~~~~l~~~L~~~A~~~~Ip--~Q~~v-----~~~ggTDA~a~~~~--g-----------------~gvpta~I  313 (355)
T COG1363         260 VKDASGIYHPKLRKFLLELAEKNNIP--YQVDV-----SPGGGTDAGAAHLT--G-----------------GGVPTALI  313 (355)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHcCCC--eEEEe-----cCCCCccHHHHHHc--C-----------------CCCceEEE
Confidence            34556789999999999999999999  66553     45477876543333  2                 37999999


Q ss_pred             EeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy9643         360 SLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLN  409 (412)
Q Consensus       360 ~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~  409 (412)
                      ++-+.|-+.   .-+-++-++        ...+.+||.+++.++..+.++
T Consensus       314 gip~ry~Hs---~~e~~~~~D--------~~~~~~Ll~~~i~~~~~~~~~  352 (355)
T COG1363         314 GIPTRYIHS---PVEVAHLDD--------LEATVKLLVAYLESLDRETVE  352 (355)
T ss_pred             ecccccccC---cceeecHHH--------HHHHHHHHHHHHHhcchhhhc
Confidence            999998842   112233333        334567888888887665543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=85.44  E-value=0.43  Score=43.60  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999997754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG1423|consensus

Probab=85.42  E-value=0.96  Score=44.93  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             CCCCCCCeeechhhhhhcCC-CCCCCccCccccchhhccccccccccccccchhhhhccccCCCCeeeEEeeecccCCCh
Q psy9643          30 WKGDEVPFVKGSALCALEGK-EPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKT  108 (412)
Q Consensus        30 ~~~~~~p~~~gsal~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~~igHVD~GKS  108 (412)
                      |+...++.-++++++++-|- +++-.+.++|+             +..-++.      ....+| .++|++||-.+.|||
T Consensus        27 fssa~~~~~~~~~~k~~~G~s~~etsv~p~~p-------------a~~esrd------e~e~~k-~L~vavIG~PNvGKS   86 (379)
T KOG1423|consen   27 FSSASTSTYRERVEKLFFGYSDWETSVGPLYP-------------AALESRD------EEEAQK-SLYVAVIGAPNVGKS   86 (379)
T ss_pred             eecCCccchhhhhhhhhccccCcccccccCcc-------------ccccCCC------chhcce-EEEEEEEcCCCcchh
Confidence            55666777777777777551 22223333321             1111111      112244 899999999999999


Q ss_pred             hhhhHHh
Q psy9643         109 TLTAAIT  115 (412)
Q Consensus       109 Tl~~~l~  115 (412)
                      ||+.++.
T Consensus        87 tLtN~mi   93 (379)
T KOG1423|consen   87 TLTNQMI   93 (379)
T ss_pred             hhhhHhh
Confidence            9999994

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=85.37  E-value=0.46  Score=44.82  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          29 LAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=85.36  E-value=0.47  Score=42.85  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||.+.|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999997653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=85.32  E-value=0.48  Score=44.29  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||.+.|++.+
T Consensus        15 ~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         15 HIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            35899999999999999997653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=85.30  E-value=0.47  Score=43.98  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01893 Miro1 Miro1 subfamily

Probab=85.29  E-value=0.52  Score=41.60  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=18.6

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      .|+++|+.++|||||+.++.
T Consensus         2 kv~ivG~~~vGKTsl~~~l~   21 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLV   21 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999994

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=85.24  E-value=0.35  Score=40.07  Aligned_cols=18  Identities=28%  Similarity=0.431  Sum_probs=16.1

Q ss_pred             eeecccCCChhhhhHHhh
Q psy9643          99 TIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        99 ~igHVD~GKSTl~~~l~~  116 (412)
                      ++|+.++|||||+.++.+
T Consensus         1 iiG~~~~GKStl~~~l~~   18 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLG   18 (157)
T ss_pred             CCCcCCCcHHHHHHHHHh
Confidence            589999999999999944

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=85.24  E-value=0.51  Score=40.42  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=17.9

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |.++|..++||||++.+|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999953

...

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=85.23  E-value=0.51  Score=39.26  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      |++.|-.++||||++..|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999654

...

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=85.19  E-value=0.48  Score=44.03  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            36899999999999999998765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG1489|consensus

Probab=84.89  E-value=0.64  Score=46.26  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=22.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      =|...+||.+|-..+|||||..+|+.
T Consensus       193 LKsiadvGLVG~PNAGKSTLL~als~  218 (366)
T KOG1489|consen  193 LKSIADVGLVGFPNAGKSTLLNALSR  218 (366)
T ss_pred             eeeecccceecCCCCcHHHHHHHhhc
Confidence            45567899999999999999999964

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=84.85  E-value=0.51  Score=43.86  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        25 ~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          25 VTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            45899999999999999997754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=84.84  E-value=0.68  Score=41.58  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++...|++.|..++||||++..|...
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            34568899999999999999999443

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=84.77  E-value=0.55  Score=43.47  Aligned_cols=23  Identities=30%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=84.72  E-value=0.52  Score=43.57  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999997754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd00879 Sar1 Sar1 subfamily

Probab=84.51  E-value=0.63  Score=41.88  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=20.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +....|+++|..++|||||+.+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~   40 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLK   40 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            336778999999999999999994

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=84.48  E-value=0.54  Score=42.23  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .|+++|.-++|||||+.+|...
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~   24 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPA   24 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd04113 Rab4 Rab4 subfamily

Probab=84.43  E-value=0.57  Score=40.78  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=19.3

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|..++|||||+.+|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~   21 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFV   21 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999994

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0090|consensus

Probab=84.39  E-value=1.1  Score=42.20  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=17.6

Q ss_pred             eeEEeeecccCCChhhhhHH
Q psy9643          95 CNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l  114 (412)
                      -.|-++|=-|+|||+|--+|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL   58 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQL   58 (238)
T ss_pred             CcEEEEecCCCCceeeeeeh
Confidence            45678999999999999888

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=84.38  E-value=0.55  Score=43.82  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999997754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07667 uridine kinase; Provisional

Probab=84.34  E-value=0.67  Score=42.65  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++-|||.|..++||||++..|...
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~   40 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKEN   40 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            478899999999999999999543

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=84.32  E-value=0.63  Score=41.19  Aligned_cols=22  Identities=36%  Similarity=0.357  Sum_probs=20.1

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|+.++|||||+.+++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~   23 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFC   23 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999994

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=84.31  E-value=0.55  Score=43.30  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            358999999999999999987543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PLN02348 phosphoribulokinase

Probab=84.30  E-value=0.69  Score=47.53  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.2

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +..+-|||.|..++||||++.+|...|.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4468899999999999999999977664

>PRK07261 topology modulation protein; Provisional

Probab=84.28  E-value=0.64  Score=41.97  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.7

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+|+|-.++|||||+.+|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999954

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=84.22  E-value=0.72  Score=42.04  Aligned_cols=29  Identities=34%  Similarity=0.441  Sum_probs=24.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGM  122 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~  122 (412)
                      ..||+.||--++||||+..+|++.|.-..
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F   30 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPF   30 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence            35899999999999999999987776433

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=84.20  E-value=0.53  Score=46.15  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||...|.+.+
T Consensus        35 v~i~G~nGsGKSTLl~~l~Gl~   56 (288)
T PRK13643         35 TALIGHTGSGKSTLLQHLNGLL   56 (288)
T ss_pred             EEEECCCCChHHHHHHHHhcCC
Confidence            6899999999999999998754

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=84.19  E-value=0.56  Score=44.65  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        30 ~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        30 TALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             EEEECCCCCCHHHHHHHHhccC
Confidence            5899999999999999997754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=84.15  E-value=0.6  Score=43.92  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999987543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05439 pantothenate kinase; Provisional

Probab=84.14  E-value=0.73  Score=45.96  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..+....|||.|-+++||||++..|...
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~  109 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQAL  109 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3455688999999999999999999543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=84.13  E-value=0.59  Score=43.88  Aligned_cols=23  Identities=30%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        28 VTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=84.12  E-value=0.56  Score=44.18  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        14 ~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        14 VLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999997754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=84.10  E-value=0.57  Score=43.99  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=84.07  E-value=0.58  Score=44.89  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        41 ~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         41 TAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEEECCCCCCHHHHHHHHHhhc
Confidence            6899999999999999997754

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=84.03  E-value=0.74  Score=47.09  Aligned_cols=112  Identities=16%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      ++..+||+++|-.++||||++.+|-|.   |..+..                  ....|++-.         -.++..++
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl---~~~d~~------------------aA~tGv~et---------T~~~~~Y~   81 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGL---GHEDEG------------------AAPTGVVET---------TMEPTPYP   81 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT-----TTSTT------------------S--SSSHSC---------CTS-EEEE
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCC---CCCCcC------------------cCCCCCCcC---------CCCCeeCC
Confidence            345799999999999999999999432   111110                  122333210         01333444


Q ss_pred             cCCCCCccccCCCCCce-eE---------EEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         171 YDTIPYFPVSTVPGHKG-QL---------VFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       171 ~~~~~~~~i~d~pGH~~-~l---------~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                      +-..|++.+-|.||... ++         -...+ +.-+++..+|++.      ..+. -...++.+|-+-.++-++++.
T Consensus        82 ~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~y-D~fiii~s~rf~~------ndv~-La~~i~~~gK~fyfVRTKvD~  153 (376)
T PF05049_consen   82 HPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRY-DFFIIISSERFTE------NDVQ-LAKEIQRMGKKFYFVRTKVDS  153 (376)
T ss_dssp             -SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG--SEEEEEESSS--H------HHHH-HHHHHHHTT-EEEEEE--HHH
T ss_pred             CCCCCCCeEEeCCCCCCCCCCHHHHHHHcccccc-CEEEEEeCCCCch------hhHH-HHHHHHHcCCcEEEEEecccc
Confidence            44667777888898732 11         11111 2334455566653      1110 125667788777777788874

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=83.92  E-value=0.63  Score=43.04  Aligned_cols=23  Identities=30%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=83.89  E-value=0.57  Score=45.59  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||+..|++.+
T Consensus        36 ~~I~G~nGsGKSTLl~~l~Gl~   57 (277)
T PRK13642         36 VSIIGQNGSGKSTTARLIDGLF   57 (277)
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999997754

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=83.86  E-value=0.63  Score=43.30  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -++++|+.++|||||.++|...+
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~~~l   46 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALKYAL   46 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            44799999999999999995443

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PLN02796 D-glycerate 3-kinase

Probab=83.86  E-value=0.77  Score=46.43  Aligned_cols=28  Identities=32%  Similarity=0.247  Sum_probs=23.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++.+-||++|..++|||||+..|.+.+.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3457789999999999999999976553

>PRK00131 aroK shikimate kinase; Reviewed

Probab=83.85  E-value=0.71  Score=40.74  Aligned_cols=25  Identities=36%  Similarity=0.446  Sum_probs=21.3

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..+|.++|..++||||++..|...+
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            3488999999999999999996544

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=83.84  E-value=0.61  Score=41.76  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        30 ~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          30 LLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997643

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>KOG1424|consensus

Probab=83.70  E-value=2.7  Score=44.37  Aligned_cols=101  Identities=21%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             HHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCC-CCC-----ccCcc-------c-cchhhccccc---ccccccc
Q psy9643          15 ELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEP-EIG-----IIPLY-------P-NDKFEINKLN---VFVPLIN   77 (412)
Q Consensus        15 ~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~-~~~-----~~~~~-------~-~~~~~~~~~~---~~~~~~~   77 (412)
                      +|+.-|.|.--.+| |.-+++|+|-=||+.|-+..++ .++     .+.++       + +....|.+..   .+.+.+-
T Consensus       216 DLl~~~qr~aWa~Y-F~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~  294 (562)
T KOG1424|consen  216 DLLPPEQRVAWAEY-FRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVE  294 (562)
T ss_pred             hcCCHHHHHHHHHH-HHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHH
Confidence            45556666666666 7778899999999996432221 111     11111       1 0010111111   0000000


Q ss_pred             ccch---hhhhccccCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          78 SRRG---YAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        78 ~~~~---~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+.   |-.=+.-.+.|++++||++|..+-|||+++.+|.+
T Consensus       295 ~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG  336 (562)
T KOG1424|consen  295 QLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVG  336 (562)
T ss_pred             hhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhc
Confidence            0000   00002345678889999999999999999999944

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=83.70  E-value=0.67  Score=44.70  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=22.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ....+||+++|..++|||||+.+|++
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg   53 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFG   53 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhC
Confidence            44568999999999999999999943

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=83.68  E-value=0.77  Score=43.41  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=20.9

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +.+| +++|..++|||||+.+|+..+.
T Consensus        23 ~~~~-~i~GpNGsGKStll~ai~~~l~   48 (243)
T cd03272          23 PKHN-VVVGRNGSGKSNFFAAIRFVLS   48 (243)
T ss_pred             CCcE-EEECCCCCCHHHHHHHHHHHHc
Confidence            3455 6999999999999999965444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=83.64  E-value=0.58  Score=44.17  Aligned_cols=22  Identities=32%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||...|++.+
T Consensus        34 ~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         34 VTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6899999999999999997754

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=83.63  E-value=0.61  Score=42.27  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=83.59  E-value=0.62  Score=44.19  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||...|++.+
T Consensus        30 ~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          30 LVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=83.51  E-value=0.66  Score=39.97  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=19.1

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+|+++|..++|||||+.++.
T Consensus         1 ~ki~i~G~~~~GKStli~~l~   21 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYV   21 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999994

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=83.50  E-value=0.63  Score=42.97  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        37 ~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          37 IGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            5899999999999999998754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=83.48  E-value=0.62  Score=46.72  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..||.|.|..++||||++.+|+.
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~  166 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIA  166 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999999943

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=83.47  E-value=0.61  Score=46.01  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        22 ~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        22 FGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999988653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=83.43  E-value=0.68  Score=42.90  Aligned_cols=23  Identities=35%  Similarity=0.281  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         30 ALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997753

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=83.38  E-value=0.68  Score=43.52  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .-|++-|-+++|||||+.+|..-+
T Consensus         5 ~~IvI~G~IG~GKSTLa~~La~~l   28 (216)
T COG1428           5 MVIVIEGMIGAGKSTLAQALAEHL   28 (216)
T ss_pred             cEEEEecccccCHHHHHHHHHHHh
Confidence            347889999999999999995433

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=83.35  E-value=0.64  Score=43.19  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        32 ~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        32 VFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998754

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=83.30  E-value=0.64  Score=43.84  Aligned_cols=23  Identities=39%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        13 ~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        13 FISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=83.28  E-value=0.63  Score=43.30  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=83.28  E-value=0.65  Score=43.24  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=83.26  E-value=0.65  Score=43.88  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        29 FVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            35899999999999999997753

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=83.17  E-value=0.66  Score=42.92  Aligned_cols=22  Identities=27%  Similarity=0.181  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          29 VVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999997754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14532 adenylate kinase; Provisional

Probab=83.10  E-value=0.78  Score=41.63  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.2

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      +||.++|-.++||||++.+|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999643

>cd04151 Arl1 Arl1 subfamily

Probab=83.08  E-value=0.67  Score=40.37  Aligned_cols=19  Identities=32%  Similarity=0.380  Sum_probs=17.7

Q ss_pred             eEEeeecccCCChhhhhHH
Q psy9643          96 NIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l  114 (412)
                      .|+++|+.++|||||+.+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l   19 (158)
T cd04151           1 RILILGLDNAGKTTILYRL   19 (158)
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            3789999999999999999

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01860 Rab5_related Rab5-related subfamily

Probab=83.05  E-value=0.76  Score=39.93  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=19.3

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.|+++|+.++||||++.+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~   22 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFV   22 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999994

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=82.98  E-value=0.71  Score=43.72  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         30 TLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997754

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=82.94  E-value=0.66  Score=45.97  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=21.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||+..|++.+.
T Consensus        35 i~gllGpNGaGKSTLl~~l~Gl~~   58 (306)
T PRK13537         35 CFGLLGPNGAGKTTTLRMLLGLTH   58 (306)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            469999999999999999988654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.92  E-value=0.66  Score=45.30  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||...|++.+
T Consensus        36 ~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         36 TALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             EEEECCCCCcHHHHHHHHhccc
Confidence            6899999999999999998754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=82.85  E-value=0.68  Score=43.66  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        30 ~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          30 VALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEECCCCCCHHHHHHHHhCCc
Confidence            6899999999999999998754

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00089 era GTPase Era; Reviewed

Probab=82.84  E-value=0.7  Score=45.12  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|+++|..++|||||+.+|++
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g   27 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVG   27 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhC
Confidence            45789999999999999999943

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.82  E-value=0.68  Score=45.07  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        32 ~~~i~G~NGsGKSTLl~~l~Gl~   54 (277)
T PRK13652         32 RIAVIGPNGAGKSTLFRHFNGIL   54 (277)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            35899999999999999998754

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=82.82  E-value=0.69  Score=42.69  Aligned_cols=24  Identities=21%  Similarity=0.120  Sum_probs=20.5

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         29 LVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            358999999999999999977543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=82.77  E-value=0.87  Score=41.88  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=17.2

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      -+|.++|=-|+|||+|--+|.
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~   24 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLV   24 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHh
Confidence            467899999999999999993

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.74  E-value=0.7  Score=44.01  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        33 ~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         33 TALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EEEECCCCCCHHHHHHHHhhcc
Confidence            6899999999999999998754

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=82.71  E-value=0.82  Score=41.23  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -++|+|--|+|||||+.+|..
T Consensus         4 Il~ivG~k~SGKTTLie~lv~   24 (161)
T COG1763           4 ILGIVGYKNSGKTTLIEKLVR   24 (161)
T ss_pred             EEEEEecCCCChhhHHHHHHH
Confidence            368999999999999999943

>cd04157 Arl6 Arl6 subfamily

Probab=82.70  E-value=0.7  Score=40.03  Aligned_cols=20  Identities=35%  Similarity=0.496  Sum_probs=18.5

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      ||+++|..++|||||+.+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~   20 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLK   20 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHc
Confidence            68999999999999999994

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>COG1160 Predicted GTPases [General function prediction only]

Probab=82.69  E-value=1.6  Score=45.48  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -|+++|-..-|||||-.+|++
T Consensus         5 ~VAIVGRPNVGKSTLFNRL~g   25 (444)
T COG1160           5 VVAIVGRPNVGKSTLFNRLTG   25 (444)
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999943

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=82.66  E-value=0.69  Score=45.64  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|+.++|||||++.|++.+.
T Consensus        34 ~gllG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          34 FGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             EEEECCCCCCHHHHHHHHhCCcC
Confidence            58999999999999999977554

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=82.66  E-value=0.72  Score=42.53  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          28 ALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=82.65  E-value=0.69  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||++.|++.+.
T Consensus        69 i~gLlGpNGaGKSTLl~~L~Gl~~   92 (340)
T PRK13536         69 CFGLLGPNGAGKSTIARMILGMTS   92 (340)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            368999999999999999987553

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=82.64  E-value=0.71  Score=43.70  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .+|+|-.++|||||.++|++.+.
T Consensus        30 ~ailGPNGAGKSTlLk~LsGel~   52 (259)
T COG4559          30 LAILGPNGAGKSTLLKALSGELS   52 (259)
T ss_pred             EEEECCCCccHHHHHHHhhCccC
Confidence            48999999999999999998876

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=82.63  E-value=0.68  Score=42.92  Aligned_cols=22  Identities=36%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        28 ~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          28 LAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            5899999999999999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=82.63  E-value=0.7  Score=43.72  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         31 IVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.58  E-value=0.7  Score=44.34  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||...|++.+
T Consensus        41 ~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         41 TALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999997643

>cd04135 Tc10 TC10 subfamily

Probab=82.58  E-value=0.8  Score=40.38  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=18.8

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|..++|||||+.++.
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~   21 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999998883

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK10908 cell division protein FtsE; Provisional

Probab=82.44  E-value=0.73  Score=43.03  Aligned_cols=23  Identities=30%  Similarity=0.159  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         30 MAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.44  E-value=0.72  Score=44.61  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        37 ~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         37 WTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            45899999999999999998754

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=82.41  E-value=0.73  Score=43.30  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          30 TVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            368999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13946 shikimate kinase; Provisional

Probab=82.41  E-value=0.86  Score=41.50  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=21.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +.+|+++|..++||||+...|...|
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3589999999999999999997654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=82.37  E-value=0.78  Score=42.45  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||..+|.+.+
T Consensus        25 ~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          25 TAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3799999999999999996544

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=82.36  E-value=1.5  Score=42.79  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.++++++|..+.||||+..+|+
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~  139 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLA  139 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHh
Confidence            36889999999999999999994

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01863 Rab18 Rab18 subfamily

Probab=82.35  E-value=0.8  Score=39.74  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|..++||||++.+|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~   21 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFT   21 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999994

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.33  E-value=0.73  Score=44.01  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        36 ~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         36 TALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            5899999999999999997754

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=82.26  E-value=0.75  Score=42.83  Aligned_cols=22  Identities=32%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||.+.|++.+
T Consensus        40 ~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         40 LLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6899999999999999997753

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=82.24  E-value=0.72  Score=45.73  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        35 ~v~iiG~nGsGKSTLl~~L~Gl~~   58 (305)
T PRK13651         35 FIAIIGQTGSGKTTFIEHLNALLL   58 (305)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            368999999999999999988653

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=82.21  E-value=1.8  Score=45.45  Aligned_cols=91  Identities=20%  Similarity=0.226  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCC-----CCCCCccCccc-cchhhccccccccccccccchhh
Q psy9643          10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGK-----EPEIGIIPLYP-NDKFEINKLNVFVPLINSRRGYA   83 (412)
Q Consensus        10 d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   83 (412)
                      |++-++.++.|++++|.+.||..+++|+|.-||+...+=.     -+|+.-.+++. =+.+..++++     .++++.|+
T Consensus       163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~~~~~-----~~~p~r~~  237 (446)
T PTZ00141        163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEPPKRP-----VDKPLRLP  237 (446)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCCCCcC-----CCCCeEEE
Confidence            5688899999999999999998888999999998764211     13332223332 1222233332     34556677


Q ss_pred             hhccccCCCCeeeEEeeecccCCC
Q psy9643          84 EKQVYSRDKPHCNIGTIGHVDHGK  107 (412)
Q Consensus        84 ~~~~~~~~k~~~ni~~igHVD~GK  107 (412)
                      +.+++.-.-  .-.++.|.|-+|.
T Consensus       238 I~~v~~v~g--~Gtvv~G~V~~G~  259 (446)
T PTZ00141        238 LQDVYKIGG--IGTVPVGRVETGI  259 (446)
T ss_pred             EEEEEecCC--ceEEEEEEEEcce
Confidence            777764321  2335567777664

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=82.20  E-value=0.96  Score=47.01  Aligned_cols=28  Identities=36%  Similarity=0.310  Sum_probs=23.4

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +++.+-|||+|.-++|||||+..|.+.+
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL  236 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLF  236 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456788999999999999999996544

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=82.19  E-value=0.75  Score=43.73  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        32 ~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         32 VAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=82.18  E-value=0.74  Score=45.45  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        32 ~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        32 CFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=82.00  E-value=0.89  Score=39.13  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..|+++|..++|||||+.+++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~   22 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLI   22 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999994

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04149 Arf6 Arf6 subfamily

Probab=81.98  E-value=0.91  Score=40.42  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=20.2

Q ss_pred             CeeeEEeeecccCCChhhhhHH
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      +.++|+++|+.++|||||+.++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l   29 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKL   29 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHH
Confidence            3589999999999999999999

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=81.96  E-value=0.77  Score=43.42  Aligned_cols=23  Identities=35%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         29 VVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=81.96  E-value=0.79  Score=42.16  Aligned_cols=23  Identities=35%  Similarity=0.255  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        29 ~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         29 LLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999997754

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=81.95  E-value=0.78  Score=39.96  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.7

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -|+++|..++|||||+.++.+
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999943

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=81.93  E-value=0.94  Score=43.96  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=23.2

Q ss_pred             ccccCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++++..+...-|||-|-.++|||||+++|.
T Consensus        21 ~l~~~~g~a~~iGiTG~PGaGKSTli~~l~   50 (266)
T PF03308_consen   21 RLYPHTGRAHVIGITGPPGAGKSTLIDALI   50 (266)
T ss_dssp             HHGGGTT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred             HHHhhcCCceEEEeeCCCCCcHHHHHHHHH
Confidence            445555556789999999999999999994

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=81.90  E-value=0.79  Score=42.76  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        33 ~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          33 VALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999997753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=81.90  E-value=0.94  Score=42.75  Aligned_cols=29  Identities=24%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME  120 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~  120 (412)
                      .+..-||++|-.++|||||+..|.+.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            44677899999999999999999765543

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=81.89  E-value=0.77  Score=44.63  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|+.++|||||...|++.+.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (274)
T PRK13644         30 YIGIIGKNGSGKSTLALHLNGLLR   53 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            358999999999999999987543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=81.89  E-value=0.85  Score=42.75  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||.+.|++.+.
T Consensus        35 ~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          35 VMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccC
Confidence            368999999999999999987653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PLN03108 Rab family protein; Provisional

Probab=81.89  E-value=0.95  Score=42.00  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|..++|||||+.+++
T Consensus         6 ~~kivivG~~gvGKStLi~~l~   27 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFT   27 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5899999999999999999994

>PRK07429 phosphoribulokinase; Provisional

Probab=81.86  E-value=1.1  Score=45.16  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +..+-|++.|-.++||||++..|.+.+.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence            3467899999999999999999976654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=81.77  E-value=0.99  Score=37.06  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             eeEEeeecccCCChhhhhHHhhhcc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++.++|..++||||++..|...+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4688999999999999999955443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=81.76  E-value=0.82  Score=42.79  Aligned_cols=22  Identities=27%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          29 TALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEECCCCCCHHHHHHHHHhhc
Confidence            5899999999999999998865

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=81.73  E-value=2  Score=42.06  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=27.5

Q ss_pred             chhhhhccc---cCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          80 RGYAEKQVY---SRDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        80 ~~~~~~~~~---~~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+..++..+   ..++...-||+.|-|+.||||++..|..
T Consensus        65 ~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~  104 (283)
T COG1072          65 RLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQA  104 (283)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHH
Confidence            334444444   4566678899999999999999998844

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=81.72  E-value=0.77  Score=44.97  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        36 ~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         36 VGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            58999999999999999987653

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=81.69  E-value=0.78  Score=44.46  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         35 IAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=81.69  E-value=0.79  Score=45.82  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        55 ~~I~G~nGsGKSTLl~~L~Gl~~   77 (320)
T PRK13631         55 YFIIGNSGSGKSTLVTHFNGLIK   77 (320)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999987543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=81.67  E-value=0.85  Score=43.42  Aligned_cols=23  Identities=35%  Similarity=0.328  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|+.++|||||...|++.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         31 ITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            36899999999999999997643

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=81.65  E-value=0.8  Score=43.90  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        28 ~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          28 IGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999997754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=81.64  E-value=0.81  Score=43.89  Aligned_cols=23  Identities=22%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        32 ~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         32 VTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            36899999999999999997754

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=81.63  E-value=0.89  Score=41.38  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=19.0

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++|..++|||||...|.+
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999954

>PRK15494 era GTPase Era; Provisional

Probab=81.62  E-value=0.97  Score=45.53  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...+|+++|+.++|||||+.+|+
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~   73 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRII   73 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHh
Confidence            37899999999999999999994

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=81.62  E-value=0.85  Score=40.67  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=17.9

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |+++|..++||||++.+|..
T Consensus         2 i~i~G~~gsGKTtl~~~l~~   21 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVK   21 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999954

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=81.58  E-value=0.97  Score=40.89  Aligned_cols=22  Identities=36%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|..++||||++.+++
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~   38 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLK   38 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHh
Confidence            5889999999999999999994

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=81.54  E-value=0.82  Score=42.27  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        26 ~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          26 ITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=81.52  E-value=0.88  Score=42.25  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        26 IVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999997754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=81.51  E-value=0.82  Score=43.49  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         30 ITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            46899999999999999997754

>PLN03118 Rab family protein; Provisional

Probab=81.49  E-value=0.99  Score=41.74  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+.|+++|+.++|||||+.+++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~   35 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFI   35 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHH
Confidence            36789999999999999999993

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=81.49  E-value=0.9  Score=41.71  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        37 ~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          37 LTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999997754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=81.45  E-value=0.88  Score=42.25  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            36899999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=81.43  E-value=0.84  Score=42.17  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          29 FGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=81.37  E-value=0.85  Score=42.68  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        42 ~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          42 VTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCcC
Confidence            358999999999999999987653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=81.36  E-value=0.81  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...||.+.|-.++||||++.+|++
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~  184 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLIS  184 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHc
Confidence            468999999999999999999943

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=81.36  E-value=0.84  Score=43.01  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        38 ~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         38 MAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999998754

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=81.36  E-value=0.84  Score=43.04  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          30 VVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            36899999999999999998754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=81.32  E-value=0.84  Score=42.72  Aligned_cols=23  Identities=26%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        32 ~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          32 VAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             EEEECCCCCCHHHHHHHHhcCcC
Confidence            68999999999999999987653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=81.32  E-value=0.85  Score=43.52  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        33 ~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         33 TAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            6899999999999999998764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=81.29  E-value=0.95  Score=40.66  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++++|..++|||||...|++.
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4689999999999999999764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd04122 Rab14 Rab14 subfamily

Probab=81.18  E-value=0.95  Score=39.75  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|+.++|||||+.++.
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~   23 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFT   23 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999994

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=81.09  E-value=0.86  Score=43.76  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        32 ~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         32 ILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=81.09  E-value=0.9  Score=43.98  Aligned_cols=23  Identities=39%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|=.++|||||++.++|.+.
T Consensus        33 ~~iiGPNGaGKSTLlK~iLGll~   55 (254)
T COG1121          33 TALIGPNGAGKSTLLKAILGLLK   55 (254)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            47899999999999999988654

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=81.09  E-value=0.84  Score=45.95  Aligned_cols=23  Identities=39%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...||.+.|-.++||||++.+|+
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~  181 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAAL  181 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999999994

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=80.98  E-value=0.87  Score=43.90  Aligned_cols=23  Identities=39%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.||.|+|-.++||||++.+|+
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all  148 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALL  148 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCccccchHHHHHh
Confidence            47899999999999999999993

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=80.96  E-value=0.87  Score=43.06  Aligned_cols=23  Identities=35%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        30 LRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=80.85  E-value=0.93  Score=41.50  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++++|+.++|||||...|++.
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          35 LTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999663

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=80.79  E-value=0.97  Score=43.69  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        48 ~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         48 ITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            46899999999999999997754

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=80.79  E-value=1.1  Score=40.09  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...|+++|+.++|||||+.+++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~   36 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFL   36 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHc
Confidence            5689999999999999999993

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=80.78  E-value=1.9  Score=42.30  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.+.++++|..+.||||+..+|+
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~  142 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLA  142 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHh
Confidence            346789999999999999999994

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=80.76  E-value=0.85  Score=43.56  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        24 i~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         24 ILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            36899999999999999997754

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=80.73  E-value=0.93  Score=44.32  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ||++|-.++||||++.+|.+.+.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhC
Confidence            68999999999999999977654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=80.72  E-value=1.2  Score=38.94  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=22.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++...|.+.|-.++||||+++.+.+.+
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            345568899999999999999996654

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=80.71  E-value=0.99  Score=39.13  Aligned_cols=21  Identities=14%  Similarity=0.340  Sum_probs=19.0

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.|+++|..++|||||..+++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~   21 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFV   21 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999994

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=80.68  E-value=0.93  Score=41.64  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        27 ~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        27 YAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            68999999999999999987543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=80.66  E-value=0.88  Score=44.64  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .++++|..++|||||...|++.+.
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         35 YVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            358999999999999999987543

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=80.65  E-value=0.94  Score=41.49  Aligned_cols=23  Identities=22%  Similarity=0.122  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999997754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=80.64  E-value=0.99  Score=42.91  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         31 VTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            45899999999999999997643

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=80.63  E-value=0.95  Score=39.82  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        27 ~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999996643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=80.60  E-value=0.91  Score=42.37  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          33 TLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=80.60  E-value=0.91  Score=43.96  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        53 ~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          53 FVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=80.56  E-value=0.94  Score=43.74  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        50 ~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         50 TALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=80.56  E-value=0.94  Score=42.43  Aligned_cols=23  Identities=35%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        38 ~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         38 TIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46899999999999999998764

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=80.55  E-value=0.92  Score=43.78  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        40 ~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         40 FVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999997754

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=80.52  E-value=0.97  Score=40.51  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        30 ~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            35899999999999999997753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=80.49  E-value=0.92  Score=44.21  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        36 ~~i~G~nGsGKSTLl~~l~Gl~   57 (279)
T PRK13650         36 LSIIGHNGSGKSTTVRLIDGLL   57 (279)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999998754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=80.42  E-value=0.94  Score=43.18  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.2

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        34 ~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         34 TALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999999764

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=80.39  E-value=0.92  Score=44.43  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .|+++|.-++|||||+.+|...|
T Consensus         3 ~i~i~G~~gSGKTTLi~~Li~~L   25 (274)
T PRK14493          3 VLSIVGYKATGKTTLVERLVDRL   25 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999995443

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=80.39  E-value=0.87  Score=40.22  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=17.6

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |+++|-.++||||++..|.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~   20 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAH   20 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999954

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=80.36  E-value=0.93  Score=43.62  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -++++|+.++|||||...|++.+
T Consensus        38 ~~~i~G~nGsGKSTLl~~iaG~~   60 (257)
T PRK14246         38 IFGIMGPSGSGKSTLLKVLNRLI   60 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999997743

>cd04116 Rab9 Rab9 subfamily

Probab=80.34  E-value=1.2  Score=39.15  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|..++|||||+.+++
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~   26 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYV   26 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999999993

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=80.30  E-value=0.95  Score=42.96  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         31 IYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999997754

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=80.30  E-value=0.98  Score=43.08  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        35 ~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         35 TALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999764

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=80.27  E-value=2.1  Score=38.80  Aligned_cols=40  Identities=35%  Similarity=0.459  Sum_probs=32.0

Q ss_pred             cCCCHHHHHHHHHHHHhhHhhcCCCC-CCCCeeechhhhhh
Q psy9643           7 DAADAEMAELVEMEMRELLTEMGWKG-DEVPFVKGSALCAL   46 (412)
Q Consensus         7 d~~d~e~~~lve~e~~~~l~~~~~~~-~~~p~~~gsal~al   46 (412)
                      |....++.+.++.-...++..+++++ ...||+.+||+...
T Consensus       133 D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~  173 (188)
T PF00009_consen  133 DLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGD  173 (188)
T ss_dssp             TSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTB
T ss_pred             cchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCC
Confidence            77767777777655558899999998 58999999997763

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=80.27  E-value=2.4  Score=43.87  Aligned_cols=100  Identities=24%  Similarity=0.280  Sum_probs=60.0

Q ss_pred             cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCC-----CCCCccCccc-cchhhccccccccccccc
Q psy9643           7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE-----PEIGIIPLYP-NDKFEINKLNVFVPLINS   78 (412)
Q Consensus         7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (412)
                      |+.  +++.++.+..|++++|.++||+.++.|++.-||+..-+=++     +|+.-..++. -+.+..++++     .++
T Consensus       150 Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~-----~~~  224 (425)
T PRK12317        150 DAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKP-----TDK  224 (425)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccc-----cCC
Confidence            874  45667777889999999999987789999999986532111     2332222221 1122222222     355


Q ss_pred             cchhhhhccccCCCCeeeEEeeecccCCChhhhhH
Q psy9643          79 RRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAA  113 (412)
Q Consensus        79 ~~~~~~~~~~~~~k~~~ni~~igHVD~GKSTl~~~  113 (412)
                      ++.|++.+++.-.  .+-.++.|.|-+|+=..-..
T Consensus       225 p~r~~i~~~~~~~--g~G~vv~G~v~~G~v~~Gd~  257 (425)
T PRK12317        225 PLRIPIQDVYSIS--GVGTVPVGRVETGVLKVGDK  257 (425)
T ss_pred             CcEEEEEEEEeeC--CCeEEEEEEEeeccEecCCE
Confidence            6667777776433  23446778888886444333

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=80.26  E-value=1  Score=41.88  Aligned_cols=23  Identities=39%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|-.++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=80.25  E-value=0.94  Score=44.32  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        40 ~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         40 TCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999997754

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=80.15  E-value=0.93  Score=43.87  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        30 ~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         30 TGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6899999999999999997754

>cd01856 YlqF YlqF

Probab=80.13  E-value=2.3  Score=38.06  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.1

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+++++|....|||||..+|.
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~  136 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLR  136 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=80.13  E-value=1  Score=42.51  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||...|++.+
T Consensus        31 ~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          31 TVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             EEEEEeCCCCCHHHHHHHHhccC
Confidence            35899999999999999997754

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=80.12  E-value=0.99  Score=41.71  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++++|..++|||||...|++.
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~   56 (202)
T cd03233          35 MVLVLGRPGSGCSTLLKALANR   56 (202)
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            4689999999999999999764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=80.11  E-value=1.1  Score=40.32  Aligned_cols=22  Identities=36%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++++|..++|||||.+.|++.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=80.11  E-value=0.95  Score=43.98  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        36 ~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         36 TAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999997754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=80.03  E-value=0.99  Score=39.45  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++++|..++|||||...|++.
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4589999999999999999664

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00436 era GTP-binding protein Era

Probab=80.02  E-value=0.95  Score=43.85  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=18.3

Q ss_pred             EEeeecccCCChhhhhHHhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~  116 (412)
                      |+++|+.++|||||+.+|++
T Consensus         3 V~liG~pnvGKSTLln~L~~   22 (270)
T TIGR00436         3 VAILGRPNVGKSTLLNQLHG   22 (270)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999953

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
2p4s_A	373	Structure Of Purine Nucleoside Phosphorylase From A		1e-102
1lv8_A	289	Crystal Structure Of Calf Spleen Purine Nucleoside		3e-89
1b8n_A	284	Purine Nucleoside Phosphorylase Length = 284		4e-89
1v48_A	289	Calf Spleen Purine Nucleoside Phosphorylase (Pnp) B		4e-89
1vfn_A	281	Purine Nucleoside Phosphorylase Length = 281		7e-89
2qpl_A	282	Crystal Structure Of Calf Spleen Purine Nucleoside		7e-89
1a9q_A	282	Bovine Purine Nucleoside Phosphorylase Complexed Wi		2e-88
1pbn_A	289	Purine Nucleoside Phosphorylase Length = 289		3e-88
1a9o_A	289	Bovine Purine Nucleoside Phosphorylase Complexed Wi		3e-88
1fxu_A	289	Purine Nucleoside Phosphorylase From Calf Spleen In		3e-88
1a9t_A	284	Bovine Purine Nucleoside Phosphorylase Complexed Wi		3e-88
3phb_E	324	Crystal Structure Of Human Purine Nucleoside Phosph		8e-87
1pf7_E	289	Crystal Structure Of Human Pnp Complexed With Immuc		1e-86
1m73_E	288	Crystal Structure Of Human Pnp At 2.3a Resolution L		2e-86
3gb9_A	311	Human Purine Nucleoside Phosphorylase Double Mutant		9e-86
2a0x_A	289	Structure Of Human Purine Nucleoside Phosphorylase		9e-86
2a0y_A	289	Structure Of Human Purine Nucleoside Phosphorylase		1e-85
2a0w_A	289	Structure Of Human Purine Nucleoside Phosphorylase		1e-85
4ear_A	324	Crystal Structure Of Purine Nucleoside Phosphorylas		1e-84
4eb8_A	324	Crystal Structure Of Purine Nucleoside Phosphorylas		1e-84
3khs_A	285	Crystal Structure Of Grouper Iridovirus Purine Nucl		9e-72
1tcu_A	287	Crystal Structure Of The Purine Nucleoside Phosphor		3e-68
3odg_A	287	Crystal Structure Of Xanthosine Phosphorylase Bound		9e-53
1yqq_A	277	Escherichia Coli Purine Nucleoside Phosphorylase Ii		4e-50
3la8_A	303	The Crystal Structure Of Smu.1229 From Streptococcu		3e-49
1vmk_A	277	Crystal Structure Of Purine Nucleoside Phosphorylas		4e-48
1g2o_A	268	Crystal Structure Of Purine Nucleoside Phosphorylas		1e-32
1c3x_A	266	Purine Nucleoside Phosphorylase From Cellulomonas S		3e-24
1cb0_A	283	Structure Of Human 5'-deoxy-5'-methylthioadenosine		5e-14
1d2e_A	397	Crystal Structure Of Mitochondrial Ef-Tu In Complex		4e-13
1d2e_A	397	Crystal Structure Of Mitochondrial Ef-Tu In Complex		3e-08
1xb2_A	409	Crystal Structure Of Bos Taurus Mitochondrial Elong		2e-12
1xb2_A	409	Crystal Structure Of Bos Taurus Mitochondrial Elong		5e-11
3mmp_A	678	Structure Of The Qb Replicase, An Rna-Dependent Rna		3e-09
3agp_A	1289	Structure Of Viral Polymerase Form I Length = 1289		5e-09
1v4n_A	281	Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosph		2e-08
1ob2_A	393	E. Coli Elongation Factor Ef-Tu Complexed With The		4e-08
1efc_A	393	Intact Elongation Factor From E.Coli Length = 393		4e-08
1dg1_G	394	Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len		4e-08
3u6b_A	394	Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028		4e-08
1d8t_A	393	Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M		4e-08
1efm_A	379	Structure Of The Gdp Domain Of Ef-Tu And Location O		4e-08
2a8y_A	270	Crystal Structure Of 5'-Deoxy-5'methylthioadenosine		6e-08
2c78_A	405	Ef-Tu Complexed With A Gtp Analog And The Antibioti		3e-07
2wrn_Z	406	The Crystal Structure Of The 70s Ribosome Bound To		3e-07
4abr_Z	405	Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir		3e-07
2y0y_Z	405	The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo		3e-07
1aip_A	405	Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt		4e-07
1eft_A	405	The Crystal Structure Of Elongation Factor Ef-Tu Fr		4e-07
1ttt_A	405	Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com		4e-07
2y0u_Z	405	The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou		4e-07
1exm_A	405	Crystal Structure Of Thermus Thermophilus Elongatio		4e-07
2c77_A	405	Ef-Tu Complexed With A Gtp Analog And The Antibioti		5e-07
1efu_A	385	Elongation Factor Complex Ef-TuEF-Ts From Escherich		2e-06
2hcj_A	37	"trypsin-Modified Elongation Factor Tu In Complex W		2e-06
1mj1_A	405	Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB		2e-06
1wta_A	275	Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosin		7e-06
3ozb_A	259	Crystal Structure Of 5'-Methylthioinosine Phosphory		2e-05
4glf_A	297	Crystal Structure Of Methylthioadenosine Phosphoryl		7e-05
3pen_A	403	Structure Of Archaeal Initiation Factor Aif2gamma S		3e-04
2pmd_A	415	The Structures Of Aif2gamma Subunit From The Archae		4e-04
3sjz_A	409	The Structure Of Aif2gamma Subunit Delta 41-45 From		4e-04
2aho_A	414	Structure Of The Archaeal Initiation Factor Eif2 Al		4e-04

>pdb|2P4S|A Chain A, Structure Of Purine Nucleoside Phosphorylase From Anopheles Gambiae In Complex With Dadme-immh Length = 373

Iteration: 1
 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 169/278 (60%), Positives = 212/278 (76%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
           YTY+ +Q IA +LL+   +RPK+GIICGSGL T+A+ +TD   F Y+TIP+FPVSTV GH
Sbjct: 90  YTYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAGH 149
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+LVFG + G+P+MCMQGRFH+YEGYPL KCAMP+RVM L+G THL+ATNAAGG NP Y
Sbjct: 150 VGRLVFGYLAGVPVMCMQGRFHHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPKY 209
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
            VGDIM+IKDHINLMGFAGNNPL G N++RFGPRF  M   Y+ +L      IAR + + 
Sbjct: 210 RVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANTYDPKLNQQAKVIARQIGIE 269
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
           + ++EGVY+ +GGPNFETVAE+ ML + GVDA+GMSTVHE+ITA HCGMT  AFSLITN 
Sbjct: 270 NELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITNM 329
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           C   Y++  E  H+ ++  GK R   +   V+RIV +I
Sbjct: 330 CTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHI 367

>pdb|1LV8|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside Phosphorylase In A New Space Group With Full Trimer In The Asymmetric Unit Length = 289

Iteration: 1
 Score =  325 bits (832), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1B8N|A Chain A, Purine Nucleoside Phosphorylase Length = 284

Iteration: 1
 Score =  325 bits (832), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1V48|A Chain A, Calf Spleen Purine Nucleoside Phosphorylase (Pnp) Binary Complex With 9-(5,5-Difluoro-5-Phosphonopenthyl)guanine Length = 289

Iteration: 1
 Score =  325 bits (832), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 150/282 (53%), Positives = 194/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1VFN|A Chain A, Purine Nucleoside Phosphorylase Length = 281

Iteration: 1
 Score =  324 bits (830), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 149/278 (53%), Positives = 193/278 (69%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
           YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP STVPGH
Sbjct: 2   YTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGH 61
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGLNP++
Sbjct: 62  AGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNF 121
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
           EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + +   
Sbjct: 122 EVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQ 181
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
             ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSLITNK
Sbjct: 182 RELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 241
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
            + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 242 VIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 279

>pdb|2QPL|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside Phosphorylase Complexed To A Novel Purine Analogue Length = 282

Iteration: 1
 Score =  323 bits (829), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 149/278 (53%), Positives = 193/278 (69%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
           YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP STVPGH
Sbjct: 3   YTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGH 62
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGLNP++
Sbjct: 63  AGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNF 122
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
           EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + +   
Sbjct: 123 EVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQ 182
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
             ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSLITNK
Sbjct: 183 RELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 242
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
            + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 243 VIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 280

>pdb|1A9Q|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With Inosine Length = 282

Iteration: 1
 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + D +   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1PBN|A Chain A, Purine Nucleoside Phosphorylase Length = 289

Iteration: 1
 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + D +   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1A9O|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With Phosphate Length = 289

Iteration: 1
 Score =  322 bits (825), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + D +   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1FXU|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen In Complex With N(7)- Acycloguanosine Inhibitor And A Phosphate Ion Length = 289

Iteration: 1
 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + D +   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|1A9T|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With 9-Deazainosine And Phosphate Length = 284

Iteration: 1
 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + D +   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase In Complex With Dadme-Immg Length = 324

Iteration: 1
 Score =  317 bits (812), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 36  MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 95
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 96  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 155
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 156 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 215
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 216 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 275
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct: 276 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 317

>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H Length = 289

Iteration: 1
 Score =  317 bits (811), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 1   MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 282

>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution Length = 288

Iteration: 1
 Score =  316 bits (809), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/278 (53%), Positives = 192/278 (69%)
Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
           YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP STVPGH
Sbjct: 4   YTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRSTVPGH 63
Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGLNP +
Sbjct: 64  AGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKF 123
Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
           EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + +   
Sbjct: 124 EVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQ 183
Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
             ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSLITNK
Sbjct: 184 RELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK 243
Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
            + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct: 244 VIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 281

>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant E201q,n243d Complexed With 2-fluoroadenine Length = 311

Iteration: 1
 Score =  313 bits (803), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 193/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 23  MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST 82
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 83  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 142
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 143 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 202
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+F+TVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 203 MGEQRELQEGTYVMVAGPSFQTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 262
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           IT+K + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct: 263 ITDKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 304

>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f Mutant Length = 289

Iteration: 1
 Score =  313 bits (803), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 148/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 1   MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +AN EEV+ AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANFEEVLAAGKQAAQKLEQFVSILMASI 282

>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d Mutant Length = 289

Iteration: 1
 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 1   MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +AN EEV+ AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANDEEVLAAGKQAAQKLEQFVSILMASI 282

>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g Mutant Length = 289

Iteration: 1
 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 1   MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 60
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGL 120
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 121 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQ 180
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 240
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +AN EEV+ AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESLEKANGEEVLAAGKQAAQKLEQFVSILMASI 282

>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase (w16y, W94y, W178y, H257w) Mutant From Human Complexed With Dadme-immg And Phosphate Length = 324

Iteration: 1
 Score =  310 bits (794), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 36  MENGYTYEDYKNTAEYLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 95
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPL+K   P+RV  L+GV  L+ TNAAGGL
Sbjct: 96  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLYKVTFPVRVFHLLGVDTLVVTNAAGGL 155
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 156 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTYKQ 215
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 216 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 275
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +AN EEV+ AGK     ++  V+ +++ I
Sbjct: 276 ITNKVIMDYESLEKANXEEVLAAGKQAAQKLEQFVSILMASI 317

>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase (w16y, W94y, W178y, H257w) Mutant From Human Complexed With Dadme-immg And Phosphate Length = 324

Iteration: 1
 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/282 (52%), Positives = 192/282 (68%)
Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP ST
Sbjct: 36  MENGYTYEDYKNTAEYLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRST 95
Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG +NG   + MQGRFH YEGYPL+K   P+RV  L+GV  L+ TNAAGGL
Sbjct: 96  VPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLYKVTFPVRVFHLLGVDTLVVTNAAGGL 155
Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L   + 
Sbjct: 156 NPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTYKQ 215
Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 216 MGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSL 275
Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +AN EEV+ AGK     ++  V+ +++ I
Sbjct: 276 ITNKVIMDYESLEKANWEEVLAAGKQAAQKLEQFVSILMASI 317

>pdb|3KHS|A Chain A, Crystal Structure Of Grouper Iridovirus Purine Nucleoside Phosphorylase Length = 285

Iteration: 1
 Score =  267 bits (682), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 130/276 (47%), Positives = 172/276 (62%)
Query: 128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG 187
           Y+L +  A +L   + IRP +GI+CGSGL  I DS+       Y  IP FPV +V GH G
Sbjct: 4   YDLAKETAAWLNKQLQIRPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGHAG 63
Query: 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247
            L+FG +NG+  +CM+GRFH YEG+   +   P+RV K +GV  ++ TNAAGGLNP Y  
Sbjct: 64  SLIFGSVNGVSCVCMKGRFHLYEGHTAARATFPMRVFKALGVKIVVLTNAAGGLNPSYRP 123
Query: 248 GDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSI 307
           GD M+++DHINL G AG NPL G N+D  G RFP M   Y+K LR   +  AR+L MS  
Sbjct: 124 GDFMVVRDHINLPGLAGANPLTGPNDDTEGERFPSMTSVYDKTLRKYAISAARELGMSYA 183
Query: 308 VKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367
             EGVY  + GP+FET AE  +LR+ G DAVGMST  E I A H GM   A SLI+N   
Sbjct: 184 THEGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNVIA 243
Query: 368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ++ +  AE  HEEV++AG+     + ++V  ++  I
Sbjct: 244 SNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKI 279

>pdb|1TCU|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase From Schistosoma Mansoni In Complex With Phosphate And Acetate Length = 287

Iteration: 1
 Score =  255 bits (652), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/275 (45%), Positives = 177/275 (64%)
Query: 129 ELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQ 188
           E ++ +A  +    SI P+IGIICGSGL  +AD + D+   PY  IP FP ++V GH G 
Sbjct: 10  ENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVGHSGN 69
Query: 189 LVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVG 248
           L+FG ++G  ++ MQGRFH YEGY     A+PIRVMKL+GV  L+ +NAAGGLN   ++G
Sbjct: 70  LIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLG 129
Query: 249 DIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIV 308
           D +I+KDHI L G   NN L+G N++ FG RFP ++ AY++ LR   + +A +    ++V
Sbjct: 130 DFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLV 189
Query: 309 KEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVT 368
            +GVY + GGP +ET AE  ML   G D VGMST+ EV+ A HCG+ V A SL+TN  V 
Sbjct: 190 HQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVL 249
Query: 369 DYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           D +   + NHEEV+  G  R  +++S   +I+  +
Sbjct: 250 DVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKL 284

>pdb|3ODG|A Chain A, Crystal Structure Of Xanthosine Phosphorylase Bound With Xanthine From Yersinia Pseudotuberculosis Length = 287

Iteration: 1
 Score =  204 bits (518), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 108/244 (44%), Positives = 150/244 (61%), Gaps = 7/244 (2%)
Query: 144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ 203
            +P+I  I GSGL  + D IT+     Y  IP FPVS+V GH G+LV G + G+P+MCM+
Sbjct: 32  FKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMK 91
Query: 204 GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFA 263
           GR H+YEG  +     P+R  KL+G   L  TNAAG L P+   G ++++KDHIN M   
Sbjct: 92  GRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTM--- 148
Query: 264 GNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET 323
              PL+G N+DRFGPRF  +  AY+K LRA    IA+ L++   + EGV+    GP FET
Sbjct: 149 PGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIP--LTEGVFVSYPGPCFET 206
Query: 324 VAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQ 383
            AE+ M++I G D VGMS V EV++A HCG+ V A + ITN  + +       +HE+ ++
Sbjct: 207 PAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITN--LAEGLSDVVLSHEQTLK 264
Query: 384 AGKL 387
             K+
Sbjct: 265 FAKV 268

>pdb|1YQQ|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The Product Of The Xapa Gene Length = 277

Iteration: 1
 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 144/242 (59%), Gaps = 7/242 (2%)
Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205
           P++  I GSGL  +AD I +     Y+ +P FPVSTV GH G+LV G + G+P++CM+GR
Sbjct: 26  PRVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGR 85
Query: 206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN 265
            H+YEG  +      IR  KL+G   L  TNAAG L P+   G ++ +KDHIN M     
Sbjct: 86  GHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTM---PG 142
Query: 266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA 325
            P++G+N+DRFG RF  +  AY+ + RA    +A++      + EGV+    GPNFET A
Sbjct: 143 TPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFP--LTEGVFVSYPGPNFETAA 200
Query: 326 ELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAG 385
           E+ M++I G D VGMS V EVI+A HC + V A S ITN      D   + +H + + A 
Sbjct: 201 EIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSD--VKLSHAQTLAAA 258
Query: 386 KL 387
           +L
Sbjct: 259 EL 260

>pdb|3LA8|A Chain A, The Crystal Structure Of Smu.1229 From Streptococcus Mutans Ua159 Length = 303

Iteration: 1
 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 156/289 (53%), Gaps = 10/289 (3%)
Query: 112 AAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY 171
           A++T G   G       + I     FL      +P+ G+I GSGL  +A+ I +  +  Y
Sbjct: 22  ASMTGGQQMGRGSMSLLKKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENALVLNY 81
Query: 172 DTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH 231
             IP +  STV GH G+L++G + G  ++ +QGRFHYYEG  +     PIR+MK +G   
Sbjct: 82  ADIPNWGRSTVSGHAGKLIYGELAGRKVLALQGRFHYYEGNSMELVTFPIRIMKALGCQG 141
Query: 232 LLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQL 291
           L+ TNAAGG+   +  G +M I DHINL    G NPL+G N D FG RFP M+ AY    
Sbjct: 142 LIVTNAAGGIG--FGPGTLMAISDHINL---TGANPLMGENLDDFGFRFPDMSNAYTADY 196
Query: 292 RAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHH 351
           R     +A  + +   + EGVY  + GP++ET AE+   +  G DAVGMSTV EVI A H
Sbjct: 197 REVAHQVADKIGIK--LDEGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVH 254
Query: 352 CGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
            G+ V   S ITN         +E NHEEV+   +      K +V  I+
Sbjct: 255 SGLKVLGISAITNYAA---GFQSELNHEEVVAVTQQIKEDFKGLVKAIL 300

>pdb|1VMK|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase (Tm1596) From Thermotoga Maritima At 2.01 A Resolution Length = 277

Iteration: 1
 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 155/264 (58%), Gaps = 13/264 (4%)
Query: 137 FLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLING 196
           F+ +  ++ P I II GSG     + + D  I  Y  IP+FP  TV GH G+LVFG I+ 
Sbjct: 23  FISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISD 82
Query: 197 IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDH 256
            P+M M GRFH YEG+     A P+ + K VGV  ++ TNAAG +NP+++ G+I++++D 
Sbjct: 83  KPVMIMAGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDI 142
Query: 257 INLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVI 316
           IN M     NPL G N+++ GPRFP M+   + +        AR +     +KEGVY  +
Sbjct: 143 INFMF---RNPLRGPNDEKIGPRFPDMSSVVDPEW-------ARKIQERLSLKEGVYIGV 192
Query: 317 GGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEA 376
            GP++ET AE+ +    G D VGMSTV EVI A HCG+ V  FS +TN        H   
Sbjct: 193 LGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAAGI--THGRL 250
Query: 377 NHEEVIQAGKL-RGPMIKSMVTRI 399
           +HEEV++  K+ +G + K++ T +
Sbjct: 251 SHEEVVRTTKMAQGKIEKALTTAV 274

>pdb|1G2O|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From Mycobacterium Tuberculosis In Complex With A Transition- State Inhibitor Length = 268

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/275 (32%), Positives = 139/275 (50%), Gaps = 20/275 (7%)
Query: 129 ELIQSIAKFLLDSISI-RPKIGIICGSG-LSTIADSITDRHIFPYDTIPYFPVSTVPGHK 186
           EL +  A+ + D   I    + ++ GSG L  +A   +   + P   +P F   T  GH 
Sbjct: 10  ELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHA 69
Query: 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246
           G+L+   I    ++ + GR H YEG+ L     P+R  +  G   ++ TNAAGGL  D +
Sbjct: 70  GELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQ 129
Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
           VG  ++I DH+NL      +PL+G         F  +  AY+ +LR    ++AR  +   
Sbjct: 130 VGQPVLISDHLNLT---ARSPLVGGE-------FVDLTDAYSPRLR----ELARQSDPQ- 174
Query: 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366
            + EGVY+ + GP++ET AE+ ML+  G D VGMSTVHE I A   G  V   SL+TN  
Sbjct: 175 -LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLA 233
Query: 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
                +    +H EV+ AG      + +++  +++
Sbjct: 234 AGITGE--PLSHAEVLAAGAASATRMGALLADVIA 266

>pdb|1C3X|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In Complex With 8-Iodo-Guanine Length = 266

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 101/200 (50%), Gaps = 18/200 (9%)
Query: 200 MCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINL 259
           + +  R H YEG  +      +R     G   L+ TN  GGLN ++  G  +++ DHINL
Sbjct: 82  LVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHINL 141
Query: 260 MGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGP 319
                 +PL        GP F  +   Y+ +LR    ++A  ++ +  + EGVY+   GP
Sbjct: 142 TA---RSPL-------EGPTFVDLTDVYSPRLR----ELAHRVDPT--LPEGVYAQFPGP 185
Query: 320 NFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE 379
           ++ET AE+ M  I G D VGMST  E I A HCG+ V   SL+TN            +H 
Sbjct: 186 HYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVTNLAAGISP--TPLSHA 243
Query: 380 EVIQAGKLRGPMIKSMVTRI 399
           EVI+AG+  GP I +++  I
Sbjct: 244 EVIEAGQAAGPRISALLADI 263

>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine Phosphorylase At 1.7 A Resolution Length = 283

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 41/281 (14%)
Query: 147 KIGIICGSGLS--TIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIP--IMCM 202
           KIGII G+GL    I +  T++++   DT P+   S        L+ G I  +   ++  
Sbjct: 11  KIGIIGGTGLDDPEILEGRTEKYV---DT-PFGKPSDA------LILGKIKNVDCVLLAR 60
Query: 203 QGRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGDIMIIK 254
            GR H           MP +V        +K  G TH++ T A G L  + + GDI+II 
Sbjct: 61  HGRQHTI---------MPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIID 111
Query: 255 DHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYS 314
             I+       +   G +    G    PM + +  + R   ++ A+ L +    K G   
Sbjct: 112 QFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSK-GTMV 170
Query: 315 VIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD--- 371
            I GP F + AE  M R  G D + M+TV EV+ A   G+   + ++      TDYD   
Sbjct: 171 TIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAM-----ATDYDCWK 225
Query: 372 DHAEA-NHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNST 411
           +H EA + + V++  K      KS++   +  IG  + + T
Sbjct: 226 EHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSET 266

>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 45/57 (78%), Gaps = 4/57 (7%)
Query: 3   VYYIDAADA----EMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
           V Y++ ADA    EM ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G+
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGL 179

>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSY-TYELIQSIAKFLLDSISI 144
           KPH N+GTIGHVDHGKTTLTAAITK L EG    +  YE I +  +     I+I
Sbjct: 1   KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITI 54

>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
Query: 3   VYYIDAADA----EMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
           V Y++ ADA    E  ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G+
Sbjct: 134 VVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGL 190

>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSY-TYELIQSIAKFLLDSIS 143
           K+ Y RDKPH N+GTIGHVDHGKTTLTAAITK L EG    +  YE I +  +     I+
Sbjct: 5   KKTYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGIT 64
Query: 144 I 144
           I
Sbjct: 65  I 65

>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 78  SRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           S++ +  K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 280 SKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 317

>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 78  SRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS 125
           S++ +  K+ + R KPH N+GTIGHVDHGKTTLTAAIT  L +   G+
Sbjct: 280 SKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA 327

>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Homologue From Sulfolobus Tokodaii Length = 281

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF-GPR 279
           I  +K +GV  ++A +A G L  DY+ GD ++    I++          G     F GP 
Sbjct: 77  IWALKSLGVKWVIAVSAVGSLRLDYKPGDFVVPNQFIDMTK--------GRTYTFFDGPT 128
Query: 280 FP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGVD 336
                M   + + LR+  LD A+DL +++  K G Y  I GP F T AE  + + +   D
Sbjct: 129 VAHVSMADPFCEHLRSIILDSAKDLGITTHDK-GTYICIEGPRFSTRAESIVWKEVFKAD 187
Query: 337 AVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE--ANHEEVIQAGKLRGPMIKS 394
            +GM+ V EV  A    M  +   +     VTDYD  A+     EEV +        +K 
Sbjct: 188 IIGMTLVPEVNLACEAEMCYSVIGM-----VTDYDVFADIPVTAEEVTKVMAENTAKVKK 242
Query: 395 MVTRIVSYIGE 405
           ++  ++  + E
Sbjct: 243 LLYEVIRRLPE 253

>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2   KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32

>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2   KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32

>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 3   KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 33

>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 3   KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 33

>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2   KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32

>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 27/31 (87%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K+ + R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 2   KEKFERTKPHVNVGTIGHVDHGKTTLTAAIT 32

>pdb|2A8Y|A Chain A, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine Phosphorylase Complexed With 5'-Deoxy- 5'methylthioadenosine And Sulfate Length = 270

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 22/170 (12%)
Query: 221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF--GP 278
           I  +K +GV  +++ +A G L  DY++GD +I    I++             E  F  GP
Sbjct: 76  IWALKELGVRWVISVSAVGSLRMDYKLGDFVIPDQFIDMTKN---------REYSFFDGP 126
Query: 279 RFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGV 335
                 M   +   LR   ++ A++LN+ +  + G Y  I GP F T AE    R +   
Sbjct: 127 VVAHVSMADPFCNSLRKLAIETAKELNIKT-HESGTYICIEGPRFSTRAESRTWREVYKA 185
Query: 336 DAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE--ANHEEVIQ 383
           D +GM+ V EV  A    M     ++     VTDYD  AE     EEV +
Sbjct: 186 DIIGMTLVPEVNLACEAQMCYATIAM-----VTDYDVFAEIPVTAEEVTR 230

>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 3   KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 33

>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFVRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           K  + R KPH N+GTIGHVDHGKTTLTAA+T
Sbjct: 2   KGEFIRTKPHVNVGTIGHVDHGKTTLTAALT 32

>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/24 (91%), Positives = 23/24 (95%)
Query: 92  KPHCNIGTIGHVDHGKTTLTAAIT 115
           KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 1   KPHVNVGTIGHVDHGKTTLTAAIT 24

>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 37

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS 125
           KPH N+GTIGHVDHGKTTLTAAIT  L +   G+
Sbjct: 2   KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA 35

>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           + R K H N+GTIGHVDHGKTTLTAA+T
Sbjct: 5   FIRTKRHVNVGTIGHVDHGKTTLTAALT 32

>pdb|1WTA|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine From Aeropyrum Pernix (R32 Form) Length = 275

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 32/240 (13%)
Query: 144 IRPKIGIICGSGL---STIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIM 200
           +R  +G+I GSGL     + + +  +   PY     F           +V G + G+ + 
Sbjct: 10  VRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDF-----------IVVGDVAGVKVA 58
Query: 201 CM--QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHIN 258
            +   GR H    + +      I  +K +GV  +++ +A G L  DY  GD ++    I+
Sbjct: 59  FLPRHGRGHRIPPHAI-NYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVVPDQFID 117
Query: 259 LMGFAGNNPLLGVNEDRFGP--RFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVI 316
           +     +           GP      M   + + LR   +D  R L   ++ + G Y  I
Sbjct: 118 MTKNRRHYTFYD------GPVTVHVSMADPFCEDLRQRLIDSGRRLGY-TVHERGTYVCI 170
Query: 317 GGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAE 375
            GP F T AE  + + +   D +GM+ V E+  A    +     ++     VTDYD  A+
Sbjct: 171 EGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAM-----VTDYDVWAD 225

>pdb|3OZB|A Chain A, Crystal Structure Of 5'-Methylthioinosine Phosphorylase From Psedomonas Aeruginosa In Complex With Hypoxanthine Length = 259

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 150 IICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG-----QLVFGLINGIPIMCMQG 204
           II G+GL+ + + +T     P +T PY    + P  +G     +++F   +G P      
Sbjct: 20  IIGGTGLTQL-EGLTLSESLPIET-PYG-APSAPLQRGRYAGREVLFLARHGHPHRFPPH 76
Query: 205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264
           + +Y     LW        +K  G   ++A NA GG++     G + +    I+      
Sbjct: 77  QVNYRAN--LW-------ALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGRE 127
Query: 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV 324
           +    G  E      F   +  Y++ LR   ++  R L ++     GVY+   GP  ETV
Sbjct: 128 HTYFAGDIEHVTHIDF---SHPYDEPLRQRLIEALRALGLAH-SSHGVYACTQGPRLETV 183
Query: 325 AELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
           AE+  L   G D VGM+ + E   A    +     +L+ N
Sbjct: 184 AEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVN 223

>pdb|4GLF|A Chain A, Crystal Structure Of Methylthioadenosine Phosphorylase Sourced From An Antarctic Soil Metagenomic Library Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 148 IGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207
           I II GSGL  +  ++T++     +T PY   S        +V G +NG+ +  +     
Sbjct: 16  IAIIGGSGLYQM-QALTNKRSVKIET-PYGEPS------DDIVLGELNGVTVAFLT---R 64
Query: 208 YYEGYPLWKCAMPIRV----MKLVGVTHLLATNAAGGLNP-----DYEVGDIMIIKDHIN 258
           + +G+ L    +P R     +K +GV ++++ +A G L       D  + D MI      
Sbjct: 65  HGQGHRLTPSEVPYRANIYALKTLGVRYIVSVSAVGSLQETLKPLDMVIPDQMIDMTKQR 124
Query: 259 LMGFAGNNPLLGVN-EDRFGPRFPP-MNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVI 316
           +  F G+  +  V+  D   P     + +AY+            D+       +  Y  I
Sbjct: 125 VSTFFGDGAVAHVSMADPLCPEVADILIRAYDNA----------DIADGQCHAKATYVCI 174
Query: 317 GGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
            GP F T AE +  R    D +GM+ + E   A    +     +L+T+
Sbjct: 175 EGPQFSTRAESHWYRQMQADIIGMTNMPEAKLAREASIAYATLALVTD 222

>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           + + +P  NIG +GHVDHGKTTL  AIT
Sbjct: 2   WPKVQPEVNIGVVGHVDHGKTTLVQAIT 29

>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           + + +P  NIG +GHVDHGKTTL  AIT
Sbjct: 3   WPKVQPEVNIGVVGHVDHGKTTLVQAIT 30

>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           + + +P  NIG +GHVDHGKTTL  AIT
Sbjct: 2   WPKVQPEVNIGVVGHVDHGKTTLVQAIT 29

>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAIT 115
           + + +P  NIG +GHVDHGKTTL  AIT
Sbjct: 2   WPKVQPEVNIGVVGHVDHGKTTLVQAIT 29

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
2p4s_A	373	Purine nucleoside phosphorylase; transferase; HET:	1e-154
3fuc_A	284	Purine nucleoside phosphorylase; recombinant, glyc	1e-154
3khs_A	285	Purine nucleoside phosphorylase; alpha-beta struct	1e-153
1tcv_A	287	Purine-nucleoside phosphorylase; transferase; HET:	1e-153
3phb_E	324	Purine nucleoside phosphorylase; PNP,immucillin, t	1e-153
3odg_A	287	Xanthosine phosphorylase; structural genomics, PSI	1e-142
1vmk_A	277	Purine nucleoside phosphorylase; TM1596, structura	1e-141
3la8_A	303	SMU.1229, putative purine nucleoside phosphorylase	1e-140
1g2o_A	268	Purine nucleoside phosphorylase; trimer, transitio	1e-131
1qe5_A	266	Pentosyltransferase; enzyme, purine nucleoside pho	1e-126
1cb0_A	283	Protein (5'-deoxy-5'-methylthioadenosine phosphor;	3e-33
3ozb_A	259	Methylthioadenosine phosphorylase; 5'-methylthioin	4e-33
2a8y_A	270	5'-methylthioadenosine phosphorylase (MTAP); alpha	2e-31
1wta_A	275	5'-methylthioadenosine phosphorylase; A/B structur	9e-30
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	2e-19
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	4e-16
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	8e-18
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	1e-15
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	5e-17
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	7e-16
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	3e-14
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	2e-04
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	8e-14
1wb1_A	482	Translation elongation factor SELB; selenocysteine	3e-13
1wb1_A	482	Translation elongation factor SELB; selenocysteine	5e-08
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	4e-13
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	4e-11
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	3e-07
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	5e-05
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	1e-04
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	2e-04
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	2e-04
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	3e-04
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	3e-04

>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Length = 373

 Score =  439 bits (1132), Expect = e-154
 Identities = 169/281 (60%), Positives = 212/281 (75%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
            YTY+ +Q IA +LL+   +RPK+GIICGSGL T+A+ +TD   F Y+TIP+FPVSTV G
Sbjct: 89  GYTYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAG 148

Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
           H G+LVFG + G+P+MCMQGRFH+YEGYPL KCAMP+RVM L+G THL+ATNAAGG NP 
Sbjct: 149 HVGRLVFGYLAGVPVMCMQGRFHHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPK 208

Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
           Y VGDIM+IKDHINLMGFAGNNPL G N++RFGPRF  M   Y+ +L      IAR + +
Sbjct: 209 YRVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANTYDPKLNQQAKVIARQIGI 268

Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
            + ++EGVY+ +GGPNFETVAE+ ML + GVDA+GMSTVHE+ITA HCGMT  AFSLITN
Sbjct: 269 ENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITN 328

Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
            C   Y++  E  H+ ++  GK R   +   V+RIV +I  
Sbjct: 329 MCTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHIHY 369

>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Length = 284

 Score =  435 bits (1122), Expect = e-154
 Identities = 150/282 (53%), Positives = 194/282 (68%)

Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60

Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120

Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180

Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + DY+   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} Length = 285

 Score =  434 bits (1118), Expect = e-153
 Identities = 130/280 (46%), Positives = 172/280 (61%)

Query: 126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH 185
             Y+L +  A +L   + IRP +GI+CGSGL  I DS+       Y  IP FPV +V GH
Sbjct: 2   TDYDLAKETAAWLNKQLQIRPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGH 61

Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G L+FG +NG+  +CM+GRFH YEG+   +   P+RV K +GV  ++ TNAAGGLNP Y
Sbjct: 62  AGSLIFGSVNGVSCVCMKGRFHLYEGHTAARATFPMRVFKALGVKIVVLTNAAGGLNPSY 121

Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
             GD M+++DHINL G AG NPL G N+D  G RFP M   Y+K LR   +  AR+L MS
Sbjct: 122 RPGDFMVVRDHINLPGLAGANPLTGPNDDTEGERFPSMTSVYDKTLRKYAISAARELGMS 181

Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
               EGVY  + GP+FET AE  +LR+ G DAVGMST  E I A H GM   A SLI+N 
Sbjct: 182 YATHEGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNV 241

Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
             ++ +  AE  HEEV++AG+     + ++V  ++  I  
Sbjct: 242 IASNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKIRG 281

>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Length = 287

 Score =  434 bits (1118), Expect = e-153
 Identities = 126/281 (44%), Positives = 179/281 (63%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
           +   E ++ +A  +    SI P+IGIICGSGL  +AD + D+   PY  IP FP ++V G
Sbjct: 6   TANIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVG 65

Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
           H G L+FG ++G  ++ MQGRFH YEGY     A+PIRVMKL+GV  L+ +NAAGGLN  
Sbjct: 66  HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRS 125

Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
            ++GD +I+KDHI L G   NN L+G N++ FG RFP ++ AY++ LR   + +A +   
Sbjct: 126 LKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGF 185

Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
            ++V +GVY + GGP +ET AE  ML   G D VGMST+ EV+ A HCG+ V A SL+TN
Sbjct: 186 GNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTN 245

Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
             V D +   + NHEEV+  G  R  +++S   +I+  + +
Sbjct: 246 ISVLDVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKLPK 286

>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Length = 324

 Score =  435 bits (1120), Expect = e-153
 Identities = 149/285 (52%), Positives = 193/285 (67%)

Query: 119 MEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFP 178
              M   YTYE  ++ A++LL     RP++ IICGSGL  + D +T   IF Y  IP FP
Sbjct: 33  PTLMENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFP 92

Query: 179 VSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA 238
            STVPGH G+LVFG +NG   + MQGRFH YEGYPLWK   P+RV  L+GV  L+ TNAA
Sbjct: 93  RSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAA 152

Query: 239 GGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI 298
           GGLNP +EVGDIM+I+DHINL GF+G NPL G N++RFG RFP M+ AY++ +R   L  
Sbjct: 153 GGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALST 212

Query: 299 ARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTA 358
            + +     ++EG Y ++ GP+FETVAE  +L+  G DAVGMSTV EVI A HCG+ V  
Sbjct: 213 WKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFG 272

Query: 359 FSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           FSLITNK + DY+   +ANHEEV+ AGK     ++  V+ +++ I
Sbjct: 273 FSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI 317

>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Length = 287

 Score =  406 bits (1047), Expect = e-142
 Identities = 111/277 (40%), Positives = 157/277 (56%), Gaps = 8/277 (2%)

Query: 128 YELIQSIAKFLLDS-ISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHK 186
            EL     K++       +P+I  I GSGL  + D IT+     Y  IP FPVS+V GH 
Sbjct: 15  NELPFQAVKYIQKIKPGFKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHA 74

Query: 187 GQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE 246
           G+LV G + G+P+MCM+GR H+YEG  +     P+R  KL+G   L  TNAAG L P+  
Sbjct: 75  GELVLGDLCGVPVMCMKGRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVL 134

Query: 247 VGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSS 306
            G ++++KDHIN M      PL+G N+DRFGPRF  +  AY+K LRA    IA+ L++  
Sbjct: 135 PGSVVMLKDHINTM---PGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIP- 190

Query: 307 IVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC 366
            + EGV+    GP FET AE+ M++I G D VGMS V EV++A HCG+ V A + ITN  
Sbjct: 191 -LTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLA 249

Query: 367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
             +       +HE+ ++  K+       ++   +   
Sbjct: 250 --EGLSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSK 284

>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Length = 277

 Score =  402 bits (1035), Expect = e-141
 Identities = 107/276 (38%), Positives = 155/276 (56%), Gaps = 12/276 (4%)

Query: 125 SYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG 184
            +  + I+    F+ +  ++ P I II GSG     + + D  I  Y  IP+FP  TV G
Sbjct: 11  HHMMKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEG 70

Query: 185 HKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD 244
           H G+LVFG I+  P+M M GRFH YEG+     A P+ + K VGV  ++ TNAAG +NP+
Sbjct: 71  HSGKLVFGRISDKPVMIMAGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPE 130

Query: 245 YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNM 304
           ++ G+I++++D IN M     NPL G N+++ GPRFP M+   + +       I   L+ 
Sbjct: 131 FKPGEIILVRDIINFM---FRNPLRGPNDEKIGPRFPDMSSVVDPEWARK---IQERLS- 183

Query: 305 SSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN 364
              +KEGVY  + GP++ET AE+ +    G D VGMSTV EVI A HCG+ V  FS +TN
Sbjct: 184 ---LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTN 240

Query: 365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
                       +HEEV++  K+    I+  +T  V
Sbjct: 241 MAAGITHG--RLSHEEVVRTTKMAQGKIEKALTTAV 274

>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Length = 303

 Score =  400 bits (1029), Expect = e-140
 Identities = 114/297 (38%), Positives = 159/297 (53%), Gaps = 10/297 (3%)

Query: 107 KTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR 166
           + +  A++T G   G       + I     FL      +P+ G+I GSGL  +A+ I + 
Sbjct: 17  RGSHMASMTGGQQMGRGSMSLLKKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENA 76

Query: 167 HIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL 226
            +  Y  IP +  STV GH G+L++G + G  ++ +QGRFHYYEG  +     PIR+MK 
Sbjct: 77  LVLNYADIPNWGRSTVSGHAGKLIYGELAGRKVLALQGRFHYYEGNSMELVTFPIRIMKA 136

Query: 227 VGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA 286
           +G   L+ TNAAGG+   +  G +M I DHINL    G NPL+G N D FG RFP M+ A
Sbjct: 137 LGCQGLIVTNAAGGIG--FGPGTLMAISDHINLT---GANPLMGENLDDFGFRFPDMSNA 191

Query: 287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEV 346
           Y    R     +A  + +   + EGVY  + GP++ET AE+   +  G DAVGMSTV EV
Sbjct: 192 YTADYREVAHQVADKIGIK--LDEGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEV 249

Query: 347 ITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           I A H G+ V   S ITN         +E NHEEV+   +      K +V  I+  +
Sbjct: 250 IVAVHSGLKVLGISAITNYAA---GFQSELNHEEVVAVTQQIKEDFKGLVKAILVEL 303

>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Length = 268

 Score =  376 bits (968), Expect = e-131
 Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 20/279 (7%)

Query: 125 SYTYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSI-TDRHIFPYDTIPYFPVSTV 182
               EL +  A+ + D   I    + ++ GSG      ++ +   + P   +P F   T 
Sbjct: 6   PDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTA 65

Query: 183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
            GH G+L+   I    ++ + GR H YEG+ L     P+R  +  G   ++ TNAAGGL 
Sbjct: 66  AGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLR 125

Query: 243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
            D +VG  ++I DH+NL      +PL        G  F  +  AY+ +LR    ++AR  
Sbjct: 126 ADLQVGQPVLISDHLNLT---ARSPL-------VGGEFVDLTDAYSPRLR----ELARQS 171

Query: 303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
           +    + EGVY+ + GP++ET AE+ ML+  G D VGMSTVHE I A   G  V   SL+
Sbjct: 172 DPQ--LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLV 229

Query: 363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
           TN            +H EV+ AG      + +++  +++
Sbjct: 230 TNLAA--GITGEPLSHAEVLAAGAASATRMGALLADVIA 266

>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Length = 266

 Score =  363 bits (935), Expect = e-126
 Identities = 79/278 (28%), Positives = 127/278 (45%), Gaps = 23/278 (8%)

Query: 125 SYTYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITD-RHIFPYDTIPYFPVSTV 182
           +  + + ++ A  +  +  +    + ++ GSG    A+ + +     P   IP F   T 
Sbjct: 8   TDPFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSSVTR 67

Query: 183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
                 +     +    + +  R H YEG  +      +R     G   L+ TN  GGLN
Sbjct: 68  SIR---VERADGSVRHALVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLN 124

Query: 243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
            ++  G  +++ DHINL      +PL        GP F  +   Y+ +LR    ++A  +
Sbjct: 125 QEWGAGTPVLLSDHINLT---ARSPL-------EGPTFVDLTDVYSPRLR----ELAHRV 170

Query: 303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
           + +  + EGVY+   GP++ET AE+ M  I G D VGMST  E I A HCG+ V   SL+
Sbjct: 171 DPT--LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLV 228

Query: 363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
           TN            +H EVI+AG+  GP I +++  I 
Sbjct: 229 TNLAAGISP--TPLSHAEVIEAGQAAGPRISALLADIA 264

>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Length = 283

 Score =  125 bits (315), Expect = 3e-33
 Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 37/282 (13%)

Query: 140 DSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPI 199
            + +   KIGII G+GL    + +  R     DT P+   S        L+ G I  +  
Sbjct: 4   GTTTTAVKIGIIGGTGLDDP-EILEGRTEKYVDT-PFGKPS------DALILGKIKNVDC 55

Query: 200 MCMQ--GRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGD 249
           + +   GR H           MP +V        +K  G TH++ T A G L  + + GD
Sbjct: 56  VLLARHGRQHTI---------MPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGD 106

Query: 250 IMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVK 309
           I+II   I+       +   G +    G    PM + +  + R   ++ A+ L +     
Sbjct: 107 IVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLR-CHS 165

Query: 310 EGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTD 369
           +G    I GP F + AE  M R  G D + M+TV EV+ A   G+   + ++      TD
Sbjct: 166 KGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAM-----ATD 220

Query: 370 YD----DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ 407
           YD         + + V++  K      KS++   +  IG  +
Sbjct: 221 YDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTE 262

>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Length = 259

 Score =  123 bits (312), Expect = 4e-33
 Identities = 56/269 (20%), Positives = 98/269 (36%), Gaps = 39/269 (14%)

Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ-- 203
               II G+GL+ + + +T     P +T PY   S        L  G   G  ++ +   
Sbjct: 16  SVYAIIGGTGLTQL-EGLTLSESLPIET-PYGAPS------APLQRGRYAGREVLFLARH 67

Query: 204 GRFHYYEGYPLWKCAMP--------IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKD 255
           G  H +          P        +  +K  G   ++A NA GG++     G + +   
Sbjct: 68  GHPHRF---------PPHQVNYRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQ 118

Query: 256 HINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSV 315
            I+   +           D         +  Y++ LR   ++  R L ++     GVY+ 
Sbjct: 119 LID---YTSGREHTYFAGDIEHVTHIDFSHPYDEPLRQRLIEALRALGLA-HSSHGVYAC 174

Query: 316 IGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD---D 372
             GP  ETVAE+  L   G D VGM+ + E   A    +     +L     V +      
Sbjct: 175 TQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLAL-----VVNPAAGKS 229

Query: 373 HAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
                  E+ QA       ++ ++ R+++
Sbjct: 230 AGIITMAEIEQALHDGIGKVREVLARVLA 258

>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Length = 270

 Score =  119 bits (301), Expect = 2e-31
 Identities = 66/291 (22%), Positives = 103/291 (35%), Gaps = 63/291 (21%)

Query: 139 LDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIP 198
           +   + +  IGII GSGL       ++       T PY   S        +  G I    
Sbjct: 1   MIEQNEKASIGIIGGSGLYDP-GIFSESKEIKVYT-PYGQPS------DFITIGKIGNKS 52

Query: 199 IMCMQ--GRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVG 248
           +  +   GR H            P ++        +K +GV  +++ +A G L  DY++G
Sbjct: 53  VAFLPRHGRGHRI---------PPHKINYRANIWALKELGVRWVISVSAVGSLRMDYKLG 103

Query: 249 DIMIIKDHINLMGFAGNNPLLGVNEDRFGPR-----------FPPMNKAYNKQLRAATLD 297
           D +I    I                D    R              M   +   LR   ++
Sbjct: 104 DFVIPDQFI----------------DMTKNREYSFFDGPVVAHVSMADPFCNSLRKLAIE 147

Query: 298 IARDLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTV 356
            A++LN+    + G Y  I GP F T AE    R +   D +GM+ V EV  A    M  
Sbjct: 148 TAKELNI-KTHESGTYICIEGPRFSTRAESRTWREVYKADIIGMTLVPEVNLACEAQMCY 206

Query: 357 TAFSLITNKCVTDYD--DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE 405
              ++     VTDYD         EEV +         K ++  ++  + E
Sbjct: 207 ATIAM-----VTDYDVFAEIPVTAEEVTRVMAENTEKAKKLLYALIQKLPE 252

>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Length = 275

 Score =  115 bits (290), Expect = 9e-30
 Identities = 61/289 (21%), Positives = 101/289 (34%), Gaps = 64/289 (22%)

Query: 143 SIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCM 202
            +R  +G+I GSGL      + +       T PY   S        +V G + G+ +  +
Sbjct: 9   GVRAHVGVIGGSGLYDP-GIVENPVEVKVST-PYGNPS------DFIVVGDVAGVKVAFL 60

Query: 203 Q--GRFHYYEGYPLWKCAMPIRV--------MKLVGVTHLLATNAAGGLNPDYEVGDIMI 252
              GR H            P  +        +K +GV  +++ +A G L  DY  GD ++
Sbjct: 61  PRHGRGHRI---------PPHAINYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVV 111

Query: 253 IKDHINLMGFAGNNPLLGVNEDRFGPRFP------------PMNKAYNKQLRAATLDIAR 300
               I                D    R               M   + + LR   +D  R
Sbjct: 112 PDQFI----------------DMTKNRRHYTFYDGPVTVHVSMADPFCEDLRQRLIDSGR 155

Query: 301 DLNMSSIVKEGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAF 359
            L  + + + G Y  I GP F T AE  + + +   D +GM+ V E+  A    +     
Sbjct: 156 RLGYT-VHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATL 214

Query: 360 SLITNKCVTDYD--DHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH 406
           ++     VTDYD         EEV +         + M+  ++  +   
Sbjct: 215 AM-----VTDYDVWADRPVTAEEVERVMISNVERARRMLYDVIPKLAGE 258

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289

 Score = 90.4 bits (224), Expect = 2e-19
 Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 77  NSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
            S++ +  K+ + R KPH N+GTIGHVDHGKTTLTAAIT  L +   G+   ++ I
Sbjct: 279 MSKQSHMSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI 334

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289

 Score = 79.6 bits (196), Expect = 4e-16
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGII 56
           D E+ ELVEME+RELL++  + GD+ P V+GSAL ALEG       I
Sbjct: 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKI 473

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405

 Score = 83.8 bits (208), Expect = 8e-18
 Identities = 23/41 (56%), Positives = 26/41 (63%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGS 125
           K  + R KPH N+GTIGHVDHGKTTLTAA+T          
Sbjct: 2   KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV 42

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGIIPLYPNDKFEINKL 69
           D E+ +LVEME+R+LL +  + GDEVP ++GSAL ALE                 +I +L
Sbjct: 143 DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWEL 202

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 30/45 (66%), Positives = 39/45 (86%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
           D+EM ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G
Sbjct: 134 DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELG 178

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397

 Score = 77.6 bits (192), Expect = 7e-16
 Identities = 29/41 (70%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYT-YELI 131
           KPH N+GTIGHVDHGKTTLTAAITK L EG    +  YE I
Sbjct: 1   KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI 41

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRP- 146
           + + +P  NIG +GHVDHGKTTL  AIT       LG        +     +     +P 
Sbjct: 2   WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-------YAETNIGVCESCKKPE 54

Query: 147 --KIGIIC 152
                  C
Sbjct: 55  AYVTEPSC 62

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 3/41 (7%)

Query: 10  DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
             E         +      G   + VP +  SAL  +    
Sbjct: 144 KEEALSQYRQIKQFTK---GTWAENVPIIPVSALHKINIDS 181

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410

 Score = 71.5 bits (176), Expect = 8e-14
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 83  AEKQVYSRDKPHCNIGTIGHVDHGKTTLTAAITK 116
            EK      +   NIG +GHVDHGKTTLT A+T 
Sbjct: 1   GEK--RKSRQAEVNIGMVGHVDHGKTTLTKALTG 32

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 82  YAEKQVYSRDKPH-----CNIGTIGHVDHGKTTLTAAITK 116
           +         +PH      N+G  GH+DHGKTTL+  +T+
Sbjct: 2   HHHHHHSIEGRPHMDFKNINLGIFGHIDHGKTTLSKVLTE 41

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 6   IDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
            D A  E  +  EM M+ +L            +  SA       E
Sbjct: 135 SDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVDE 178

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 90  RDKPHCNIGTIGHVDHGKTTLTAAITK 116
             +   NIG +GHVDHGKT+LT A+T 
Sbjct: 4   GSQAEVNIGMVGHVDHGKTSLTKALTG 30

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLTAAITK 116
             +  R     N+  IG    G+T+L A + K
Sbjct: 12  SGLVPRGSHMANVAIIGTEKSGRTSLAANLGK 43

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 4/50 (8%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 6   IDAADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIGI 55
            D+      + ++ +++ + +  G    +   +  +   + +   P  G+
Sbjct: 122 SDSTHMHAIDELKAKLKVITS--GTVLQDWECISLNTNKSAKN--PFEGV 167

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 49  KEPEIGIIPLYPNDKFEINKLNVFVPLINSRRGYAEKQVYSRDKPHCNIGTIGHVDHGKT 108
           +E E        ND+  + +          ++ +          PH +   +GHVD GK+
Sbjct: 122 EESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKS 181

Query: 109 TLT 111
           TL 
Sbjct: 182 TLM 184

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 85  KQVYSRDKPHCNIGTIGHVDHGKTTLT 111
                   PH +   +GHVD GK+TL 
Sbjct: 24  SAFVKSALPHLSFVVLGHVDAGKSTLM 50

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 89  SRDKPHCNIGTIGHVDHGKTTLT 111
           S  KP  ++   GHVD GK+T+ 
Sbjct: 172 SNPKPVVHLVVTGHVDSGKSTML 194

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 89  SRDKPHCNIGTIGHVDHGKTTLT 111
            ++K H N+  IGHVD GK+T T
Sbjct: 2   GKEKSHINVVVIGHVDSGKSTTT 24

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 91  DKPHCNIGTIGHVDHGKTTLT 111
            KPH N+  IGHVDHGK+TL 
Sbjct: 3   QKPHLNLIVIGHVDHGKSTLV 23

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 91  DKPHCNIGTIGHVDHGKTTLT 111
            K H NI  IGHVD GK+TL 
Sbjct: 40  GKEHVNIVFIGHVDAGKSTLG 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
3fuc_A	284	Purine nucleoside phosphorylase; recombinant, glyc	100.0
3khs_A	285	Purine nucleoside phosphorylase; alpha-beta struct	100.0
3phb_E	324	Purine nucleoside phosphorylase; PNP,immucillin, t	100.0
3la8_A	303	SMU.1229, putative purine nucleoside phosphorylase	100.0
3odg_A	287	Xanthosine phosphorylase; structural genomics, PSI	100.0
1vmk_A	277	Purine nucleoside phosphorylase; TM1596, structura	100.0
1tcv_A	287	Purine-nucleoside phosphorylase; transferase; HET:	100.0
2p4s_A	373	Purine nucleoside phosphorylase; transferase; HET:	100.0
1g2o_A	268	Purine nucleoside phosphorylase; trimer, transitio	100.0
1qe5_A	266	Pentosyltransferase; enzyme, purine nucleoside pho	100.0
3ozb_A	259	Methylthioadenosine phosphorylase; 5'-methylthioin	100.0
1wta_A	275	5'-methylthioadenosine phosphorylase; A/B structur	100.0
2a8y_A	270	5'-methylthioadenosine phosphorylase (MTAP); alpha	100.0
1cb0_A	283	Protein (5'-deoxy-5'-methylthioadenosine phosphor;	100.0
3nm6_B	230	MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {	99.93
3o4v_A	234	MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr	99.92
3dp9_A	231	MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi	99.92
2h8g_A	267	5'-methylthioadenosine nucleosidase; protein-adeni	99.92
3bsf_A	254	AT4G34840, nucleosidase; alpha-beta, hydrolase; HE	99.92
3eei_A	233	5-methylthioadenosine nucleosidase/S- adenosylhomo	99.91
4g41_A	236	MTA/SAH nucleosidase; mixed alpha/beta, hydrolase,	99.91
3bl6_A	230	5'-methylthioadenosine nucleosidase/S- adenosylhom	99.91
1zos_A	230	5'-methylthioadenosine / S-adenosylhomocysteine nu	99.9
1odk_A	235	Purine nucleoside phosphorylase; alpha-beta protei	99.89
1z34_A	235	Purine nucleoside phosphorylase; alpha-beta-alpha	99.88
2b94_A	267	Purine nucleoside phosphorylase; SGPP, structural	99.88
1je0_A	236	MTAP;, 5'-methylthioadenosine phosphorylase; alpha	99.88
1vhw_A	253	Purine nucleoside phosphorylase; structural genomi	99.88
3uaw_A	235	PNP, purine nucleoside phosphorylase DEOD-type; ne	99.88
3u40_A	242	Pnpase, purine nucleoside phosphorylase; structura	99.87
1ybf_A	268	AMP nucleosidase; structural genomics, protein str	99.87
3phc_A	275	Purine nucleoside phosphorylase; PNP,immucillin, t	99.86
3ddo_A	253	Urdpase, upase, uridine phosphorylase; transferase	99.86
3qpb_A	282	Uridine phosphorylase; hexamer, NP-I superfamily,	99.85
3mb8_A	279	Purine nucleoside phosphorylase; PNP, immucillin H	99.83
1t8s_A	484	AMP nucleosidase; alpha-beta-alpha sandwich, alpha	99.77
3bje_A	349	Nucleoside phosphorylase, putative; uridine phosph	99.56
3euf_A	328	Uridine phosphorylase 1; nucleoside phosphorylase,	99.56
3p0f_A	297	Uridine phosphorylase 2; transferase; HET: BAU; 1.	99.55
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.53
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.48
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.44
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.43
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.34
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.22
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.21
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.17
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.07
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.06
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.06
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.01
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.99
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.97
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.96
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.96
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.95
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.94
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.9
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.72
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.62
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.55
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.52
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.48
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.41
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.3
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.27
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.11
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.05
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.93
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.46
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.68
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.53
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.53
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.43
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.31
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.26
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.13
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.09
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.07
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.06
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.57
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	95.39
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.36
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	95.35
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	94.55
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.36
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	94.1
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	93.65
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.6
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.51
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.4
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	93.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.31
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	93.22
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.21
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.18
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	93.11
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	93.09
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.03
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.98
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	92.58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.55
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.5
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.49
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.33
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.32
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.28
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.14
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.12
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.97
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	91.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	91.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.85
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.76
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.68
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.65
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	91.63
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.61
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.57
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.56
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.54
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.46
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.38
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.3
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.18
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.15
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.05
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.01
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	90.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	90.91
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.87
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	90.86
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	90.84
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	90.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	90.72
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.67
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	90.63
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.59
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.49
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.41
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.37
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	90.36
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	90.29
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	90.29
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.22
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	90.21
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	90.16
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	90.15
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	90.1
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.07
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.02
1nrj_B	218	SR-beta, signal recognition particle receptor beta	89.99
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	89.95
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	89.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	89.84
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	89.75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	89.74
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	89.71
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	89.71
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	89.68
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	89.48
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	89.37
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	89.35
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	89.31
2ged_A	193	SR-beta, signal recognition particle receptor beta	89.11
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	89.09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	89.03
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	89.02
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.02
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	89.01
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	88.93
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	88.89
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	88.73
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	88.71
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	88.7
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	88.52
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	88.41
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	88.39
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	88.29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	88.26
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	88.2
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	88.2
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	88.12
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	88.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	87.97
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	87.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	87.87
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	87.78
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	87.73
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	87.72
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	87.64
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	87.57
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	87.53
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	87.5
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.33
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	87.44
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	87.41
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	87.4
2hf9_A	226	Probable hydrogenase nickel incorporation protein	87.32
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	87.28
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	87.11
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	86.98
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	86.93
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	86.92
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	86.83
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	86.62
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	86.58
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	86.52
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	86.52
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	86.5
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	86.48
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	86.44
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	86.44
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	86.27
1g6h_A	257	High-affinity branched-chain amino acid transport	86.25
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	86.24
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	86.16
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	85.78
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	85.74
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	85.53
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	85.5
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	85.46
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	85.46
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	85.41
1ji0_A	240	ABC transporter; ATP binding protein, structural g	85.41
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	85.38
1b0u_A	262	Histidine permease; ABC transporter, transport pro	85.28
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	85.25
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	85.22
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	85.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	85.06
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	85.05
2ghi_A	260	Transport protein; multidrug resistance protein, M	85.03
3llu_A	196	RAS-related GTP-binding protein C; structural geno	84.98
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	84.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	84.81
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	84.74
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	84.72
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	84.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	84.68
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	84.64
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	84.61
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	84.55
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	84.42
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	84.4
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	84.35
1sgw_A	214	Putative ABC transporter; structural genomics, P p	84.1
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	84.07
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	83.72
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	83.7
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	83.65
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	83.64
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	83.63
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	83.63
1via_A	175	Shikimate kinase; structural genomics, transferase	83.63
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	83.58
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	83.49
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	83.45
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	83.45
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	83.39
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	83.32
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	83.29
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	83.25
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	83.13
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	83.09
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	83.06
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	83.05
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	82.99
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	82.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	82.84
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	82.8
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	82.78
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	82.72
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	82.69
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	82.6
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	82.55
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	82.49
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	82.4
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	82.38
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	82.38
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	82.27
3kta_A	182	Chromosome segregation protein SMC; structural mai	82.17
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	82.05
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	82.01
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	81.98
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	81.98
2vli_A	183	Antibiotic resistance protein; transferase, tunica	81.96
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	81.92
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	81.84
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	81.76
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	81.73
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	81.55
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	81.46
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	81.38
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	81.24
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	81.23
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	81.13
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	81.1
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	81.01
4a74_A	231	DNA repair and recombination protein RADA; hydrola	80.79
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	80.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	80.66
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	80.64
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	80.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	80.39
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	80.19
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	80.13

>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...

Probab=100.00  E-value=4.9e-65  Score=494.18  Aligned_cols=279  Identities=53%  Similarity=0.965  Sum_probs=259.1

Q ss_pred             hhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecce
Q psy9643         126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR  205 (412)
Q Consensus       126 ~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr  205 (412)
                      +.+++++++++||+++++.+|++|||+||||+++++.+++...++|+++|+||.++++||++++++|+++|++|+++|||
T Consensus         5 ~~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~~y~~ipgfp~stv~gh~g~l~~G~l~G~~Vv~~~Gr   84 (284)
T 3fuc_A            5 YTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGR   84 (284)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCCSEEEEECTTCGGGGGGCEEEEEEEGGGSTTCC--------CEEEEEEETTEEEEEEESC
T ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEecCchhHhhhhccCcEEEeccCCCCCCCCCccCCcccEEEEEECCEEEEEEeCC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9643         206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNK  285 (412)
Q Consensus       206 ~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~  285 (412)
                      .|.||||+|++++|++++++.+||+.||++|++|++++++++||+|+++||||++++++.+|+.|.+...+|++|+++++
T Consensus        85 ~H~yeg~~~~~v~~~~~~l~~lGv~~iI~tgaaGgl~~~~~~GDlVi~~d~i~~t~~~~~~~~~g~~~~~~g~~~~~~~~  164 (284)
T 3fuc_A           85 FHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSD  164 (284)
T ss_dssp             CCGGGTCCHHHHTHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTCCTTCSSCCTTTCCSSCCCTT
T ss_pred             ccccCCCChHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEehHHhcccCCcCCCCCcCccccccCCCcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999987667999999888888999999999


Q ss_pred             cccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeecc
Q psy9643         286 AYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK  365 (412)
Q Consensus       286 ~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~  365 (412)
                      +||++||+.+.++|+++|++..+++|+|++++||+|+|+||++++|+||+|+||||++||+++|+++|+||++|++|||+
T Consensus       165 ~~d~~L~~~~~~~a~~~gi~~~~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~I~~VTd~  244 (284)
T 3fuc_A          165 AYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK  244 (284)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSSCCEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCcceEeeEEEEecCCEEcCHHHHHHHHHcCCcEEecCHHHHHHHHHHcCCCEEEEEEEecc
Confidence            99999999999999999987238999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643         366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG  404 (412)
Q Consensus       366 a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~  404 (412)
                      ++|.++++++++|+||++.+++++.++.+||.++|++|+
T Consensus       245 a~~~~~~~~~~s~eev~~~~~~~~~~~~~l~~~~i~~l~  283 (284)
T 3fuc_A          245 VIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP  283 (284)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            987545788999999999999999999999999999875

>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0

Probab=100.00  E-value=4.6e-65  Score=494.87  Aligned_cols=280  Identities=46%  Similarity=0.818  Sum_probs=250.2

Q ss_pred             hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643         127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF  206 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~  206 (412)
                      .+++++++++||+++++.+|++|||+||||+++++.+++..+++|+++|+||.++++||++++++|+++|++|++++||.
T Consensus         3 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~~y~~ip~f~~~t~~Gh~g~l~~G~l~G~~Vv~~~Grg   82 (285)
T 3khs_A            3 DYDLAKETAAWLNKQLQIRPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGHAGSLIFGSVNGVSCVCMKGRF   82 (285)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCCEEEEECTTCGGGGGGCEEEEEEEGGGSTTCC-------CCEEEEEEETTEEEEEEESCC
T ss_pred             hHHHHHHHHHHHHHhcCCCCcEEEEecCchhhhhhhhcCcEEEeccccCCCCCCCCCCCCCceEEEEECCEEEEEEeCCC
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      |.||||+|+.++|++|+++.+||+.||++|++|++++++++||+|+++||||++++++.|||.|.+...+|++|++++++
T Consensus        83 H~yeg~~~~~v~~~i~~l~~lGv~~iI~tgaaGgl~~~~~~GDlVi~~d~id~t~~~~~~pl~g~~~~~~g~~~~~~~~~  162 (285)
T 3khs_A           83 HLYEGHTAARATFPMRVFKALGVKIVVLTNAAGGLNPSYRPGDFMVVRDHINLPGLAGANPLTGPNDDTEGERFPSMTSV  162 (285)
T ss_dssp             CGGGTCCHHHHTHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTCCTTCSCCCTTTSCSSCCCTTC
T ss_pred             cccCCCChHHhHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEeehheEecccccCCCCCcCccccccCCCCCCcCcc
Confidence            99999999999999999999999999999999999999999999999999999887789999998888899999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      ||++||+.+.++|+++|++..+++|+|++++||+|+|+||++++++||+|+||||++||+++|+++|+||++|++|||++
T Consensus       163 yd~~L~~~~~~~a~~~gi~~~~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~i~~VTd~a  242 (285)
T 3khs_A          163 YDKTLRKYAISAARELGMSYATHEGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNVI  242 (285)
T ss_dssp             BCHHHHHHHHHHHHHHTCGGGEEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHcCCCcceeeEEEEEecCCEEeCHHHHHHHHHcCCcEEeccHHHHHHHHHHCCCCEEEEEEEeccc
Confidence            99999999999999999864589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      +|.++++++++|+||++.+++++.++.+||.++|++|+.+
T Consensus       243 ~g~~~~~~~~s~~ev~~~~~~~~~~~~~lv~~~i~~l~~~  282 (285)
T 3khs_A          243 ASNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKIRGE  282 (285)
T ss_dssp             CTTCC------------CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            8755578899999999999999999999999999999765

>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.7e-65  Score=498.34  Aligned_cols=282  Identities=52%  Similarity=0.939  Sum_probs=268.9

Q ss_pred             hhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecce
Q psy9643         126 YTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR  205 (412)
Q Consensus       126 ~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr  205 (412)
                      +.+++++++++||+++++.+|++|||+||||+++++.+++..+++|+++|+||.++++||++++++|+++|++|++++||
T Consensus        40 ~~~~~~~~~~~~i~~~~~~~p~igiI~GSGL~~l~~~~~~~~~i~y~~ipgfp~stv~Ghsg~l~~G~l~G~~Vv~m~Gr  119 (324)
T 3phb_E           40 YTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGR  119 (324)
T ss_dssp             SCHHHHHHHHHHHHTTCCCCCSEEEEECTTCGGGGTTCEEEEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEESC
T ss_pred             chHHHHHHHHHHHHHhcCCCCcEEEEecCcHHHHHhhccCcEEEecccCCCCCCCCCCCCcCceEEEEECCEEEEEEeCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy9643         206 FHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNK  285 (412)
Q Consensus       206 ~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~  285 (412)
                      .|.||||+|++++|++++++.+||+.||++|++|++++++++||+|+++||||++++++.+||.|++...+|++|+++++
T Consensus       120 ~H~yeG~~~~~V~~~~~ll~~lGv~~II~tgaaGgL~~~l~~GDlVi~~d~Id~t~~~~~~pl~G~~~~~~g~~~~~m~~  199 (324)
T 3phb_E          120 FHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSD  199 (324)
T ss_dssp             CCGGGTCCHHHHTHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHHTCCTTCSSCCTTTCCSSCBCTT
T ss_pred             ccccCCCChHHHHHHHHHHHHcCCCEEEEecceeecCCCCCCCCEEEEhhHccCcCCcCCCCCcCCCccccCCCcCccCC
Confidence            99999999999999999999999999999999999999999999999999999986667999999888888999999999


Q ss_pred             cccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeecc
Q psy9643         286 AYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK  365 (412)
Q Consensus       286 ~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~  365 (412)
                      +||++||+.+.++|+++|++..+++|+|++++||+|+|+||++++++||||+||||++||+++|+++|+||++|++|||+
T Consensus       200 ~yd~~Lr~~a~~aA~~~gi~~~~~~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMet~pEa~vAr~~gi~~~~Is~VTD~  279 (324)
T 3phb_E          200 AYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNK  279 (324)
T ss_dssp             CSCHHHHHHHHHHHTTSCCSSCCEEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCceEeceEEEEecCCEEeCHHHHHHHHHcCCcEEecChHHHHHHHHHCCCCEEEEEEEecc
Confidence            99999999999999999987238999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643         366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQ  407 (412)
Q Consensus       366 a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~  407 (412)
                      ++|.++++++++|+||++.+++++.++.+||.++|++|+.+.
T Consensus       280 a~~~~~~~~~vs~eevl~~a~~~~~~~~~Lv~~~i~~l~~~~  321 (324)
T 3phb_E          280 VIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPD  321 (324)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            987555788999999999999999999999999999997643

>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*

Probab=100.00  E-value=2.6e-64  Score=489.86  Aligned_cols=267  Identities=41%  Similarity=0.696  Sum_probs=237.3

Q ss_pred             hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643         127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF  206 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~  206 (412)
                      .+++++++++||+++++..|++|||+||||+++++.+++..+++|+++|+||+++++||++++++|+++|++|++++||.
T Consensus        37 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~i~y~~ip~fp~stv~Gh~g~l~~G~l~G~~Vv~~~Gr~  116 (303)
T 3la8_A           37 LLKKIYETRDFLTAKGVQKPEFGLILGSGLGELAEEIENALVLNYADIPNWGRSTVSGHAGKLIYGELAGRKVLALQGRF  116 (303)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCSEEEECCTTCGGGGGGCEEEEEEEGGGSTTCC---------EEEEEEETTEEEEEEC-CC
T ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEEccCcHhHHHhhccCcEEEecccCCCCCCCCCCCCcCceEEEEECCEEEEEEecCc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      |.||||+|+++||++|+++.+||+.||++|++|++|  +++||+|+++||||+++   .+|+.|.+...+|++|++++++
T Consensus       117 H~yEG~~p~~V~~~i~~l~~lGv~~II~t~aaGgL~--l~~GDlVi~~d~I~~t~---~~pl~g~~~~~~G~~f~~m~~~  191 (303)
T 3la8_A          117 HYYEGNSMELVTFPIRIMKALGCQGLIVTNAAGGIG--FGPGTLMAISDHINLTG---ANPLMGENLDDFGFRFPDMSNA  191 (303)
T ss_dssp             CGGGC-CHHHHHHHHHHHHHHTCCEEEEEEEEEESS--SCTTEEEEEEEEEECSS---CCTTCC-CCGGGCCCSCCCTTS
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCCEEEEecceeccc--cCCCcEEEEhhHhhhcC---CCCCcCCcccccCCCcCCCCcc
Confidence            999999999999999999999999999999999999  99999999999999987   6899888888889999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      ||++||+.+.++|+++|++  +++|+|++++||+|+|+||++++|+||||+||||++||+++|+++|+||++|++|||++
T Consensus       192 yd~~Lr~~a~~aA~~~gi~--~~~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMst~pEa~vAre~gi~~~~Is~ITD~a  269 (303)
T 3la8_A          192 YTADYREVAHQVADKIGIK--LDEGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVHSGLKVLGISAITNYA  269 (303)
T ss_dssp             SCHHHHHHHHHHHHHHTCC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred             cCHHHHHHHHHHHHHcCCc--eEEEEEEEeeCCccCCHHHHHHHHHcCCCEEeccHHHHHHHHHHcCCCEEEEEEEeecC
Confidence            9999999999999999998  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      +|   .+++++|+||++.+++++.++.+||.++|++|
T Consensus       270 ~g---~~~~vs~eevl~~a~~~~~~~~~ll~~~i~~~  303 (303)
T 3la8_A          270 AG---FQSELNHEEVVAVTQQIKEDFKGLVKAILVEL  303 (303)
T ss_dssp             TT---C---------CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            75   46789999999999999999999999999875

>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*

Probab=100.00  E-value=1.4e-61  Score=470.15  Aligned_cols=269  Identities=41%  Similarity=0.717  Sum_probs=258.8

Q ss_pred             HHHHHHHHHHHhhhc-CCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643         128 YELIQSIAKFLLDSI-SIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF  206 (412)
Q Consensus       128 ~~~~~~~~~~i~~~~-~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~  206 (412)
                      +++++++++||++++ ..+|++|||+||||+++++.+++...+||+++|+||.++++||+++++.|+++|++|++++||.
T Consensus        15 ~~~~~~~~~~i~~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~py~~ip~fp~stv~gh~g~l~~G~l~G~~Vv~l~Gr~   94 (287)
T 3odg_A           15 NELPFQAVKYIQKIKPGFKPQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMKGRG   94 (287)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCSEEEEECTTTGGGGGGCEEEEEEEGGGSTTCCCCSSTTCCCEEEEEEETTEEEEEEESCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCChhHhhhcccceEEeccccCCCCCCCccCCCCceEEEEEECCEEEEEEECCC
Confidence            467889999999999 6899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      |.||||+++.+.+++|+++.+||+.||++|++|++++++++||+|+++|+||+++   .+|+.|++...+|++|++++++
T Consensus        95 H~~eg~~~~~~~a~i~~l~~lGv~~II~tgaaGgl~~~l~~GDlVi~~d~i~~t~---~~p~~g~~~~~~G~~~~~~~~~  171 (287)
T 3odg_A           95 HFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTMP---GTPLVGPNDDRFGPRFFSLANA  171 (287)
T ss_dssp             CGGGTTCGGGGHHHHHHHHHTTCSEEEEEEEEEESSTTSCTTCEEEEEEEECCSS---SCTTCSSCCTTTCCSSCCCTTS
T ss_pred             cccCCCCHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCCCCEEEehhhhhccC---CCCccCCCccccCCCCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999987   6899888877889999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      ||++||+.+.++|+++|++  +++|+|++++||+|+|+||+++++++|+|+||||++||+++|+++|+||++|++|||++
T Consensus       172 ~d~~L~~~a~~aA~~~gi~--~~~Gvy~~~~Gp~feT~AE~~~~r~~GadaVgMe~~pea~vA~~~gi~~~~I~~VSD~a  249 (287)
T 3odg_A          172 YDKDLRADMAKIAQQLDIP--LTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLA  249 (287)
T ss_dssp             SCHHHHHHHHHHHHHHTCC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHCCCC--EEEEEEEEecCCccCCHHHHHHHHHcCCEEEeCcHHHHHHHHHHcCCCEEEEEEEEccc
Confidence            9999999999999999998  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      +|  .++++++|+||++.+++++.++.+||.++|+++
T Consensus       250 ~g--~~~~~~s~eev~~~a~~~~~~~~~ll~~~i~~~  284 (287)
T 3odg_A          250 EG--LSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSK  284 (287)
T ss_dssp             TT--SSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87  457899999999999999999999999999988

>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1

Probab=100.00  E-value=3e-60  Score=459.10  Aligned_cols=264  Identities=41%  Similarity=0.707  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceee
Q psy9643         128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH  207 (412)
Q Consensus       128 ~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H  207 (412)
                      ..+++++++||++++...+++|||+||||+++++.+++..++||.++|+|+++|++||++++++|+++|++|++++||.|
T Consensus        14 ~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~~~~~~~~py~~ip~f~~~t~~Gh~~~l~~G~l~G~~Vv~~~GrgH   93 (277)
T 1vmk_A           14 MKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISDKPVMIMAGRFH   93 (277)
T ss_dssp             HHHHHHHHHHHHTTCCCCCSEEEEEC---CTTTTTCEEEEEEEGGGSTTCC--------CEEEEEEETTEEEEEEESCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEccCchhhHhhhcccceEEecccCCCCCCCCCCCCCceEEEEEECCEEEEEEecCCc
Confidence            46788999999999888999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy9643         208 YYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAY  287 (412)
Q Consensus       208 ~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~  287 (412)
                      .||||+|+++||++|+++.+||+.||++|++|++++++++||+|+++|+||+++   .+|+.|.+...+|++|++++++|
T Consensus        94 ~yeG~~p~~V~~~i~~l~~lGv~~II~tgaaG~l~~~l~~GDlVi~~d~i~~t~---~~p~~g~~~~~~g~~~~~~~~~~  170 (277)
T 1vmk_A           94 LYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDIINFMF---RNPLRGPNDEKIGPRFPDMSSVV  170 (277)
T ss_dssp             GGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEECSC---CCTTCSCCCTTTCCSSCCCTTCS
T ss_pred             ccCCCCHHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEEhHHHhhCC---CCCcccCCCcccCcccCCCcccc
Confidence            999999999999999999999999999999999999999999999999999987   68988887777888999999999


Q ss_pred             cHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         288 NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       288 d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      |++||+.   ++++  ++  +++|+|++++||+|+|+||++++++||||+||||++||+++|+++|+||++|++|||+++
T Consensus       171 d~~L~~~---~a~~--i~--~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~I~~ITD~a~  243 (277)
T 1vmk_A          171 DPEWARK---IQER--LS--LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAA  243 (277)
T ss_dssp             CHHHHHH---HHHH--HC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEEEECT
T ss_pred             CHHHHHH---Hhhh--CC--CceEEEEEeeCCcccCHHHHHHHHHcCCeEEecChHHHHHHHHHCCCCEEEEEEEecCcc
Confidence            9999999   5555  66  889999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       368 ~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      |  ..+++++++|+++.+++++.++.+++.++|+++
T Consensus       244 g--~~~~~~s~eev~~~~~~~~~~~~~lv~~~i~~~  277 (277)
T 1vmk_A          244 G--ITHGRLSHEEVVRTTKMAQGKIEKALTTAVEVF  277 (277)
T ss_dssp             T--C-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            6  346789999999999999999999999999763

>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*

Probab=100.00  E-value=8.5e-60  Score=458.85  Aligned_cols=275  Identities=46%  Similarity=0.797  Sum_probs=244.2

Q ss_pred             hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643         127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF  206 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~  206 (412)
                      .+++++++++||+++....|++|||+||||+++++.+++..+++|+++|+|++.+++||++++++|+++|++|++++||.
T Consensus         8 ~~~~~~~~~~~i~~~~~~~p~igiI~GSGl~~l~~~l~~~~~i~y~~ip~f~~~t~~Gh~g~l~~G~l~G~~V~~~~G~g   87 (287)
T 1tcv_A            8 NIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVGHSGNLIFGTLSGRKVVVMQGRF   87 (287)
T ss_dssp             SHHHHHHHHHHHHHHCCCCCSEEEECCTTCGGGGTTCEEEEEEEGGGSTTSCCCC---CCCEEEEEEETTEEEEEEESCC
T ss_pred             cHHHHHHHHHHHHHhCCCCCcEEEEcCCchhhHHhhcceeEEEecccCCCCCCCCCCCCCceEEEEEECCEEEEEEecCC
Confidence            45788999999999999899999999999999998999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      |.||||+|++++|++|+++.+||+.||++|+||++++++++||+|+++|||++.++.+.+|+.+.+...+|++|++++++
T Consensus        88 H~yeG~~p~~V~~~i~~l~~lGv~~iI~tgaaG~l~~~~~~GDlVi~~d~i~~~g~t~~~~~~~~~~~~~g~~~~~~~~~  167 (287)
T 1tcv_A           88 HMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNA  167 (287)
T ss_dssp             CGGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTTCTTCSSCCTTTCCSSCCCTTS
T ss_pred             cccCCCCHHHHHHHHHHHHHcCCCEEEEecceeecCCCCCCCCEEEEHHHhcccccCCCCCcccCCccccCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999222237888887776778899999999


Q ss_pred             ccHHHHHHHHHHHH--HcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeec
Q psy9643         287 YNKQLRAATLDIAR--DLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN  364 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~--~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd  364 (412)
                      ||++||+.+.++++  +.|++  +++|+|++++||+|+|+||+++++++|||+||||++||+++|+++|+||++|++|||
T Consensus       168 ~d~~L~~~~~~~a~~~~~~~~--~~~Gvy~~~~Gp~feT~aE~~~~r~~Gad~VgMe~~~ea~vA~~~gi~~~~i~~Vtd  245 (287)
T 1tcv_A          168 YDRDLRKLAVQVAEENGFGNL--VHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTN  245 (287)
T ss_dssp             BCHHHHHHHHHHHHHTTCGGG--EEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHhhhcCCCc--eeeEEEEEecCCccCCHHHHHHHHHcCCcEEcccHHHHHHHHHHCCCCEEEEEEeec
Confidence            99999999999999  77887  899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         365 KCVTDYDDH---AEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       365 ~a~~~~~~~---~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      +++ .  ++   ++++|+||++.+++++.++.+++.++|++|+.+
T Consensus       246 ~a~-~--~~~~~~~~~~eev~~~~~~~~~~~~~lv~~~i~~l~~~  287 (287)
T 1tcv_A          246 ISV-L--DVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKLPKD  287 (287)
T ss_dssp             ECC-C--CTTCC-----------CHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ccc-c--cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            995 2  34   689999999999999999999999999998653

>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae}

Probab=100.00  E-value=6.9e-57  Score=448.99  Aligned_cols=279  Identities=60%  Similarity=1.062  Sum_probs=258.3

Q ss_pred             hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEeccee
Q psy9643         127 TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRF  206 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~  206 (412)
                      .+++++++++||+++....+++|||+||||+++++.+++..+++|+++|+|++.|++||++++++|+++|++|++++||.
T Consensus        91 ~~~~~~~a~~~i~~~~~~~p~igIIgGSGL~~la~~le~~~~i~y~~ipgfp~sTv~Gh~g~l~~G~l~G~~Vvvm~Grg  170 (373)
T 2p4s_A           91 TYDTLQEIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAGHVGRLVFGYLAGVPVMCMQGRF  170 (373)
T ss_dssp             CHHHHHHHHHHHHHHCCCCCSEEEEECTTCTHHHHTCEEEEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEESCC
T ss_pred             CHHHHHHHHHHHHhccCCCCcEEEECCccHhHHHhhcCeeEEEecccCCCCCCCCCCCCCceeEEEEECCEEEEEEeCCC
Confidence            35788999999999988899999999999999988899999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy9643         207 HYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKA  286 (412)
Q Consensus       207 H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~  286 (412)
                      |.||||.+..+++++|+++.+||+.||++|+||++++++++||+|+++|+||+++..+.+|+.|.+...++++|++++++
T Consensus       171 H~yeg~~v~~v~a~i~llk~lGV~~II~tgaaGgL~~~l~pGDlVI~~d~Id~dd~t~~~pl~g~~~~~~gv~~~~ms~~  250 (373)
T 2p4s_A          171 HHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPKYRVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANT  250 (373)
T ss_dssp             CGGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEECHHHHTTCCTTCSCCCTTTCCSCBCCTTS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCEEEEeccEeecCCCCCCCCEEEEhHHhcCcCcCCCCCccccCccccCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999322237899888777788899999999


Q ss_pred             ccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         287 YNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       287 ~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      ||++||+.+.++++++|++..+++|+|++++||+|+|+||+++|++||||+||||++||+++|+++|+||++|++|||++
T Consensus       251 yd~~Lr~~a~~aA~~~gi~~~~~~Gvyv~~~GP~FeT~AE~r~lr~~GadaVgMetapEa~lAre~Gi~~~~I~~VTD~a  330 (373)
T 2p4s_A          251 YDPKLNQQAKVIARQIGIENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITNMC  330 (373)
T ss_dssp             BCHHHHHHHHHHHHHTTCGGGEEEEEEEECCCSSCCCHHHHHHHHHTTCCEEESSSHHHHHHHHHTTCEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHcCCCcceeeEEEEEeeCCcccCHHHHHHHHHcCCeEEecChHHHHHHHHHcCCCEEEEEEeeccc
Confidence            99999999999999999832389999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643         367 VTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGE  405 (412)
Q Consensus       367 ~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~  405 (412)
                      ++.....++++|+||++.++++++++.++|.++|++|+.
T Consensus       331 ~~~~~~~~~vs~eEvle~~~~~~~~~~~Lv~~~I~~l~~  369 (373)
T 2p4s_A          331 TMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHIHY  369 (373)
T ss_dssp             CCCSSSCCCCCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            742111268999999999999999999999999999865

>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*

Probab=100.00  E-value=1.6e-56  Score=431.92  Aligned_cols=259  Identities=33%  Similarity=0.551  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHHHhhhcCC-CCceeEeeCcCcccccccccCce-eeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecc
Q psy9643         127 TYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITDRH-IFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG  204 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~-e~~~GIi~GsGl~~~~~~~~~~~-~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qg  204 (412)
                      .+++++++++||+++++. .+++|||+||||+++++.+++.. .+||+++|+||.++++||++++++|+++|++|++++|
T Consensus         8 ~~~~~~~~~~~i~~~~~~~~~~igiI~GSGl~~~~~~~~~~~v~~py~~~p~fp~~tv~gh~~~~~~G~l~G~~V~~~~G   87 (268)
T 1g2o_A            8 PDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAG   87 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCCSEEEEECTTCGGGSGGGCCCSEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEcCCchhhhHHhhccceeEeecccCCCCCCCcccCCCCeEEEEEECCEEEEEEEC
Confidence            457888999999999887 89999999999999998888776 8999999999999999999999999999999999999


Q ss_pred             eeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCc
Q psy9643         205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMN  284 (412)
Q Consensus       205 r~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~  284 (412)
                      |.|.||||+++.+++++|+++.+||+.||++|++|++++++++||+|+++||+|+++   .+||.|.       .|++++
T Consensus        88 ~gh~~~~~~v~~~~a~i~~l~~lGv~~iI~tgaaG~l~~~l~~GDlVi~~d~i~~t~---~~~~~g~-------~~~~~~  157 (268)
T 1g2o_A           88 RIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLTA---RSPLVGG-------EFVDLT  157 (268)
T ss_dssp             CCCGGGTCCHHHHSHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEECSS---CCSCCSS-------CCCCCT
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEEhHHhhccC---CCcCCCC-------CCCCCC
Confidence            999999999999999999999999999999999999999999999999999999987   5777653       478899


Q ss_pred             ccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeec
Q psy9643         285 KAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN  364 (412)
Q Consensus       285 ~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd  364 (412)
                      ++||++||+.+.+++++      +++|+|++++||+|+|+||+++++++|+|+||||++||+++|+++|+||++|++|||
T Consensus       158 ~~~d~~L~~~~~~~a~~------~~~Gvy~~~~Gp~feT~aE~~~~~~~GadaVgMe~~~ea~lA~~~gi~~~~i~~VtD  231 (268)
T 1g2o_A          158 DAYSPRLRELARQSDPQ------LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTN  231 (268)
T ss_dssp             TSSCHHHHHHHHHHCTT------CEEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHHHH------hCCCeEEEEeCCEEeCHHHHHHHHHcCCeEEecCHHHHHHHHHHcCCCEEEEEEEec
Confidence            99999999999999854      789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       365 ~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      +++|  ..+++++|+|+++.+++++.++.+++.++|+++
T Consensus       232 ~a~g--~~~~~~s~eev~~~~~~~~~~~~~lv~~~i~~~  268 (268)
T 1g2o_A          232 LAAG--ITGEPLSHAEVLAAGAASATRMGALLADVIARF  268 (268)
T ss_dssp             ECTT--SSCCCCCHHHHHHHHHTTHHHHHHHHHHHHHHC
T ss_pred             Cccc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9976  346789999999999999999999999999874

>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A

Probab=100.00  E-value=2.4e-54  Score=416.26  Aligned_cols=249  Identities=31%  Similarity=0.523  Sum_probs=232.2

Q ss_pred             hHHHHHHHHHHHhhhcCC-CCceeEeeCcCcccccccccCce-eeecCCCCCccccCCCCCceeEEEEeeCC-----eEE
Q psy9643         127 TYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITDRH-IFPYDTIPYFPVSTVPGHKGQLVFGLING-----IPI  199 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~-e~~~GIi~GsGl~~~~~~~~~~~-~~~~~~~~~~~i~d~pGH~~~l~~G~~~g-----~~v  199 (412)
                      .+++++++++||++++.. .+++|||+||||+++++.+++.. .++|+++|+||.        ++++|.++|     ++|
T Consensus        10 ~~~~~~~~~~~i~~~~~~~~p~igiI~GSGl~~l~~~~~~~~v~~~y~~ipg~p~--------~l~~G~l~G~~~~~~~V   81 (266)
T 1qe5_A           10 PFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSS--------VTRSIRVERADGSVRHA   81 (266)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCCSEEEECCTTCTTTTTTSCEEEEEEEGGGSTTCCC--------EEEEEEEECTTSCEEEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCchhhhHhhhccceEEEecCCCCCCCe--------EEEEEEECCcCCCceEE
Confidence            467889999999999887 79999999999999988888877 899999999986        799999999     999


Q ss_pred             EEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q psy9643         200 MCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPR  279 (412)
Q Consensus       200 v~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~  279 (412)
                      ++++||.|.||||+|+++++++|+++.+||+.||++|++|++++++++||+|+++|||++++   .+||.|       +.
T Consensus        82 v~~~Gr~h~yeg~~p~~V~a~i~~l~~lGv~~iI~tgaaG~l~~~l~~GDlVi~~d~i~~t~---~~~~~g-------~~  151 (266)
T 1qe5_A           82 LVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHINLTA---RSPLEG-------PT  151 (266)
T ss_dssp             EECCSCCCGGGSSCHHHHSHHHHHHHHTTCCEEEEEEEEEECCTTSCTTCEEEEEEEEECSS---CCSCCS-------SC
T ss_pred             EEEECCccccCCCCHHHHHHHHHHHHHcCCCEEEEecceecCCCCCCCCCEEEEhHHhhhCC---CCCCCC-------CC
Confidence            99999999999999999999999999999999999999999999999999999999999987   577654       34


Q ss_pred             CCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEE
Q psy9643         280 FPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAF  359 (412)
Q Consensus       280 ~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i  359 (412)
                      |++++++||++||+.+.++++    .  +++|+|++++||+|+|+||+++++++|||+||||++||+++|+++|+||++|
T Consensus       152 ~~~~~~~~d~~L~~~~~~~a~----~--~~~Gvy~~~~Gp~feT~aE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~i  225 (266)
T 1qe5_A          152 FVDLTDVYSPRLRELAHRVDP----T--LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGV  225 (266)
T ss_dssp             CCCCTTSBCHHHHHHHHHHCT----T--CCEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCcccCHHHHHHHHHHHH----H--hCCCeEEEeeCCEEeCHHHHHHHHHcCCeEEecChHHHHHHHHHCCCCEEEE
Confidence            788999999999999999985    3  7899999999999999999999999999999999999999999999999999


Q ss_pred             EeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         360 SLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS  401 (412)
Q Consensus       360 ~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~  401 (412)
                      ++|||+++|  ..+++++|+|+++.+++++.++.+||.++|+
T Consensus       226 ~~Vtd~a~g--~~~~~~s~eev~~~~~~~~~~~~~ll~~~i~  265 (266)
T 1qe5_A          226 SLVTNLAAG--ISPTPLSHAEVIEAGQAAGPRISALLADIAK  265 (266)
T ss_dssp             EEEEEECTT--TCSSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCccc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999976  3467899999999999999999999999885

>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.6e-49  Score=381.21  Aligned_cols=238  Identities=22%  Similarity=0.322  Sum_probs=209.4

Q ss_pred             CCCceeEeeCcCccccccc---ccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCcccc
Q psy9643         144 IRPKIGIICGSGLSTIADS---ITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCA  218 (412)
Q Consensus       144 ~e~~~GIi~GsGl~~~~~~---~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~  218 (412)
                      ..|++|||+||||+++++.   .++...+||.+           |++++++|+++|++|++++  |+.|.|   +|+.+|
T Consensus        14 ~~p~igiI~GSGl~~l~~~~~~~~~~~~tpyg~-----------~s~~l~~G~l~G~~Vv~l~rhG~gh~~---~~~~V~   79 (259)
T 3ozb_A           14 GMSVYAIIGGTGLTQLEGLTLSESLPIETPYGA-----------PSAPLQRGRYAGREVLFLARHGHPHRF---PPHQVN   79 (259)
T ss_dssp             -CCCEEEEECTTSTTCTTCCCCCCBCCCBTTBC-----------CSSCBEEEEETTEEEEEEESSCC---C---CGGGSC
T ss_pred             CCCCEEEEccCCcchhhhcccccceeEEccCCC-----------CcceEEEEEECCEEEEEEeCcCCCccc---Chhhcc
Confidence            4689999999999998752   12233444443           7889999999999999998  999985   799999


Q ss_pred             HH--HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHH
Q psy9643         219 MP--IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATL  296 (412)
Q Consensus       219 ~~--i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~  296 (412)
                      |+  +|+++.+||+.||++|++|++++++++||+|+++|++++++.++.+++.+.   .++++|++++++||++|++.+.
T Consensus        80 ~~a~i~~l~~~Gv~~II~tgaaGgl~~~l~~GDlVi~~d~i~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~L~~~~~  156 (259)
T 3ozb_A           80 YRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAGD---IEHVTHIDFSHPYDEPLRQRLI  156 (259)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEEEEECSTTSCTTCEECCSEEEECCCSSCCCSSSSS---CSSCCCCCCSSCSCHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCEEEEccceeecccccCCCCEEEehhhcccCCCCCCcCCCCc---ccCCCcCccCCCCCHHHHHHHH
Confidence            96  899999999999999999999999999999999999999985555655432   3678899999999999999999


Q ss_pred             HHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCC
Q psy9643         297 DIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEA  376 (412)
Q Consensus       297 ~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~  376 (412)
                      ++++++|++ ++++|+|++++||+|+|+||+++++++|+|+||||++||+++|+++|+||++|++|||+++|  ..++++
T Consensus       157 ~~a~~~gi~-~~~~Gvy~~~~Gp~fet~aE~~~~~~~GadaVgMe~~~ea~vA~~~gi~~~~I~~ISD~a~~--~~~~~~  233 (259)
T 3ozb_A          157 EALRALGLA-HSSHGVYACTQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVNPAAG--KSAGII  233 (259)
T ss_dssp             HHHHHTTCC-EESCCEEEECCCSSCCCHHHHHHHHHTTCSEEESSSTTHHHHHHHTTCCEEEEEEEEEECTT--TSSSCC
T ss_pred             HHHHHcCCC-eEeeeEEEEEeCCccCCHHHHHHHHHcCCEEEcCcHHHHHHHHHHcCCCeEEEEEEEeCCCC--cCCCCC
Confidence            999999997 67899999999999999999999999999999999999999999999999999999999987  456779


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         377 NHEEVIQAGKLRGPMIKSMVTRIVS  401 (412)
Q Consensus       377 s~~ev~~~~~~~~~~~~~ll~~~i~  401 (412)
                      +|+||++.++++++++.+||.++|+
T Consensus       234 s~eev~~~a~~~~~~~~~l~~~~i~  258 (259)
T 3ozb_A          234 TMAEIEQALHDGIGKVREVLARVLA  258 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998874

>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix}

Probab=100.00  E-value=5.4e-46  Score=360.32  Aligned_cols=245  Identities=24%  Similarity=0.383  Sum_probs=214.0

Q ss_pred             HhhhcCCCCceeEeeCcCccccc---ccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCC
Q psy9643         138 LLDSISIRPKIGIICGSGLSTIA---DSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGY  212 (412)
Q Consensus       138 i~~~~~~e~~~GIi~GsGl~~~~---~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~  212 (412)
                      |.++....+++|||+|||++.++   +.+++...++|.           +|+++++.|+++|++|++++  |+.|.|   
T Consensus         4 i~~~~~~~~~igIIggsgl~e~~~l~~~~~~~~~~~~g-----------~~~~~~~~G~~~G~~V~v~~r~G~gh~~---   69 (275)
T 1wta_A            4 ITRPPGVRAHVGVIGGSGLYDPGIVENPVEVKVSTPYG-----------NPSDFIVVGDVAGVKVAFLPRHGRGHRI---   69 (275)
T ss_dssp             CEESTTCCCSEEEEECGGGCCTTTCEEEEEEEECCTTC-----------CCSSCEEEEEETTEEEEEEETTTTTTCS---
T ss_pred             cccccCCCCCEEEEecCChhhhhhhhhhceeeeEEecC-----------CCcceEEEEEECCEEEEEEECCCCCCcc---
Confidence            34556667899999999998763   333333333322           15779999999999999997  999986   


Q ss_pred             CCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC-CCCCCCCCCCCCCCCCCCcccccH
Q psy9643         213 PLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN-NPLLGVNEDRFGPRFPPMNKAYNK  289 (412)
Q Consensus       213 ~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~-~pl~g~~~~~~g~~~~~~~~~~d~  289 (412)
                      +|+++||  ++++++.+||+.||++|++|++++++++||+|+++|++++++   . +|+.+.+..  +++|++++++||+
T Consensus        70 ~~~~v~~~a~~~~l~~~Gv~~iI~~gaaG~l~~~l~~GDlVi~~~~i~~~~---~~~~~~~~~~~--g~~~~~~~~~~d~  144 (275)
T 1wta_A           70 PPHAINYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTK---NRRHYTFYDGP--VTVHVSMADPFCE  144 (275)
T ss_dssp             CGGGCCHHHHHHHHHHHTCCEEEEEEEEEESSTTSCTTCEECCCEEEEECC---CCSCSCSCCSS--SCBCCCCSSCSCH
T ss_pred             ChhhhhHHHHHHHHHHcCCCEEEEecceeccCCCCCCCCEEEEhHHhhhcC---CCCccccCCCC--CcccCCCCcccCH
Confidence            8999999  899999999999999999999999999999999999999987   4 554433321  5678899999999


Q ss_pred             HHHHHHHHHHHHcCCCccee-eceEEEEecCccCCHHHHHHHH-HcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         290 QLRAATLDIARDLNMSSIVK-EGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       290 ~Lr~~~~~~a~~~g~~~~~~-~Gvy~~~~GP~feT~AE~~~~~-~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      +|++.+.++++++|++  ++ .|+|++++||+|+|+||+++++ ++|+|+||||++||+++|+++|+||++|++|||+++
T Consensus       145 ~L~~~l~~~a~~~g~~--~~~~Gv~~~~~Gp~f~t~ae~~~~~~~~GadaV~Me~a~ea~vA~~~gi~~~~i~~Vsd~a~  222 (275)
T 1wta_A          145 DLRQRLIDSGRRLGYT--VHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDV  222 (275)
T ss_dssp             HHHHHHHHHHHHHTCC--EESCCEEEEECCSSCCCHHHHHHHHHTSCCSEEESSHHHHHHHHHHTTCEEEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHcCCc--eecceEEEEecCCEecCHHHHHHHHHHcCCEEEcccHHHHHHHHHHCCCCEEEEEEEEccCC
Confidence            9999999999999998  66 9999999999999999999999 899999999999999999999999999999999996


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       368 ~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      +.  . ++++|+|+++.++++++++.+++.++|++|+.+
T Consensus       223 ~~--~-~~~~~~e~~~~~~~~~~~~~~lv~~~i~~l~~~  258 (275)
T 1wta_A          223 WA--D-RPVTAEEVERVMISNVERARRMLYDVIPKLAGE  258 (275)
T ss_dssp             SS--S-SCCCHHHHHHHHHHHHHHHHHHHHHHGGGCSSC
T ss_pred             CC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            52  2 789999999999999999999999999999653

>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A

Probab=100.00  E-value=2.2e-45  Score=355.12  Aligned_cols=240  Identities=26%  Similarity=0.383  Sum_probs=209.4

Q ss_pred             CCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCC-ceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--
Q psy9643         145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGH-KGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM--  219 (412)
Q Consensus       145 e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH-~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~--  219 (412)
                      .+++|||+|||++.++ .+.+..+.        +..+..|+ ++++++|+++|++|++++  |+.|.|   +|+++||  
T Consensus         7 ~p~igIIggsgl~e~~-~l~~~~~~--------~~~~~~g~p~~~~~~G~~~G~~V~~~~r~G~gh~~---~~~~v~~~a   74 (270)
T 2a8y_A            7 KASIGIIGGSGLYDPG-IFSESKEI--------KVYTPYGQPSDFITIGKIGNKSVAFLPRHGRGHRI---PPHKINYRA   74 (270)
T ss_dssp             CCSEEEEECTTCSSCS-CCSSEEEE--------CCCCTTCCCSSCEEEEEETTEEEEEEETTTGGGCC---CGGGCCHHH
T ss_pred             CCCEEEEecCchhHHH-HHHhhhee--------eeEEEecCCcceEEEEEECCEEEEEEECCCCCCCc---CchhhhhHH
Confidence            5789999999998764 22222211        12233455 568999999999999997  999996   8999999  


Q ss_pred             HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHH
Q psy9643         220 PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIA  299 (412)
Q Consensus       220 ~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a  299 (412)
                      ++++++.+||+.||++|++|++++++++||+|+++|++++++   .+|+.+.+..  +++|++++++||++|++.+.+++
T Consensus        75 ~~~~l~~~Gv~~iI~~gaaG~l~~~l~~GDlVi~~~~i~~~~---~~~~~~~~~~--g~~~~~~~~~~d~~L~~~~~~~a  149 (270)
T 2a8y_A           75 NIWALKELGVRWVISVSAVGSLRMDYKLGDFVIPDQFIDMTK---NREYSFFDGP--VVAHVSMADPFCNSLRKLAIETA  149 (270)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEESSTTSCTTCEECCCEEEEECC---SCCCCSCCSS--SCBCCCCSSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeeeeeccCCCCCCCCEEEEhHHhhccC---CCCCcccCCC--CCccCCCCcccCHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999987   4554433221  56788999999999999999999


Q ss_pred             HHcCCCccee-eceEEEEecCccCCHHHHHHHH-HcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643         300 RDLNMSSIVK-EGVYSVIGGPNFETVAELNMLR-ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN  377 (412)
Q Consensus       300 ~~~g~~~~~~-~Gvy~~~~GP~feT~AE~~~~~-~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s  377 (412)
                      +++|++  ++ .|+|++++||+|+|+||+++++ ++|+|+||||++||+++|+++|+||++|++|||++++  . +++++
T Consensus       150 ~~~g~~--~~~~Gv~~~~~Gp~fet~ae~~~~~~~~GadaV~Me~a~ea~vA~~~gi~~~~i~~Vsd~a~~--~-~~~~~  224 (270)
T 2a8y_A          150 KELNIK--THESGTYICIEGPRFSTRAESRTWREVYKADIIGMTLVPEVNLACEAQMCYATIAMVTDYDVF--A-EIPVT  224 (270)
T ss_dssp             HHHTCC--EESCCEEEEECCSSCCCHHHHHHHHHTTCCCEEESSHHHHHHHHHHTTCEEEEEEEEEECTTS--S-SSCCC
T ss_pred             HHcCCe--EEcceEEEEecCCEecCHHHHHHHHHHcCCEEECCcHHHHHHHHHHCCCCEEEEEEEEecCCC--C-CCCCC
Confidence            999998  66 9999999999999999999999 9999999999999999999999999999999999964  2 56799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy9643         378 HEEVIQAGKLRGPMIKSMVTRIVSYIGEH  406 (412)
Q Consensus       378 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~~  406 (412)
                      |+|+++.+++++.++.+++.++|++|+.+
T Consensus       225 ~ee~~~~~~~~~~~~~~lv~~~i~~l~~~  253 (270)
T 2a8y_A          225 AEEVTRVMAENTEKAKKLLYALIQKLPEK  253 (270)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999654

>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A

Probab=100.00  E-value=2e-40  Score=322.65  Aligned_cols=247  Identities=26%  Similarity=0.382  Sum_probs=204.9

Q ss_pred             CCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCC-CceeEEEEeeCCeEEEEe--cceeeeecCCCCccccH-
Q psy9643         144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG-HKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAM-  219 (412)
Q Consensus       144 ~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pG-H~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~-  219 (412)
                      ..+++|||+|||+..+ +.+++..+..+        .+.+| |+++++.|.++|++|+++  +|+.|.|   +|+.+|+ 
T Consensus         8 ~~~~igII~gsg~e~~-~~l~~~~~~~~--------~~p~g~~~~~~~~G~l~g~~V~~~~~~G~G~~~---~~~~v~aa   75 (283)
T 1cb0_A            8 TAVKIGIIGGTGLDDP-EILEGRTEKYV--------DTPFGKPSDALILGKIKNVDCVLLARHGRQHTI---MPSKVNYQ   75 (283)
T ss_dssp             -CCEEEEEECTTCCCG-GGSEEEEEECC--------CBTTBCCSSCEEEEEETTEEEEEEETTTTTTCC---CGGGCCHH
T ss_pred             CCCCEEEEecCCchhh-hhcccceeeee--------ecCCCCCCccEEEEEECCEEEEEEECCCCCccc---CcccccHH
Confidence            4578999999999875 23333333222        22234 567899999999999996  6999987   7788888 


Q ss_pred             -HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHH
Q psy9643         220 -PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDI  298 (412)
Q Consensus       220 -~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~  298 (412)
                       ++++++.+|++.||++|++|++++++++||+|+++|++++++.++.+++.......++.+|+++.++||++|++.+.++
T Consensus        76 ~~~~~l~~~gv~~iI~~G~aG~l~~~l~~GDiVi~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~  155 (283)
T 1cb0_A           76 ANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIET  155 (283)
T ss_dssp             HHHHHHHHTTCSEEEEEEEEEECSTTSCTTCEECCCEEEEECCSCCCCSCSSSCTTSCSEECCCCSSCSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecceeecCCCCCCCcEEEEHHHhhCcCCCCCcccCCccccccCccCCCCcccCCHHHHHHHHHH
Confidence             7899999999999999999999999999999999999999873222322110002345668889999999999999999


Q ss_pred             HHHcCCCcceee-ceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCC
Q psy9643         299 ARDLNMSSIVKE-GVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEAN  377 (412)
Q Consensus       299 a~~~g~~~~~~~-Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s  377 (412)
                      +++.|++  ++. |+|++++||+|+|++|.++++++|+|+||||++||+++|+++|+||++|++|||+++|. ..+++++
T Consensus       156 a~~~~~~--~~~gG~~~~~sG~~f~t~ae~~~~~~~Ga~~V~ME~aa~a~vA~~~gi~~~~i~~VSd~a~~~-~~~~~~~  232 (283)
T 1cb0_A          156 AKKLGLR--CHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWK-EHEEAVS  232 (283)
T ss_dssp             HHHTTCC--EESCCEEEEECCSSCCCHHHHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEEECTTC------CCC
T ss_pred             HHHcCCc--eEcceEEEEeeCCcccCHHHHHHHHHcCCeEEeCcHHHHHHHHHHcCCCEEEEEEEEccccCc-CcCCCCC
Confidence            9999998  777 89999999999999999999999999999999999999999999999999999997642 1356799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy9643         378 HEEVIQAGKLRGPMIKSMVTRIVSYIGE  405 (412)
Q Consensus       378 ~~ev~~~~~~~~~~~~~ll~~~i~~l~~  405 (412)
                      |+|+++.++++++++.+++.++|++++.
T Consensus       233 ~~e~~~~~~~~~~~~~~lv~~~i~~l~~  260 (283)
T 1cb0_A          233 VDRVLKTLKENANKAKSLLLTTIPQIGS  260 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999854

>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*

Probab=99.93  E-value=5.6e-26  Score=213.60  Aligned_cols=192  Identities=17%  Similarity=0.251  Sum_probs=152.2

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|++|+++++..        +.+++.   .++++.+|++.||++|.+|++++++++||+|+++++++++.  +
T Consensus        34 ~~~~G~~~g~~v~v~~~G~--------G~~~aa~~~~~l~~~~~~~~iI~~G~aG~l~~~~~~Gdvvi~~~~~~~d~--~  103 (230)
T 3nm6_B           34 VFHKGVYHNKEIIVAYSKI--------GKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDV--D  103 (230)
T ss_dssp             EEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEETTC--C
T ss_pred             EEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCccccEEEEeeEEEccC--C
Confidence            7899999999999886432        344443   36788899999999999999999999999999999998764  1


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc-CCHHHHHHHHH-cCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLRI-CGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f-eT~AE~~~~~~-~Gad~VgMe~  342 (412)
                      .+++ |... ...+.+ +...++|+.|++.+.+++++.+++  ++.|+++  +||+| +|++|.+.+++ +|+++|+||+
T Consensus       104 ~~~~-g~~~-g~~p~~-~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~~--sgd~f~~~~~~~~~l~~~~ga~~veME~  176 (230)
T 3nm6_B          104 LSAF-DHPL-GFIPES-AIFIETSGSLNALAKKIANEQHIA--LKEGVIA--SGDQFVHSKERKEFLVSEFKASAVEMEG  176 (230)
T ss_dssp             CGGG-TCCT-TCCTTS-CSEEECCHHHHHHHHHHHHHTTCC--EEEEEEE--ECSSCCCCHHHHHHHHHHHCCSEEESSH
T ss_pred             Cccc-CCCC-CCCCCC-CccccCCHHHHHHHHHHHHhcCCC--EEEEEEE--ECChhcCCHHHHHHHHHHcCCcEEeccH
Confidence            2222 1110 011222 234677999999999999999998  9999874  89999 89999887765 8999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ++++++|+++|+||++|+.|||+++    ++.+.+++++++.+.+++   .+++.++|++|
T Consensus       177 aa~a~~a~~~gi~~~~ir~IsD~a~----~~~~~~~~~~~~~a~~~~---~~~~~~~l~~l  230 (230)
T 3nm6_B          177 ASVAFVCQKFGVPCCVLRSISDNAD----EKAGMSFDEFLEKSAHTS---AKFLKSMVDEL  230 (230)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHHHHHHH---HHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCEEEEEEEecCCC----CCCccCHHHHHHHHHHHH---HHHHHHHHHhC
Confidence            9999999999999999999999994    456678888888777665   44667776653

>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*

Probab=99.92  E-value=9.9e-25  Score=205.75  Aligned_cols=191  Identities=20%  Similarity=0.325  Sum_probs=150.7

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHH---HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPI---RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i---~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|++|++++++.        +.+++++   ++++.+|++.||++|.+|++++++++||+|+++++++++.  +
T Consensus        34 ~~~~G~~~g~~v~v~~~Gi--------G~~~aa~~~~~li~~~~~~~iI~~G~aG~l~~~~~~GDvvi~~~~~~~d~--~  103 (234)
T 3o4v_A           34 EIYTGQLNGTEVALLKSGI--------GKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA--D  103 (234)
T ss_dssp             EEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEESSC--B
T ss_pred             EEEEEEECCEEEEEEECCC--------CHHHHHHHHHHHHHhCCCCEEEEEEEEeccCCCCCCCcEEEECeEEEccc--C
Confidence            6899999999999887542        3455543   6788899999999999999999999999999999998874  1


Q ss_pred             CCCCCCCCCCCCCCCCC--CCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHHHc--CCcEEe
Q psy9643         265 NNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLRIC--GVDAVG  339 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~--~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~~~--Gad~Vg  339 (412)
                      .+++ |..   .| .++  +..+++|++|++.+.+++++.+++  ++.|++  ++||+|. ++++.+.+++.  |+++|+
T Consensus       104 ~~~~-~~~---~g-~~p~~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~ga~~ve  174 (234)
T 3o4v_A          104 VTAF-GYE---YG-QLPGCPAGFKADDKLIAAAEACIAELNLN--AVRGLI--VSGDAFINGSVGLAKIRHNFPQAIAVE  174 (234)
T ss_dssp             CGGG-TCC---TT-CCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEE
T ss_pred             Cccc-CCc---cC-cCCCCCccccCCHHHHHHHHHHHHhcCCC--eEEeeE--EEcCeeeCCHHHHHHHHHHcCCccEee
Confidence            2333 111   11 122  234688999999999999999998  999986  5899996 57778888775  999999


Q ss_pred             CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643         340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG  404 (412)
Q Consensus       340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~  404 (412)
                      ||+++++++|+++|+||++|+.|||+++    .+...+++++++.+.   ....+++.++|++|+
T Consensus       175 ME~aa~a~va~~~~ip~~~ir~ISD~a~----~~~~~~~~~~~~~aa---~~~a~~v~~~l~~l~  232 (234)
T 3o4v_A          175 MEATAIAHVCHNFNVPFVVVRAISDVAD----QQSHLSFDEFLAVAA---KQSSLMVESLVQKLA  232 (234)
T ss_dssp             SSHHHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhCCCEEEEEEEecCCC----CcchhhHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence            9999999999999999999999999994    344455666655554   445667778887764

>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1

Probab=99.92  E-value=5.6e-25  Score=207.03  Aligned_cols=191  Identities=19%  Similarity=0.268  Sum_probs=149.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|++|+++++.        ++.+++.   .++++.+|++.||++|.+|++++++++||+|+++++++++.  +
T Consensus        32 ~~~~G~~~g~~v~v~~~G--------iG~~~aa~~~~~li~~~~~~~iI~~G~aG~l~~~~~~GDvvi~~~~~~~d~--~  101 (231)
T 3dp9_A           32 TFYSGQIQGVDVVLLQSG--------IGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHDA--D  101 (231)
T ss_dssp             EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEETTC--B
T ss_pred             EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEEEeeccCCCCcCCCEEEEeeEEEccC--C
Confidence            689999999999988643        2345553   25778899999999999999999999999999999998875  2


Q ss_pred             CCCCCCCCCCCCC-CCCCCCcccccHHHHHHHHHHHHHc-CCCcceeeceEEEEecCccC-CHHHHHHHH-Hc-CCcEEe
Q psy9643         265 NNPLLGVNEDRFG-PRFPPMNKAYNKQLRAATLDIARDL-NMSSIVKEGVYSVIGGPNFE-TVAELNMLR-IC-GVDAVG  339 (412)
Q Consensus       265 ~~pl~g~~~~~~g-~~~~~~~~~~d~~Lr~~~~~~a~~~-g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~-~~-Gad~Vg  339 (412)
                      .+++ |..   .+ ....+...++|+.|++.+.++++++ +++  ++.|++  ++||+|. ++++.+.++ ++ |+++|+
T Consensus       102 ~~~~-g~~---~g~~p~~~~~~~~d~~L~~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~ve  173 (231)
T 3dp9_A          102 VTAF-GYE---IGQMAGQPAAFKADEKLMTVAEQALAQLPNTH--AVRGLI--CTGDAFVCTAERQQFIRQHFPSVVAVE  173 (231)
T ss_dssp             CGGG-TCC---TTCCTTSCSSEECCHHHHHHHHHHHTTSTTCC--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEE
T ss_pred             CCcc-CCc---CCcCCCCCceecCCHHHHHHHHHHHHhcCCCc--eEEEEE--EECCeeeCCHHHHHHHHHhcCCCcEEe
Confidence            2333 111   11 0112345789999999999999998 888  999976  5899996 566777665 57 999999


Q ss_pred             CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ||+++++++|+++|+||++|+.|||+++    ++.+.+++++++.+.+   ...+++.++|++|
T Consensus       174 ME~aa~a~~a~~~~ip~~~ir~ISD~a~----~~~~~~~~~~~~~aa~---~~a~~v~~~l~~l  230 (231)
T 3dp9_A          174 MEASAIAQTCHQFKVPFVVVRAISDVAD----KESPLSFEEFLPLAAK---SSSAMVLKMVELL  230 (231)
T ss_dssp             SSHHHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHHHHH---HHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHcCCCEEEEEEEecCCC----CcccccHHHHHHHHHH---HHHHHHHHHHHhc
Confidence            9999999999999999999999999994    4555667776665544   4566777887765

>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*

Probab=99.92  E-value=2.9e-25  Score=214.07  Aligned_cols=198  Identities=13%  Similarity=0.187  Sum_probs=161.1

Q ss_pred             eEEEEeeCCeEEEEec-ceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCC-CCCCCCccHHHHHHHHhhccC
Q psy9643         188 QLVFGLINGIPIMCMQ-GRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGL-NPDYEVGDIMIIKDHINLMGF  262 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~q-gr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l-~~~~~~Gd~vi~~d~i~~~~~  262 (412)
                      .++.|.++|++|++++ |+.|.|||++++.++++   .++++.+|++.+|++|.+|++ ++++++||+|+++++++++. 
T Consensus        63 ~~~~G~~~g~~Vvv~~~G~~h~~~~~~~G~v~aa~~~~~ll~~~~~~~iI~~G~aGgl~~~~~~~GDvVi~~~~i~~d~-  141 (267)
T 2h8g_A           63 VLYHGVHKDLRINVVCPGRDAALGIDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDR-  141 (267)
T ss_dssp             EEEEEEETTEEEEEEECCBCTTTCSBCCSHHHHHHHHHHHHHHHCCSEEEEEEEEEECGGGTCCTTCEEEEEEEEESSC-
T ss_pred             EEEEEEECCEEEEEEECCCccccccCcccHHHHHHHHHHHHHHcCCCEEEEEEeecccCCCCCCCCCEEEEeeheeccC-
Confidence            7899999999998886 55999999999999994   478888999999999999999 89999999999999998876 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHHHcCCcEEeCc
Q psy9643         263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLRICGVDAVGMS  341 (412)
Q Consensus       263 ~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~~~Gad~VgMe  341 (412)
                        .++..+.+...++ .++.+   .|+.|++         +++  ++.|+  +++||+|. ++++.++++++|+++|+||
T Consensus       142 --~~~~~~f~~~~~~-~~p~~---~~~~L~~---------~~~--~~~G~--i~sgd~f~~~~~~~~~l~~~ga~~veME  202 (267)
T 2h8g_A          142 --RIPIPMFDLYGVG-LRQAF---STPNLLK---------ELN--LKIGR--LSTGDSLDMSTQDETLIIANDATLKDME  202 (267)
T ss_dssp             --CCCSTTHHHHHHC-CEECC---CCHHHHH---------HHC--CEEEE--EEECSCSSCCHHHHHHHHHTTCSEEESS
T ss_pred             --CCCccccCccccC-CCCCC---CCHHHHh---------CCC--eEEee--EEECCcccCCHHHHHHHHHcCCeEEecc
Confidence              2222110000001 11111   2677775         244  78997  57999998 5788888999999999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNS  410 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~~  410 (412)
                      +++++++|+++|+||++|+.|||++++    .. .+++++.+.++.+++.+.+++.++|+++....+++
T Consensus       203 ~aa~a~va~~~gip~~~Ir~ISD~a~~----~~-~s~~~~~~~~~~aa~~~~~~l~~~l~~l~~~~~~~  266 (267)
T 2h8g_A          203 GAAVAYVADLLKIPVVFLKAVTDLVDG----DK-PTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD  266 (267)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEEETTS----SS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHcCCCEEEEEEEEECccc----cc-cchHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999999999999999999999953    22 46889999999999999999999999998776543

>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana}

Probab=99.92  E-value=2.5e-25  Score=212.81  Aligned_cols=198  Identities=11%  Similarity=0.122  Sum_probs=159.7

Q ss_pred             eEEEEeeCCeEEEEe-cceeeeecCCCCccccHHH---HHHHHcCCCEEEEEeccCCC-CCCCCCccHHHHHHHHhhccC
Q psy9643         188 QLVFGLINGIPIMCM-QGRFHYYEGYPLWKCAMPI---RVMKLVGVTHLLATNAAGGL-NPDYEVGDIMIIKDHINLMGF  262 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~-qgr~H~yeg~~~~~v~~~i---~ll~~lGv~~II~~n~~G~l-~~~~~~Gd~vi~~d~i~~~~~  262 (412)
                      .++.|.++|.+|+++ +||.|.||+.+++.+++.+   ++++.+|++.+|++|.+|++ ++++++||+|+++++++++. 
T Consensus        50 ~~~~G~~~g~~V~v~~~G~~h~~~~~~iG~~~aa~~~~~ll~~~~~~~iI~~G~aGgl~~~~~~~GDvvi~~~~~~~d~-  128 (254)
T 3bsf_A           50 IMFKGMYKDLNINIVCPGKDSTLGVESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAFHDR-  128 (254)
T ss_dssp             EEEEEEETTEEEEEEECCBCTTTCSBCCSHHHHHHHHHHHHHSSCCSEEEEEEEEEECGGGTCCTTCEEEEEEEEESSC-
T ss_pred             EEEEEEECCEEEEEEECCCccccccCccCHHHHHHHHHHHHHHcCCCEEEEEEeecCcCCCCCccCCEEEEeeeeeccC-
Confidence            789999999998887 7999999877788888854   78888999999999999999 89999999999999988775 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC-CHHHHHHHHHcCCcEEeCc
Q psy9643         263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE-TVAELNMLRICGVDAVGMS  341 (412)
Q Consensus       263 ~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe-T~AE~~~~~~~Gad~VgMe  341 (412)
                        .++..+.+...++ .++.   .+|+.|++         +++  ++.|+  +++||+|. |+++.++++++|+++|+||
T Consensus       129 --~~~~~~~~~~~~~-~~p~---~~~~~L~~---------~~~--~~~G~--i~sgd~f~~~~~~~~~~~~~g~~~veME  189 (254)
T 3bsf_A          129 --RIPVPVLDIYGVG-MRNT---FPTPNLIK---------ELN--LKVGR--LSTGDSMDMSPHDEESITANDATVKDME  189 (254)
T ss_dssp             --CCCSTTHHHHHHC-CEEC---CCCHHHHH---------HTT--CEEEE--EEECSCSSCCHHHHHHHHHTTCSEEESS
T ss_pred             --CCCccccCcCCCC-cCCC---CCCHHHHh---------CCC--eEEee--EEECccccCCHHHHHHHHHcCCcEEECc
Confidence              2322110000001 1111   14777774         455  78997  57999998 8888889999999999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIGEHQLNS  410 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~~~~~~~  410 (412)
                      +++++++|+++|+||++|+.|||++++    ..+ +++++.+.++.+++.+.+++.++|+++...++++
T Consensus       190 ~aa~a~va~~~~ip~~~Ir~ISD~a~~----~~~-s~~~~~~~~~~a~~~~~~~l~~~l~~l~~~~~~~  253 (254)
T 3bsf_A          190 GAAVAYVADIFKVPTILIKGVTDIVDG----NRP-TSEEFLENLAAVTAKLDESLTKVIDFISGKCLSD  253 (254)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEEETTT----TCC-STTTTTSHHHHHHHHHHHHHHHHHHHHTTCBTTT
T ss_pred             HHHHHHHHHHcCCCEEEEEEEEEcCCC----CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc
Confidence            999999999999999999999999953    333 5677777788888888999999999998887764

>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1

Probab=99.91  E-value=1.6e-24  Score=204.11  Aligned_cols=193  Identities=19%  Similarity=0.253  Sum_probs=147.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHH---HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPI---RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i---~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|++|+++++.        ++.+++.+   ++++.+|++.||++|.+|++++++++||+|+++++++++.  +
T Consensus        35 ~~~~G~~~g~~v~v~~~G--------~G~~~aa~~~~~li~~~~~~~iI~~G~aG~l~~~~~~GDvvv~~~~~~~d~--~  104 (233)
T 3eei_A           35 SAYEGELAGKRMVLALSG--------IGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHDV--D  104 (233)
T ss_dssp             EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEECCEEEECSTTCCTTCEEEEEEEEESSC--B
T ss_pred             EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhCCCCEEEEEEEeecCCCCCccccEEEEceEEEccC--C
Confidence            789999999999988643        24455532   5678899999999999999999999999999999998764  2


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-HHHHHH-Hc-CCcEEeCc
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-ELNMLR-IC-GVDAVGMS  341 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E~~~~~-~~-Gad~VgMe  341 (412)
                      .+++ |.....  ....+..+++|+.|++.+.+++++++++ .++.|++  ++||+|.+.+ +.+.++ ++ |+++|+||
T Consensus       105 ~~~~-g~~~~~--~p~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~~G~~--~sgd~f~~~~~~~~~l~~~~~ga~~veME  178 (233)
T 3eei_A          105 VTAF-GYAWGQ--VPQLPARFASDGILIEAAKRAARTFEGA-AVEQGLI--VSGDRFVHSSEGVAEIRKHFPEVKAVEME  178 (233)
T ss_dssp             CGGG-TCCTTC--CTTSCSSEECCHHHHHHHHHHHHTCCSS-CEEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEESS
T ss_pred             cccc-CCcCCC--CCCCCccccCCHHHHHHHHHHHHhcCCC-cEEEEEE--EEcceeeCCHHHHHHHHHHcCCceEEech
Confidence            2333 221111  0112334689999999999999998875 4789976  6899997644 455665 57 99999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      +++++++|+++|+||++|+.|||+++    ++.+.+++++.+.+   +....+++.++|++|
T Consensus       179 ~aa~a~~a~~~gip~~~ir~IsD~a~----~~~~~~~~~~~~~a---a~~~~~~v~~~l~~l  233 (233)
T 3eei_A          179 AAAIAQTCHQLETPFVIIRAVSDSAD----EKADISFDEFLKTA---AANSAKMVAEIVKSL  233 (233)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEECSS----TTHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCEEEEEEEecCCC----CcchhhHHHHHHHH---HHHHHHHHHHHHHhC
Confidence            99999999999999999999999994    34445566655544   445566788887764

>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes}

Probab=99.91  E-value=3.1e-24  Score=202.52  Aligned_cols=193  Identities=13%  Similarity=0.152  Sum_probs=150.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|++|+++++..        +.++++   .+++..+|++.+|++|.+|++++++++||+|+++++++++..  
T Consensus        37 ~~~~G~~~g~~Vvv~~~G~--------G~~~aa~~~~~l~~~~~~~~ii~~G~aGgl~~~i~~GDvvi~~~~i~~d~~--  106 (236)
T 4g41_A           37 TYYTGRFGKHELILVQSGV--------GKVMSAMTVAILVEHFKAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVD--  106 (236)
T ss_dssp             EEEEEEETTEEEEEEECCS--------HHHHHHHHHHHHHHTTCCSEEEEEEEECBCSTTCCTTCEEEEEEEEESSCB--
T ss_pred             EEEEEEECCEEEEEEeCCC--------CHHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCCCCeEEEEeeeEEcCCC--
Confidence            7899999999999886432        333443   367788999999999999999999999999999998887651  


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-HH-HHHHHc-CCcEEeCc
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-EL-NMLRIC-GVDAVGMS  341 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E~-~~~~~~-Gad~VgMe  341 (412)
                      .+.+ |...  ......+..+++|+.|++.+.+++++.+.+  ++.|++  .+|++|...+ +. ++.+++ |+++||||
T Consensus       107 ~~~~-~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~i--~S~d~~~~~~~~~~~l~~~~~g~~~veME  179 (236)
T 4g41_A          107 ATAF-GYAY--GQMAGQPLYYDCDPQFVAIFKQVLKHEKTN--GQVGLI--ATGDSFVAGQDKIDQIKTAFSNVLAVEME  179 (236)
T ss_dssp             CGGG-TCCT--TCCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSBCCCCHHHHHHHHHHSTTCCEEESS
T ss_pred             CCcc-CCcC--CcCCCCCccccCCHHHHHHHHHHHHhcCCC--eeeceE--EecCCcccCHHHHHHHHHHcCCCeEEech
Confidence            2222 1110  011223456789999999999999999998  999976  4788875433 33 345565 99999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG  404 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~  404 (412)
                      +++++++|+++|+||++|+.|||++    +++.+.+++++++.+.++   ..+++.++|++||
T Consensus       180 ~aa~~~va~~~~~p~~~Ir~ISD~a----d~~~~~~~~~~~~~Aa~~---~a~~v~~~l~~lP  235 (236)
T 4g41_A          180 GAAIAQAAHTAGKPFIVVRAMSDTA----AHDANITFDQFIIEAGKR---SAQILMTFLENLP  235 (236)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEESSCT----TCCCCSCHHHHHHHHHHH---HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHcCCCEEEEEEEEeCC----CCcCcccHHHHHHHHHHH---HHHHHHHHHHHcC
Confidence            9999999999999999999999999    456778899988766554   4567888988876

>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}

Probab=99.91  E-value=3.3e-24  Score=201.27  Aligned_cols=190  Identities=17%  Similarity=0.278  Sum_probs=149.0

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH--H-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP--I-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~--i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|+++++.        ++.+++.  + ++++.+|++.+|++|.+|++++++++||+|+++++++++.  +
T Consensus        33 ~~~~G~~~g~~V~~~~~G--------~G~~~aa~~~~~l~~~~~~~~ii~~G~aG~l~~~~~~Gdvvv~~~~~~~d~--~  102 (230)
T 3bl6_A           33 KFYTGILKDREVVITQSG--------IGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDA--D  102 (230)
T ss_dssp             EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEECSEEEECSTTCCTTCEEEEEEEEESSC--C
T ss_pred             EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEEEEcCCCCCCccCCEEEECeeEEccC--C
Confidence            788999999999987632        2334443  3 5778899999999999999999999999999999998875  2


Q ss_pred             CCCCCCCCCCCCCCCCC--CCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHH-H-HHHHc-CCcEEe
Q psy9643         265 NNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAEL-N-MLRIC-GVDAVG  339 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~--~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~-~-~~~~~-Gad~Vg  339 (412)
                      .+++ |.   ..| .++  +..+++|+.|++.+.+++++.+++  ++.|++  ++||+|.+.+|. + +++++ |+++|+
T Consensus       103 ~~~~-g~---~~g-~~p~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~ve  173 (230)
T 3bl6_A          103 ATAF-GY---EYG-QIPQMPVAFQSSKPLIEKVSQVVQQQQLT--AKVGLI--VSGDSFIGSVEQRQKIKKAFPNAMAVE  173 (230)
T ss_dssp             CGGG-TC---CTT-CCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSSCCCSHHHHHHHHHHCTTEEEEE
T ss_pred             Cccc-CC---cCC-cCCCCCccccCCHHHHHHHHHHHHhcCCC--eEEeeE--eEcchhhCCHHHHHHHHHhCCCcEEEE
Confidence            3443 11   111 122  234589999999999999999988  999975  689999998874 3 56778 999999


Q ss_pred             CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ||+++++++|+++|+|+++|+.|||++.    ++.+.+++++.+.   ++++..+++.++|++|
T Consensus       174 ME~a~~~~~a~~~~~~~~~ir~IsD~~~----~~~~~~~~~~~~~---aa~~~~~~~~~~l~~~  230 (230)
T 3bl6_A          174 MEATAIAQTCYQFNVPFVVVRAVSDLAN----GEAEMSFEAFLEK---AAVSSSQTVEALVSQL  230 (230)
T ss_dssp             SSHHHHHHHHHHHTCCEEEEEEEEECSS----TTHHHHHHHHHHH---HHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHcCCCEEEEEEeccCCC----CcchhhHHHHHHH---HHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999994    3445566665544   4555677788887653

>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*

Probab=99.90  E-value=1.2e-23  Score=197.55  Aligned_cols=190  Identities=16%  Similarity=0.175  Sum_probs=149.4

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HH-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PI-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|+++++.        .+.+++  ++ .+++.+|++.+|++|.+|++++++++||+|+++++++++.  +
T Consensus        32 ~~~~G~~~g~~V~~~~~G--------~G~~~aa~~~~~l~~~~~~~~ii~~G~aG~l~~~~~~Gdvvv~~~~~~~d~--~  101 (230)
T 1zos_A           32 TYHTGTIASHEVVLVESG--------IGKVMSAMSVAILADHFQVDALINTGSAGAVAEGIAVGDVVIADKLAYHDV--D  101 (230)
T ss_dssp             EEEEEEETTEEEEEEECC--------SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEESSC--B
T ss_pred             EEEEEEECCEEEEEEECC--------CCHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCccCCEEEEeeeEEcCC--C
Confidence            788999999999988632        233444  33 4457789999999999999999999999999999998875  2


Q ss_pred             CCCCCCCCCCCCCCCCC--CCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHH-HHHc-CCcEEe
Q psy9643         265 NNPLLGVNEDRFGPRFP--PMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNM-LRIC-GVDAVG  339 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~--~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~-~~~~-Gad~Vg  339 (412)
                      .+++ |.   ..| .++  +..+++|+.|++.+.+++++.+++  ++.|++  ++||+|.+.+| .+. ++++ |+++|+
T Consensus       102 ~~~~-g~---~~g-~~p~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~ve  172 (230)
T 1zos_A          102 VTAF-GY---AYG-QMAQQPLYFESDKTFVAQIQESLSQLDQN--WHLGLI--ATGDSFVAGNDKIEAIKSHFPEVLAVE  172 (230)
T ss_dssp             CGGG-TC---CTT-CCTTSCSCEECCHHHHHHHHHTSCTTCCS--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEE
T ss_pred             CCcc-CC---cCC-CCCCCCCcccCCHHHHHHHHHHHHhcCCc--EEEeeE--EECCcccCCHHHHHHHHHhCCCCcEeh
Confidence            3443 11   111 122  234589999999999999888888  999975  68999999887 444 4678 999999


Q ss_pred             CchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       340 Me~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      ||+++++++|+++|+|+++|+.|||++.+    +.   ++++.+.++.++..+.+++.++|+++
T Consensus       173 ME~aa~~~~a~~~~~~~~~ir~IsD~~~~----~~---~~~~~~~~~~aa~~~~~~~~~~l~~l  229 (230)
T 1zos_A          173 MEGAAIAQAAHTLNLPVLVIRAMSDNANH----EA---NIFFDEFIIEAGRRSAQVLLAFLKAL  229 (230)
T ss_dssp             SSHHHHHHHHHHTTCCEEEEEEEEECSST----TH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCEEEEEEeccCCCC----cc---hhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999943    32   34555555666777788899888875

>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A

Probab=99.89  E-value=4.6e-23  Score=194.60  Aligned_cols=183  Identities=16%  Similarity=0.152  Sum_probs=143.0

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      +++.|.++|++|+++++.        ++..++  +++.+..+|++.+|++|.+|++++++++||+|++++++++++   .
T Consensus        47 ~~~~G~~~g~~V~v~~~G--------~G~~~aa~~~~~l~~~~~~~iI~~G~aG~l~~~~~~GDvvv~~~~~~~dg---~  115 (235)
T 1odk_A           47 WGYTGLYKGVPVSVQTTG--------MGTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDG---T  115 (235)
T ss_dssp             CEEEEEETTEEEEEECCC--------SSHHHHHHHHHHHHHTTCCEEEEEEEEEESSTTSCTTCEEEEEEEEEESH---H
T ss_pred             EEEEEEECCEEEEEEecC--------CCHHHHHHHHHHHHHCCCCEEEEEeccccCCCCCCCCCEEEEchhhccCC---C
Confidence            688999999999987632        122333  344444499999999999999999999999999999988765   1


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHH
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHE  345 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pE  345 (412)
                      ++...+     +.   .+..++|+.|++.+.+++++.+++  ++.|++++.+++.+++.++.++++++|+++||||++++
T Consensus       116 ~~~~~~-----~~---~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~  185 (235)
T 1odk_A          116 TRQYLE-----GR---PYAPVPDPEVFRALWRRAEALGYP--HRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASAL  185 (235)
T ss_dssp             HHHHHT-----TC---CCCCCCCHHHHHHHHHHHHHTTCC--EEEEEEEEESCTTTCCHHHHHHHHTTTEEEEESSHHHH
T ss_pred             CccccC-----CC---CCCCcCCHHHHHHHHHHHHHcCCC--eEEEEEEEeCCCCCCCHHHHHHHHHcCCcEEeccHHHH
Confidence            221110     11   123368999999999999999998  99999877766766788888999999999999999999


Q ss_pred             HHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9643         346 VITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSM  395 (412)
Q Consensus       346 a~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~l  395 (412)
                      +++|+++|+|+++|+.|||++.    +.+.++.+++.+..+++.+.+.+.
T Consensus       186 ~~~a~~~gip~~~ir~IsD~~~----~~~~~~~~~~~~~~~~~~~~~l~~  231 (235)
T 1odk_A          186 FLLGRMRGVRTGAILAVSNRIG----DPELAPPEVLQEGVRRMVEVALEA  231 (235)
T ss_dssp             HHHHHHHTCEEEEEEEEEEEC----------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEEEecCcc----cCccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999994    334588889888777776654433

>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*

Probab=99.88  E-value=6.2e-23  Score=193.75  Aligned_cols=182  Identities=16%  Similarity=0.119  Sum_probs=141.0

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH--H-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP--I-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~--i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|+++++..        +..++.  + ++++.+|++.+|++|.+|++++++++||+|++++++++++   
T Consensus        46 ~~~~G~~~g~~V~v~~~G~--------G~~~aa~~~~~l~~~~g~~~iI~~G~aGgl~~~~~~GDvvv~~~~i~~d~---  114 (235)
T 1z34_A           46 QGYTGTYKGKPISVMGHGM--------GLPSICIYAEELYSTYKVKTIIRVGTCGAIDMDIHTRDIVIFTSAGTNSK---  114 (235)
T ss_dssp             CEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHTSCCCEEEEEEEEEECSTTCCTTCEEEEEEEEESCS---
T ss_pred             EEEEEEECCEEEEEEecCC--------CHHHHHHHHHHHHHHcCCCEEEEEEccccCCCCCCCCCEEEEcceeccCC---
Confidence            6788999999999875321        223332  3 5677799999999999999999999999999999988765   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC--CHHHHHHHHHcCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE--TVAELNMLRICGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe--T~AE~~~~~~~Gad~VgMe~  342 (412)
                      .++...+        ..++..++|+.|++.+.+++++.+++  ++.|++  ++||+|.  +.++.++++++|+++||||+
T Consensus       115 ~~~~~~p--------~~~~~~~~d~~L~~~~~~~~~~~~~~--~~~G~~--~s~d~f~~~~~~~~~~~~~~g~~~veME~  182 (235)
T 1z34_A          115 INRIRFM--------DHDYPATASFDVVCALVDAAKELNIP--AKVGKG--FSTDLFYNPQTELAQLMNKFHFLAVEMES  182 (235)
T ss_dssp             HHHHHTT--------TSCCCCBCCHHHHHHHHHHHHHTTCC--CEEEEE--EECSCSSCSCTHHHHHHHHTTCCEEESSH
T ss_pred             ccccccC--------CCCcCccCCHHHHHHHHHHHHHcCCC--eEEEEE--eecCcCcCCcHHHHHHHHHcCceEEechH
Confidence            2221110        11244678999999999999999988  899976  5788886  55677899999999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMV  396 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll  396 (412)
                      ++++++|+++|+|+++|+.|||++.    +++.++.+++.+..+++.+...+.+
T Consensus       183 aa~~~~a~~~gi~~~~i~~IsD~~~----~~~~~~~~~~~~~~~~~~~~al~~~  232 (235)
T 1z34_A          183 AGLFPIADLYGARAGCICTVSDHIL----HHEETTAEERQNSFQNMMKIALEAA  232 (235)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEESS----SCCC-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcEEEEEEEEecCC----CCccCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999994    3455888888887777665544433

>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*

Probab=99.88  E-value=3.9e-23  Score=199.11  Aligned_cols=188  Identities=12%  Similarity=0.140  Sum_probs=141.5

Q ss_pred             CceeEeeCcCccc--ccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceeeeecCCCCccccHHHHH
Q psy9643         146 PKIGIICGSGLST--IADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRV  223 (412)
Q Consensus       146 ~~~GIi~GsGl~~--~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~l  223 (412)
                      .+++|++|++..-  +++.+++....           ...+ ..+++.|.++|++|+++++.      +.......+++.
T Consensus        39 ~~i~Ii~a~~~e~~~l~~~l~~~~~~-----------~~~~-~~~~~~G~~~g~~V~v~~~G------iG~~~aa~~~~~  100 (267)
T 2b94_A           39 TPVVLVVGDPGRVDKVKMLCDSYVDL-----------AYNR-EYKSVECTYKGQKFLCVSHG------VGSAGCAICFEE  100 (267)
T ss_dssp             CSEEEECSSHHHHHHHHHTSSEEEEC-----------C----CEEEEEEEETTEEEEEEEEC------TTCSCSHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHhccceEe-----------eecC-CeEEEEEEECCEEEEEEeCC------CCHHHHHHHHHH
Confidence            5789999876532  22233332211           1111 12688899999999887532      112222334455


Q ss_pred             HHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc
Q psy9643         224 MKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL  302 (412)
Q Consensus       224 l~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~  302 (412)
                      +..+|++.||++|++|+++++ +++||+|++++++++++   .+++..       +  ..+..++|+.|++.+.+++++.
T Consensus       101 L~~~g~~~iI~~G~aGgl~~~~l~~GDvVi~~~~i~~dg---~~~~~~-------p--~~~~~~~d~~L~~~l~~~~~~~  168 (267)
T 2b94_A          101 LMNNGAKVIIRAGSCGSLQPTQMKRGDICICNAAVREDR---VSHLMI-------Y--SDFPAVADFEVYDTLNKVAQEL  168 (267)
T ss_dssp             HHHTTCCEEEEEEEEEESCTTTCCTTCEEEEEEEEEESS---THHHHS-------C--TTSCEECCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCEEEEeccccccCcccCCCCCEEEEhhhcccCC---CCcccc-------C--CCcCCCCCHHHHHHHHHHHHHc
Confidence            558999999999999999999 99999999999998875   222111       1  1234589999999999999999


Q ss_pred             CCCcceeeceEEEEecCccC--C--HHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         303 NMSSIVKEGVYSVIGGPNFE--T--VAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       303 g~~~~~~~Gvy~~~~GP~fe--T--~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      +++  ++.|++  ++||+|.  +  +++.++++++|+++||||+++++++|+++|+||++|+.|||++.
T Consensus       169 ~~~--~~~G~i--~sgd~f~~~~~~~~~~~~~~~~ga~~veME~aa~a~va~~~gip~~~Ir~IsD~~~  233 (267)
T 2b94_A          169 EVP--VFNGIS--LSSDLYYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVKTGGIFIVDGCPL  233 (267)
T ss_dssp             TCC--CEEEEE--EEESSHHHHCCCCTTHHHHHHTTCCEEESSHHHHHHHHHHHTCEEEEEEEEEECGG
T ss_pred             CCC--eEEEEE--eeeCccccCCcchHHHHHHHHcCCeEEeCcHHHHHHHHHHcCCcEEEEEEEEcccc
Confidence            998  899977  4799997  4  45778899999999999999999999999999999999999984

>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A

Probab=99.88  E-value=4.4e-23  Score=194.76  Aligned_cols=180  Identities=12%  Similarity=0.081  Sum_probs=137.6

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      .++.|.++|++|+++++..        +..++  +++.+..+|++.+|++|.+|++++++++||+|++++++++++   .
T Consensus        46 ~~~~G~~~g~~V~v~~~G~--------G~~~aa~~~~~l~~~~~~~iI~~G~aGgl~~~~~~GDvvi~~~~~~~d~---~  114 (236)
T 1je0_A           46 LVYTGKYNGETVSIATHGI--------GGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQG---G  114 (236)
T ss_dssp             CEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEBCCS---H
T ss_pred             EEEEEEECCEEEEEEecCC--------CHhHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEEhhhccCCC---C
Confidence            6889999999999876321        22333  345555599999999999999999999999999999988876   2


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc--CCHHHHHHHHHcCCcEEeCchh
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF--ETVAELNMLRICGVDAVGMSTV  343 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f--eT~AE~~~~~~~Gad~VgMe~~  343 (412)
                      + |.+.     .+..+++..++|+.|++.+.+++++.+++  ++.|+++  +||+|  +++++.++++++|+++||||++
T Consensus       115 ~-~~~~-----~p~~~~~~~~~d~~l~~~~~~~~~~~~~~--~~~G~~~--s~d~f~~~~~~~~~~~~~~g~~~veME~a  184 (236)
T 1je0_A          115 L-FYQY-----LRDNACVASTPDFELTNKLVTSFSKRNLK--YYVGNVF--SSDAFYAEDEEFVKKWSSRGNIAVEMECA  184 (236)
T ss_dssp             H-HHHH-----HSSCCBCCCCCCHHHHHHHHHHHHHTTCC--EEEEEEE--ECSCTTCCCTTHHHHHHTTTEEEEESSHH
T ss_pred             c-cccc-----cCCCCCCCCCCCHHHHHHHHHHHHHcCCC--eEEEEEE--ecCcCccCCHHHHHHHHHcCCeEEeccHH
Confidence            2 1110     01111234578999999999999999998  8999875  67777  6778888999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643         344 HEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPM  391 (412)
Q Consensus       344 pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~  391 (412)
                      +++++|+++|+|+++|+.|||++..   ..+.++++++.+..+++.+.
T Consensus       185 a~~~~a~~~gi~~~~ir~IsD~~~~---~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1je0_A          185 TLFTLSKVKGWKSATVLVVSDNLAK---GGIWITKEELEKSVMDGAKA  229 (236)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEEECC-----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEEEEEccccc---CCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999942   14568888887766665443

>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ...

Probab=99.88  E-value=1.1e-22  Score=194.38  Aligned_cols=185  Identities=15%  Similarity=0.081  Sum_probs=146.5

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HH-HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PI-RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i-~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|.+|+++++..        +..++  ++ ++++.+|++.||++|++|++++++++||+|+++++++..+   
T Consensus        49 ~~~~G~~~g~~V~v~~~G~--------G~~~aa~~~~~l~~~~g~~~iI~~G~aGgl~~~~~~GDvVi~~~~i~d~g---  117 (253)
T 1vhw_A           49 FGYTGTYKGRRISVMGHGM--------GIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK---  117 (253)
T ss_dssp             CEEEEEETTEEEEEECCCS--------SHHHHHHHHHHHHHHHCCCEEEEEEEEEECSTTSCTTCEEEEEEEEESCS---
T ss_pred             EEEEEEECCEEEEEEeCCC--------CHHHHHHHHHHHHHHcCCCEEEEEEeccCCCCCCCCCCEEEEcceEECCC---
Confidence            5788999999999886421        22333  23 5677899999999999999999999999999999884322   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc--CCHHHHHHHHHcCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF--ETVAELNMLRICGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f--eT~AE~~~~~~~Gad~VgMe~  342 (412)
                      .++...+        ..+..+++|+.|++.+.+++++.+++  ++.|+++  +||+|  +++++.++++++|+++||||+
T Consensus       118 ~~~~~~p--------~~~~~~~~d~~L~~~l~~~~~~~~~~--~~~G~i~--s~d~f~~~~~~~~~~~~~~g~~~veME~  185 (253)
T 1vhw_A          118 VNRIRFK--------DHDFAAIADYKMVKAAEEAAKARGID--VKVGNLF--SAELFYTPDPSMFDVMDKYGIVGVEMEA  185 (253)
T ss_dssp             HHHHHTT--------TSBCCCBCCHHHHHHHHHHHHHTTCC--CEEEEEE--ECSCSSCSCTTHHHHHHHTTCCEEESSH
T ss_pred             CcccccC--------CCcccccCCHHHHHHHHHHHHHcCCC--eEEEEEE--EeCccccCcHHHHHHHHHcCCcEEechH
Confidence            1221100        11234678999999999999999998  9999875  67777  566778899999999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRI  399 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~  399 (412)
                      ++++++|+++|+|+++|+.|||++.    +.+.++.+++.+..+++.+.+.+.+.++
T Consensus       186 aa~~~~a~~~gi~~~~I~~IsD~~~----~~~~~~~~e~~~~~~~~~~~ale~~~~~  238 (253)
T 1vhw_A          186 AGIYGVAAEYGAKALAICTVSDHIK----TGEQTTSEERQNTFNEMIEIALDSVLIG  238 (253)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEETT----TCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEEEEccCC----CCccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999994    4567899998888877776665555444

>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A*

Probab=99.88  E-value=1e-22  Score=192.68  Aligned_cols=180  Identities=18%  Similarity=0.142  Sum_probs=138.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      .+++|.++|++|+++++....     ++...+..++++.+|++.||++|++|++++++++||+|+++++++..+.   ++
T Consensus        46 ~~~~G~~~g~~v~v~~~G~G~-----~~aa~~~~~l~~~~g~~~iI~~G~aGgl~~~~~~GDvVi~~~~i~d~g~---~~  117 (235)
T 3uaw_A           46 LGFTGTYKGKRVSVQGTGMGV-----PSISIYVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSNM---NR  117 (235)
T ss_dssp             CEEEEEETTEEEEEECCCSSH-----HHHHHHHHHHHHHHCCCEEEEEEEEEECSTTSCTTCEEEEEEEEESCSH---HH
T ss_pred             EEEEEEECCEEEEEEeCCCCH-----HHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCcEEEEChhhccCCC---Cc
Confidence            578899999999998644321     1111112357778999999999999999999999999999988753321   10


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc--CCHHHHHHHHHcCCcEEeCchhHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF--ETVAELNMLRICGVDAVGMSTVHE  345 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f--eT~AE~~~~~~~Gad~VgMe~~pE  345 (412)
                            ..+.  ..++..++|+.|++.+.+++++.|++  ++.|++  ++||+|  +++++.++++++|+++||||++++
T Consensus       118 ------~~~~--~~~~~~~~d~~L~~~l~~~a~~~g~~--~~~G~~--~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~  185 (235)
T 3uaw_A          118 ------LTFP--GFDFAPAANFDLLKKAYDAGTEKGLH--VRVGNV--LTADVFYRESMDMVKKLGDYGVLAVEMETTAL  185 (235)
T ss_dssp             ------HHST--TCCCCCBCCHHHHHHHHHHHHHHTCC--EEEEEE--EECSCSSCSCCHHHHHHHHTTCCEEESSHHHH
T ss_pred             ------cccC--CCcccccCCHHHHHHHHHHHHHcCCC--eEEEEE--EEcCcCccCCHHHHHHHHHcCCcEEEccHHHH
Confidence                  0011  02334568999999999999999998  999987  478888  677788899999999999999999


Q ss_pred             HHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643         346 VITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPM  391 (412)
Q Consensus       346 a~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~  391 (412)
                      +++|+++|+|+++|++|||++.    .++..+.+|....+.++.+.
T Consensus       186 ~~va~~~gi~~~~i~~ISD~~~----~~e~~~~~e~~~~~~~~~~~  227 (235)
T 3uaw_A          186 YTLAAKYGVNALSVLTVSDHIF----TGEETTSEERQTTFNEMIEI  227 (235)
T ss_dssp             HHHHHHHTCEEEEEEEEEEETT----TCCBCCTGGGHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEEEecccC----CCCcCChHHHHHHHHHHHHH
Confidence            9999999999999999999984    34445666665555555443

>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A*

Probab=99.87  E-value=1.2e-22  Score=192.97  Aligned_cols=180  Identities=16%  Similarity=0.114  Sum_probs=140.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      ..++|.++|++|+++++....     |+...+.-++++.+|++.||++|+||++++++++||+|+++++++..++   ++
T Consensus        55 ~~~tG~~~g~~V~v~~~G~G~-----~saai~~~eLi~~~gv~~iI~~GtaGgl~~~~~~GDvVi~~~~i~~~~~---~~  126 (242)
T 3u40_A           55 VGYTGYYKGVKLSVQAHGMGM-----PSIGIYAYELFNFYGVKRIIRIGSAGAFDESLKLGDIVIGMGACYDSNF---ER  126 (242)
T ss_dssp             CEEEEEETTEEEEEEECCSSH-----HHHHHHHHHHHHHSCCCEEEEEEEEEECSTTCCTTCEEEEEEEEESCSS---SG
T ss_pred             EEEEEEECCEEEEEEeCCCCH-----HHHHHHHHHHHHHcCCCEEEEEEeeeCCCCCCCCCCEEEecceeecCCc---cc
Confidence            578899999999998643211     1221122356678999999999999999999999999999998875542   11


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCcc-CCHHHHHHHHHcCCcEEeCchhHHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF-ETVAELNMLRICGVDAVGMSTVHEV  346 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~f-eT~AE~~~~~~~Gad~VgMe~~pEa  346 (412)
                      .      .+.+  .++..++|+.|++.+.+++++.|++  ++.|+++  ++|.| +++++.++++++|+++||||+++++
T Consensus       127 ~------~~~~--~~~~~~~d~~L~~~l~~~a~~~g~~--~~~G~i~--s~d~fy~~~~~~~~~~~~g~~~veMEsaal~  194 (242)
T 3u40_A          127 Q------YDIP--GKYSCIADFQLCREAVDAAEKLGYR--YKVGNIY--SANYFYDDGDHSGAWKKMGVLAVEMEAAALY  194 (242)
T ss_dssp             G------GTCS--SBCCEECCHHHHHHHHHHHHHTTCC--EEEEEEE--ECSCSSCSSCCCHHHHHTTCCEEESSHHHHH
T ss_pred             c------ccCC--CcccccCCHHHHHHHHHHHHHcCCc--eEEeEEE--EeCCCcCCHHHHHHHHHcCCcEEEchHHHHH
Confidence            0      0100  1234578999999999999999998  9999886  56665 7888888999999999999999999


Q ss_pred             HHHHHcCCcEEEEEeeec-cCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643         347 ITAHHCGMTVTAFSLITN-KCVTDYDDHAEANHEEVIQAGKLRGPM  391 (412)
Q Consensus       347 ~~A~~~Gi~~~~i~~VSd-~a~~~~~~~~~~s~~ev~~~~~~~~~~  391 (412)
                      ++|+++|+|+++|++||| ..    ...+.++.+|..+.+.++.+.
T Consensus       195 ~va~~~gi~~~~i~~ISD~~~----~~~e~~~~~e~~~~~~~~~~~  236 (242)
T 3u40_A          195 MIAARARKQALCMLTISDLCY----GSGEKMTAEERRTKFTQMMEV  236 (242)
T ss_dssp             HHHHHHTCEEEEEEEEEEESS----TTCCBCCHHHHHHTTHHHHHH
T ss_pred             HHHHHcCCCEEEEEEEEcCcc----cCCCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999 65    234578888877777666543

>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1

Probab=99.87  E-value=3e-22  Score=193.03  Aligned_cols=200  Identities=11%  Similarity=0.067  Sum_probs=148.4

Q ss_pred             HHHHHHHHhhhcCCC----CceeEeeCcCcc--cccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecc
Q psy9643         131 IQSIAKFLLDSISIR----PKIGIICGSGLS--TIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG  204 (412)
Q Consensus       131 ~~~~~~~i~~~~~~e----~~~GIi~GsGl~--~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qg  204 (412)
                      .+-+.+|+.-.+...    +++.|++|++..  .+++.+++.         .   .   ||..++.  .++|++|+++++
T Consensus         7 ~~~~~~~~~~h~~~~~~~~~~~vii~g~p~~~~~ia~~~~~~---------~---~---~~~~~~~--~~~g~~V~v~~~   69 (268)
T 1ybf_A            7 QEIVENWLPRYTQRQLIDFEPYILLTNFSHYLHVFAEHYGVP---------I---V---GEHTSMP--NASAEGVTLINF   69 (268)
T ss_dssp             HHHHHHHHHHHSSCCTTTSCSEEEEESCHHHHHHHHHHHTCC---------C---B---TTTSSSC--BCCCSSEEEEEC
T ss_pred             HHHhcCCeeeeeCcChHHCCCEEEEcCCHHHHHHHHHhcccc---------E---E---ccCCcee--eECCeEEEEEEC
Confidence            344555655555543    589999988431  122222111         0   1   3433444  678999888864


Q ss_pred             eeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCc
Q psy9643         205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMN  284 (412)
Q Consensus       205 r~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~  284 (412)
                      ....     |+. .++++++..+|++.||.+|+||++++++++||+|++++++++++   .+++.      ....+   .
T Consensus        70 G~G~-----~~a-a~~~~~l~~~gv~~iI~~GtaGgl~~~i~~GDvVi~~~~i~~d~---~~~~~------~~~~~---p  131 (268)
T 1ybf_A           70 GMGS-----ANA-ATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGEG---TSNDY------LPEEV---P  131 (268)
T ss_dssp             CSCH-----HHH-HHHHHHTTTTCCSEEEEEEEECCSSCTTCTTCEEEEEEEEECSS---TGGGT------SCTTS---C
T ss_pred             CCCH-----HHH-HHHHHHHHHcCCCEEEEEEeeecCCCCCCCCcEEEEhhheecCC---Ccccc------cCCcc---C
Confidence            4321     222 44578889999999999999999999999999999999998776   22221      11122   2


Q ss_pred             ccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeee
Q psy9643         285 KAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLIT  363 (412)
Q Consensus       285 ~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VS  363 (412)
                      .++|++|++.+.+++++++++  ++.|++++.+++.++|++| .++|+++|+++||||+++++++|+++|+|+++|++||
T Consensus       132 ~~~~~~l~~~l~~~a~~~~~~--~~~G~~~s~d~f~~e~~~e~~~~l~~~g~~~veMEsaal~~~a~~~gv~~~~i~~Vs  209 (268)
T 1ybf_A          132 SLPSFSVLRAISSAIQNKGKD--YWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETATLMTVGFANKIPMGALLLIS  209 (268)
T ss_dssp             BCCCHHHHHHHHHHHHTTTCC--EEEEEEEECSCCCCTTCHHHHHHHHHTTCSEEESSHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHcCCC--EEEEEEEEeCCCccCCCHHHHHHHHHcCCeEEecCHHHHHHHHHHcCCCEEEEEEEE
Confidence            367899999999999999998  8999987666666778888 5788889999999999999999999999999999999


Q ss_pred             ccCC
Q psy9643         364 NKCV  367 (412)
Q Consensus       364 d~a~  367 (412)
                      |++.
T Consensus       210 D~~~  213 (268)
T 1ybf_A          210 DRPM  213 (268)
T ss_dssp             SCSS
T ss_pred             cCCC
Confidence            9985

>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A*

Probab=99.86  E-value=2.6e-22  Score=194.02  Aligned_cols=160  Identities=15%  Similarity=0.152  Sum_probs=131.5

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNN  266 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~  266 (412)
                      ..++|.++|++|+++++..      ........++.+..+|++.||++|+||+++++ +++||+|++++++++++   .+
T Consensus        49 ~~~tG~~~G~~V~v~~~Gi------G~psaai~~~eL~~~gv~~iI~~GtaGgL~~~~i~~GDiVI~~~ai~~dg---~~  119 (275)
T 3phc_A           49 KSVECHYKGQKFLCVSHGV------GSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDR---VS  119 (275)
T ss_dssp             EEEEEEETTEEEEEEECCS------SHHHHHHHHHHHHTTTCCEEEEEEEEEESCTTTCCTTCEEEEEEEEEESS---HH
T ss_pred             EEEEEEECCEEEEEEECCC------ChHHHHHHHHHHHHCCCCEEEEeeeecCcccccCCCCcEEEEhheeccCC---cc
Confidence            5788999999999987432      12222223455566999999999999999999 99999999999998765   22


Q ss_pred             CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH--HHHHHHcCCcEEeCchhH
Q psy9643         267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE--LNMLRICGVDAVGMSTVH  344 (412)
Q Consensus       267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE--~~~~~~~Gad~VgMe~~p  344 (412)
                      +..      .+.   .+..++|++|++.+.++++++|++  ++.|++++.++|.+++.++  .++++++|+++||||+++
T Consensus       120 ~~y------~~~---~~p~~~d~~L~~~l~~~a~~~g~~--~~~G~v~s~D~Fy~~~~~~~k~~~~~~~Ga~aVEMEsaa  188 (275)
T 3phc_A          120 HLL------IHG---DFPAVGDFDVYDTLNKCAQELNVP--VFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELAT  188 (275)
T ss_dssp             HHH------SCT---TSCEECCHHHHHHHHHHHHHTTCC--CEEEEEEEESCSSCCSSSCCSHHHHHHTTCCEEESSHHH
T ss_pred             ccc------CCC---CcCCcCCHHHHHHHHHHHHHcCCC--eEEEEEEEeCCCccCchhhHHHHHHHHcCCEEEECcHHH
Confidence            211      111   233578999999999999999998  9999999888888888877  588999999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeeeccCC
Q psy9643         345 EVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       345 Ea~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      ++++|+++|+|+++|++|+|...
T Consensus       189 l~~vA~~~gi~~~~I~~V~~~~~  211 (275)
T 3phc_A          189 LMVIGTLRKVKTGGILIVDGCPF  211 (275)
T ss_dssp             HHHHHHHTTCEEEEEEEEEECGG
T ss_pred             HHHHHHHcCCCEEEEEEEECCcc
Confidence            99999999999999999988753

>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ...

Probab=99.86  E-value=6.1e-22  Score=189.36  Aligned_cols=158  Identities=13%  Similarity=0.226  Sum_probs=128.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      .++.|.++|++|+++++..      .......+++.++.+|++.+|++|.+|++++++++||+|++++++++++   .++
T Consensus        51 ~~~~G~~~g~~V~~~~~G~------G~~~aa~~~~~l~~~g~~~ii~~G~aGgl~~~~~~Gdvvi~~~~i~~dg---~~~  121 (253)
T 3ddo_A           51 TSWRAELDGKAVIVCSTGI------GGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDG---ASL  121 (253)
T ss_dssp             EEEEEEETTEEEEEECCCS------SHHHHHHHHHHHHHTTCCEEEEEEEECCCSTTCCTTCEEEEEEEEEESS---GGG
T ss_pred             EEEEEEECCEEEEEEeCCC------ChHHHHHHHHHHHHcCCCEEEEEEeeccCCCCCCCCeEEEechheeCCC---ccc
Confidence            5689999999999986432      1222233456668999999999999999999999999999999999875   221


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC----------------CHHHHHHHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE----------------TVAELNMLR  331 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe----------------T~AE~~~~~  331 (412)
                      .       +.+  ..+..++|++|++.+.++++++|++  ++.|+++  +||+|.                +++|.++++
T Consensus       122 ~-------y~~--~~~p~~~d~~l~~~l~~~a~~~~~~--~~~G~~~--s~d~F~~~~~r~~~~~~~i~~~~~~~~~~~~  188 (253)
T 3ddo_A          122 H-------FAP--MEFPAVADFACTTALVEAAKSIGAT--THVGVTA--SSDTFYPGQERYDTYSGRVVRRFKGSMEEWQ  188 (253)
T ss_dssp             G-------TSC--TTSCEECCHHHHHHHHHHHHHTTCC--EEEEEEE--EESCSSGGGTCCCSSSCCCCGGGTTHHHHHH
T ss_pred             c-------cCC--CccCCcCCHHHHHHHHHHHHHCCCC--EEEEEEE--EcCcccCCcccccccccchhhhHHHHHHHHH
Confidence            1       111  1233468999999999999999998  9999874  799994                357888999


Q ss_pred             HcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         332 ICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       332 ~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      ++|+++||||+++++++|+++|+|+++|+++++.-.
T Consensus       189 ~~ga~aveME~aa~a~va~~~gi~~~~i~~v~~~R~  224 (253)
T 3ddo_A          189 AMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRT  224 (253)
T ss_dssp             HTTCCEEESSHHHHHHHHHTTTCEEEEEEEECCCTT
T ss_pred             HCCceEEeccHHHHHHHHHHcCCcEEEEEEEEEecc
Confidence            999999999999999999999999999998887753

>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6}

Probab=99.85  E-value=6.7e-22  Score=191.88  Aligned_cols=161  Identities=18%  Similarity=0.279  Sum_probs=129.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      ..++|+++|++|+++++..      .......+++.+..+|++.||++|+||++++++++||+|++++++++++   .++
T Consensus        77 ~~~tG~~~g~~V~v~~~G~------G~~~aa~~~~~L~~~g~~~iI~~G~aGgl~~~~~~GDvVi~~~ai~~dg---~~~  147 (282)
T 3qpb_A           77 VTYTGTLNGEKVSVTSTGI------GGPSASIAMEELKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEG---TSK  147 (282)
T ss_dssp             EEEEEEETTEEEEEECCCS------SHHHHHHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEESS---TGG
T ss_pred             eEEEEEECCEEEEEEeCCC------CHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCcEEEeeeeeecCC---ccc
Confidence            5789999999999886321      1222223456666699999999999999999999999999999998875   232


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEe-----------cCccCCHHHHHHHHHcCCc
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIG-----------GPNFETVAELNMLRICGVD  336 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~-----------GP~feT~AE~~~~~~~Gad  336 (412)
                      +..      .   ..+...+|+.|++.+.++++++|++  ++.|++++.+           ||+|+|++|.++|+++|++
T Consensus       148 ~y~------~---~~~p~~~d~~L~~~l~~~a~~~g~~--~~~G~~~s~D~Fy~q~~~~~~~~~~e~~~~~~~~~~~Ga~  216 (282)
T 3qpb_A          148 EYA------P---IEFPAVADLEVTNALVNAAKKLGYT--SHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTK  216 (282)
T ss_dssp             GTS------C---TTSCEECCHHHHHHHHHHHHHHTCC--EEEEEEEEESCHHHHHCGGGSTTHHHHHHHHHHHHHTTCC
T ss_pred             ccC------C---CccCCCCCHHHHHHHHHHHHHcCCC--EEEEEEEEecceecccccccccccHhHHHHHHHHHHcCCe
Confidence            211      1   1233458999999999999999998  9999887532           4556788888999999999


Q ss_pred             EEeCchhHHHHHHHHcCCcEEE-EEeeeccCCC
Q psy9643         337 AVGMSTVHEVITAHHCGMTVTA-FSLITNKCVT  368 (412)
Q Consensus       337 ~VgMe~~pEa~~A~~~Gi~~~~-i~~VSd~a~~  368 (412)
                      +||||+++++++|+++|+|+++ +++|||.+.+
T Consensus       217 aVEMEsaala~vA~~~gi~~~~il~visn~~~~  249 (282)
T 3qpb_A          217 ASEMESAALFVAASHLGVRCGSDFLVVGNQERN  249 (282)
T ss_dssp             EECSSHHHHHHHHHHHTCEEEEEEEEEEEHHHH
T ss_pred             EEeccHHHHHHHHHHcCCCEEEEEEEEEccccc
Confidence            9999999999999999999999 7799999853

>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii}

Probab=99.83  E-value=7e-21  Score=184.37  Aligned_cols=192  Identities=11%  Similarity=0.129  Sum_probs=140.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNN  266 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~  266 (412)
                      ..+.|.++|++|+++++...      .......++.+..+|++.||.+|+||+++++ +++||+|++++++++++   .+
T Consensus        53 ~~ytG~~~G~~V~v~~~GiG------~psaai~~~eLi~~gv~~iIriGtaGgL~~~~l~~GDiVI~~~ai~~dg---~~  123 (279)
T 3mb8_A           53 RSFRVVYDSQPITVISHGIG------CPGTSIAIEELAYLGAKVIIRAGTCGSLKPKTLKQGDVCVTYAAVNETG---LI  123 (279)
T ss_dssp             EEEEEEETTEEEEEEECCSS------HHHHHHHHHHHHHTTCCEEEEEEEEEESCTTTSCTTCEEEEEEEEECCH---HH
T ss_pred             EEEEEEECCEEEEEEECCCC------HHHHHHHHHHHHHCCCCEEEEeecccCcCcccCCCCCEEEeeeeEcCCC---Cc
Confidence            56789999999999874321      2222223455556999999999999999999 99999999999988765   22


Q ss_pred             CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH--HHHHHHcCCcEEeCchhH
Q psy9643         267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE--LNMLRICGVDAVGMSTVH  344 (412)
Q Consensus       267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE--~~~~~~~Gad~VgMe~~p  344 (412)
                      +..      ..   ..+..++|++|++.+.++++++|++  ++.|++++.+++..++.++  .++++++|++ |+||+++
T Consensus       124 ~~y------~~---~~~p~~~d~~L~~~l~~~a~~~g~~--~~~G~v~S~D~Fy~e~~~~~k~~~~~~~Ga~-VEMEsaa  191 (279)
T 3mb8_A          124 SNI------LP---EGFPCVATPHVYQALMDAAKELGIE--AASGIGVTQDYFYQNGILPSKLEMYSKCCDV-IDMEMSG  191 (279)
T ss_dssp             HHH------SC---TTCCEECCHHHHHHHHHHHHHHTCC--CEEEEEEECSCSCCCCSSCCCHHHHHTTCSE-EESSHHH
T ss_pred             ccc------CC---CccCCcCCHHHHHHHHHHHHHcCCC--eEEEEEEEECCCccCchHhHHHHHHHHcCCE-EecCHHH
Confidence            111      11   1234578999999999999999998  9999988766666677777  6889999999 9999999


Q ss_pred             HHHHHHHcCCcEEEEEeeeccCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         345 EVITAHHCGMTVTAFSLITNKCVTDYDDHAEA-NHEEVIQAGKLRGPMIKSMVTRIVS  401 (412)
Q Consensus       345 Ea~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~-s~~ev~~~~~~~~~~~~~ll~~~i~  401 (412)
                      ++++|+.+|+|+++|++|||..... ...... +.+.+.+...++.....+.+..+++
T Consensus       192 la~vA~~~gv~~~~I~~VSd~~~~~-~~~~~~~~~~~~~~~~~~~i~ialea~~~L~~  248 (279)
T 3mb8_A          192 VLGLCQARGIATCGILAVDGSPLQW-DEGDYDATGVKATTGKENMVKITLKACANLRR  248 (279)
T ss_dssp             HHHHHHHTTCEEEEEEEECBCGGGG-GGTCBCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEEEEECCcccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876321 111112 2233444444444444555554444

>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A

Probab=99.77  E-value=9.4e-19  Score=180.12  Aligned_cols=188  Identities=9%  Similarity=0.058  Sum_probs=134.0

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      .++.|.++|+.|+++++.        ++.+++  .++.+..+|++.||.+|+||++++++++||+|++++++++++.  .
T Consensus       262 ~~~~G~~~G~~VvVv~tG--------mG~~nAAi~~~eL~~~gvk~II~vGtAGgL~~di~lGDVVIa~~ai~~Dg~--~  331 (484)
T 1t8s_A          262 AWHLITADGQGITLVNIG--------VGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHV--L  331 (484)
T ss_dssp             EEEEEETTSCCEEEEECC--------SSHHHHHHHHHHHGGGCCSEEEECCEEEECSTTCCTTCEEEEEEEEEECCT--T
T ss_pred             eEEEEEECCEEEEEEeCC--------CChHHHHHHHHHHHHcCCCEEEEEEEeeccCCCCcCCEEEEEeeEEECCCC--c
Confidence            789999999999987532        223444  4566688999999999999999999999999999999987751  2


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH--------cCCCcceeeceEEEEecCccC----CHHHHHHHHHc
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD--------LNMSSIVKEGVYSVIGGPNFE----TVAELNMLRIC  333 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~--------~g~~~~~~~Gvy~~~~GP~fe----T~AE~~~~~~~  333 (412)
                      +.+        ++..  +..+.+..+...+.+++++        ++++  ++.|++  ++||+|.    ++++.+.++.+
T Consensus       332 ~~y--------~~~~--~p~pa~~~l~~~L~~aA~~~~~~~g~~lg~~--v~~G~i--~SgD~Fy~E~r~~~~~~~~~~~  397 (484)
T 1t8s_A          332 DAV--------LPPD--IPIPSIAEVQRALYDATKLVSGRPGEEVKQR--LRTGTV--VTTDDRNWELRYSASALRFNLS  397 (484)
T ss_dssp             TTT--------SCTT--SCCCCCHHHHHHHHHHHHHHSSCCGGGGGGT--EEEEEE--EEESCTTGGGGHHHHHHHHHHH
T ss_pred             ccc--------cCCC--CCCCCCHHHHHHHHHHHHHHhhhcccccCCc--eEEEEE--EEcCccccccCCHHHHHHHHhc
Confidence            222        1111  1236677888888887776        3666  889987  4799993    35667788889


Q ss_pred             CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9643         334 GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI  403 (412)
Q Consensus       334 Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l  403 (412)
                      |+++|+||+++++++|+++|+|+++|++|||++.+. ....+.+.+++.+   ++.+++.++..+.++.|
T Consensus       398 GalaVEMEsAAla~vA~~~gvp~l~Ir~VSD~a~~~-e~~~~~~~~~~~~---~a~~~ai~iaLeai~~L  463 (484)
T 1t8s_A          398 RAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHG-EIKLPGQANRFYE---GAISEHLQIGIRAIDLL  463 (484)
T ss_dssp             TEEEEESSHHHHHHHHHHTTCCEEEEEEEEECTTSS-CCC-------------CHHHHHHHHHHHHHHHH
T ss_pred             CCeEEeccHHHHHHHHHHcCCCEEEEEEEEecCCcc-cccccccHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999642 1222345555433   33444455555555555

>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei}

Probab=99.56  E-value=5.7e-15  Score=146.92  Aligned_cols=168  Identities=10%  Similarity=0.069  Sum_probs=120.3

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHH--c-------------------------CCCEEEEEeccCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL--V-------------------------GVTHLLATNAAGG  240 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~--l-------------------------Gv~~II~~n~~G~  240 (412)
                      ..++|+++|++|.++.+..-.     |+...+.-.|+..  +                         |++.||.+|+||+
T Consensus        77 ~~~tG~ykG~~Vsv~stGmG~-----psaaI~~~ELi~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~iIrvGT~Gg  151 (349)
T 3bje_A           77 RFATGTYKGTPVTVISTGMGV-----DNIEIVLNEIHALKEYDMERGQWRHRKGDADAPSAGPFFDPSTMKIIRLGTCGS  151 (349)
T ss_dssp             EEEEEEETTEEEEEEECCSSH-----HHHHHHHHHHHHHHHEETTTTEECBCTTCTTSCTTCCBCCGGGCEEEEEEEEEE
T ss_pred             EEEEEEECCEEEEEEECCCCH-----HHHHHHHHHHHHHhhcccccccccccccccccccccccccCCCcEEEEeecccC
Confidence            578899999999998643321     1211112234443  3                         6999999999999


Q ss_pred             CCCCCCCccHHHHHHHHhhccCCCCCCCCCC----------------CCCCCCCCCCCCcccccHHHHHHHHHHHHHcC-
Q psy9643         241 LNPDYEVGDIMIIKDHINLMGFAGNNPLLGV----------------NEDRFGPRFPPMNKAYNKQLRAATLDIARDLN-  303 (412)
Q Consensus       241 l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~----------------~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g-  303 (412)
                      +++++++||+|+.+..+++++.  .+++...                .-..|+. ..++..++|+.|.+.+.+++++.+ 
T Consensus       152 l~~~l~vGdvVI~~~ai~~Dg~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~ad~~L~~~l~~aa~~~~~  228 (349)
T 3bje_A          152 PAESVPPLALAVTRHAIGMDNT--SLYYSAGTRETSKDQQEIRRIVREQTGLRA-IDIYTSMAHPNITKSICAACDAHNA  228 (349)
T ss_dssp             CCTTSCTTCEEEEEEEEECSCG--GGGGTTTTSCCCHHHHHHHHHHHHHSGGGG-SCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeeeEeccCc--ccccccccccccccchhhhcccccccccCC-CCcccCcCCHHHHHHHHHHHHHcCC
Confidence            9999999999999988877762  1222211                0000000 113445789999999999999887 


Q ss_pred             --------CCcceeeceEEEEecCccC---------------CHHHHHHHH---------HcCCcEEeCchhHHHHHHHH
Q psy9643         304 --------MSSIVKEGVYSVIGGPNFE---------------TVAELNMLR---------ICGVDAVGMSTVHEVITAHH  351 (412)
Q Consensus       304 --------~~~~~~~Gvy~~~~GP~fe---------------T~AE~~~~~---------~~Gad~VgMe~~pEa~~A~~  351 (412)
                              .+  ++.|..+  +++.|-               ++++.+.++         ++|+.+||||+++++++|+.
T Consensus       229 ~~~~~~~~~~--~~~G~t~--S~D~Fy~~q~r~~grf~~~~~~~~~~~kl~~~~~~~~~~~~gv~~vEMEsaal~~la~~  304 (349)
T 3bje_A          229 ATGSEADKQQ--YVIGTTA--TASGFYGCQGRRVGRFMKHLTVPNMVEELGSLKFNLSNGVEVVTNIEMETSAICYLSDM  304 (349)
T ss_dssp             TCCCGGGCCC--EEEEEEE--ECSSSSGGGTCCCGGGGGGCSSTTHHHHHHHCCEEETTEEECEEEEESSHHHHHHHHHH
T ss_pred             cccccccccc--EEEEEEE--ECCccccCCcccccccccccccHHHHHHHHHhhhcchhhhcCcEEEECcHHHHHHHHHH
Confidence                    77  8899664  565543               334445554         67999999999999999999


Q ss_pred             cCCcEEEEEeeeccCC
Q psy9643         352 CGMTVTAFSLITNKCV  367 (412)
Q Consensus       352 ~Gi~~~~i~~VSd~a~  367 (412)
                      +|+|+++|++|||...
T Consensus       305 ~g~~a~~i~~Vsdn~~  320 (349)
T 3bje_A          305 LGYQAGAACVVVSKRV  320 (349)
T ss_dssp             HTCEEEEEEEEEEESS
T ss_pred             cCCCEEEEEEEEccCC
Confidence            9999999999999884

>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A

Probab=99.56  E-value=3.3e-15  Score=147.51  Aligned_cols=186  Identities=14%  Similarity=0.186  Sum_probs=128.5

Q ss_pred             eeCCeEEEEecceeeeecCCCCccccHHHHHHHH---cCCC--EEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         193 LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKL---VGVT--HLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       193 ~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~---lGv~--~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      +++|++|+++.+....     |+...+.-.|+..   +|++  .||.+|+||++  ++++||+|+.+..++..+    ++
T Consensus       115 ~ykG~~Vsv~stGIG~-----psaaI~~~ELi~~~~~~gv~~~~iIriGtaGgl--~l~vGDvVIa~~av~~d~----t~  183 (328)
T 3euf_A          115 MYKVGPVLSVSHGMGI-----PSISIMLHELIKLLYYARCSNVTIIRIGTSGGI--GLEPGTVVITEQAVDTCF----KA  183 (328)
T ss_dssp             EEEETTEEEEECCSSH-----HHHHHHHHHHHHHHHHTTCBSCEEEEEEEEEES--SSCTTCEEEEEEEECTTS----CS
T ss_pred             EECCEEEEEEECCCCH-----HHHHHHHHHHHHhhhhcCCCccEEEEEeeecCc--CCcCCcEEEecceecCCC----cc
Confidence            5678888887644322     2322233355555   6999  99999999999  699999999988775443    11


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc-CCCcceeeceEEEEecCccCCHH-----------------HHHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL-NMSSIVKEGVYSVIGGPNFETVA-----------------ELNM  329 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~-g~~~~~~~Gvy~~~~GP~feT~A-----------------E~~~  329 (412)
                      ....  ...|. ...+....|+.|.+.+.++++++ +++  ++.|..  .++++|-...                 ..+.
T Consensus       184 ~~~~--~~~g~-~~~~p~~aD~~L~~~l~~aa~~~~~~~--~~~G~~--~S~D~Fy~~q~r~~~~~~~~~~~~k~~~~~~  256 (328)
T 3euf_A          184 EFEQ--IVLGK-RVIRKTDLNKKLVQELLLCSAELSEFT--TVVGNT--MCTLDFYEGQGRLDGALCSYTEKDKQAYLEA  256 (328)
T ss_dssp             EEEE--EETTE-EEEEECCCCHHHHHHHHHHHHHHCSSC--EEEEEE--EECSCSSGGGTCSCSSBCCSCHHHHHHHHHH
T ss_pred             chhh--hhcCC-CCccCCCCCHHHHHHHHHHHHhccCCC--eEEEEe--eccCccccCccccccccccchhhhHHHHHHH
Confidence            0000  00010 01122457999999999999998 888  999965  5788885431                 1334


Q ss_pred             HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY  402 (412)
Q Consensus       330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~  402 (412)
                      ++++|+.+||||+++.+++|+.+|+|+++|++|+|...   .+++..+++++++.+.+..   .++|.++|++
T Consensus       257 ~~~~gv~avEMEsAAla~va~~~gv~a~~I~~isdnr~---~ge~~~~~~e~l~~~~~~~---~~~v~~~ik~  323 (328)
T 3euf_A          257 AYAAGVRNIEMESSVFAAMCSACGLQAAVVCVTLLNRL---EGDQISSPRNVLSEYQQRP---QRLVSYFIKK  323 (328)
T ss_dssp             HHHTTEEEEESSHHHHHHHHHHTTCEEEEEEEEEEETT---SCSSCCSCHHHHHHHHTHH---HHHHHHHHHH
T ss_pred             HHHcCCEEEehHHHHHHHHHHHcCCcEEEEEEEEcccc---CCccCCCcHHHHHHHHHHH---HHHHHHHHHH
Confidence            66789999999999999999999999999999998774   2345566667666554443   3455555554

>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A

Probab=99.55  E-value=4.2e-15  Score=145.02  Aligned_cols=186  Identities=13%  Similarity=0.182  Sum_probs=129.3

Q ss_pred             eeCCeEEEEecceeeeecCCCCccccHHHHHHHHc-----CCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         193 LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLV-----GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       193 ~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~l-----Gv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      .++|++|+++++....     |+...+.-.|++.+     +++.||.+|+||+++  +++||+|+.+..++. .+  ...
T Consensus        86 ~ykG~~Vsv~~tGiG~-----psaaI~~~ELi~~~~~~~~~~~~iIriGtaGgl~--l~vGDvVIa~~av~~-~~--~~~  155 (297)
T 3p0f_A           86 MYKTGPVLAISHGMGI-----PSISIMLHELIKLLHHARCCDVTIIRIGTSGGIG--IAPGTVVITDIAVDS-FF--KPR  155 (297)
T ss_dssp             EEEETTEEEEECCSSH-----HHHHHHHHHHHHHHHHTTCBSCEEEEEEEEEESS--SCTTCEEEEEEEECT-TS--CSE
T ss_pred             eECCeEEEEEECCCCH-----HHHHHHHHHHHHhccccccCcceEEEEEeecccc--ccCCcEEeechhhhc-cc--ccc
Confidence            3567888887644322     23222333555544     256999999999999  999999998876631 11  000


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHc-CCCcceeeceEEEEecCccCCHH-----------------HHHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL-NMSSIVKEGVYSVIGGPNFETVA-----------------ELNM  329 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~-g~~~~~~~Gvy~~~~GP~feT~A-----------------E~~~  329 (412)
                      +.+.   ..+. ........|+.|.+.+.++++++ +++  ++.|..  .++++|-...                 ..+.
T Consensus       156 ~~~~---~~~~-~~~~~~~ad~~L~~~l~~aa~~~~~~~--~~~G~~--~S~D~Fy~~q~r~~~~~~~~~~~~k~~~~~~  227 (297)
T 3p0f_A          156 FEQV---ILDN-IVTRSTELDKELSEELFNCSKEIPNFP--TLVGHT--MCTYDFYEGQGRLDGALCSFSREKKLDYLKR  227 (297)
T ss_dssp             EEEE---ETTE-EEEEECBCCHHHHHHHHHHHHTSTTCC--EEEEEE--EECSCSSGGGTCSSSSCCCSCHHHHHHHHHH
T ss_pred             cccc---ccCc-ccccccCCCHHHHHHHHHHHHhcCCCC--eEEEEE--EECCccccCCcccccccccchhhhHHHHHHH
Confidence            0000   0000 01123457999999999999998 888  999965  5788885321                 2345


Q ss_pred             HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY  402 (412)
Q Consensus       330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~  402 (412)
                      |+.+|+.+||||+++.+++|+.+|+|+++|++|+|...   .+++..+++++++.+.+++.   +++.++|++
T Consensus       228 ~~~~gv~avEMEsAAl~~va~~~gv~a~~i~~isdnr~---~~~~~~~~~~~~~~~~~~~~---~lv~~~i~~  294 (297)
T 3p0f_A          228 AFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRL---DCDQINLPHDVLVEYQQRPQ---LLISNFIRR  294 (297)
T ss_dssp             HHHHTEEEEESSHHHHHHHHHHTTCEEEEEEEEEEETT---TCSSCCCCHHHHHHHHTHHH---HHHHHHHHH
T ss_pred             HHHcCcEEEehHHHHHHHHHHHcCCcEEEEEEEEcCcc---CCCcccChHHHHHHHHHHHH---HHHHHHHHH
Confidence            67789999999999999999999999999999999874   34566788898888777654   456666654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.53  E-value=1.4e-15  Score=160.25  Aligned_cols=120  Identities=21%  Similarity=0.290  Sum_probs=71.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH---HHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS---IAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF  169 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~---~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~  169 (412)
                      .+||+||||+|||||||+.+|   |+. |.+.  ....++.   .....+|.++.|++||||+-|..          ..+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~l---L~~tG~i~--~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~----------~~~   95 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKL---LLFGGAIQ--MAGSVKARKAARHATSDWMAMERERGISVTTSV----------MQF   95 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHH---HHHTTCHH--HHHHHHHC--------------------CTTTE----------EEE
T ss_pred             cceEEEEeCCCCCHHHHHHHH---HHhcCccc--ccceeecCccccccccCChHHHHHCCCcEeece----------EEE
Confidence            789999999999999999999   665 4332  1233332   22457899999999999997754          344


Q ss_pred             ecCCCCCccccCCCCCce---eE--EEEeeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEec
Q psy9643         170 PYDTIPYFPVSTVPGHKG---QL--VFGLINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNA  237 (412)
Q Consensus       170 ~~~~~~~~~i~d~pGH~~---~l--~~G~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~  237 (412)
                      .|.+ ..++++|||||.|   ++  ....++|+-+|+-       |++..+             +.+...|++.|+++||
T Consensus        96 ~~~~-~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-------------~~a~~~~lp~i~fINK  161 (548)
T 3vqt_A           96 PYRD-RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-------------DVCRMRATPVMTFVNK  161 (548)
T ss_dssp             EETT-EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-------------HHHHHTTCCEEEEEEC
T ss_pred             EECC-EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-------------HHHHHhCCceEEEEec
Confidence            5554 2579999999987   11  1123556655553       444444             7899999999999999


Q ss_pred             cCCCC
Q psy9643         238 AGGLN  242 (412)
Q Consensus       238 ~G~l~  242 (412)
                      +|-.+
T Consensus       162 ~Dr~~  166 (548)
T 3vqt_A          162 MDREA  166 (548)
T ss_dssp             TTSCC
T ss_pred             ccchh
Confidence            98654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.48  E-value=5.5e-16  Score=166.13  Aligned_cols=121  Identities=23%  Similarity=0.445  Sum_probs=83.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+||||||||||||+++|   |+. |.+...  .+++. ....+|..+.|++||||+.|....          +.|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~L---L~~~G~i~~~--g~v~~-g~~~~D~~~~EreRGITI~s~~~~----------~~~~   65 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESL---LYNSGAITEL--GSVDK-GTTRTDNTLLERQRGITIQTGITS----------FQWE   65 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHH---HHHHTCCSSC--SSCCC-SCCSTTCSTTHHHHSSCSSCCCCC----------CBCS
T ss_pred             eeEEEEEcCCCCCHHHHHHHH---HHHcCCCccc--ccccc-CCcccCCcHHHHhCCCcEEeeeEE----------EEEC
Confidence            589999999999999999999   554 433211  01111 112478888999999999775543          3444


Q ss_pred             CCCCccccCCCCCce---eEEEE--eeCCeEEEE-------ecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         173 TIPYFPVSTVPGHKG---QLVFG--LINGIPIMC-------MQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~-------~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                      + ..++++|||||.|   ++..+  .++|+-+|+       .||+.++             +.+...|++.|+++||+|.
T Consensus        66 ~-~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-------------~~a~~~~lp~i~~INKmDr  131 (638)
T 3j25_A           66 N-TKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-------------HALRKMGIPTIFFINKIDQ  131 (638)
T ss_dssp             S-CBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-------------HHHHHHTCSCEECCEECCS
T ss_pred             C-EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-------------HHHHHcCCCeEEEEecccc
Confidence            3 3589999999987   22222  234444443       2556555             8999999999999999997


Q ss_pred             CCCC
Q psy9643         241 LNPD  244 (412)
Q Consensus       241 l~~~  244 (412)
                      ...+
T Consensus       132 ~~a~  135 (638)
T 3j25_A          132 NGID  135 (638)
T ss_dssp             SSCC
T ss_pred             ccCC
Confidence            5544

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.44  E-value=6e-14  Score=143.96  Aligned_cols=148  Identities=23%  Similarity=0.352  Sum_probs=92.3

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      ..+|+++||+++||+|||||||+++|   ++. +.+.....+++++          .++|++|+.+.++++||++..+..
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~L---l~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~   88 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQI---MYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA   88 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHH---HHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE
Confidence            45688999999999999999999999   565 5555555444432          247899999999999999966543


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeeec-CCCC-ccccHHHHHHHHcCCCE
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYYE-GYPL-WKCAMPIRVMKLVGVTH  231 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~ye-g~~~-~~v~~~i~ll~~lGv~~  231 (412)
                      .+          .+. ...|.++|+|||.+   ++..|.... ..++++.......| |... .+....+.+++.+|+++
T Consensus        89 ~~----------~~~-~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~  157 (439)
T 3j2k_7           89 YF----------ETE-KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH  157 (439)
T ss_pred             EE----------ecC-CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence            22          222 23678999999976   444443221 12222211110000 0000 01111237888999995


Q ss_pred             -EEEEeccCCCCCCCCCccH
Q psy9643         232 -LLATNAAGGLNPDYEVGDI  250 (412)
Q Consensus       232 -II~~n~~G~l~~~~~~Gd~  250 (412)
                       |+++||+|....++....+
T Consensus       158 iIvviNK~Dl~~~~~~~~~~  177 (439)
T 3j2k_7          158 LIVLINKMDDPTVNWSNERY  177 (439)
T ss_pred             EEEEeecCCCcccchHHHHH
Confidence             5679999986655444333

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.43  E-value=2e-14  Score=155.86  Aligned_cols=128  Identities=22%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+||||||||||||+++|   |+. |.+..  ..+++.. .-.+|..+.|++||||+-|..-.          +.|.
T Consensus        13 IRNi~IiaHvd~GKTTL~d~L---L~~~g~i~~--~g~v~~~-~~~~D~~~~E~eRGITI~s~~~s----------~~~~   76 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERV---LFYTGVNHK--LGEVHDG-AATTDWMVQEQERGITITSAAVT----------TFWK   76 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHH---HHHHHHHHH--C-------------------------CCEEE----------EEEC
T ss_pred             CeEEEEEcCCCCCHHHHHHHH---HHhcCCCCc--CceecCC-CccCCChHHHHHcCCeEEeeeEE----------EEec
Confidence            689999999999999999999   655 32211  1122222 23488889999999999774433          3332


Q ss_pred             C------CCCccccCCCCCce---eEE--EEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         173 T------IPYFPVSTVPGHKG---QLV--FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       173 ~------~~~~~i~d~pGH~~---~l~--~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                      .      -..++++|+|||.|   +..  .-.++|+-+|+-     +-||..+++. ...+.+...|++.|+++||+|..
T Consensus        77 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVD-----aveGV~~qT~-~v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           77 GSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFC-----GTSGVEPQSE-TVWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEE-----TTTCSCHHHH-HHHHHHHHHTCCEEEEEECSSST
T ss_pred             cCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEE-----CCCCCchhHH-HHHHHHHHcCCCeEEEEcccccc
Confidence            1      12468999999987   111  113455555542     1122222111 12378889999999999999875


Q ss_pred             CC
Q psy9643         242 NP  243 (412)
Q Consensus       242 ~~  243 (412)
                      ..
T Consensus       151 ~a  152 (709)
T 4fn5_A          151 GA  152 (709)
T ss_dssp             TC
T ss_pred             Cc
Confidence            43

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.34  E-value=6.5e-13  Score=137.29  Aligned_cols=142  Identities=27%  Similarity=0.385  Sum_probs=64.6

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcccc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLSTI  159 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~~~  159 (412)
                      +|+++||+++||+|||||||+++|   ++. +.......+++.+.          .+|++|..+.|+++|+|++.+...+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~L---l~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~  116 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNI---LFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF  116 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHH---HHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHH---HHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence            477999999999999999999999   543 44444433333322          3688999999999999998765432


Q ss_pred             cccccCceeeecCCCCCccccCCCCCce---eEEEEeeCC-eEEEEecceeeee-cCCCC-ccccHHHHHHHHcCCC-EE
Q psy9643         160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLING-IPIMCMQGRFHYY-EGYPL-WKCAMPIRVMKLVGVT-HL  232 (412)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g-~~vv~~qgr~H~y-eg~~~-~~v~~~i~ll~~lGv~-~I  232 (412)
                                .+. ...+.++|+|||.+   ++..|.... ..++++......+ +++.. .+....+.+++.+|++ .|
T Consensus       117 ----------~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~ii  185 (467)
T 1r5b_A          117 ----------ETE-HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLV  185 (467)
T ss_dssp             ----------ECS-SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEE
T ss_pred             ----------ecC-CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEE
Confidence                      222 23578999999976   455553221 2222222111000 01110 1111133677889998 56


Q ss_pred             EEEeccCCCCCCCC
Q psy9643         233 LATNAAGGLNPDYE  246 (412)
Q Consensus       233 I~~n~~G~l~~~~~  246 (412)
                      +++||+|..+.++.
T Consensus       186 vviNK~Dl~~~~~~  199 (467)
T 1r5b_A          186 VVINKMDEPSVQWS  199 (467)
T ss_dssp             EEEECTTSTTCSSC
T ss_pred             EEEECccCCCcccc
Confidence            77999998654443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.22  E-value=1.6e-12  Score=138.20  Aligned_cols=139  Identities=20%  Similarity=0.375  Sum_probs=58.2

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      .++|+++||+++||+|||||||+++|   ++. +.+....+.++++          ..+|++|.+..|+++|||+..+..
T Consensus       172 ~~~k~~~~I~iiG~~d~GKSTLi~~L---l~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~  248 (592)
T 3mca_A          172 SNPKPVVHLVVTGHVDSGKSTMLGRI---MFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST  248 (592)
T ss_dssp             SCCCCEEEEEEECCSSSTHHHHHHHH---HHHHHCC--------------------------------------------
T ss_pred             ccCCCccEEEEEcCCCCCHHHHHHHH---HHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE
Confidence            45788999999999999999999999   443 3333332222221          237899999999999999977654


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEee--CCeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCC
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVT  230 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~  230 (412)
                      .+          .+. -..+.++|+|||.+   ++..|..  ++.-+ ++......+| |.... .....+.++..+|++
T Consensus       249 ~~----------~~~-~~~i~iiDTPGh~~f~~~~~~~~~~aD~alL-VVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip  316 (592)
T 3mca_A          249 TF----------ESD-KKIYEIGDAPGHRDFISGMIAGASSADFAVL-VVDSSQNNFERGFLENGQTREHAYLLRALGIS  316 (592)
T ss_dssp             ---------------------CCEEESSSEEEEECCC-------CCS-EEEEEECCSSTTSCSCSSHHHHHHHHHHSSCC
T ss_pred             EE----------EeC-CeEEEEEECCChHHHHHHHHHHHhhCCEEEE-EEECCCCccccccccchHHHHHHHHHHHcCCC
Confidence            33          111 23578999999975   2333321  12222 2221111111 22111 112234788899998


Q ss_pred             E-EEEEeccCCCC
Q psy9643         231 H-LLATNAAGGLN  242 (412)
Q Consensus       231 ~-II~~n~~G~l~  242 (412)
                      + |+++||++.++
T Consensus       317 ~iIvviNKiDl~~  329 (592)
T 3mca_A          317 EIVVSVNKLDLMS  329 (592)
T ss_dssp             CEEEEEECGGGGT
T ss_pred             eEEEEEecccccc
Confidence            4 55799999765

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.21  E-value=1.8e-12  Score=133.73  Aligned_cols=140  Identities=24%  Similarity=0.357  Sum_probs=85.2

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      .++|+++||+++||+|||||||+++|   ++. +..+.+...+++..          ++|++|+...|+++||+++.+..
T Consensus         2 ~~~~~~~~i~iiG~~~~GKSTLi~~L---l~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~   78 (458)
T 1f60_A            2 GKEKSHINVVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW   78 (458)
T ss_dssp             CCCCEEEEEEEEECTTSCHHHHHHHH---HHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE
T ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHH---HHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE
Confidence            45788999999999999999999999   444 44554444444332          36788888889999999977654


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCE
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTH  231 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~  231 (412)
                      .+          .+. ...+.++|+|||.+   ++..+... ...++++.......+ ++... +....+.+++.+|++.
T Consensus        79 ~~----------~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~  147 (458)
T 1f60_A           79 KF----------ETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQ  147 (458)
T ss_dssp             EE----------ECS-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCE
T ss_pred             EE----------ecC-CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCe
Confidence            32          222 22478899999976   33333222 122222211100000 00000 1111236778899985


Q ss_pred             -EEEEeccCCCC
Q psy9643         232 -LLATNAAGGLN  242 (412)
Q Consensus       232 -II~~n~~G~l~  242 (412)
                       |+++||+|..+
T Consensus       148 iivviNK~Dl~~  159 (458)
T 1f60_A          148 LIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEECGGGGT
T ss_pred             EEEEEEcccccc
Confidence             55699999763

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.17  E-value=9.3e-12  Score=127.40  Aligned_cols=142  Identities=27%  Similarity=0.480  Sum_probs=75.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCcccc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTI  159 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~  159 (412)
                      +|+++||+++||+|||||||+++|   ++. +..+.+...+++.          ..+|++|..+.|+++|++++.+...+
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~L---l~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~   79 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRL---LMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF   79 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHH---HHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHH---HHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE
Confidence            577999999999999999999999   544 4444443333322          13578999999999999997765332


Q ss_pred             cccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCC-ccccHHHHHHHHcCCCE-E
Q psy9643         160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPL-WKCAMPIRVMKLVGVTH-L  232 (412)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~-~~v~~~i~ll~~lGv~~-I  232 (412)
                                .+. ...+.++|+|||.+   ++..+... ...++++......+| +..+ .+......+++.+|++. |
T Consensus        80 ----------~~~-~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~ii  148 (435)
T 1jny_A           80 ----------ETK-KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLI  148 (435)
T ss_dssp             ----------ECS-SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCE
T ss_pred             ----------ecC-CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEE
Confidence                      222 23578999999976   33333211 122223221111111 0000 11111236778899864 5


Q ss_pred             EEEeccCCCCCCCC
Q psy9643         233 LATNAAGGLNPDYE  246 (412)
Q Consensus       233 I~~n~~G~l~~~~~  246 (412)
                      +++||+|..++++.
T Consensus       149 vviNK~Dl~~~~~~  162 (435)
T 1jny_A          149 VAVNKMDLTEPPYD  162 (435)
T ss_dssp             EEEECGGGSSSTTC
T ss_pred             EEEEcccCCCcccc
Confidence            67999998775543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.07  E-value=2.6e-11  Score=125.63  Aligned_cols=139  Identities=19%  Similarity=0.382  Sum_probs=72.1

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHH----------HHHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQ----------SIAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~----------~~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      .++|+++||+++||+|+|||||+++|+   +. +.+......+++          ...+|++|.+..++++||++..+..
T Consensus        28 ~~~k~~~ki~iiG~~~~GKSTLi~~Ll---~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~  104 (483)
T 3p26_A           28 KSALPHLSFVVLGHVDAGKSTLMGRLL---YDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS  104 (483)
T ss_dssp             HHSCCEEEEEEESCGGGTHHHHHHHHH---HHTTSSCHHHHHHHCC------------------------CCSSCCCCEE
T ss_pred             hcCCCceEEEEECCCCCCHHHHHHHHH---HhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeE
Confidence            347889999999999999999999994   43 444443333321          2247889999999999999966543


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE--EEEecceee-eecCCCCc-cccHHHHHHHHcCCC
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP--IMCMQGRFH-YYEGYPLW-KCAMPIRVMKLVGVT  230 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~qgr~H-~yeg~~~~-~v~~~i~ll~~lGv~  230 (412)
                      .+          .+ +...+.++|+|||.+   ++..+. .+..  ++++..... ..++.... .......+++.+|++
T Consensus       105 ~~----------~~-~~~~~~iiDTPG~~~f~~~~~~~~-~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~  172 (483)
T 3p26_A          105 HF----------ST-HRANFTIVDAPGHRDFVPNAIMGI-SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH  172 (483)
T ss_dssp             EE----------EC-SSCEEEEECCCCCGGGHHHHHHHH-TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCC
T ss_pred             EE----------ec-CCceEEEEECCCcHHHHHHHHHhh-hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCC
Confidence            32          22 223578999999975   222222 2222  222211110 11111111 111133678889987


Q ss_pred             -EEEEEeccCCCC
Q psy9643         231 -HLLATNAAGGLN  242 (412)
Q Consensus       231 -~II~~n~~G~l~  242 (412)
                       .|++.||+|..+
T Consensus       173 ~iIvviNK~Dl~~  185 (483)
T 3p26_A          173 NLIIAMNKMDNVD  185 (483)
T ss_dssp             CEEEEEECGGGGT
T ss_pred             cEEEEEECcCccc
Confidence             455699999765

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.06  E-value=2.1e-11  Score=123.21  Aligned_cols=118  Identities=36%  Similarity=0.496  Sum_probs=75.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      |+++||+++||+|||||||+++|++...+ |.....        ..+.+|.+..|+++|+|++.+.            ..
T Consensus         1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~--------~~~~~d~~~~e~~~giTi~~~~------------~~   60 (397)
T 1d2e_A            1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFK--------KYEEIDNAPEERARGITINAAH------------VE   60 (397)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCC--------CHHHHHSCCEEEETTEEEECEE------------EE
T ss_pred             CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccc--------hhhhhhcCHHHHhcCcEEEeee------------EE
Confidence            67899999999999999999999653222 111000        0124677788899999996533            22


Q ss_pred             cC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE-EEEEe
Q psy9643         171 YD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATN  236 (412)
Q Consensus       171 ~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n  236 (412)
                      |. +...+.++|+|||.+   ++..+... ...++++        |++.|+             .+++.+|++. +++.|
T Consensus        61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-------------~~~~~~~vp~iivviN  127 (397)
T 1d2e_A           61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-------------LLARQIGVEHVVVYVN  127 (397)
T ss_dssp             EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-------------HHHHHTTCCCEEEEEE
T ss_pred             eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-------------HHHHHcCCCeEEEEEE
Confidence            22 234678999999965   33333211 1222222        344444             6778899996 57799


Q ss_pred             ccCCCC
Q psy9643         237 AAGGLN  242 (412)
Q Consensus       237 ~~G~l~  242 (412)
                      |+|..+
T Consensus       128 K~Dl~~  133 (397)
T 1d2e_A          128 KADAVQ  133 (397)
T ss_dssp             CGGGCS
T ss_pred             CcccCC
Confidence            999764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.06  E-value=2.7e-11  Score=123.87  Aligned_cols=126  Identities=24%  Similarity=0.315  Sum_probs=72.5

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      ++|+++||+++||+|||||||+++|++..  +.+....+.++..            .+++++|.++.|+++||++..++.
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~--~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~   97 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDS--KMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   97 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHT--TCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhc--CCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeee
Confidence            35678999999999999999999994321  2221111111110            235778999999999999965543


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE--EEEe--------cceeeeecCCCCccccHHHHHH
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP--IMCM--------QGRFHYYEGYPLWKCAMPIRVM  224 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~--------qgr~H~yeg~~~~~v~~~i~ll  224 (412)
                      .+          .+ +...+.+.|+|||.+   ++..+ +....  ++++        |++.|+             .++
T Consensus        98 ~~----------~~-~~~~~~iiDtpGh~~f~~~~~~~-~~~aD~~ilVvDa~~g~~~qt~~~l-------------~~~  152 (434)
T 1zun_B           98 YF----------ST-AKRKFIIADTPGHEQYTRNMATG-ASTCDLAIILVDARYGVQTQTRRHS-------------YIA  152 (434)
T ss_dssp             EE----------EC-SSEEEEEEECCCSGGGHHHHHHH-HTTCSEEEEEEETTTCSCHHHHHHH-------------HHH
T ss_pred             Ee----------ec-CCceEEEEECCChHHHHHHHHHH-HhhCCEEEEEEECCCCCcHHHHHHH-------------HHH
Confidence            22          11 122478899999976   23322 22222  2222        234443             677


Q ss_pred             HHcCCCE-EEEEeccCCCC
Q psy9643         225 KLVGVTH-LLATNAAGGLN  242 (412)
Q Consensus       225 ~~lGv~~-II~~n~~G~l~  242 (412)
                      ..+|++. |++.||+|..+
T Consensus       153 ~~~~~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          153 SLLGIKHIVVAINKMDLNG  171 (434)
T ss_dssp             HHTTCCEEEEEEECTTTTT
T ss_pred             HHcCCCeEEEEEEcCcCCc
Confidence            8899985 55699999765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.01  E-value=4.1e-11  Score=127.72  Aligned_cols=142  Identities=20%  Similarity=0.409  Sum_probs=87.1

Q ss_pred             ccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCc
Q psy9643          86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGS  154 (412)
Q Consensus        86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~Gs  154 (412)
                      ....++|+++||+++||+|+|||||+++|   ++. +.+......++++.          .+|+++.+..++.+||++..
T Consensus       159 ~~l~~~k~~lkV~ivG~~n~GKSTLin~L---l~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~  235 (611)
T 3izq_1          159 AFVKSALPHLSFVVLGHVDAGKSTLMGRL---LYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI  235 (611)
T ss_dssp             --CCCCCCCCEEEEECCSSSCHHHHHHHH---HSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSC
T ss_pred             HHHhccCCceEEEEEECCCCCHHHHHHHH---HHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEee
Confidence            34456788999999999999999999999   554 44555545554433          26888888888999999976


Q ss_pred             CcccccccccCceeeecCCCCCccccCCCCCce---eEEEEeeCCeE--EEEecceeeeec-CCCCc-cccHHHHHHHHc
Q psy9643         155 GLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLINGIP--IMCMQGRFHYYE-GYPLW-KCAMPIRVMKLV  227 (412)
Q Consensus       155 Gl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~g~~--vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~l  227 (412)
                      +...+          .+. ...+.++|+|||.+   ++..+. .+..  ++++......+| +.... .....+.++..+
T Consensus       236 ~~~~~----------~~~-~~~~~iiDTPG~e~f~~~~~~~~-~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l  303 (611)
T 3izq_1          236 CTSHF----------STH-RANFTIVDAPGHRDFVPNAIMGI-SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL  303 (611)
T ss_dssp             SCCEE----------ECS-SCEEEEEECCSSSCHHHHHTTTS-SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT
T ss_pred             eeEEE----------ecC-CceEEEEECCCCcccHHHHHHHH-hhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc
Confidence            55432          222 23578999999975   222222 2222  222211110001 11111 111134778889


Q ss_pred             CCCEE-EEEeccCCCC
Q psy9643         228 GVTHL-LATNAAGGLN  242 (412)
Q Consensus       228 Gv~~I-I~~n~~G~l~  242 (412)
                      |++.+ +++||++..+
T Consensus       304 gi~~iIVVvNKiDl~~  319 (611)
T 3izq_1          304 GIHNLIIAMNKMDNVD  319 (611)
T ss_dssp             TCCEEEEEEECTTTTT
T ss_pred             CCCeEEEEEecccccc
Confidence            99854 4589999765

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.99  E-value=7.6e-11  Score=119.53  Aligned_cols=144  Identities=22%  Similarity=0.291  Sum_probs=74.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccccc--Ccee
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSIT--DRHI  168 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~--~~~~  168 (412)
                      .|+++||+++||+|||||||+++|++..                    .++...++++|||++.++..+.-...  ....
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~--------------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y   64 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVW--------------------TDRHSEELRRGISIRLGYADCEIRKCPQCGTY   64 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCC--------------------CCC-------CCCCCCEEEEEEEEECTTTCCE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCc--------------------cccCcccccCCcEEEecccccccccccccccc
Confidence            4669999999999999999999995431                    12334567789999887654310000  0000


Q ss_pred             e----------ecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeecCCCCccccHHHHHHHHcCCCE-EE
Q psy9643         169 F----------PYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LL  233 (412)
Q Consensus       169 ~----------~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II  233 (412)
                      .          .|.....+.++|+|||.+   +++.|... ...++++...    +|.+..+....+.+++.+|++. |+
T Consensus        65 ~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~----~g~~~~qt~e~l~~~~~l~~~~iiv  140 (408)
T 1s0u_A           65 TTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAAN----EPCPQPQTKEHLMALEILGIDKIII  140 (408)
T ss_dssp             ESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETT----SCSSCHHHHHHHHHHHHTTCCCEEE
T ss_pred             cccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECC----CCCCCchhHHHHHHHHHcCCCeEEE
Confidence            0          000113578899999976   33333211 1222222111    0110011111226778899865 56


Q ss_pred             EEeccCCCCCCCCCccHHHHHHHHh
Q psy9643         234 ATNAAGGLNPDYEVGDIMIIKDHIN  258 (412)
Q Consensus       234 ~~n~~G~l~~~~~~Gd~vi~~d~i~  258 (412)
                      +.||+|..+.+...-.+-.+.+++.
T Consensus       141 v~NK~Dl~~~~~~~~~~~~i~~~l~  165 (408)
T 1s0u_A          141 VQNKIDLVDEKQAEENYEQIKEFVK  165 (408)
T ss_dssp             EEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHHHHHh
Confidence            6999998775532223334455543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.97  E-value=5.3e-11  Score=120.55  Aligned_cols=124  Identities=31%  Similarity=0.434  Sum_probs=74.2

Q ss_pred             ccccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cc-cchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccc
Q psy9643          86 QVYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GM-LGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSI  163 (412)
Q Consensus        86 ~~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~-~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~  163 (412)
                      +.+.++|+++||+++||+|||||||+.+|++.+.+ |. .....        .+.+|....|+++|+++....       
T Consensus         3 ~~~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~--------~~~~d~~~~e~~~GiTi~~~~-------   67 (405)
T 2c78_A            3 GEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD--------YGDIDKAPEERARGITINTAH-------   67 (405)
T ss_dssp             ------CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCC--------HHHHSCSHHHHHHTCCCSCEE-------
T ss_pred             ccccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccc--------hhhccCCHHHHHcCCCEEeee-------
Confidence            45667888999999999999999999999653222 11 00000        124566666788999885422       


Q ss_pred             cCceeeecC-CCCCccccCCCCCce---eEEEEe--eCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCC
Q psy9643         164 TDRHIFPYD-TIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVT  230 (412)
Q Consensus       164 ~~~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~  230 (412)
                           ..|. ....+.++|+|||.+   ++..+.  .++.-+|+-       |++.|+             .+++.+|++
T Consensus        68 -----~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l-------------~~~~~~~ip  129 (405)
T 2c78_A           68 -----VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-------------LLARQVGVP  129 (405)
T ss_dssp             -----EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-------------HHHHHTTCC
T ss_pred             -----eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCC
Confidence                 2222 234578999999976   222222  223322321       233333             677889999


Q ss_pred             E-EEEEeccCCCC
Q psy9643         231 H-LLATNAAGGLN  242 (412)
Q Consensus       231 ~-II~~n~~G~l~  242 (412)
                      + +++.||+|..+
T Consensus       130 ~iivviNK~Dl~~  142 (405)
T 2c78_A          130 YIVVFMNKVDMVD  142 (405)
T ss_dssp             CEEEEEECGGGCC
T ss_pred             EEEEEEECccccC
Confidence            5 56799999764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.96  E-value=1.4e-10  Score=129.87  Aligned_cols=123  Identities=34%  Similarity=0.434  Sum_probs=65.7

Q ss_pred             cccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccC
Q psy9643          87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITD  165 (412)
Q Consensus        87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~  165 (412)
                      ...++|+++||+++||+|||||||+++|++...+ |...   +     ...+.+|+++.|+++|||+.++..        
T Consensus       289 ~~~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~---f-----~~~a~lD~~~~ErerGITIdva~v--------  352 (1289)
T 3avx_A          289 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGA---A-----RAFDQIDNAPEEKARGITINTSHV--------  352 (1289)
T ss_dssp             -CCCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------------CCSCE--------
T ss_pred             hhhccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccc---c-----ccccccccccccccCceeEEEEEE--------
Confidence            4557888999999999999999999999653221 1100   0     001256777889999999965432        


Q ss_pred             ceeeecC-CCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCE-
Q psy9643         166 RHIFPYD-TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-  231 (412)
Q Consensus       166 ~~~~~~~-~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-  231 (412)
                          .|. +...+.++|+|||.+   ++..|.-. ...++++        |++.|+             .+++.+|+++ 
T Consensus       353 ----~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-------------~ll~~lgIP~I  415 (1289)
T 3avx_A          353 ----EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-------------LLGRQVGVPYI  415 (1289)
T ss_dssp             ----EEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-------------HHHHHHTCSCE
T ss_pred             ----EEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-------------HHHHHcCCCeE
Confidence                222 234678999999976   33333211 1122222        344444             6778899996 


Q ss_pred             EEEEeccCCCC
Q psy9643         232 LLATNAAGGLN  242 (412)
Q Consensus       232 II~~n~~G~l~  242 (412)
                      ||++||+|..+
T Consensus       416 IVVINKiDLv~  426 (1289)
T 3avx_A          416 IVFLNKCDMVD  426 (1289)
T ss_dssp             EEEEECCTTCC
T ss_pred             EEEEeeccccc
Confidence            66799999864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.96  E-value=1.6e-10  Score=122.61  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ..+||+++||+|||||||+.+|   ++. |.+..+.      ..++++|.++.|+++||++.+....          +.|
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rL---l~~tg~i~~~~------~~~~~~D~~~~ErerGiTi~~~~~~----------~~~   63 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRI---IQICGGLSDRE------MEAQVLDSMDLERERGITIKAQSVT----------LDY   63 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHH---HHHTTC--------------------------------CEEE----------EEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHH---HHhcCCccccc------ccccccccchhhhcccceeeeeEEE----------EEE
Confidence            3789999999999999999999   443 3332221      1356688888999999999664432          333


Q ss_pred             CC----CCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         172 DT----IPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       172 ~~----~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      ..    ...++++|+|||.+   .+..+  ..++.-+|+--.     +|..+.+. ...+.+...+++.|+++||+|..+
T Consensus        64 ~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~-----~gv~~qt~-~~~~~~~~~~ipiIvViNKiDl~~  137 (599)
T 3cb4_D           64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAG-----QGVEAQTL-ANCYTAMEMDLEVVPVLNKIDLPA  137 (599)
T ss_dssp             ECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETT-----TCCCTHHH-HHHHHHHHTTCEEEEEEECTTSTT
T ss_pred             ecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECC-----CCCCHHHH-HHHHHHHHCCCCEEEeeeccCccc
Confidence            21    12467999999976   11111  123333333210     11111111 123566778999999999999765


Q ss_pred             C
Q psy9643         243 P  243 (412)
Q Consensus       243 ~  243 (412)
                      .
T Consensus       138 a  138 (599)
T 3cb4_D          138 A  138 (599)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.95  E-value=1.9e-10  Score=122.11  Aligned_cols=119  Identities=20%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ...||+++||+|||||||+.+|   ++. +.+..+.      ..++++|.++.|+++||++.+....          +.|
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rL---l~~tg~i~~~~------~~~~~~D~~~~ErerGITI~~~~~~----------~~~   65 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRL---LEYTGAISERE------KREQLLDTLDVERERGITVKMQAVR----------MFY   65 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHH---HHHHTC-----------------------------CCCCSEE----------EEE
T ss_pred             CceEEEEECCCCCCHHHHHHHH---HhccCCccccc------ccccccccchhhhcccceeeeeEEE----------EEE
Confidence            3789999999999999999999   443 3332221      1356788888999999999765432          223


Q ss_pred             CC----CCCccccCCCCCce---eEEEE--eeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEE
Q psy9643         172 DT----IPYFPVSTVPGHKG---QLVFG--LINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLAT  235 (412)
Q Consensus       172 ~~----~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~  235 (412)
                      ..    ...++++|+|||.+   .+..+  ..++.-+|+-       |++.|+             +.+...+++.|+++
T Consensus        66 ~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~-------------~~a~~~~ipiIvvi  132 (600)
T 2ywe_A           66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANF-------------WKAVEQDLVIIPVI  132 (600)
T ss_dssp             ECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHH-------------HHHHHTTCEEEEEE
T ss_pred             EcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH-------------HHHHHCCCCEEEEE
Confidence            21    12467899999976   11111  1233323321       223333             56677899999999


Q ss_pred             eccCCCCC
Q psy9643         236 NAAGGLNP  243 (412)
Q Consensus       236 n~~G~l~~  243 (412)
                      ||+|..+.
T Consensus       133 NKiDl~~a  140 (600)
T 2ywe_A          133 NKIDLPSA  140 (600)
T ss_dssp             ECTTSTTC
T ss_pred             eccCcccc
Confidence            99997653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.94  E-value=6.9e-11  Score=119.87  Aligned_cols=121  Identities=26%  Similarity=0.374  Sum_probs=72.5

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccccccc-C-ce
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSIT-D-RH  167 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~-~-~~  167 (412)
                      ..++++||+++||+|||||||+++|++..                    .++...|+++|||++.++..+.-... . ..
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~--------------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~   65 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVW--------------------TDTHSEELRRGITIKIGFADAEIRRCPNCGR   65 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCC--------------------CC--CGGGGSCSSSCCEEEEEEEEECTTTCC
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCc--------------------cccChhhhcCCcEEEEeeeeeeccccccccc
Confidence            35679999999999999999999996431                    12345577889999887654310000 0 00


Q ss_pred             ee----------ecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe---------cceeeeecCCCCccccHHHHHH
Q psy9643         168 IF----------PYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM---------QGRFHYYEGYPLWKCAMPIRVM  224 (412)
Q Consensus       168 ~~----------~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~---------qgr~H~yeg~~~~~v~~~i~ll  224 (412)
                      ..          .|.....+.++|+|||.+   +++.|... ...++++         |+++|+             .++
T Consensus        66 y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-------------~~~  132 (410)
T 1kk1_A           66 YSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-------------MAL  132 (410)
T ss_dssp             EESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-------------HHH
T ss_pred             ccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-------------HHH
Confidence            00          000113578899999975   34444321 1222222         233333             677


Q ss_pred             HHcCCCEE-EEEeccCCCCC
Q psy9643         225 KLVGVTHL-LATNAAGGLNP  243 (412)
Q Consensus       225 ~~lGv~~I-I~~n~~G~l~~  243 (412)
                      +.+|++.+ +++||+|..+.
T Consensus       133 ~~~~~~~iivviNK~Dl~~~  152 (410)
T 1kk1_A          133 QIIGQKNIIIAQNKIELVDK  152 (410)
T ss_dssp             HHHTCCCEEEEEECGGGSCH
T ss_pred             HHcCCCcEEEEEECccCCCH
Confidence            88898655 55999998654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.90  E-value=2e-10  Score=119.15  Aligned_cols=111  Identities=22%  Similarity=0.342  Sum_probs=61.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      .+++||+++||+|||||||+++|++..                ..+..|+...++++|+|++.+...+          .+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~----------------~~~~~d~~~~e~~~GiTi~~~~~~~----------~~   70 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIA----------------STSAHDKLPESQKRGITIDIGFSAF----------KL   70 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC------------------------------------CCCEE----------EE
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCC----------------cccccccccccccCccEEecceEEE----------EE
Confidence            348999999999999999999995421                0124566777889999997766432          22


Q ss_pred             CCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643         172 DTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG  239 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G  239 (412)
                      .. ..+.++|+|||.+   ++..+... ...++++        |+++|+             .+++.+|++.|++.||+|
T Consensus        71 ~~-~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-------------~~~~~~~ip~IvviNK~D  136 (482)
T 1wb1_A           71 EN-YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-------------LILDHFNIPIIVVITKSD  136 (482)
T ss_dssp             TT-EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-------------HHHHHTTCCBCEEEECTT
T ss_pred             CC-EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-------------HHHHHcCCCEEEEEECCC
Confidence            22 3478899999975   33333211 1222222        344444             688889999999999999


Q ss_pred             CCC
Q psy9643         240 GLN  242 (412)
Q Consensus       240 ~l~  242 (412)
                      ..+
T Consensus       137 l~~  139 (482)
T 1wb1_A          137 NAG  139 (482)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.72  E-value=4.3e-09  Score=105.54  Aligned_cols=90  Identities=19%  Similarity=0.277  Sum_probs=61.7

Q ss_pred             eEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCC
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIP  175 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~  175 (412)
                      ||+++||+|||||||+++|+                               ++|+|++.++..+          .+. ..
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-------------------------------~~giTi~~~~~~~----------~~~-~~   60 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-------------------------------KKGTSSDITMYNN----------DKE-GR   60 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-------------------------------EEEEESSSEEEEE----------CSS-SS
T ss_pred             EEEEECCCCCCHHHHHHHHH-------------------------------hCCEEEEeeEEEE----------ecC-Ce
Confidence            99999999999999999992                               5799987655332          222 23


Q ss_pred             CccccCCCCCce---eEEEEeeC-CeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCE-EEEEe-ccCC
Q psy9643         176 YFPVSTVPGHKG---QLVFGLIN-GIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTH-LLATN-AAGG  240 (412)
Q Consensus       176 ~~~i~d~pGH~~---~l~~G~~~-g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~-II~~n-~~G~  240 (412)
                      .+.++|+|||.+   ++..+.-. ...++++       |+++|+             .+++.+|++. |+++| |+|.
T Consensus        61 ~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd~~g~~~qt~e~~-------------~~~~~~~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHTGECI-------------IALDLLGFKHGIIALTRSDST  125 (370)
T ss_dssp             EEEEEECTTTTTCHHHHHHHHHTCSEEEEEECTTCCCHHHHHHH-------------HHHHHTTCCEEEEEECCGGGS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHCCEEEEEEcCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEEeccCC
Confidence            478999999976   33333211 1222222       233333             6788899999 77888 9987

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.72  E-value=4.9e-09  Score=113.47  Aligned_cols=130  Identities=20%  Similarity=0.223  Sum_probs=75.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      +..+||+++||+|||||||+.+|   ++. +.....  .+++. -..++|....|+++||++.+....+          .
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~L---l~~~g~~~~~--g~v~~-g~~~~D~~~~E~~rgiTi~~~~~~~----------~   71 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERI---LFYTGVNHKI--GEVHD-GAATMDWMEQEQERGITITSAATTA----------F   71 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHH---HHhcCCcccc--cccCC-CceeecChhhHHhcCceeeeceEEE----------E
Confidence            34789999999999999999999   432 222110  01111 1234566667889999997755332          2


Q ss_pred             cCC------CCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccC
Q psy9643         171 YDT------IPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAG  239 (412)
Q Consensus       171 ~~~------~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G  239 (412)
                      |..      ...++++|+|||.+   .+..+  ..++.-+++ ...    +|..+.. ....+.+...+++.++++||++
T Consensus        72 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVv-Da~----~gv~~qt-~~~~~~~~~~~ip~ilviNKiD  145 (704)
T 2rdo_7           72 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVY-CAV----GGVQPQS-ETVWRQANKYKVPRIAFVNKMD  145 (704)
T ss_pred             ECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEE-eCC----CCCcHHH-HHHHHHHHHcCCCEEEEEeCCC
Confidence            222      14578999999975   11111  123333332 211    0111111 1123566778999999999999


Q ss_pred             CCCC
Q psy9643         240 GLNP  243 (412)
Q Consensus       240 ~l~~  243 (412)
                      ..+.
T Consensus       146 ~~~~  149 (704)
T 2rdo_7          146 RMGA  149 (704)
T ss_pred             cccc
Confidence            7654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.62  E-value=1.1e-08  Score=107.27  Aligned_cols=131  Identities=19%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchh-hHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSY-TYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~-~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      ..+||+++||+|||||||+.+|+   +. +.+... ....-+.....++|..+.++++|+++.+...          .+.
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll---~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~----------~~~   78 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVL---LFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVM----------QFP   78 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHH---HSCC-------------------------------CCTTEE----------EEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH---hhcCCccccceeecCccccceeeccchhcccCCcceeeeEE----------EEE
Confidence            47899999999999999999994   32 222110 0000001112345667788999999866443          233


Q ss_pred             cCCCCCccccCCCCCce---eEEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         171 YDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       171 ~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      |.. ..+.++|+|||.+   .+..+  ..++. ++++....    |..+. .......+...+++.++++||+|..+.
T Consensus        79 ~~~-~~i~liDTPG~~df~~~~~~~l~~aD~~-IlVvDa~~----g~~~~-t~~~~~~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           79 YHD-CLVNLLDTPGHEDFSEDTYRTLTAVDCC-LMVIDAAK----GVEDR-TRKLMEVTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             ETT-EEEEEECCCCSTTCCHHHHHGGGGCSEE-EEEEETTT----CSCHH-HHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred             ECC-eEEEEEECCCChhHHHHHHHHHHHCCEE-EEEEeCCc----cchHH-HHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence            332 2478999999975   11111  12222 22222110    11111 111224566679999999999997654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.55  E-value=6.6e-08  Score=100.53  Aligned_cols=109  Identities=21%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDT  173 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~  173 (412)
                      ..+|+++||+|||||||+.+|++.-                       .......|||...+.+.+          .+..
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~-----------------------v~~~e~~GIT~~i~~~~v----------~~~~   50 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTK-----------------------VASGEAGGITQHIGAYHV----------ETEN   50 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHH-----------------------HSBTTBCCCCCCSSCCCC----------CTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCC-----------------------CccccCCCeeEeEEEEEE----------EECC
Confidence            5689999999999999999993210                       011223677776554332          2222


Q ss_pred             CCCccccCCCCCce---eEEEEe--eCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         174 IPYFPVSTVPGHKG---QLVFGL--INGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       174 ~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                       ..+.+.|+|||.+   .+..|.  .++. ++++...    +|..+. ....+..++.++++.|++.||+|..+
T Consensus        51 -~~i~~iDTPGhe~f~~~~~~~~~~aD~a-ILVVda~----~g~~~q-T~e~l~~~~~~~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           51 -GMITFLDTPGHAAFTSMRARGAQATDIV-VLVVAAD----DGVMPQ-TIEAIQHAKAAQVPVVVAVNKIDKPE  117 (501)
T ss_dssp             -SCCCEECCCTTTCCTTSBCSSSBSCSSE-EEEEETT----TBSCTT-THHHHHHHHHTTCCEEEEEECSSSST
T ss_pred             -EEEEEEECCCcHHHHHHHHHHHhhCCEE-EEEeecc----cCccHH-HHHHHHHHHhcCceEEEEEEeccccc
Confidence             3578999999976   222222  1222 2332110    011111 11123677889999888999999764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.52  E-value=1.2e-08  Score=112.34  Aligned_cols=141  Identities=19%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc--
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR--  166 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~--  166 (412)
                      +.+..+||+++||+|||||||+.+|   ++. +.+....     ......+|....|+++|||+++....+.-.....  
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~L---l~~~g~i~~~~-----~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~   86 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSL---VQRAGIISAAK-----AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV   86 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHH---HHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHH
T ss_pred             CcccccEEEEECCCCCCHHHHHHHH---HHhcCCccccc-----CCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence            3444789999999999999999999   443 3332211     1112346677788999999977543321000000  


Q ss_pred             eee--ecC-CCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643         167 HIF--PYD-TIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA  238 (412)
Q Consensus       167 ~~~--~~~-~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~  238 (412)
                      ..+  ... ....++++|+|||.+  ..+.-   ..++.-+|+ ...    +|..+... ...+.+...++..|+++||+
T Consensus        87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVv-Da~----~g~~~qt~-~~~~~~~~~~~p~ilviNK~  160 (842)
T 1n0u_A           87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVV-DTI----EGVCVQTE-TVLRQALGERIKPVVVINKV  160 (842)
T ss_dssp             HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEE-ETT----TBSCHHHH-HHHHHHHHTTCEEEEEEECH
T ss_pred             ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEE-eCC----CCCCHHHH-HHHHHHHHcCCCeEEEEECC
Confidence            000  000 012468899999976  00111   123332332 211    11111111 11245556799999999999


Q ss_pred             CCCCCC
Q psy9643         239 GGLNPD  244 (412)
Q Consensus       239 G~l~~~  244 (412)
                      |..+.+
T Consensus       161 D~~~~e  166 (842)
T 1n0u_A          161 DRALLE  166 (842)
T ss_dssp             HHHHHT
T ss_pred             Ccchhh
Confidence            976433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.48  E-value=4.7e-08  Score=105.53  Aligned_cols=128  Identities=20%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ...||+++||+|||||||+.+|+   +. +....  ..+++. ...++|....|+++|+++++....          +.+
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll---~~~g~~~~--~g~v~~-~~~~~d~~~~E~~~giTi~~~~~~----------~~~   74 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERIL---YYTGRIHK--IGEVHE-GAATMDFMEQERERGITITAAVTT----------CFW   74 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHH---HHHCC-------------------------------CCEEE----------EEE
T ss_pred             cccEEEEECCCCCCHHHHHHHHH---HhcCCCcc--cceecC-CceeccCchhhhhcccccccceEE----------EEE
Confidence            37899999999999999999994   32 22111  111211 134567777889999999765432          233


Q ss_pred             CCCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         172 DTIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      .. ..+.++|+|||.+  ....-   ..++. ++++....    |..... ....+.+...+++.++++||+|..+.
T Consensus        75 ~~-~~i~liDTPG~~df~~~~~~~l~~aD~~-ilVvDa~~----g~~~~t-~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           75 KD-HRINIIDTPGHVDFTIEVERSMRVLDGA-IVVFDSSQ----GVEPQS-ETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TT-EEEEEECCCSSTTCHHHHHHHHHHCSEE-EEEEETTT----CSCHHH-HHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             CC-eEEEEEECcCccchHHHHHHHHHHCCEE-EEEEECCC----Ccchhh-HHHHHHHHHcCCCEEEEEECCCcccC
Confidence            22 2468899999965  11110   12222 22322110    111111 11235677789999999999997653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.41  E-value=2.5e-08  Score=104.51  Aligned_cols=127  Identities=21%  Similarity=0.284  Sum_probs=71.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH---HHHHHhhhcCCCCceeEeeCcCcccccccccCceee
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS---IAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIF  169 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~---~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~  169 (412)
                      ..||+++||.|+|||||+.+|   ++. +.+..  ...+..   ......|....++++|+++.+...          .+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~L---l~~~g~i~~--~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~----------~~   77 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKL---LLFGGAIQL--AGTIKSRKAARHATSDWMELEKQRGISVTTSVM----------QF   77 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHH---HHHTTCHHH--HHHHHTC----CCHHHHHHHHHHHCCSSSSSEE----------EE
T ss_pred             CCEEEEECCCCCcHHHHHHHH---HhhcCCccc--ceeeeccccccceecccchhhhcCCeeEEEeEE----------EE
Confidence            789999999999999999999   443 32211  111111   011234444556788998866443          23


Q ss_pred             ecCCCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCC
Q psy9643         170 PYDTIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN  242 (412)
Q Consensus       170 ~~~~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~  242 (412)
                      .+.. ..+.++|+|||.+  ....-   ..++. ++++....    |..... ......+...++..++++||+|..+
T Consensus        78 ~~~~-~~i~liDTPG~~df~~~~~~~l~~aD~a-llVvDa~~----g~~~~t-~~~~~~~~~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           78 PYKD-YLINLLDTPGHADFTEDTYRTLTAVDSA-LMVIDAAK----GVEPRT-IKLMEVCRLRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EETT-EEEEEECCCCSTTCCHHHHHGGGGCSEE-EEEEETTT----CSCHHH-HHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred             EeCC-EEEEEEECCCchhHHHHHHHHHHhCCEE-EEEEeCCC----CCCHHH-HHHHHHHHHcCCCEEEEEeCCCCcc
Confidence            3332 2468999999976  11111   12222 22322110    111111 1122567778999999999998754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.30  E-value=3.2e-07  Score=99.07  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=60.4

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      ...||+++||+|||||||+.+|++.  .+.....  ..+.. ....+|....++++|+++++....          +.+.
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~--~~~~~~~--g~v~~-~~~~~D~~~~e~~~giTi~~~~~~----------~~~~   73 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYY--TGRIHKI--GETHE-GASQMDWMEQEQDRGITITSAATT----------AAWE   73 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHH--HSSCC----------------------------CCSEEE----------EEET
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh--cCCcccc--ccccC-CceecccchhhhhcCceEeeeeEE----------EEEC
Confidence            3789999999999999999999421  1221110  11111 124466667788999999765432          2333


Q ss_pred             CCCCccccCCCCCce--eEEEE---eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCC
Q psy9643         173 TIPYFPVSTVPGHKG--QLVFG---LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNP  243 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~--~l~~G---~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~  243 (412)
                      . ..+.++|+|||.+  ..+.-   ..++. ++++....    |...... ...+.+...++..++++||+|..+.
T Consensus        74 ~-~~i~liDTPG~~df~~~~~~~l~~aD~~-llVvDa~~----g~~~~~~-~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           74 G-HRVNIIDTPGHVDFTVEVERSLRVLDGA-VTVLDAQS----GVEPQTE-TVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             T-EEEEEECCCCCSSCCHHHHHHHHHCSEE-EEEEETTT----BSCHHHH-HHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             C-eeEEEEECcCCcchHHHHHHHHHHCCEE-EEEECCCC----CCcHHHH-HHHHHHHHcCCCEEEEEECCCcccc
Confidence            2 2468899999975  00000   12222 22222110    1111111 1235667789999999999997653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.27  E-value=2.7e-07  Score=93.21  Aligned_cols=28  Identities=61%  Similarity=0.897  Sum_probs=24.6

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..++++||+++||+|||||||+.+|++.
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence            3566899999999999999999999653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.11  E-value=5.5e-07  Score=94.37  Aligned_cols=112  Identities=23%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             eeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCC
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTI  174 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~  174 (412)
                      ..|+++||+|||||||+.+|++.-            +.           .....|++...+...+          .+..-
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~------------~~-----------~~~~~giT~~i~~~~v----------~~~~g   51 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQ------------VA-----------AMEAGGITQHIGAFLV----------SLPSG   51 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHH------------HH-----------HSSSCCBCCCTTSCCB----------CSSCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC------------cc-----------cccCCceeEEEeEEEE----------EeCCC
Confidence            457899999999999999994310            00           0123466654444322          22222


Q ss_pred             CCccccCCCCCce--eEEEEeeCCe--EEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         175 PYFPVSTVPGHKG--QLVFGLINGI--PIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       175 ~~~~i~d~pGH~~--~l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      ..+.+.|+|||.+  .+..-.+...  .++++....    |..+. ....+..++.+|++.|++.||+|..+.+
T Consensus        52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d----g~~~q-t~e~l~~~~~~~vPiIVViNKiDl~~~~  120 (537)
T 3izy_P           52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD----GVMKQ-TVESIQHAKDAHVPIVLAINKCDKAEAD  120 (537)
T ss_dssp             SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS----CCCHH-HHHHHHHHHTTTCCEEECCBSGGGTTTS
T ss_pred             CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC----CccHH-HHHHHHHHHHcCCcEEEEEecccccccc
Confidence            3578999999975  2222112222  233321110    11111 1112367888999988889999976543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.05  E-value=1.4e-06  Score=92.49  Aligned_cols=22  Identities=50%  Similarity=0.714  Sum_probs=20.2

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+|+++||+|||||||+.+|+
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~   26 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIR   26 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCcHHHHHHHHh
Confidence            4689999999999999999994

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.93  E-value=1e-06  Score=94.65  Aligned_cols=123  Identities=14%  Similarity=0.122  Sum_probs=66.2

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhcc---c-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCcee
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLM---E-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHI  168 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~---~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~  168 (412)
                      +..||+++||+|||||||+.+|++...   . |.+..         -..+.+....++++||++.+..          ..
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~---------g~~~~d~~~~e~~~giti~~~~----------~~   68 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEE---------GTTTTDYTPEAKLHRTTVRTGV----------AP   68 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGG---------TCCSSCCSHHHHHTTSCCSCEE----------EE
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecC---------CcccccCCHHHHhcCCeEEecc----------eE
Confidence            478999999999999999999964322   1 21100         0112222223445666663321          12


Q ss_pred             eecCCCCCccccCCCCCce--e-EEEE--eeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCC
Q psy9643         169 FPYDTIPYFPVSTVPGHKG--Q-LVFG--LINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL  241 (412)
Q Consensus       169 ~~~~~~~~~~i~d~pGH~~--~-l~~G--~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l  241 (412)
                      +.+. ...+++.|+|||.+  . +...  ..++ .++++...    +|..+... ..++.+...|+..|+++|+++..
T Consensus        69 ~~~~-~~~~nliDTpG~~~f~~~~~~~l~~ad~-~ilVvD~~----~g~~~qt~-~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           69 LLFR-GHRVFLLDAPGYGDFVGEIRGALEAADA-ALVAVSAE----AGVQVGTE-RAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEET-TEEEEEEECCCSGGGHHHHHHHHHHCSE-EEEEEETT----TCSCHHHH-HHHHHHHHTTCCEEEEEECGGGC
T ss_pred             EeeC-CEEEEEEeCCCccchHHHHHHHHhhcCc-EEEEEcCC----cccchhHH-HHHHHHHHccCCEEEEecCCchh
Confidence            2222 22468899999976  1 1111  1222 23333211    11111111 12366777899999999999865

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.46  E-value=7.4e-05  Score=76.01  Aligned_cols=114  Identities=13%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      ...+||+++||+++|||||+.+|++   ..      +.             ..+...|++...          ....+.+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~---~~------~~-------------~~~~~~gtT~d~----------~~~~~~~   79 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVG---QN------VS-------------IVSDYAGTTTDP----------VYKSMEL   79 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-----------------------------------CCC----------CEEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHc---CC------CC-------------ccCCCCCeeeee----------EEEEEEE
Confidence            3478999999999999999999932   10      00             012234454422          1122333


Q ss_pred             CCCCCccccCCCCCceeEEEE---------eeCCeE--EEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         172 DTIPYFPVSTVPGHKGQLVFG---------LINGIP--IMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~~l~~G---------~~~g~~--vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                      .....+.++|+|||.+.--.+         .+.+..  ++++...       ........+..++..+++.+++.||+|.
T Consensus        80 ~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~-------~~~~~~~~l~~l~~~~~piIvV~NK~Dl  152 (423)
T 3qq5_A           80 HPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA-------PTPYEDDVVNLFKEMEIPFVVVVNKIDV  152 (423)
T ss_dssp             TTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS-------CCHHHHHHHHHHHHTTCCEEEECCCCTT
T ss_pred             CCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC-------ChHHHHHHHHHHHhcCCCEEEEEeCcCC
Confidence            333357889999996410000         112222  2232220       0111112345677789999999999998


Q ss_pred             CCCC
Q psy9643         241 LNPD  244 (412)
Q Consensus       241 l~~~  244 (412)
                      .+..
T Consensus       153 ~~~~  156 (423)
T 3qq5_A          153 LGEK  156 (423)
T ss_dssp             TTCC
T ss_pred             CCcc
Confidence            7654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.68  E-value=0.0011  Score=58.84  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +++.++|+++|+.++|||||+.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~   30 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHc
Confidence            45689999999999999999999943

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.62  E-value=0.00082  Score=63.24  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+.++|+++||+++|||||+.+|+
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~   57 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLI   57 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHh
Confidence            3458999999999999999999994

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.53  E-value=0.0013  Score=56.63  Aligned_cols=25  Identities=48%  Similarity=0.647  Sum_probs=21.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +...+|+++|..++|||||+.+|++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3468899999999999999999943

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.53  E-value=0.002  Score=55.67  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|+.++|||||+.+|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            4478999999999999999999943

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.43  E-value=0.0029  Score=59.64  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+.++|+++|+.++|||||+.+|+
T Consensus        36 ~~~~~~I~vvG~~g~GKSSLin~l~   60 (270)
T 1h65_A           36 DVNSLTILVMGKGGVGKSSTVNSII   60 (270)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHh
Confidence            4558999999999999999999994

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.31  E-value=0.002  Score=61.24  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=21.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||..+|++
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            57999999999999999999954

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.26  E-value=0.0034  Score=54.96  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             CCeeeEEeeecccCCChhhhhHH
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      ++.++|+++|+.++|||||+.++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l   42 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRL   42 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHH
Confidence            45799999999999999999999

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.13  E-value=0.0053  Score=53.89  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...++.+|+++|+.++|||||+.+|+
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999999999994

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.09  E-value=0.0013  Score=66.76  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++||.++|||||+.+|++
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~  197 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLG  197 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhC
Confidence            468999999999999999999943

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.07  E-value=0.0017  Score=58.58  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||+.+|++
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            367899999999999999999943

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.06  E-value=0.0016  Score=58.86  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHH
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l  114 (412)
                      ....++|+++|+.++|||||+.++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~   35 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRH   35 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTB
T ss_pred             cccceEEEEECCCCCCHHHHHHHH
Confidence            455899999999999999999996

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.98  E-value=0.0034  Score=55.35  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|..++|||||+.+|++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhc
Confidence            3478999999999999999999943

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.96  E-value=0.0027  Score=55.69  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=21.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +..++|+++|..++|||||+.+|++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Confidence            3468999999999999999999943

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.95  E-value=0.0025  Score=55.90  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++|+.++|||||+.+|+
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~   37 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFA   37 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHH
Confidence            447899999999999999999994

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.78  E-value=0.0039  Score=55.35  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...++|+++|+.++|||||+.+|+
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~   54 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFA   54 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            347899999999999999999993

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.57  E-value=0.012  Score=49.79  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|+.++|||||+.+++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            5789999999999999999993

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=95.39  E-value=0.011  Score=59.16  Aligned_cols=94  Identities=40%  Similarity=0.665  Sum_probs=60.0

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCCC---ccCccc--cchhhccccccccccccccc
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG---IIPLYP--NDKFEINKLNVFVPLINSRR   80 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~   80 (412)
                      |+. +++.++.++.|++++|.++||++++.|++..||+.+.++.++.|+   ++.++.  .+.+..++++     .++++
T Consensus       130 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~-----~~~p~  204 (397)
T 1d2e_A          130 DAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD-----LEKPF  204 (397)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC-----TTSCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC-----CCCcE
Confidence            885 788999999999999999999988999999999998765444342   333332  2222222222     34456


Q ss_pred             hhhhhccccCCCCeeeEEeeecccCCC
Q psy9643          81 GYAEKQVYSRDKPHCNIGTIGHVDHGK  107 (412)
Q Consensus        81 ~~~~~~~~~~~k~~~ni~~igHVD~GK  107 (412)
                      .|++.+++.-.  ..-.++.|-|-+|+
T Consensus       205 ~~~v~~v~~~~--~~G~v~~g~v~~G~  229 (397)
T 1d2e_A          205 LLPVESVYSIP--GRGTVVTGTLERGI  229 (397)
T ss_dssp             EEECCEEEEET--TTEEEEEEECCBSE
T ss_pred             EEEEEEEEEeC--CceEEEEEEEeece
Confidence            66666655422  12223556666653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.36  E-value=0.0021  Score=62.22  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .-+.--|+++|+.++|||||+.+|++
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            34567889999999999999999954

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=95.35  E-value=0.012  Score=57.32  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++|+.++|||||+.+|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~  186 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLK  186 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTC
T ss_pred             cCcceEEEECCCCccHHHHHHHHh
Confidence            447899999999999999999993

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.82  E-value=0.011  Score=60.31  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +...++|+++|+.++|||||+.+|+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~  216 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAML  216 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHh
Confidence            3457899999999999999999994

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.36  E-value=0.017  Score=53.73  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++.++|+++||.++|||||+.+|+
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~   43 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSIL   43 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHh
Confidence            4457899999999999999999994

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=94.10  E-value=0.049  Score=55.98  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|+.++|||||+.+|+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~  254 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLL  254 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            35789999999999999999994

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=93.65  E-value=0.03  Score=56.01  Aligned_cols=41  Identities=56%  Similarity=0.915  Sum_probs=37.3

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE   47 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~   47 (412)
                      |+. +++.++.++.|++++|.++||++++.|++..||+...+
T Consensus       139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          139 DMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            885 78889999999999999999998889999999998864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.60  E-value=0.025  Score=50.43  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +++..++|+++|+.++|||||+.++++
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            355688999999999999999999943

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.51  E-value=0.034  Score=48.30  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++.++|+++|+.++|||||+.+|++.
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999999999653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.40  E-value=0.033  Score=47.65  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +++.++|+++|+.++|||||+.+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHh
Confidence            45589999999999999999999943

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.38  E-value=0.029  Score=47.93  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=22.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.+.++|+++|+.++|||||+.+++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~   28 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHH
Confidence            4557999999999999999999994

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.36  E-value=0.037  Score=48.31  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.+.++|+++|+.++|||||+.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence            45579999999999999999999953

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.31  E-value=0.038  Score=48.55  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.5

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..+.++|+++|+.++|||||+.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~   35 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFM   35 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHH
Confidence            34558999999999999999999994

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=93.22  E-value=0.031  Score=63.26  Aligned_cols=93  Identities=35%  Similarity=0.474  Sum_probs=57.8

Q ss_pred             cCC-CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCCC-CccCccc--cchhhccccccccccccccchh
Q psy9643           7 DAA-DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEI-GIIPLYP--NDKFEINKLNVFVPLINSRRGY   82 (412)
Q Consensus         7 d~~-d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (412)
                      |+. +++.++.++.|++++|.++||++++.|++..||+...++.++|+ |++.++.  .+.+..+.++     .++++.|
T Consensus       423 DLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~-----~d~Pfr~  497 (1289)
T 3avx_A          423 DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-----IDKPFLL  497 (1289)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG-----GGSCCEE
T ss_pred             ccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc-----cccceee
Confidence            885 68889999999999999999998999999999998866432221 3333332  1222222222     3455566


Q ss_pred             hhhccccCCCCeeeEEeeecccCC
Q psy9643          83 AEKQVYSRDKPHCNIGTIGHVDHG  106 (412)
Q Consensus        83 ~~~~~~~~~k~~~ni~~igHVD~G  106 (412)
                      ++.+++.-.  .+-.++.|-|-+|
T Consensus       498 pId~Vf~i~--G~GtVvtGrV~sG  519 (1289)
T 3avx_A          498 PIEDVFSIS--GRGTVVTGRVERG  519 (1289)
T ss_dssp             ECCEEEEET--TTEEEEEEECCBS
T ss_pred             ecccccccc--CCcEEEEEEEecc
Confidence            666665422  1222344555555

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.21  E-value=0.04  Score=47.50  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ....+.++|+++|+.++|||||+.+|+
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHH
Confidence            345568999999999999999999994

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.18  E-value=0.037  Score=48.30  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+..++|+++|+.++|||||+.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhc
Confidence            34478999999999999999999943

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=93.11  E-value=0.032  Score=53.59  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+++||.++|||||+.+|++
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45799999999999999999954

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=93.09  E-value=0.052  Score=56.25  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|..++|||||..++++
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~   63 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIG   63 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999999999953

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.03  E-value=0.041  Score=46.10  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|+.++|||||+.+++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~   24 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999999994

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.98  E-value=0.051  Score=46.38  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||+.+|++
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999999943

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.90  E-value=0.044  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.++|+++|+.++|||||+.+|+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~   25 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHH
Confidence            36899999999999999999994

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.59  E-value=0.044  Score=55.66  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+++|+.++|||||..+|++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35789999999999999999943

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=92.58  E-value=0.021  Score=57.70  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..|+++|+.++|||||..+|+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~   24 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIA   24 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHE
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999994

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.55  E-value=0.052  Score=45.63  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||+.++++
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            68999999999999999999943

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.50  E-value=0.066  Score=45.69  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++.++|+++|+.++|||||+.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~   27 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFA   27 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHH
Confidence            3457999999999999999999994

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.49  E-value=0.047  Score=45.98  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=21.0

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++++|+++|+.++|||||+.+++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~   24 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999999999994

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.39  E-value=0.053  Score=50.84  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++|+++||.++|||||+.+|++.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999999653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.33  E-value=0.058  Score=45.40  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||+.+|++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHc
Confidence            378999999999999999999943

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.32  E-value=0.053  Score=46.49  Aligned_cols=24  Identities=29%  Similarity=0.252  Sum_probs=21.2

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++|+.++|||||+.+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~   29 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYT   29 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            347899999999999999999994

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.28  E-value=0.059  Score=45.76  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=21.2

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.++|+++|+.++|||||+.+|+
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~   25 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFA   25 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEEECCCCccHHHHHHHHh
Confidence            47899999999999999999994

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.14  E-value=0.062  Score=46.08  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.4

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+.++|+++|+.++|||||+.+|+
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHh
Confidence            3457999999999999999999994

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.12  E-value=0.06  Score=46.96  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..|+.++|+++|+.++|||||+.+|+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~   43 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHH
Confidence            35668999999999999999999994

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.07  E-value=0.069  Score=44.54  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||+.++++
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Confidence            57899999999999999999943

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.00  E-value=0.091  Score=47.13  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++..-|+++|..++|||||+..|.+.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999997654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.97  E-value=0.069  Score=46.03  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=22.0

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|+.++|||||+.+|++
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999999999943

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=91.95  E-value=0.067  Score=46.26  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||+.+|++
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            67999999999999999999954

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=91.95  E-value=0.059  Score=45.46  Aligned_cols=24  Identities=13%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.++|+++|+.++|||||+.+|++
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~   28 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVE   28 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            478999999999999999999943

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.95  E-value=0.062  Score=46.25  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|+.++|||||+.+|++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3478999999999999999999943

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.85  E-value=0.061  Score=45.84  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.++|+++|+.++|||||+.+|+
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHh
Confidence            347899999999999999999993

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.83  E-value=0.052  Score=45.69  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++++|+++|+.++|||||+.+|++
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999999943

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.82  E-value=0.064  Score=46.10  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            457999999999999999999993

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.76  E-value=0.082  Score=44.68  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~   28 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQ   28 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            447899999999999999999994

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.74  E-value=0.07  Score=45.06  Aligned_cols=24  Identities=21%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~   27 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            447899999999999999999994

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.68  E-value=0.083  Score=45.84  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+|+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            457999999999999999999994

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.65  E-value=0.077  Score=44.70  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||+.+|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            68999999999999999999943

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.61  E-value=0.077  Score=45.10  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|+.++|||||+.+|++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc
Confidence            3478999999999999999999943

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.57  E-value=0.077  Score=45.53  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|+.++|||||+.+++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~   26 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYT   26 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            36899999999999999999994

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.56  E-value=0.074  Score=45.49  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+.++|+++|+.++|||||+.+|+
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~   33 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFV   33 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CccceEEEEECcCCCCHHHHHHHHH
Confidence            4457899999999999999999994

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.54  E-value=0.074  Score=45.99  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=21.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~   39 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFN   39 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHh
Confidence            457999999999999999999994

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.46  E-value=0.081  Score=46.00  Aligned_cols=24  Identities=33%  Similarity=0.317  Sum_probs=21.4

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+|+
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~   41 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFC   41 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHH
Confidence            447999999999999999999994

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.38  E-value=0.082  Score=44.93  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.++|+++|+.++|||||+.+|+
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999999994

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.30  E-value=0.096  Score=45.06  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++|+.++|||||+.+|+
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~   31 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFI   31 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHH
Confidence            347899999999999999999994

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.26  E-value=0.085  Score=46.62  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...++|+++|+.++|||||+.+|+
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHH
Confidence            447999999999999999999994

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.18  E-value=0.095  Score=45.42  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++..++|+++|..++|||||+.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhc
Confidence            45589999999999999999999943

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.15  E-value=0.088  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|+.++|||||+.+|++
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcC
Confidence            4478999999999999999999954

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.05  E-value=0.098  Score=46.80  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++.++|+++|..++|||||+.+|+
T Consensus        30 ~~~~~~ki~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           30 PGVRSVKVVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             --CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcceEEEEEECcCCCCHHHHHHHHH
Confidence            34558999999999999999999994

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.01  E-value=0.087  Score=46.38  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+..++|+++|+.++|||||+.+|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            34479999999999999999999943

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=90.95  E-value=0.11  Score=45.17  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...+|+++|+.++|||||+.+|+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999999994

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=90.91  E-value=0.084  Score=45.31  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=21.2

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|+.++|||||+.+++
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHH
Confidence            37899999999999999999994

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.87  E-value=0.095  Score=45.29  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.++|+++|+.++|||||+.+|+
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~   42 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFS   42 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHh
Confidence            347899999999999999999994

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=90.86  E-value=0.11  Score=43.75  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|+.++|||||+.+|+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~   24 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHH
Confidence            5899999999999999999994

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=90.84  E-value=0.087  Score=46.57  Aligned_cols=23  Identities=39%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +++++|..++|||||...|++.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999996643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=90.75  E-value=0.11  Score=46.54  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..+|+++|+.++|||||+.+|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            578999999999999999999654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=90.72  E-value=0.1  Score=44.48  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|+++|+.++|||||+.+|++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999954

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.67  E-value=0.11  Score=45.29  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=22.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+.++|+++|+.++|||||+.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhc
Confidence            44578999999999999999999943

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.63  E-value=0.1  Score=45.64  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|+.++|||||+.+|++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3478999999999999999999943

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.59  E-value=0.12  Score=45.47  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            447899999999999999999993

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.49  E-value=0.1  Score=45.47  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.+..++|+++|+.++|||||+.++++
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhc
Confidence            455689999999999999999999943

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.41  E-value=0.11  Score=46.04  Aligned_cols=25  Identities=24%  Similarity=0.205  Sum_probs=20.9

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +++.++|+++|+.++|||||+.+++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~   51 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYT   51 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHH
Confidence            4558999999999999999999994

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.37  E-value=0.11  Score=45.58  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++..+|+++|+.++|||||+.+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            446799999999999999999994

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=90.36  E-value=0.11  Score=49.07  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..|++++|..++|||||+..|++.+
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3689999999999999999997654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=90.29  E-value=0.11  Score=46.16  Aligned_cols=24  Identities=25%  Similarity=0.218  Sum_probs=21.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...++|+++|+.++|||||+.+|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~   46 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYT   46 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHh
Confidence            347899999999999999999994

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=90.29  E-value=0.13  Score=45.37  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=21.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|..++|||||+.+|++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHh
Confidence            4489999999999999999999943

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.22  E-value=0.11  Score=45.04  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.++|+++|+.++|||||+.+|++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHc
Confidence            468999999999999999999943

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=90.21  E-value=0.076  Score=47.31  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+..++|+++|+.++|||||+.+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~   32 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVL   32 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCT
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHh
Confidence            4458999999999999999999994

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=90.16  E-value=0.11  Score=45.49  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++.++|+++|+.++|||||+.+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~   41 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYT   41 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHH
Confidence            4458999999999999999999994

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=90.15  E-value=0.15  Score=45.08  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++.++|+++|+.++|||||+.+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~   30 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYT   30 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            457999999999999999999994

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=90.10  E-value=0.11  Score=44.68  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=12.4

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...++|+++|+.++|||||+.+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~   29 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFS   29 (183)
T ss_dssp             SEEEEEEEECCCCC----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            347899999999999999999994

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.08  E-value=0.11  Score=44.78  Aligned_cols=25  Identities=28%  Similarity=0.058  Sum_probs=21.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+..++|+++|+.++|||||+..|.
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~   35 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIY   35 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHH
Confidence            3447999999999999999996663

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.07  E-value=0.1  Score=45.35  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.++|+++|+.++|||||+.+|+
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~   42 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLK   42 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            347899999999999999999994

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.04  E-value=0.12  Score=44.84  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.++|+++|+.++|||||+.+|++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999999999943

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.02  E-value=0.14  Score=45.08  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|+.++|||||+.+|++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999999999943

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.99  E-value=0.13  Score=45.83  Aligned_cols=26  Identities=27%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++...+|+++|+.++|||||+.+|++
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhc
Confidence            34478999999999999999999953

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=89.95  E-value=0.094  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|+++|+.++|||||..+|++
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            56899999999999999999954

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=89.85  E-value=0.14  Score=45.68  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..-|+++|..++|||||+..|.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=89.84  E-value=0.12  Score=43.27  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++|+++|+.++|||||+.+++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~   21 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLK   21 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999994

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=89.75  E-value=0.13  Score=44.91  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|+.++|||||+.+|+
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999999993

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=89.74  E-value=0.17  Score=43.87  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+..++|+++|..++|||||+.+++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHh
Confidence            3557899999999999999999993

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.71  E-value=0.14  Score=45.40  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||+.+|++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            68999999999999999999943

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=89.71  E-value=0.13  Score=48.16  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||..+|++
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC
Confidence            368999999999999999999964

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.68  E-value=0.11  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=21.7

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||+.++++
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999999943

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=89.48  E-value=0.14  Score=44.09  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++|+++|+.++|||||+.++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999943

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=89.37  E-value=0.14  Score=44.00  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .+|+++|..++||||++..|.+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999996643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=89.35  E-value=0.15  Score=44.69  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||+.+|++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999999943

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=89.31  E-value=0.14  Score=44.52  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      --++++|..++|||||++.|++.+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            347899999999999999997765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=89.11  E-value=0.16  Score=43.99  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++|..++|||||+.+|++
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4468999999999999999999954

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=89.09  E-value=0.14  Score=45.09  Aligned_cols=22  Identities=27%  Similarity=0.228  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -|+++|..++|||||+..|++.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4799999999999999999653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=89.03  E-value=0.16  Score=44.64  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .+.|+++|..++|||||+.+|++.
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            578999999999999999999653

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=89.02  E-value=0.19  Score=43.25  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|..++||||++..|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            457899999999999999999553

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.02  E-value=0.19  Score=43.34  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...+|+++|+.++|||||+.+|++
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999943

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.01  E-value=0.18  Score=44.87  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|..++|||||+.+|++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHh
Confidence            3478999999999999999999943

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=88.93  E-value=0.18  Score=44.53  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++..+|+++|+.++|||||+.+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHh
Confidence            346789999999999999999993

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=88.89  E-value=0.15  Score=45.68  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -++++|..++|||||...|++.+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            36899999999999999997643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.73  E-value=0.17  Score=44.54  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=20.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.++|+++|+.++|||||+.+|+
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~   41 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFV   41 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHH
Confidence            346899999999999999999994

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=88.71  E-value=0.17  Score=47.50  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=20.3

Q ss_pred             eeeEEeeecccCCChhhhhHH
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l  114 (412)
                      .+||+++|+.++|||||+.+|
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L   28 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSL   28 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHH
Confidence            689999999999999999998

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=88.70  E-value=0.21  Score=42.61  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=22.2

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+.++|+++|..++|||||+.++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999999943

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=88.52  E-value=0.2  Score=43.68  Aligned_cols=27  Identities=22%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++...++|+++|..++|||||+.++++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHh
Confidence            345589999999999999999999943

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=88.41  E-value=0.18  Score=44.70  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .-.|+++|-.++||||++..|.+.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999996543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=88.39  E-value=0.21  Score=44.03  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||+.++++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999999943

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=88.29  E-value=0.2  Score=48.06  Aligned_cols=23  Identities=22%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+++||.++|||||+.+|++
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g   29 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLG   29 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            56799999999999999999943

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=88.26  E-value=0.19  Score=42.35  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++|+++|..++|||||+.+++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999994

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=88.20  E-value=0.2  Score=44.97  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|+.++|||||+.+|++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhc
Confidence            3478999999999999999999943

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=88.20  E-value=0.2  Score=41.72  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+|+++|..++|||||+.++.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999943

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.12  E-value=0.19  Score=43.69  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..++|+++|+.++|||||+.+|++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~   45 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYAD   45 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhc
Confidence            468999999999999999999943

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=88.04  E-value=0.22  Score=43.93  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.5

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++|+.++|||||+.+|+
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~   50 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFK   50 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHh
Confidence            337899999999999999999994

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=87.97  E-value=0.21  Score=44.21  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++|..++||||++..|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999976

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=87.87  E-value=0.24  Score=43.17  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -.|+++|..++||||++..|++.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=87.78  E-value=0.25  Score=43.07  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=21.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      +...|+++|..++||||++..|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=87.73  E-value=0.22  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..|+++|..++||||++..|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=87.72  E-value=0.23  Score=43.68  Aligned_cols=23  Identities=26%  Similarity=0.156  Sum_probs=20.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..|+++|..++||||++..|.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999553

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=87.64  E-value=0.24  Score=42.66  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +...|+++|..++|||||..+|++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            356799999999999999999953

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=87.57  E-value=0.25  Score=43.97  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+..++|+++|..++|||||+.++++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc
Confidence            34579999999999999999999943

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=87.53  E-value=0.12  Score=45.14  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=7.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +..++|+++|+.++|||||+.+|+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~   41 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFT   41 (208)
T ss_dssp             EEEEEEEEC---------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHH
Confidence            347899999999999999999994

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=87.50  E-value=0.2  Score=45.79  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        33 ~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.33  E-value=0.11  Score=45.82  Aligned_cols=25  Identities=24%  Similarity=0.205  Sum_probs=22.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ++..++|+++|+.++|||||+.+++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~   51 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYT   51 (204)
Confidence            3558999999999999999999993

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=87.44  E-value=0.22  Score=43.63  Aligned_cols=22  Identities=41%  Similarity=0.649  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      +|+++|..++||||++..|.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999553

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=87.41  E-value=0.19  Score=49.47  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..++|+++|+.++|||||+.+|.
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~   58 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLF   58 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHh
Confidence            36899999999999999999983

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=87.40  E-value=0.23  Score=47.04  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|+.++|||||+.+|++.
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCC
Confidence            457999999999999999999654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=87.32  E-value=0.27  Score=43.94  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ...+|+++|+.++|||||+.+++..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999996554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=87.28  E-value=0.28  Score=42.95  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..+.|+++|..++|||||+.++++.
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3678999999999999999999553

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=87.11  E-value=0.32  Score=42.32  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=22.8

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.+.++|+++|..++|||||+.++++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            45589999999999999999999943

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=86.98  E-value=0.26  Score=47.55  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=22.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++..-|+++|..++|||||+..|.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            335678999999999999999997654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=86.93  E-value=0.29  Score=42.93  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|+++|..++||||++..|..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999965

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=86.92  E-value=0.26  Score=43.71  Aligned_cols=25  Identities=36%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      --+|+++|-.++||||++..|.+.+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3478999999999999999996544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=86.83  E-value=0.23  Score=44.24  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=19.1

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -++++|..++|||||+..|++
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999999965

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=86.62  E-value=0.25  Score=41.68  Aligned_cols=20  Identities=20%  Similarity=0.198  Sum_probs=18.5

Q ss_pred             eeEEeeecccCCChhhhhHH
Q psy9643          95 CNIGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l  114 (412)
                      ..|++.|-.++||||++..|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=86.58  E-value=0.25  Score=44.28  Aligned_cols=24  Identities=33%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..|+++|..++||||++..|.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999996543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=86.52  E-value=0.26  Score=42.69  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=21.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..+|+++|-.++||||++..|...+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999996543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=86.52  E-value=0.23  Score=45.77  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        34 ~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            5899999999999999997754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=86.50  E-value=0.23  Score=45.54  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        37 ~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           37 LAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999997643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=86.48  E-value=1.1  Score=48.60  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|+..+|||||..+|++.
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~   74 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGR   74 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            346899999999999999999774

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=86.44  E-value=0.29  Score=47.94  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=24.1

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..+....|+++|+.++|||||+.+|+..+
T Consensus        75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           75 DSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             GCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             hcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34456789999999999999999996554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=86.44  E-value=0.26  Score=43.08  Aligned_cols=21  Identities=10%  Similarity=0.283  Sum_probs=18.9

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -++++|..++|||||+..|.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999955

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=86.27  E-value=0.27  Score=42.04  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -||++.|-.++||||++..|...+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            389999999999999999995533

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=86.25  E-value=0.24  Score=46.25  Aligned_cols=23  Identities=39%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        36 ~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           36 TLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            58999999999999999987543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=86.24  E-value=0.29  Score=43.80  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|.+|++.|-.++||||++..|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999954

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=86.16  E-value=0.28  Score=41.61  Aligned_cols=22  Identities=27%  Similarity=0.058  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .|+++|-.++||||++..|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=85.78  E-value=0.37  Score=45.98  Aligned_cols=27  Identities=22%  Similarity=0.065  Sum_probs=22.3

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++..-|+|.|..++|||||+..|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344667899999999999999998543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=85.74  E-value=0.33  Score=44.56  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .-|+++|-.++|||||+..|.+.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999996644

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=85.53  E-value=0.35  Score=44.66  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|++.|-.++||||++..|..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999954

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=85.50  E-value=0.29  Score=42.45  Aligned_cols=18  Identities=28%  Similarity=0.394  Sum_probs=16.3

Q ss_pred             EEeeecccCCChhhhhHH
Q psy9643          97 IGTIGHVDHGKTTLTAAI  114 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l  114 (412)
                      ++++|..++|||||...+
T Consensus        12 ~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           12 VVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            589999999999999965

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=85.46  E-value=0.3  Score=43.17  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..|+++|-.++||||++..|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999554

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=85.46  E-value=0.28  Score=45.28  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        34 ~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           34 VAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=85.41  E-value=0.38  Score=46.75  Aligned_cols=27  Identities=33%  Similarity=0.363  Sum_probs=22.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +...-|+++|-.++||||++..|.+.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678999999999999999996654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=85.41  E-value=0.29  Score=45.28  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||.+.|++.+
T Consensus        35 ~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999997754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=85.38  E-value=0.28  Score=46.20  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        40 ~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            5899999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=85.28  E-value=0.29  Score=45.93  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        35 ~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=85.25  E-value=0.29  Score=45.25  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -++++|..++|||||...|++.+
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999997753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=85.22  E-value=0.31  Score=45.22  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        27 ~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999997754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=85.21  E-value=0.29  Score=45.97  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        36 ~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           36 LLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            5899999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=85.06  E-value=0.38  Score=43.59  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        25 ~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           25 VFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=85.05  E-value=0.32  Score=44.02  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -++++|..++|||||+..|++.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3689999999999999999653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=85.03  E-value=0.3  Score=45.75  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        49 ~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           49 CALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhccC
Confidence            5899999999999999997743

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=84.98  E-value=0.36  Score=42.23  Aligned_cols=28  Identities=14%  Similarity=0.153  Sum_probs=20.8

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...+..++|+++|..++|||||+.++++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHh
Confidence            3455589999999999999999988743

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=84.96  E-value=0.49  Score=41.89  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|++.|-.++||||++..|.+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999955

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=84.81  E-value=0.31  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        37 ~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            5899999999999999998755

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=84.74  E-value=0.42  Score=41.78  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..+|+++|-.++||||++..|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            458999999999999999999654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=84.72  E-value=0.42  Score=41.34  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+++|-.++||||++..|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=84.69  E-value=0.34  Score=46.42  Aligned_cols=26  Identities=27%  Similarity=0.249  Sum_probs=22.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ..-|+++|..++|||||+..|.+.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45689999999999999999977543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=84.68  E-value=0.37  Score=42.04  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=18.9

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+++|..++||||++..|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999964

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=84.64  E-value=0.37  Score=44.91  Aligned_cols=21  Identities=43%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++|+.++|||||..+|++
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            689999999999999999954

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=84.61  E-value=0.33  Score=45.16  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        38 ~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           38 IGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=84.55  E-value=0.38  Score=43.15  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +..+|+++|-.++||||++..|...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999996543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=84.42  E-value=0.35  Score=43.08  Aligned_cols=21  Identities=29%  Similarity=0.215  Sum_probs=18.8

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus         4 i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            4 VFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHHhh
Confidence            689999999999999999654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=84.40  E-value=0.34  Score=45.22  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           29 LHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            5899999999999999997754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=84.35  E-value=0.46  Score=41.21  Aligned_cols=24  Identities=42%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|-.++||||++..|...
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=84.10  E-value=0.36  Score=44.00  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        38 ~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=84.07  E-value=0.42  Score=42.65  Aligned_cols=25  Identities=28%  Similarity=0.583  Sum_probs=21.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|..++|||||+.++++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhc
Confidence            3478999999999999999999943

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=83.72  E-value=0.48  Score=41.20  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=21.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ...|++.|-.++||||++..|...+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999995433

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=83.70  E-value=0.39  Score=44.64  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        32 ~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           32 HALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            589999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=83.65  E-value=0.38  Score=45.28  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        53 ~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Confidence            5899999999999999997754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=83.64  E-value=0.38  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        44 ~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=83.63  E-value=0.49  Score=47.84  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..|++++|..++|||||+..|++.
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCc
Confidence            578999999999999999999765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=83.63  E-value=0.42  Score=40.61  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++|++.|-.++||||++..|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999553

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=83.63  E-value=0.41  Score=41.23  Aligned_cols=23  Identities=48%  Similarity=0.655  Sum_probs=20.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +|+++|-.++||||++..|...+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            68999999999999999996543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=83.58  E-value=0.41  Score=42.63  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++|++.|-.++||||++..|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=83.49  E-value=0.42  Score=42.74  Aligned_cols=23  Identities=30%  Similarity=0.199  Sum_probs=19.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..-|+++|-.++|||||+..|.+
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            34578999999999999999954

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=83.45  E-value=0.4  Score=46.28  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhccccc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLMEGM  122 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~~~~  122 (412)
                      .++++|..++|||||+..|++.+ .|.
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~-~G~  153 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL-GGS  153 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH-TCE
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc-Cce
Confidence            46899999999999999998754 543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=83.45  E-value=0.45  Score=40.67  Aligned_cols=22  Identities=32%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..|++.|..++||||++.+|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4688999999999999999964

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=83.39  E-value=0.57  Score=42.11  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+|+++|..++|||||+.+|++
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999999943

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=83.32  E-value=0.5  Score=40.85  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|-.++||||++..|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=83.29  E-value=0.44  Score=44.91  Aligned_cols=23  Identities=39%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|+.++|||||..+|++
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            46899999999999999999964

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=83.25  E-value=1.3  Score=44.89  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=36.2

Q ss_pred             ecCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643           6 IDAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE   47 (412)
Q Consensus         6 ~d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~   47 (412)
                      +|+.  |++.++.++.|++++|.++||+.++.|++..||+...+
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n  198 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN  198 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence            3884  67888899999999999999987789999999987753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=83.13  E-value=0.56  Score=45.84  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +...|+++|..++|||||+.+|++.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46678999999999999999997643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=83.09  E-value=0.44  Score=43.43  Aligned_cols=22  Identities=23%  Similarity=0.149  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -++++|..++|||||+..|++.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5689999999999999999664

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=83.06  E-value=0.44  Score=42.47  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++|++.|-.++||||++..|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=83.05  E-value=0.66  Score=42.82  Aligned_cols=25  Identities=28%  Similarity=0.210  Sum_probs=21.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ...|.++|..++||||++..|...+
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4678999999999999999996543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=82.99  E-value=0.42  Score=45.11  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        48 ~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           48 TALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999997754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=82.88  E-value=0.43  Score=44.55  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        34 ~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           34 LAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999997754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=82.84  E-value=0.42  Score=45.32  Aligned_cols=22  Identities=27%  Similarity=0.093  Sum_probs=19.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        50 ~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            5899999999999999998754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=82.80  E-value=0.46  Score=43.50  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=19.4

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      -.|+++|..++||||++..|+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999997

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=82.78  E-value=0.67  Score=40.76  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=20.8

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|++.|-.++||||++..|...
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=82.72  E-value=0.45  Score=43.05  Aligned_cols=20  Identities=20%  Similarity=0.147  Sum_probs=14.4

Q ss_pred             eEEeeecccCCChhhhhHHh
Q psy9643          96 NIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~  115 (412)
                      -|+++|-.++|||||+..|.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999996

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=82.69  E-value=0.6  Score=41.18  Aligned_cols=23  Identities=22%  Similarity=0.088  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|++.|-.++||||++..|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999999954

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=82.60  E-value=0.46  Score=45.40  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||.+.|++.+
T Consensus        67 ~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           67 LAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            5899999999999999997754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=82.55  E-value=0.28  Score=43.08  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++++|..++|||||+..|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999664

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=82.49  E-value=0.55  Score=43.88  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|..++|||||+.+|++.
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCC
Confidence            468999999999999999999654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=82.40  E-value=0.6  Score=41.43  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..-|+++|-.++||||++..|.+.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999997644

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=82.38  E-value=0.48  Score=41.68  Aligned_cols=21  Identities=29%  Similarity=0.265  Sum_probs=18.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -|+++|..++|||||+.+|..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999943

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=82.38  E-value=0.63  Score=46.45  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=22.5

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -++...|+++|+.++|||||..+|++
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            34467899999999999999999965

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=82.27  E-value=0.53  Score=41.35  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...+.|+++|..++|||||+.+++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHH
Confidence            347899999999999999999994

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=82.17  E-value=0.55  Score=40.55  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             eeEEeeecccCCChhhhhHHhhhcc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +| +++|..++||||+..+|...++
T Consensus        28 ~~-~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FT-AIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EE-EEEECTTSSHHHHHHHHHHHTT
T ss_pred             cE-EEECCCCCCHHHHHHHHHHHHc
Confidence            44 6999999999999999976554

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=82.05  E-value=0.53  Score=40.74  Aligned_cols=21  Identities=29%  Similarity=0.210  Sum_probs=18.9

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|++.|-.++||||++..|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999954

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=82.01  E-value=0.6  Score=40.23  Aligned_cols=23  Identities=26%  Similarity=0.125  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .|++.|-.++||||++..|...+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999996543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=81.98  E-value=0.55  Score=45.61  Aligned_cols=23  Identities=30%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -+++++|..++|||||...|++.
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=81.98  E-value=0.56  Score=40.21  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=20.5

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..|+++|-.++||||++.+|...+
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            368899999999999999996543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=81.96  E-value=0.55  Score=40.37  Aligned_cols=23  Identities=22%  Similarity=0.121  Sum_probs=16.0

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ..|++.|..++||||++..|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=81.92  E-value=0.57  Score=43.33  Aligned_cols=22  Identities=32%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...|+++|..++||||++..|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999999996

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=81.84  E-value=0.62  Score=41.16  Aligned_cols=25  Identities=36%  Similarity=0.501  Sum_probs=21.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .-.|+++|-.++||||+...|.+.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999996654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=81.76  E-value=0.62  Score=41.12  Aligned_cols=23  Identities=22%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|++.|-.++||||++..|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999954

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=81.73  E-value=0.57  Score=40.40  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..|++.|-.++||||++..|...+
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999996544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=81.55  E-value=0.64  Score=41.51  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|++.|-.++||||++..|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999954

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=81.46  E-value=0.51  Score=46.55  Aligned_cols=21  Identities=38%  Similarity=0.651  Sum_probs=19.1

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+++|+.++|||||..+|++
T Consensus       181 ~V~lvG~~naGKSTLln~L~~  201 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTG  201 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            489999999999999999954

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=81.38  E-value=0.57  Score=48.39  Aligned_cols=25  Identities=28%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ..||+++|..+||||||...|++.+
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3469999999999999999996543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=81.24  E-value=0.61  Score=40.28  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..|+++|-.++||||++..|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999954

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=81.23  E-value=0.69  Score=40.51  Aligned_cols=25  Identities=28%  Similarity=0.182  Sum_probs=21.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ...|++.|-.++||||++..|...+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999996543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=81.13  E-value=0.55  Score=40.59  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhcc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      .-++++.|..++|||||+.++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999976553

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=81.10  E-value=0.71  Score=46.39  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...++|+++|..++|||||+.+|++
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g  202 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILN  202 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhC
Confidence            3468999999999999999999954

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=81.01  E-value=0.75  Score=40.50  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ...|+++|-.++||||++..|...
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=80.79  E-value=0.62  Score=41.46  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.8

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -++++|..++|||||+..|++
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999965

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=80.69  E-value=0.59  Score=43.93  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        49 ~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           49 HAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            589999999999999999885

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=80.66  E-value=0.66  Score=41.40  Aligned_cols=23  Identities=26%  Similarity=0.174  Sum_probs=20.1

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++|++.|-.++||||++..|...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=80.64  E-value=0.7  Score=40.53  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..|++.|-.++||||++..|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999999954

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=80.45  E-value=0.71  Score=46.44  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=22.2

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ...++++|..++|||||+..|++.+
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            5589999999999999999998754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=80.39  E-value=0.66  Score=44.31  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.9

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|..++|||||+.+|.+
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            57889999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=80.19  E-value=0.63  Score=39.59  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .|++.|-.++||||++..|...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999553

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=80.13  E-value=0.65  Score=40.84  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=18.8

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -++++|..++|||||+.+|...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4688999999999999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d3pnpa_	284	c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP	6e-92
d1vmka_	265	c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP	9e-78
d1g2oa_	262	c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP	2e-77
d1qe5a_	266	c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP	2e-70
d1cb0a_	273	c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phos	3e-57
d1v4na_	266	c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phos	8e-49
d1odka_	234	c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP	1e-13
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	4e-12
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	1e-08
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	4e-12
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	1e-11
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	2e-04
d1f60a3	239	c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N	1e-11
d1jnya3	224	c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N	3e-10
d1kk1a3	195	c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su	3e-10
d1r5ba3	245	c.37.1.8 (A:215-459) Eukaryotic peptide chain rele	2e-09
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	2e-08
d1vhwa_	237	c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP	9e-08
d1ybfa_	246	c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetai	1e-07
d1zunb3	222	c.37.1.8 (B:16-237) Sulfate adenylate transferase	2e-07
d2bv3a2	276	c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t	8e-07
d1n0ua2	341	c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-	1e-06
d1jysa_	230	c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhom	1e-06
d1t8sa_	477	c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [	6e-06
d2dy1a2	267	c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t	1e-05
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	6e-05
d2ac7a1	231	c.56.2.1 (A:2-232) Purine nucleoside phosphorylase	4e-04

>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  276 bits (707), Expect = 6e-92
 Identities = 149/282 (52%), Positives = 193/282 (68%)

Query: 122 MLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVST 181
           M   YTYE  Q  AK+LL     RP++ +ICGSGL  + + +T    F Y  IP FP ST
Sbjct: 1   MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPEST 60

Query: 182 VPGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGL 241
           VPGH G+LVFG++NG   + MQGRFH YEGYP WK   P+RV +L+GV  L+ TNAAGGL
Sbjct: 61  VPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGL 120

Query: 242 NPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD 301
           NP++EVGDIM+I+DHINL GF+G NPL G NE+RFG RFP M+ AY++ +R       + 
Sbjct: 121 NPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQ 180

Query: 302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSL 361
           +     ++EG Y ++GGPNFETVAE  +LR  G DAVGMSTV EVI A HCG+ V  FSL
Sbjct: 181 MGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL 240

Query: 362 ITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYI 403
           ITNK + D +   +ANHEEV++AGK     ++  V+ +++ I
Sbjct: 241 ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASI 282

>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Length = 265

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Thermotoga maritima [TaxId: 2336]

 Score =  239 bits (611), Expect = 9e-78
 Identities = 107/273 (39%), Positives = 154/273 (56%), Gaps = 12/273 (4%)

Query: 128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKG 187
            + I+    F+ +  ++ P I II GSG     + + D  I  Y  IP+FP  TV GH G
Sbjct: 2   MKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSG 61

Query: 188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEV 247
           +LVFG I+  P+M M GRFH YEG+     A P+ + K VGV  ++ TNAAG +NP+++ 
Sbjct: 62  KLVFGRISDKPVMIMAGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKP 121

Query: 248 GDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSI 307
           G+I++++D IN   F   NPL G N+++ GPRFP M+   + +         R +     
Sbjct: 122 GEIILVRDIIN---FMFRNPLRGPNDEKIGPRFPDMSSVVDPEWA-------RKIQERLS 171

Query: 308 VKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV 367
           +KEGVY  + GP++ET AE+ +    G D VGMSTV EVI A HCG+ V  FS +TN   
Sbjct: 172 LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAA 231

Query: 368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
                H   +HEEV++  K+    I+  +T  V
Sbjct: 232 --GITHGRLSHEEVVRTTKMAQGKIEKALTTAV 262

>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Length = 262

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  238 bits (609), Expect = 2e-77
 Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 20/276 (7%)

Query: 128 YELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSI-TDRHIFPYDTIPYFPVSTVPGH 185
            EL +  A+ + D   I    + ++ GSG      ++ +   + P   +P F   T  GH
Sbjct: 3   DELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGH 62

Query: 186 KGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDY 245
            G+L+   I    ++ + GR H YEG+ L     P+R  +  G   ++ TNAAGGL  D 
Sbjct: 63  AGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADL 122

Query: 246 EVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMS 305
           +VG  ++I DH+NL                 G  F  +  AY+ +LR             
Sbjct: 123 QVGQPVLISDHLNLTA----------RSPLVGGEFVDLTDAYSPRLRELARQSDPQ---- 168

Query: 306 SIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNK 365
             + EGVY+ + GP++ET AE+ ML+  G D VGMSTVHE I A   G  V   SL+TN 
Sbjct: 169 --LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNL 226

Query: 366 CVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVS 401
                      +H EV+ AG      + +++  +++
Sbjct: 227 A--AGITGEPLSHAEVLAAGAASATRMGALLADVIA 260

>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Cellulomonas sp. [TaxId: 40001]

 Score =  221 bits (563), Expect = 2e-70
 Identities = 78/278 (28%), Positives = 122/278 (43%), Gaps = 23/278 (8%)

Query: 125 SYTYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITD-RHIFPYDTIPYFPVSTV 182
           +  + + ++ A  +  +  +    + ++ GSG    A+ + +     P   IP F   T 
Sbjct: 8   TDPFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSSVTR 67

Query: 183 PGHKGQLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLN 242
                 +     +    + +  R H YEG  +      +R     G   L+ TN  GGLN
Sbjct: 68  SIR---VERADGSVRHALVLGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLN 124

Query: 243 PDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDL 302
            ++  G  +++ DHINL      +PL        GP F  +   Y+ +LR     +    
Sbjct: 125 QEWGAGTPVLLSDHINLT---ARSPL-------EGPTFVDLTDVYSPRLRELAHRVDPT- 173

Query: 303 NMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLI 362
                + EGVY+   GP++ET AE+ M  I G D VGMST  E I A HCG+ V   SL+
Sbjct: 174 -----LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLV 228

Query: 363 TNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIV 400
           TN            +H EVI+AG+  GP I +++  I 
Sbjct: 229 TNLA--AGISPTPLSHAEVIEAGQAAGPRISALLADIA 264

>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  186 bits (474), Expect = 3e-57
 Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 11/267 (4%)

Query: 146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGR 205
            KIGII G+GL      I +     Y   P+   S        L+ G I  +  + +   
Sbjct: 2   VKIGIIGGTGLDDPE--ILEGRTEKYVDTPFGKPS------DALILGKIKNVDCVLLARH 53

Query: 206 FHYYEGYPLW-KCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG 264
              +   P        I  +K  G TH++ T A G L  + + GDI+II   I+      
Sbjct: 54  GRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRP 113

Query: 265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETV 324
            +   G +    G    PM + +  + R   ++ A+ L +     +G    I GP F + 
Sbjct: 114 QSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLR-CHSKGTMVTIEGPRFSSR 172

Query: 325 AELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQA 384
           AE  M R  G D + M+TV EV+ A   G+   + ++ T+      +     + + V++ 
Sbjct: 173 AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDC-WKEHEEAVSVDRVLKT 231

Query: 385 GKLRGPMIKSMVTRIVSYIGEHQLNST 411
            K      KS++   +  IG  + + T
Sbjct: 232 LKENANKAKSLLLTTIPQIGSTEWSET 258

>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score =  164 bits (417), Expect = 8e-49
 Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 21/266 (7%)

Query: 145 RPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPI--MCM 202
           +  IGII GSGL      +T+       T PY   S        ++ G + G  +  +  
Sbjct: 2   KASIGIIGGSGLYDP-QILTNVKEIKVYT-PYGEPS------DNIILGELEGRKVAFLPR 53

Query: 203 QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGF 262
            GR H    + +   A     +K +GV  ++A +A G L  DY+ GD ++    I++   
Sbjct: 54  HGRGHRIPPHKINYRANI-WALKSLGVKWVIAVSAVGSLRLDYKPGDFVVPNQFIDMTKG 112

Query: 263 AGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE 322
                      D        M   + + LR+  LD A+DL + +   +G Y  I GP F 
Sbjct: 113 RTYTFF-----DGPTVAHVSMADPFCEHLRSIILDSAKDLGI-TTHDKGTYICIEGPRFS 166

Query: 323 TVAELNML-RICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEV 381
           T AE  +   +   D +GM+ V EV  A    M  +   ++T+    D         EEV
Sbjct: 167 TRAESIVWKEVFKADIIGMTLVPEVNLACEAEMCYSVIGMVTD---YDVFADIPVTAEEV 223

Query: 382 IQAGKLRGPMIKSMVTRIVSYIGEHQ 407
            +        +K ++  ++  + E  
Sbjct: 224 TKVMAENTAKVKKLLYEVIRRLPEKP 249

>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Thermus thermophilus [TaxId: 274]

 Score = 67.6 bits (164), Expect = 1e-13
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 19/196 (9%)

Query: 192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIM 251
           GL  G+P+                  A+ +  +  +G   L+    AG  + D   G+++
Sbjct: 50  GLYKGVPVSVQTTGMGTP------SAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELI 103

Query: 252 IIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEG 311
           + +  + L G                        A             R   +    + G
Sbjct: 104 VAQGAVPLDGTTR-------------QYLEGRPYAPVPDPEVFRALWRRAEALGYPHRVG 150

Query: 312 VYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYD 371
           + +        T  E       GV A  M      +     G+   A   ++N+      
Sbjct: 151 LVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRIGDPEL 210

Query: 372 DHAEANHEEVIQAGKL 387
              E   E V +  ++
Sbjct: 211 APPEVLQEGVRRMVEV 226

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 62.7 bits (152), Expect = 4e-12
 Identities = 26/37 (70%), Positives = 28/37 (75%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTY 128
           KPH N+GTIGHVDHGKTTLTAAITK L EG    +  
Sbjct: 1   KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKK 37

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 8   AADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPEIG 54
             D+EM ELVE+E+RELLTE G+KG+E P + GSALCALE ++PE+G
Sbjct: 132 VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELG 178

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 62.7 bits (151), Expect = 4e-12
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 3/145 (2%)

Query: 88  YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPK 147
           + + +P  NIG +GHVDHGKTTL  AIT              +   +        +I   
Sbjct: 2   WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGY---AETNIGVC 58

Query: 148 IGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH 207
                     T     +         +        PGH+  +   L     +        
Sbjct: 59  ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVA 118

Query: 208 YYEGYPLWKCAMPIRVMKLVGVTHL 232
             E +P  +       + ++GV +L
Sbjct: 119 ANEPFPQPQTREHFVALGIIGVKNL 143

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITK 116
           KPH N+GTIGHVDHGKTTLTAA+T 
Sbjct: 1   KPHVNVGTIGHVDHGKTTLTAALTY 25

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 8   AADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKE 50
             D E+ +LVEME+R+LL +  + GDEVP ++GSAL ALE   
Sbjct: 133 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 175

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (150), Expect = 1e-11
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 90  RDKPHCNIGTIGHVDHGKTTLTAAIT 115
           ++K H N+  IGHVD GK+T T  + 
Sbjct: 2   KEKSHINVVVIGHVDSGKSTTTGHLI 27

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 57.9 bits (139), Expect = 3e-10
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGII 151
           KPH N+  IGHVDHGK+TL   +      G +   T +  +  AK          K   +
Sbjct: 1   KPHLNLIVIGHVDHGKSTLVGRLLMDR--GFIDEKTVKEAEEAAK---KLGKESEKFAFL 55

Query: 152 CGSGLSTIADSITDRHIFPYDTIPYFPVSTV--PGHK 186
                      +T    F       +  + +  PGH+
Sbjct: 56  LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHR 92

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSY 126
           +   NIG +GHVDHGKTTLT A+T    +      
Sbjct: 3   QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL 37

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAIT 115
           K H NI  IGHVD GK+TL   I 
Sbjct: 22  KEHVNIVFIGHVDAGKSTLGGNIL 45

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 91  DKPHCNIGTIGHVDHGKTTLTAAITK 116
           D  + N+G  GH+DHGKTTL+  +T+
Sbjct: 2   DFKNINLGIFGHIDHGKTTLSKVLTE 27

>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Vibrio cholerae [TaxId: 666]

 Score = 50.6 bits (120), Expect = 9e-08
 Identities = 28/197 (14%), Positives = 59/197 (29%), Gaps = 20/197 (10%)

Query: 192 GLINGIPIMCMQGRFHYYEGYPLWKCAMPI-RVMKLVGVTHLLATNAAGGLNPDYEVGDI 250
           G   G  I  M    H         C++ +  ++K  GV  ++   + G +N   +V D+
Sbjct: 50  GTYKGRRISVM---GHGMGIPS---CSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDV 103

Query: 251 MIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKE 310
           +I                      R   +        + ++  A  + A+   +   VK 
Sbjct: 104 VIGMGACTDSKVN-----------RIRFKDHDFAAIADYKMVKAAEEAAKARGID--VKV 150

Query: 311 GVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY 370
           G             +  +++   G+  V M        A   G    A   +++   T  
Sbjct: 151 GNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDHIKTGE 210

Query: 371 DDHAEANHEEVIQAGKL 387
              +E       +  ++
Sbjct: 211 QTTSEERQNTFNEMIEI 227

>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: AMP nucleosidase
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 15/170 (8%)

Query: 217 CAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRF 276
            A  + ++  +    ++     GGL  +  +GD ++    I            G + D  
Sbjct: 72  AATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGE---------GTSNDYL 122

Query: 277 GPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNM-LRICGV 335
               P +    +  +  A     ++         G         +E   +    LR    
Sbjct: 123 PEEVPSL---PSFSVLRAISSAIQNKGKDYWT--GTVYTTNRRVWEYDEKFKDYLRSTHA 177

Query: 336 DAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAG 385
             V M T   +       + + A  LI+++ +       E + + V    
Sbjct: 178 SGVDMETATLMTVGFANKIPMGALLLISDRPMFPEGVKTEESDQLVTDNF 227

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 92  KPHCNIGTIGHVDHGKTTLTAAITK 116
           K      T G+VD GK+TL   +  
Sbjct: 7   KEMLRFLTCGNVDDGKSTLIGRLLH 31

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 96  NIGTIGHVDHGKTTLTAAITK 116
           NIG   H+D GKTT T  I  
Sbjct: 8   NIGIAAHIDAGKTTTTERILY 28

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 96  NIGTIGHVDHGKTTLTAAITK 116
           N+  I HVDHGK+TLT ++ +
Sbjct: 19  NMSVIAHVDHGKSTLTDSLVQ 39

>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 39/260 (15%)

Query: 147 KIGIICGSG--LSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG 204
           KIGII      ++ + D I +R          +              G +NG  +  ++ 
Sbjct: 2   KIGIIGAMEEEVTLLRDKIENRQTISLGGCEIY-------------TGQLNGTEVALLKS 48

Query: 205 RFHYYEGYPLWKCAMPIRVMKLV---GVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMG 261
                      K A  +    L+       ++ T +AGGL P  +VGDI++  +      
Sbjct: 49  GIG--------KVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA 100

Query: 262 FAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNF 321
                             F       + +L AA      +LN++  V+  + S     N 
Sbjct: 101 DVTAFGYEYGQLPGCPAGFKA-----DDKLIAAAEACIAELNLN-AVRGLIVSGDAFING 154

Query: 322 ETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDY-DDHAEANHEE 380
                          AV M         H+  +          + ++D  D  +  + +E
Sbjct: 155 SVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVV-----RAISDVADQQSHLSFDE 209

Query: 381 VIQ-AGKLRGPMIKSMVTRI 399
            +  A K    M++S+V ++
Sbjct: 210 FLAVAAKQSSLMVESLVQKL 229

>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: AMP nucleosidase
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 27/211 (12%), Positives = 56/211 (26%), Gaps = 22/211 (10%)

Query: 175 PYFPVSTVPGHKGQLV---FGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTH 231
           P   +S +   K Q+        +G  I  +        G            + ++    
Sbjct: 239 PEEAISDLAWKKHQMPAWHLITADGQGITLVNIGV----GPS--NAKTICDHLAVLRPDV 292

Query: 232 LLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQL 291
            L     GGL     +GD ++   ++             +  D   P    + +A     
Sbjct: 293 WLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV----LPPDIPIPSIAEVQRALYDAT 348

Query: 292 RAATLDIARDLNMSSIVKEGVYSVIGGPNFET--VAELNMLRICGVDAVGMSTVHEVITA 349
           +  +     ++     ++ G        N+E    A      +    A+ M +       
Sbjct: 349 KLVSGRPGEEVKQR--LRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESATIAAQG 406

Query: 350 HHCGMTVTAFSLITNKCVTDYDDHAEANHEE 380
           +   +           CV+D   H E     
Sbjct: 407 YRFRVPYGTL-----LCVSDKPLHGEIKLPG 432

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 96  NIGTIGHVDHGKTTLTAAITK 116
            +  +GH   GKTTLT A+  
Sbjct: 4   TVALVGHAGSGKTTLTEALLY 24

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 97  IGTIGHVDHGKTTLTAAITK 116
           +  +GHVDHGKTTL   I  
Sbjct: 8   VSVLGHVDHGKTTLLDHIRG 27

>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Length = 231

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Bacillus anthracis [TaxId: 1392]

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 17/168 (10%)

Query: 222 RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFP 281
            +++  GV +L+     G +  D +V D++I                           FP
Sbjct: 74  ELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSNMNRL-------------TFP 120

Query: 282 PMNKAY--NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVG 339
             + A   N  L     D   +  +   V+ G          E++  +  L   GV AV 
Sbjct: 121 GFDFAPAANFDLLKKAYDAGTEKGLH--VRVGNVLTADVFYRESMDMVKKLGDYGVLAVE 178

Query: 340 MSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKL 387
           M T      A   G+   +   +++   T  +  +E       +  ++
Sbjct: 179 METTALYTLAAKYGVNALSVLTVSDHIFTGEETTSEERQTTFNEMIEI 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d3pnpa_	284	Purine nucleoside phosphorylase, PNP {Cow (Bos tau	100.0
d1vmka_	265	Purine nucleoside phosphorylase, PNP {Thermotoga m	100.0
d1g2oa_	262	Purine nucleoside phosphorylase, PNP {Mycobacteriu	100.0
d1qe5a_	266	Purine nucleoside phosphorylase, PNP {Cellulomonas	100.0
d1cb0a_	273	5'-deoxy-5'-methylthioadenosine phosphorylase {Hum	100.0
d1v4na_	266	5'-deoxy-5'-methylthioadenosine phosphorylase {Sul	100.0
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.86
d1jysa_	230	5'-Methylthioadenosine/S-Adenosylhomocysteine nucl	99.81
d1odka_	234	Purine nucleoside phosphorylase, PNP {Thermus ther	99.79
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.77
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1vhwa_	237	Purine nucleoside phosphorylase, PNP {Vibrio chole	99.74
d1rxya_	250	Uridine phosphorylase {Escherichia coli [TaxId: 56	99.74
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.73
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1je0a_	234	5'-deoxy-5'-methylthioadenosine phosphorylase {Arc	99.73
d2ac7a1	231	Purine nucleoside phosphorylase, PNP {Bacillus ant	99.71
d1ybfa_	246	AMP nucleosidase {Bacteroides thetaiotaomicron [Ta	99.66
d1q1ga_	243	Putative uridine phosphorylase {Plasmodium falcipa	99.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.55
d1t8sa_	477	AMP nucleosidase {Escherichia coli [TaxId: 562]}	99.48
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.45
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.43
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.35
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.29
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.95
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.9
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.74
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.44
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.15
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.77
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.51
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.23
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.88
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.47
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.81
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.63
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.62
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	93.14
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	92.97
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	92.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.75
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	92.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.48
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	92.2
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.14
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.09
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	91.97
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	91.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.39
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.29
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	91.28
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.26
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	90.84
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	90.68
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.27
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	89.93
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	89.58
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.35
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	89.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	89.0
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.65
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	88.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	88.51
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	88.29
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	88.2
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	87.58
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	87.52
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.46
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	87.23
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	87.21
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.17
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	87.09
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	87.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	86.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	86.85
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	86.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	86.68
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	86.63
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	86.56
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	86.45
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	86.22
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	86.18
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	86.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	86.12
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.04
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	86.03
d1g2912	240	Maltose transport protein MalK, N-terminal domain	85.93
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	85.85
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	85.46
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.38
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	85.38
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	85.01
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.83
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	84.49
d2awna2	232	Maltose transport protein MalK, N-terminal domain	84.25
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	83.92
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	83.86
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	83.86
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	83.49
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	83.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	83.16
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	82.97
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	82.65
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	82.58
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	82.08
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	82.03
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	81.78
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	81.68
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	81.63
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	81.57
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	81.44
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	81.33
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	81.28
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	80.87
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	80.64
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	80.5

>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-66  Score=497.30  Aligned_cols=281  Identities=53%  Similarity=0.948  Sum_probs=251.6

Q ss_pred             chhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec
Q psy9643         124 GSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ  203 (412)
Q Consensus       124 ~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q  203 (412)
                      +.+.+++++++++||+++++..|++|||+||||+++++.+++..+++|+++|+||.++++||+++++.|.++|++|+++|
T Consensus         3 ~~~~~~~~~~~~~~i~~~~~~~p~igII~GSGL~~l~~~i~~~~~i~y~~ip~fp~stv~gh~g~lv~G~~~g~~v~~~~   82 (284)
T d3pnpa_           3 NGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQ   82 (284)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCCCSEEEEECTTCGGGGGGCEEEEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCccHHHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHhhhcCcEEEecccCCCCCCCCcCCCCCCEEEEEECCceEEEeC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCC
Q psy9643         204 GRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPM  283 (412)
Q Consensus       204 gr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~  283 (412)
                      ||.|.|||++|+.+++++++++.+||++||.+|++|++|++++|||+|+++||||++++++.|||.|.+++.++.+|+++
T Consensus        83 gr~H~yeg~~~~~v~~~i~~~~~lGv~~ii~tnavGsl~~~~~pGdlv~~~d~Id~t~~~~~~~~~g~~~~~~~~~~~~~  162 (284)
T d3pnpa_          83 GRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAM  162 (284)
T ss_dssp             SCCCGGGTCCHHHHTHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEHHHHTTCCTTCSSCCTTTCCSSCCC
T ss_pred             CCCcCCCCCCHHHhhhHHHHHHHcCCCeEEEeccccccCccCCccceeeccceeeccccCCCCCccCccccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999988899999999888899999999


Q ss_pred             cccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeee
Q psy9643         284 NKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLIT  363 (412)
Q Consensus       284 ~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VS  363 (412)
                      .++||++||+.+.++|++++....+++|||+++.||+|||+||++++|++|||+||||++||+.+|+++||||++|++||
T Consensus       163 ~~~y~~~lr~~~~~~a~~~~~~~~~~~GvY~~~~GP~fET~AEir~~r~~GaDvVGMS~vPEa~lArelgi~~a~is~VT  242 (284)
T d3pnpa_         163 SDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLIT  242 (284)
T ss_dssp             TTCSCHHHHHHHHHHHHHTTCSSCCEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHhCCccccCceEEEEecCCcccchHHHHHHHHccCCcccCCccHHHHHHHHcCCCEEEEEEEe
Confidence            99999999999999999998874578999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643         364 NKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG  404 (412)
Q Consensus       364 d~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~  404 (412)
                      |+|+|.+++..++||+||++.++++.+++.+++.++|++|+
T Consensus       243 N~A~~~g~~~~~lsheeVl~~~~~~~~~~~~li~~~i~~lP  283 (284)
T d3pnpa_         243 NKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP  283 (284)
T ss_dssp             EEC---------------------CHHHHHHHHHHHGGGSC
T ss_pred             chhhccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99987666778999999999999999999999999999986

>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9e-62  Score=464.03  Aligned_cols=263  Identities=41%  Similarity=0.702  Sum_probs=235.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecceee
Q psy9643         128 YELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQGRFH  207 (412)
Q Consensus       128 ~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qgr~H  207 (412)
                      +++++++++||+++++.+|++|||+||||+++++.+++...++|+++|+|+.++++||+++++.|.++|++|+++|||.|
T Consensus         2 ~~~~~~~~~~i~~~~~~~P~igIIlGSGL~~l~d~~~~~~~i~y~dip~fp~stv~Gh~g~l~~g~~~g~~v~~~~Gr~H   81 (265)
T d1vmka_           2 MKKIEEARTFISERTNLSPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISDKPVMIMAGRFH   81 (265)
T ss_dssp             HHHHHHHHHHHHTTCCCCCSEEEEEC---CTTTTTCEEEEEEEGGGSTTCC--------CEEEEEEETTEEEEEEESCCC
T ss_pred             hHHHHHHHHHHHHhCCCCCCEEEEecCCHHHHHHhhcCcEEEecccCCCCCCCCccCCCCcEEEEEeCCeeEEEeCCCCc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy9643         208 YYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAY  287 (412)
Q Consensus       208 ~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~  287 (412)
                      .||||+++.+++|+|+++.+||++||++|++|++|++++|||+|+++||||+++   .+|+.+.++..++++|++++.+|
T Consensus        82 ~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdlv~~~d~Id~t~---~~p~~~~~~~~~~~~~~~~~~~~  158 (265)
T d1vmka_          82 LYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDIINFMF---RNPLRGPNDEKIGPRFPDMSSVV  158 (265)
T ss_dssp             GGGTCCHHHHHHHHHHHHHHTCCEEEEEEEEEECSTTCCTTCEEEEEEEEECSC---CCTTCSCCCTTTCCSSCCCTTCS
T ss_pred             CCCCCCHHHhhhHHHHHHHcCCCeEEEeccccccCCCCCCCcEEeehhhHhhcC---CCCCCCcccccccccccchHHHH
Confidence            999999999999999999999999999999999999999999999999999987   78888878788899999999999


Q ss_pred             cHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         288 NKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       288 d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      |+.+++.+...     +.  +++|||+++.||+|||+||++++|++|||+||||++||+.+||++||||++|++|||+|+
T Consensus       159 ~~~~~~~~~~~-----~~--~~~GvY~~~~GP~fET~AEi~~~r~~GaDvVGMS~~PEa~lArelg~~~a~is~VTN~aa  231 (265)
T d1vmka_         159 DPEWARKIQER-----LS--LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAA  231 (265)
T ss_dssp             CHHHHHHHHHH-----HC--CEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEEEECT
T ss_pred             hHHHHHhhhcc-----cc--cCCeEEEEecCCccchhhhhhhHhhcCCeecccCccHHHHHHHHCCCCEEEEEEEeeccc
Confidence            99999877654     33  789999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         368 TDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY  402 (412)
Q Consensus       368 ~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~  402 (412)
                      |  .++.++||+||++.+++++.++.++|.++|+.
T Consensus       232 g--~~~~~~theeV~~~~~~~~~~~~~ll~~~I~~  264 (265)
T d1vmka_         232 G--ITHGRLSHEEVVRTTKMAQGKIEKALTTAVEV  264 (265)
T ss_dssp             T--C-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8  46778999999999999999999999999875

>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-61  Score=460.26  Aligned_cols=258  Identities=33%  Similarity=0.555  Sum_probs=240.5

Q ss_pred             hHHHHHHHHHHHhhhcCC-CCceeEeeCcCcccccccc-cCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecc
Q psy9643         127 TYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSI-TDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG  204 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~-e~~~GIi~GsGl~~~~~~~-~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qg  204 (412)
                      .+++.++++++|+++++. .+++|||+||||+++.+.+ +....++|+++|+|+.++++||++++++|.++|++|+++||
T Consensus         2 ~~~~~~eaa~~i~~r~~~~~p~i~iIlGSGL~~~~~~~~~~~~~i~y~diP~fp~stv~gh~g~lv~g~l~g~~v~~~~G   81 (262)
T d1g2oa_           2 PDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAG   81 (262)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCCSEEEEECTTCGGGSGGGCCCSEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHhhcCccEEEEHHHCCCCCCCcccccCCceEEEEECCEEEEEEcC
Confidence            367889999999999985 7999999999998876554 66778999999999999999999999999999999999999


Q ss_pred             eeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCc
Q psy9643         205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMN  284 (412)
Q Consensus       205 r~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~  284 (412)
                      |.|.||||+++.+.+|+|+++.|||++||.+|++|++|++++|||+|+++||||+++   .+|+       +|.+|++++
T Consensus        82 r~H~yeg~~~~~v~~pi~~l~~lGv~~ii~tna~Gsl~~~~~pGdlv~~~d~Id~t~---~~p~-------~g~~~~~~~  151 (262)
T d1g2oa_          82 RIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLTA---RSPL-------VGGEFVDLT  151 (262)
T ss_dssp             CCCGGGTCCHHHHSHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEECSS---CCSC-------CSSCCCCCT
T ss_pred             CCcCCCCCCHHHhhhHHHHHHHcCCCEEEEeccccccchhhcccCccchhhhhcccC---CCCC-------CCCcCCccC
Confidence            999999999999999999999999999999999999999999999999999999987   5554       456799999


Q ss_pred             ccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeec
Q psy9643         285 KAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN  364 (412)
Q Consensus       285 ~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd  364 (412)
                      ++||+.||+.+.++    +..  +++|||+++.||+|||+||++++|.+|||+||||++||+++|+++||||++|++|||
T Consensus       152 ~~y~~~lr~~a~~~----~~~--l~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMStvPEvilArelgm~v~~is~VTN  225 (262)
T d1g2oa_         152 DAYSPRLRELARQS----DPQ--LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTN  225 (262)
T ss_dssp             TSSCHHHHHHHHHH----CTT--CEEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccCHHHHHHHHHh----ccc--cCCeEEEEeeCCCcCcHHHHHHHHhcCCCcccCCccHHHHHHHHCCCCEEEEEEecc
Confidence            99999999877665    444  889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY  402 (412)
Q Consensus       365 ~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~  402 (412)
                      +|+|  .+++++||+||++.++++++++.+++.++|++
T Consensus       226 ~aag--~~~~~~sheeVl~~~~~~~~~~~~ll~~~I~r  261 (262)
T d1g2oa_         226 LAAG--ITGEPLSHAEVLAAGAASATRMGALLADVIAR  261 (262)
T ss_dssp             ECTT--SSCCCCCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9987  57789999999999999999999999999986

>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Cellulomonas sp. [TaxId: 40001]

Probab=100.00  E-value=3.9e-57  Score=430.68  Aligned_cols=255  Identities=30%  Similarity=0.500  Sum_probs=234.6

Q ss_pred             hHHHHHHHHHHHhhhcCC-CCceeEeeCcCcccccccccCc-eeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEecc
Q psy9643         127 TYELIQSIAKFLLDSISI-RPKIGIICGSGLSTIADSITDR-HIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQG  204 (412)
Q Consensus       127 ~~~~~~~~~~~i~~~~~~-e~~~GIi~GsGl~~~~~~~~~~-~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~qg  204 (412)
                      .+++.+++++||+++++. .|++|||+||||+.+++.+++. .+++|+++|+|+.+   +|++++..|...++.++++||
T Consensus        10 ~~~~~~~aa~~i~~~~g~~~p~i~iIlGSGLg~~~~~~~~~~~~i~y~~iP~f~~~---~~~g~l~~~~~~~~~v~~~~G   86 (266)
T d1qe5a_          10 PFLVARAAADHIAQATGVEGHDMALVLGSGWGGAAELLGEVVAEVPTHEIPGFSSV---TRSIRVERADGSVRHALVLGS   86 (266)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCCSEEEECCTTCTTTTTTSCEEEEEEEGGGSTTCCCE---EEEEEEECTTSCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEecCchHHHHHhhcCceEEeEcccCCCCCCc---CcCceEEEeecceeEEEEecc
Confidence            478889999999999985 6899999999999999998665 46999999999865   477788889888999999999


Q ss_pred             eeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCc
Q psy9643         205 RFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMN  284 (412)
Q Consensus       205 r~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~  284 (412)
                      |+|.||||+++++.+|+++++.|||++||.+|++|++|+++++||+|+++||||+++   .+|+.|       +.|.+++
T Consensus        87 R~H~YEG~~~~~v~~pi~~l~~LGv~~ii~tna~Gsl~~~~~pGdlvli~d~Id~t~---~~pl~g-------~~~~~~~  156 (266)
T d1qe5a_          87 RTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHINLTA---RSPLEG-------PTFVDLT  156 (266)
T ss_dssp             CCCGGGSSCHHHHSHHHHHHHHTTCCEEEEEEEEEECCTTSCTTCEEEEEEEEECSS---CCSCCS-------SCCCCCT
T ss_pred             cCcCcCCCCHHHhHHHHHHHHHcCCCeEEEEecccccchhhccccceehhhhhccCC---CCCcCC-------ccccccc
Confidence            999999999999999999999999999999999999999999999999999999987   677754       4688999


Q ss_pred             ccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeec
Q psy9643         285 KAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITN  364 (412)
Q Consensus       285 ~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd  364 (412)
                      .+||+.+++.+.+    .+..  +++|||+++.||+|||+||+++++++|||+||||++||+.+|+++||||++|++|||
T Consensus       157 ~~~~~~l~~~a~~----~~~~--l~~GvY~~~~GP~fET~AEir~~r~~GaDvVGMS~vPEa~lArelgi~~~~is~VTN  230 (266)
T d1qe5a_         157 DVYSPRLRELAHR----VDPT--LPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVTN  230 (266)
T ss_dssp             TSBCHHHHHHHHH----HCTT--CCEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             chhhHHHHHHHHH----hCcc--cCCeEEEEeeCCccccHHHHHHhhhccCcccccCccHHHHHHHHCCCCEEEEEEecc
Confidence            9999999876554    4565  899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9643         365 KCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSY  402 (412)
Q Consensus       365 ~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~  402 (412)
                      +|+|  .+++++||+||++.++++++++.+++.++|++
T Consensus       231 ~aaG--~~~~~~sheeVl~~~~~~~~~~~~ll~~~I~r  266 (266)
T d1qe5a_         231 LAAG--ISPTPLSHAEVIEAGQAAGPRISALLADIAKR  266 (266)
T ss_dssp             ECTT--TCSSCCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9987  57789999999999999999999999999874

>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-54  Score=410.60  Aligned_cols=250  Identities=26%  Similarity=0.387  Sum_probs=220.7

Q ss_pred             CceeEeeCcCcccccccccCceeeecCCCCCccccCCCCCceeEEEEeeCCeEEEEec--ceeeeecCCCCccccH--HH
Q psy9643         146 PKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPGHKGQLVFGLINGIPIMCMQ--GRFHYYEGYPLWKCAM--PI  221 (412)
Q Consensus       146 ~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~~l~~G~~~g~~vv~~q--gr~H~yeg~~~~~v~~--~i  221 (412)
                      .++|||+||||+++ +.+++ ...+|.++|..      .|++.+++|.++|++|++++  ||.|.|++   +.+++  ++
T Consensus         2 v~igiI~GSGL~~~-~~~~~-~~~~~~~tP~g------~~sg~li~G~l~g~~v~~l~rhG~~h~~~~---~~~~~~a~i   70 (273)
T d1cb0a_           2 VKIGIIGGTGLDDP-EILEG-RTEKYVDTPFG------KPSDALILGKIKNVDCVLLARHGRQHTIMP---SKVNYQANI   70 (273)
T ss_dssp             CEEEEEECTTCCCG-GGSEE-EEEECCCBTTB------CCSSCEEEEEETTEEEEEEETTTTTTCCCG---GGCCHHHHH
T ss_pred             ceEEEEeCCCCCcc-hhccc-ceEEeecCcCC------CCCCCEEEEEECCEEEEEEcCCCCCCcCCc---ccccchHHH
Confidence            47999999999986 33333 34566665532      26789999999999999884  88888764   44455  79


Q ss_pred             HHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHH
Q psy9643         222 RVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARD  301 (412)
Q Consensus       222 ~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~  301 (412)
                      |+++.+||+.||++|++|++|++++|||+|+++||||+++.+..+|+.|.++..+|.+|++++++||++||+.+.+++++
T Consensus        71 ~al~~LGv~~li~tnAaGsln~~~~pGdlvii~D~Id~t~~~p~t~~~g~~~~~~g~~~~~~~~~y~~~Lr~~~~~~a~~  150 (273)
T d1cb0a_          71 WALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKK  150 (273)
T ss_dssp             HHHHHTTCSEEEEEEEEEECSTTSCTTCEECCCEEEEECCSCCCCSCSSSCTTSCSEECCCCSSCSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEEEeeehhhhccCCCCCCEEehhhhhccccccccccccCCCcccccccccccccccCHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999998888999999888899999999999999999999999999


Q ss_pred             cCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHH
Q psy9643         302 LNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEV  381 (412)
Q Consensus       302 ~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev  381 (412)
                      .+++ ++++|||+++.||+|||+||+|++|++|||+||||++||+++|+++||+|++|++|||+++|. ...++++|+||
T Consensus       151 ~~~~-~~~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMStvPEvilAre~gl~~~~is~VTN~aag~-~~~~~~sheeV  228 (273)
T d1cb0a_         151 LGLR-CHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWK-EHEEAVSVDRV  228 (273)
T ss_dssp             TTCC-EESCCEEEEECCSSCCCHHHHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEEECTTC------CCCHHHH
T ss_pred             ccee-eeeeeeEEEecCCccccHHHHHHHHHcCCCcccCCccHHHHHHHHcCCcEEeEEEeecCcccc-cCCCCCCHHHH
Confidence            9998 456899999999999999999999999999999999999999999999999999999999874 23467999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Q psy9643         382 IQAGKLRGPMIKSMVTRIVSYIGEHQL  408 (412)
Q Consensus       382 ~~~~~~~~~~~~~ll~~~i~~l~~~~~  408 (412)
                      ++.++++++++.+++.++|++|+.+..
T Consensus       229 ~~~~~~~~~~~~~lv~~~I~~l~~~~~  255 (273)
T d1cb0a_         229 LKTLKENANKAKSLLLTTIPQIGSTEW  255 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999977654

>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=1.3e-52  Score=400.95  Aligned_cols=245  Identities=26%  Similarity=0.355  Sum_probs=214.5

Q ss_pred             CCCceeEeeCcCcccccccccCceeeecCCCCCccccCCCC-CceeEEEEeeCCeEEEEe--cceeeeecCCCCccccHH
Q psy9643         144 IRPKIGIICGSGLSTIADSITDRHIFPYDTIPYFPVSTVPG-HKGQLVFGLINGIPIMCM--QGRFHYYEGYPLWKCAMP  220 (412)
Q Consensus       144 ~e~~~GIi~GsGl~~~~~~~~~~~~~~~~~~~~~~i~d~pG-H~~~l~~G~~~g~~vv~~--qgr~H~yeg~~~~~v~~~  220 (412)
                      +++++|||+||||+++ +.+++..+.        ++.+.+| |++++++|.++|++|+++  |||.|.||||..... ++
T Consensus         1 ~~~~igII~GSGL~~~-~~l~~~~~~--------~v~tpyG~~s~~lv~G~l~g~~v~~l~rhGr~h~y~~~~~~~~-a~   70 (266)
T d1v4na_           1 EKASIGIIGGSGLYDP-QILTNVKEI--------KVYTPYGEPSDNIILGELEGRKVAFLPRHGRGHRIPPHKINYR-AN   70 (266)
T ss_dssp             CCCSEEEEECTTCCCT-TTCCSCEEE--------CCCBTTBCCSSCEEEEEETTEEEEEEETTTTTTCSCGGGCCHH-HH
T ss_pred             CCCcEEEEecCCCCcc-hhccccceE--------EeECCCCCCCccEEEEEECCEEEEEEeCCCCCccCCCcccchh-hH
Confidence            3689999999999885 334444443        3445678 688999999999999877  899999988776543 48


Q ss_pred             HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHH
Q psy9643         221 IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIAR  300 (412)
Q Consensus       221 i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~  300 (412)
                      +|+++.+||++||++|++|++|++++|||+|+++||||+++.+..+++.+.     +.+|++++++||++||+.+.++++
T Consensus        71 i~~l~~lGv~~li~tnaaG~l~~~~~pGdlvvi~d~Id~t~~~~~~~~~~~-----~~~~~~~~~~y~~~lr~~~~~~a~  145 (266)
T d1v4na_          71 IWALKSLGVKWVIAVSAVGSLRLDYKPGDFVVPNQFIDMTKGRTYTFFDGP-----TVAHVSMADPFCEHLRSIILDSAK  145 (266)
T ss_dssp             HHHHHHTTCCEEEEEEEEEESSTTSCTTCEECCSEEEEECCSCCCCSCCSS-----SCBCCCCSSCSCHHHHHHHHHHHH
T ss_pred             HHHHHhcccceEEEEecccccCcCCCCCcEEeccceeccCCCCCccccccc-----CcccCccchhcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999985555555432     356899999999999999999999


Q ss_pred             HcCCCcceeeceEEEEecCccCCHHHHHHHHH-cCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHH
Q psy9643         301 DLNMSSIVKEGVYSVIGGPNFETVAELNMLRI-CGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHE  379 (412)
Q Consensus       301 ~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~-~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~  379 (412)
                      +.+++ +++.|||+++.||+|||+||++++++ ||||+||||++||+++|+++||+|++|++|||++.|   .+.+++|+
T Consensus       146 ~~~~~-~~~~GvY~~~~GP~fET~AEi~~~r~~~GaDvVGMStvPEvilAre~g~~~~~is~vtN~a~~---~~~~~she  221 (266)
T d1v4na_         146 DLGIT-THDKGTYICIEGPRFSTRAESIVWKEVFKADIIGMTLVPEVNLACEAEMCYSVIGMVTDYDVF---ADIPVTAE  221 (266)
T ss_dssp             HHTCC-EESCCEEEEECCSSCCCHHHHHHHHHTTCCSEEESSHHHHHHHHHHTTCEEEEEEEEEEECSS---SSSCCCHH
T ss_pred             HhCCc-cccCceEEEeccCccchHHHHHHHHHhhccccccCCcchHHHHHHhcCccEEeEEEeeccccc---CCCCCCHH
Confidence            99998 44568999999999999999999985 899999999999999999999999999999999986   45689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy9643         380 EVIQAGKLRGPMIKSMVTRIVSYIGEHQ  407 (412)
Q Consensus       380 ev~~~~~~~~~~~~~ll~~~i~~l~~~~  407 (412)
                      ||++.+++++.++.+++.++|++|+.+.
T Consensus       222 eV~~~~~~~~~~~~~lv~~~i~~l~~~~  249 (266)
T d1v4na_         222 EVTKVMAENTAKVKKLLYEVIRRLPEKP  249 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999997643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.9e-24  Score=198.64  Aligned_cols=129  Identities=26%  Similarity=0.370  Sum_probs=101.2

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      .|+|+|+||+++||||||||||+++|   ||. |.++.+..+++++.          .+|++|..++|+++||++.++..
T Consensus         1 ~~~k~~iNi~iiGHvD~GKsTl~~~l---l~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~   77 (239)
T d1f60a3           1 GKEKSHINVVVIGHVDSGKSTTTGHL---IYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW   77 (239)
T ss_dssp             CCCCEEEEEEEEECTTSCHHHHHHHH---HHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE
T ss_pred             CCCCCccEEEEEeCCCCCHHHHHHHH---HHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceecccccee
Confidence            37999999999999999999999999   776 78888877776653          47999999999999999977664


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEeeC--CeEEEEe--------------cceeeeecCCCCcccc
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN--GIPIMCM--------------QGRFHYYEGYPLWKCA  218 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~--g~~vv~~--------------qgr~H~yeg~~~~~v~  218 (412)
                      .+          .+. ..+++++|+|||.|   +|+.|...  ++-+|+-              |+++|+          
T Consensus        78 ~~----------~~~-~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~----------  136 (239)
T d1f60a3          78 KF----------ETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA----------  136 (239)
T ss_dssp             EE----------ECS-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH----------
T ss_pred             Ee----------ccC-CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH----------
Confidence            33          232 34689999999988   77777533  3333331              567776          


Q ss_pred             HHHHHHHHcCCCEEE-EEeccCCCCCC
Q psy9643         219 MPIRVMKLVGVTHLL-ATNAAGGLNPD  244 (412)
Q Consensus       219 ~~i~ll~~lGv~~II-~~n~~G~l~~~  244 (412)
                         ++++.+|++++| ++||+|.++.+
T Consensus       137 ---~~~~~~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3         137 ---LLAFTLGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             ---HHHHHTTCCEEEEEEECGGGGTTC
T ss_pred             ---HHHHHcCCCeEEEEEECCCCCCCC
Confidence               899999999876 59999987644

>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.8e-20  Score=171.49  Aligned_cols=193  Identities=18%  Similarity=0.206  Sum_probs=143.8

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      .++.|.++|+.|++.++..        +.+++.   .+++..++++.||.+|.+|++++++++||++++++.+++..  +
T Consensus        32 ~~~~g~~~g~~v~v~~~G~--------G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~Gdvvi~~~~~~~~~--~  101 (230)
T d1jysa_          32 EIYTGQLNGTEVALLKSGI--------GKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDA--D  101 (230)
T ss_dssp             EEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHHHCCSEEEEEEEEEECSTTCCTTCEEEEEEEEETTC--B
T ss_pred             EEEEEEECCEEEEEEECCC--------ChhHHHHHHHHHHHhcCCcEEEEecccCCccccccCCCEEEEeEEEEecc--c
Confidence            6888999999998876332        334443   36778899999999999999999999999999998887654  1


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHH-HH-HHHHHc-CCcEEeCc
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVA-EL-NMLRIC-GVDAVGMS  341 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~A-E~-~~~~~~-Gad~VgMe  341 (412)
                      .+++....   ......+..++.|+.|.+.+.+.+++.+++  .+.|..  .+|+.|.... .. ++++.+ |+++|+||
T Consensus       102 ~~~~~~~~---~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~--~t~~~~~~~~~~~~~l~~~~~~a~~vdME  174 (230)
T d1jysa_         102 VTAFGYEY---GQLPGCPAGFKADDKLIAAAEACIAELNLN--AVRGLI--VSGDAFINGSVGLAKIRHNFPQAIAVEME  174 (230)
T ss_dssp             CGGGTCCT---TCCTTSCSSEECCHHHHHHHHHHHHHTTCC--EEEEEE--EECSBCCCSHHHHHHHHHHCTTEEEEESS
T ss_pred             cccccccc---ceeccceecccCCHHHHHHHHHHHHhcCCC--eeEeEE--eccCceeechHHHHHHHHhcccceeeech
Confidence            22221110   001123445678999999999999999998  889976  4688775533 33 345565 99999999


Q ss_pred             hhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9643         342 TVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKSMVTRIVSYIG  404 (412)
Q Consensus       342 ~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~ll~~~i~~l~  404 (412)
                      +++++++|+++|+||++|+.|||.+.    ++...+++++++.+.+   ...+++.++|++|+
T Consensus       175 ~aa~a~va~~~~ip~~~ir~ISD~~~----~~~~~~~~~~~~~a~~---~~~~~i~~~i~~l~  230 (230)
T d1jysa_         175 ATAIAHVCHNFNVPFVVVRAISDVAD----QQSHLSFDEFLAVAAK---QSSLMVESLVQKLA  230 (230)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEEETT----C----CHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCEEEEEEEEcCCC----CccccCHHHHHHHHHH---HHHHHHHHHHHHhC
Confidence            99999999999999999999999983    4566677777665544   45668888888874

>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=9.3e-20  Score=169.29  Aligned_cols=180  Identities=17%  Similarity=0.167  Sum_probs=137.1

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNP  267 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~p  267 (412)
                      ..+.|.++|.+|++.+...      ........+..+..+|++.||.+|+||++++++++||+|+++..+++++.  ..+
T Consensus        46 ~~~~G~~~g~~v~~~~~Gi------G~~~aa~~~~~l~~~g~~~iI~~Gt~G~l~~~~~~gdvVi~~~~~~~d~~--~~~  117 (234)
T d1odka_          46 WGYTGLYKGVPVSVQTTGM------GTPSAAIVVEELVRLGARVLVRVGTAGAASSDLAPGELIVAQGAVPLDGT--TRQ  117 (234)
T ss_dssp             CEEEEEETTEEEEEECCCS------SHHHHHHHHHHHHHTTCCEEEEEEEEEESSTTSCTTCEEEEEEEEEESHH--HHH
T ss_pred             EEEEEEECCEEEEEEEcCc------CcchhhHHHhhhhcCCCcEEEEecccccccccccCCeEEEeccccccccc--hhh
Confidence            6788999999999876322      22222223455557999999999999999999999999999887766541  011


Q ss_pred             CCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhHHHH
Q psy9643         268 LLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVHEVI  347 (412)
Q Consensus       268 l~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~pEa~  347 (412)
                      +.        +. .+.....++.+.+.+.+.++..+++  .+.|++++.+++..+++...+.++++|+++|+||++++++
T Consensus       118 ~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~G~~~s~d~f~~~~~~~~~~~~~~g~~~veMEsaa~~~  186 (234)
T d1odka_         118 YL--------EG-RPYAPVPDPEVFRALWRRAEALGYP--HRVGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFL  186 (234)
T ss_dssp             HH--------TT-CCCCCCCCHHHHHHHHHHHHHTTCC--EEEEEEEEESCTTTCCHHHHHHHHTTTEEEEESSHHHHHH
T ss_pred             hc--------cC-CCcCcchhHHHHHHHHHHHHhcCCc--eEeeeEEecCccccccHHHHHHHHhcccceecchHHHHHH
Confidence            10        00 1233457899999999999999998  9999998888877788888889999999999999999999


Q ss_pred             HHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9643         348 TAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGP  390 (412)
Q Consensus       348 ~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~  390 (412)
                      +|+.+|+|+++|++|||...    ..+..+.+++.+...++.+
T Consensus       187 va~~~gi~~~~i~~vsd~~~----~~~~~~~~~~~~~~~~~~~  225 (234)
T d1odka_         187 LGRMRGVRTGAILAVSNRIG----DPELAPPEVLQEGVRRMVE  225 (234)
T ss_dssp             HHHHHTCEEEEEEEEEEEC----------CHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEEEEEEcCCC----CCccCCHHHHHHHHHHHHH
Confidence            99999999999999999984    3455667776666555433

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=1.3e-20  Score=174.52  Aligned_cols=135  Identities=28%  Similarity=0.464  Sum_probs=87.6

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH----------HHHHHhhhcCCCCceeEeeCcCccccc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS----------IAKFLLDSISIRPKIGIICGSGLSTIA  160 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~----------~~~~i~~~~~~e~~~GIi~GsGl~~~~  160 (412)
                      |||+||+++||||||||||+++|   ++. |.++.+...+.+.          ..+|++|..+.|+++|+++.+....+ 
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~L---l~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~-   76 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRL---LMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF-   76 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHH---HHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE-
T ss_pred             CCccEEEEEecCCCCHHHHHHHH---HHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE-
Confidence            79999999999999999999999   676 6666554444332          34788999999999999996654332 


Q ss_pred             ccccCceeeecCCCCCccccCCCCCce---eEEEEe--eCCeEEEEe--------------cceeeeecCCCCccccHHH
Q psy9643         161 DSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGL--INGIPIMCM--------------QGRFHYYEGYPLWKCAMPI  221 (412)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~--~~g~~vv~~--------------qgr~H~yeg~~~~~v~~~i  221 (412)
                               .+ +...++++|+|||.+   ++..|.  .+++-+|+-              |+++|+             
T Consensus        77 ---------~~-~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-------------  133 (224)
T d1jnya3          77 ---------ET-KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-------------  133 (224)
T ss_dssp             ---------EC-SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-------------
T ss_pred             ---------ec-CCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-------------
Confidence                     22 234689999999987   555553  233333331              344454             


Q ss_pred             HHHHHcCCCEEEE-EeccCCCCCCCCCccHHHH
Q psy9643         222 RVMKLVGVTHLLA-TNAAGGLNPDYEVGDIMII  253 (412)
Q Consensus       222 ~ll~~lGv~~II~-~n~~G~l~~~~~~Gd~vi~  253 (412)
                      .+++.+|++.+|+ +|+++..++++..-.+-.+
T Consensus       134 ~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v  166 (224)
T d1jnya3         134 ILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI  166 (224)
T ss_dssp             HHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred             HHHHHhCCCceEEEEEcccCCCccccHHHHHHH
Confidence            7899999987665 9999998877765544333

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=7e-20  Score=172.04  Aligned_cols=148  Identities=28%  Similarity=0.389  Sum_probs=74.8

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHH----------HHHHhhhcCCCCceeEeeCcCcccc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSI----------AKFLLDSISIRPKIGIICGSGLSTI  159 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~----------~~~i~~~~~~e~~~GIi~GsGl~~~  159 (412)
                      .|+|+||+++||||||||||+++|   +|. |.++.+..++++..          .+|+++....++++|+++..+... 
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~L---l~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~-   96 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNI---LFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY-   96 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHH---HHHTTSSCHHHHHHHHHHTCC----------------------------CCE-
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHH---HHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc-
Confidence            578999999999999999999999   776 77776666655432          368899999999999999665432 


Q ss_pred             cccccCceeeecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEecceeeeec-CCCCc-cccHHHHHHHHcCCCEEE
Q psy9643         160 ADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCMQGRFHYYE-GYPLW-KCAMPIRVMKLVGVTHLL  233 (412)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~qgr~H~ye-g~~~~-~v~~~i~ll~~lGv~~II  233 (412)
                               +.+ +.+++.++|+|||.+   +++.|... ...++++......+| |..+. +..-.+.++..+|+++||
T Consensus        97 ---------~~~-~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~ii  166 (245)
T d1r5ba3          97 ---------FET-EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLV  166 (245)
T ss_dssp             ---------EEC-SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEE
T ss_pred             ---------ccc-ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEE
Confidence                     222 335688999999987   67777532 223333211100000 11111 111123899999999875


Q ss_pred             -EEeccCCCCCCCCCccHHH
Q psy9643         234 -ATNAAGGLNPDYEVGDIMI  252 (412)
Q Consensus       234 -~~n~~G~l~~~~~~Gd~vi  252 (412)
                       ++||++..+.++..-.+-.
T Consensus       167 v~iNKmD~~~~~~~e~~~~e  186 (245)
T d1r5ba3         167 VVINKMDEPSVQWSEERYKE  186 (245)
T ss_dssp             EEEECTTSTTCSSCHHHHHH
T ss_pred             EEEEcCCCCccchhHHHHHH
Confidence             5899998877766554443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.75  E-value=4.5e-20  Score=167.77  Aligned_cols=137  Identities=33%  Similarity=0.460  Sum_probs=90.8

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      |||+||+++||||||||||+++|++.+.+ +....+        .++.++....|+++|||+.+++..+          .
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~--------~~~~~~~~~~Er~rgiTi~~~~~~~----------~   62 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFK--------KYEEIDNAPEERARGITINAAHVEY----------S   62 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCC--------CHHHHHSCCEEEETTEEEECEEEEE----------E
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhh--------hhhhcccchhhcCCCccCCcceEEE----------E
Confidence            79999999999999999999999765544 222211        1255678888999999996544322          2


Q ss_pred             cCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEE-Eec
Q psy9643         171 YDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLA-TNA  237 (412)
Q Consensus       171 ~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~-~n~  237 (412)
                      + ....++++|+|||.+   ++..|... ...++++        |+++|+             .++..+|++.+|+ +||
T Consensus        63 ~-~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~-------------~~a~~~~~~~iIv~iNK  128 (196)
T d1d2ea3          63 T-AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-------------LLARQIGVEHVVVYVNK  128 (196)
T ss_dssp             C-SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-------------HHHHHTTCCCEEEEEEC
T ss_pred             e-ceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHH-------------HHHHHhcCCcEEEEEec
Confidence            2 234678999999976   44444321 2222222        677777             8999999988764 899


Q ss_pred             cCCCCCCCCCccHH--HHHHHHhhcc
Q psy9643         238 AGGLNPDYEVGDIM--IIKDHINLMG  261 (412)
Q Consensus       238 ~G~l~~~~~~Gd~v--i~~d~i~~~~  261 (412)
                      ++.+..+ ..-+.+  .+++++...+
T Consensus       129 ~D~~~~~-~~~~~i~~~i~~~l~~~~  153 (196)
T d1d2ea3         129 ADAVQDS-EMVELVELEIRELLTEFG  153 (196)
T ss_dssp             GGGCSCH-HHHHHHHHHHHHHHHHTT
T ss_pred             ccccccH-HHHHHHHHHHHHHHHHhC
Confidence            9986532 111112  3556665444

>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Vibrio cholerae [TaxId: 666]

Probab=99.74  E-value=2.9e-18  Score=159.75  Aligned_cols=179  Identities=15%  Similarity=0.095  Sum_probs=136.4

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      ..+.|.++|++|++.++..        +..|..   ..++..+|++.||+++.+|++++++++||+|+++..+.+++   
T Consensus        46 ~~y~G~~~g~~v~i~~~Gi--------G~~naa~~~~~~i~~~~~~~iI~~G~aG~l~~~~~~GdvVI~~~~~~~~~---  114 (237)
T d1vhwa_          46 FGYTGTYKGRRISVMGHGM--------GIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK---  114 (237)
T ss_dssp             CEEEEEETTEEEEEECCCS--------SHHHHHHHHHHHHHHHCCCEEEEEEEEEECSTTSCTTCEEEEEEEEESCS---
T ss_pred             eEEEEEECCeEEEEEEcCc--------cHHHHHHHHHHHHhhcCCcEEEEeccccccCCCCCCCCEEEEeEeEeccC---
Confidence            4678999999999986443        333343   25888899999999999999999999999999988776554   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHHHHHHHHcCCcEEeCchhH
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAELNMLRICGVDAVGMSTVH  344 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE~~~~~~~Gad~VgMe~~p  344 (412)
                      .+...      +  ...++....++.|.+.+.+.+++.+++  ++.|..++.+++..++....+.++++|+++|+||+++
T Consensus       115 ~~~~~------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa  184 (237)
T d1vhwa_         115 VNRIR------F--KDHDFAAIADYKMVKAAEEAAKARGID--VKVGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAG  184 (237)
T ss_dssp             HHHHH------T--TTSBCCCBCCHHHHHHHHHHHHHTTCC--CEEEEEEECSCSSCSCTTHHHHHHHTTCCEEESSHHH
T ss_pred             ccccc------c--cccccCCcCCHHHHHHHHHHHHHcCCc--eEEcceecCCCccCCCHHHHHHHHhccCccccChHHH
Confidence            11110      0  012334567899999999999999999  8999776444443345555678889999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9643         345 EVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPM  391 (412)
Q Consensus       345 Ea~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~  391 (412)
                      .+++|+.+|+|+++|++|||...    ..+..+.++.....+++.+.
T Consensus       185 ia~v~~~~~v~~~~i~~isd~~~----~~~~~~~~e~~~~~~~~~~i  227 (237)
T d1vhwa_         185 IYGVAAEYGAKALAICTVSDHIK----TGEQTTSEERQNTFNEMIEI  227 (237)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEETT----TCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEEEEEccCc----cCccCChHHHHHHHHHHHHH
Confidence            99999999999999999999873    34556777766666555443

>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Uridine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.3e-18  Score=159.46  Aligned_cols=179  Identities=13%  Similarity=0.200  Sum_probs=133.7

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      ..+.|.++|++|.++++..        +..++  .+..+..+|++.||.+|+||++++++++||+++++..+++++.   
T Consensus        48 ~~y~G~~~g~~V~i~~~Gi--------G~~~aai~~~eL~~~g~~~iI~~Gt~G~l~~~i~~GdvvI~~~~~~~d~~---  116 (250)
T d1rxya_          48 TTWRAELDGKPVIVCSTGI--------GGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGA---  116 (250)
T ss_dssp             EEEEEEETTEEEEEECCCS--------SHHHHHHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEEECSG---
T ss_pred             EEEEEEECCEEEEEEeCCC--------CcchHHHHHHHHhhcCCcEEEEEccccccCCCCCCCCEEehhhhcccCcc---
Confidence            5788999999999986443        22233  2355667999999999999999999999999999877766541   


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC----------------HHHHHH
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET----------------VAELNM  329 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT----------------~AE~~~  329 (412)
                       ..     ...+   .......|+.|.+.+.+++++.+++  .+.|..  .+++.|-+                ....+.
T Consensus       117 -~~-----~~~~---~~~~~~~d~~l~~~l~~~~~~~~~~--~~~G~~--~S~D~Fy~~~~r~~~~~~~~~~~~~~~~~~  183 (250)
T d1rxya_         117 -SL-----HFAP---LEFPAVADFECTTALVEAAKSIGAT--THVGVT--ASSDTFYPGQERYDTYSGRVVRHFKGSMEE  183 (250)
T ss_dssp             -GG-----GTSC---TTSCEECCHHHHHHHHHHHHHTTCC--EEEEEE--EEESCSSGGGTCCCSSSCCCCGGGTTHHHH
T ss_pred             -cc-----ccCC---CCcCccCCHHHHHHHHHHHHHhCCC--cceeeE--eecccccccccchhhhhhhhhHHHHHHHHH
Confidence             11     0111   1223456899999999999999999  899965  56777742                234567


Q ss_pred             HHHcCCcEEeCchhHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9643         330 LRICGVDAVGMSTVHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGPMIKS  394 (412)
Q Consensus       330 ~~~~Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~~~~~  394 (412)
                      |+..|+.+|+||+++.+++|+.+|+|+++|++|||...    .....+.+++.+...++...+.+
T Consensus       184 ~~~~g~~~vEMEsAal~~va~~~~v~~~~i~~isd~~~----~~~~~~~e~~~~~~~~~~~iale  244 (250)
T d1rxya_         184 WQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRT----QQEIPNAETMKQTESHAVKIVVE  244 (250)
T ss_dssp             HHHTTCCEEESSHHHHHHHHHTTTCEEEEEEEEEEETT----SCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCceehhHHHHHHHHHHHcCCcEEEEEEEEcccc----cCCcCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999763    33445666665555554443333

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.73  E-value=1.9e-19  Score=166.61  Aligned_cols=126  Identities=25%  Similarity=0.320  Sum_probs=81.7

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHH------------HHHHHhhhcCCCCceeEeeCcCcc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQS------------IAKFLLDSISIRPKIGIICGSGLS  157 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~------------~~~~i~~~~~~e~~~GIi~GsGl~  157 (412)
                      +|+++||+++||||||||||+++|   |+. |.+..+..++..+            ...|.++..+.++++|+++.++..
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~L---l~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRL---LHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHH---HHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHH---HHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            678999999999999999999999   554 5554433333221            136788888999999999855432


Q ss_pred             cccccccCceeeecCCCCCccccCCCCCce---eEEEEee--CCeEEEEe-------cceeeeecCCCCccccHHHHHHH
Q psy9643         158 TIADSITDRHIFPYDTIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMK  225 (412)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~  225 (412)
                      .          +. ...+++.++|+|||.+   +++.|..  +++.+|+-       |+++|+             .++.
T Consensus        83 ~----------~~-~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-------------~~~~  138 (222)
T d1zunb3          83 Y----------FS-TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-------------YIAS  138 (222)
T ss_dssp             E----------EE-CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-------------HHHH
T ss_pred             E----------Ee-ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-------------HHHH
Confidence            2          11 2345689999999987   6666642  23322321       567776             8999


Q ss_pred             HcCCCEEEE-EeccCCCCC
Q psy9643         226 LVGVTHLLA-TNAAGGLNP  243 (412)
Q Consensus       226 ~lGv~~II~-~n~~G~l~~  243 (412)
                      .+|+++||+ +||++.++.
T Consensus       139 ~~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3         139 LLGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             HTTCCEEEEEEECTTTTTS
T ss_pred             HcCCCEEEEEEEccccccc
Confidence            999998765 899998763

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2.7e-20  Score=170.12  Aligned_cols=121  Identities=30%  Similarity=0.399  Sum_probs=82.9

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeec
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPY  171 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~  171 (412)
                      |||+||+++||||||||||+++|++..  |..+..  ..++  ..+.+|.+++|+++|||+.++...          +.+
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~--g~~~~~--~~~~--~~~~~d~~~eE~~rgiTi~~~~~~----------~~~   64 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVA--AAENPN--VEVK--DYGDIDKAPEERARGITINTAHVE----------YET   64 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH--HHSCTT--SCCC--CHHHHSCSHHHHHHTCCCSCEEEE----------EEC
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHh--hhccCC--cchh--hhhhcccchHHhcCCeEEEeeEEE----------EEe
Confidence            799999999999999999999994322  211110  0001  123467788899999999775432          223


Q ss_pred             CCCCCccccCCCCCce---eEEEEee--CCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEE-EEecc
Q psy9643         172 DTIPYFPVSTVPGHKG---QLVFGLI--NGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLL-ATNAA  238 (412)
Q Consensus       172 ~~~~~~~i~d~pGH~~---~l~~G~~--~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II-~~n~~  238 (412)
                      . -..++++|+|||.+   +++.|..  +++-+|+-       |++.|+             .++..+|++++| ++||+
T Consensus        65 ~-~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-------------~~~~~~gi~~iiv~iNK~  130 (204)
T d2c78a3          65 A-KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-------------LLARQVGVPYIVVFMNKV  130 (204)
T ss_dssp             S-SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-------------HHHHHTTCCCEEEEEECG
T ss_pred             C-CeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-------------HHHHHcCCCeEEEEEEec
Confidence            3 34689999999987   5555532  23333321       567777             899999999865 59999


Q ss_pred             CCCC
Q psy9643         239 GGLN  242 (412)
Q Consensus       239 G~l~  242 (412)
                      |.++
T Consensus       131 D~~~  134 (204)
T d2c78a3         131 DMVD  134 (204)
T ss_dssp             GGCC
T ss_pred             ccCC
Confidence            9876

>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-deoxy-5'-methylthioadenosine phosphorylase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=2.5e-18  Score=160.21  Aligned_cols=179  Identities=12%  Similarity=0.072  Sum_probs=128.5

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      ..+.|.++|.+|+++.+..        +..+.  .+..+..+|++.||++|.||++++++++||+|+++..+..++   .
T Consensus        44 ~~~~G~~~g~~v~v~~~Gi--------G~~~aa~~~~el~~~g~~~iI~~GtaG~l~~~~~~GdiVi~~~a~~~d~---~  112 (234)
T d1je0a_          44 LVYTGKYNGETVSIATHGI--------GGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQG---G  112 (234)
T ss_dssp             CEEEEEETTEEEEEEECCS--------SHHHHHHHHHHHHHTTCCEEEEEEEEEECSTTCCTTCEEEEEEEEBCCS---H
T ss_pred             EEEEEEEeeEEEEEEeCCC--------cHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCEEeecceeeccC---C
Confidence            5688999999999886432        22233  345566899999999999999999999999999887664433   1


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC--CHHHHHHHHHcCCcEEeCchh
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE--TVAELNMLRICGVDAVGMSTV  343 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe--T~AE~~~~~~~Gad~VgMe~~  343 (412)
                      ++...+      .....+....|++|.+.+.+++++++++  ++.|.+  ++++.|-  +....+.++++|+++|+||++
T Consensus       113 ~~~~~~------~~~~~~~~~~d~~l~~~l~~~~~~~~~~--~~~G~i--~T~D~F~~~~~~~~~~~~~~g~~~veMEsa  182 (234)
T d1je0a_         113 LFYQYL------RDNACVASTPDFELTNKLVTSFSKRNLK--YYVGNV--FSSDAFYAEDEEFVKKWSSRGNIAVEMECA  182 (234)
T ss_dssp             HHHHHH------SSCCBCCCCCCHHHHHHHHHHHHHTTCC--EEEEEE--EECSCTTCCCTTHHHHHHTTTEEEEESSHH
T ss_pred             chhhhc------cCCCCcCCCCChHHHHHHHHHHHHcCCC--eEEece--ecCCcchhhhHHHHHHHHHhhcccchhhHH
Confidence            111000      0001123345889999999999999999  999976  5788884  444467888899999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9643         344 HEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGKLRGP  390 (412)
Q Consensus       344 pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~~~~~  390 (412)
                      +.+++|+.+|+|+++|++|||....   ++...+.++..+...++.+
T Consensus       183 al~~va~~~~v~~~~i~~isD~~~~---~~~~~~~e~~~~~~~~~~~  226 (234)
T d1je0a_         183 TLFTLSKVKGWKSATVLVVSDNLAK---GGIWITKEELEKSVMDGAK  226 (234)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEEECC-----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEEEEEccccC---CCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999997631   2333455555555555443

>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Purine nucleoside phosphorylase, PNP
species: Bacillus anthracis [TaxId: 1392]

Probab=99.71  E-value=7.3e-18  Score=156.59  Aligned_cols=172  Identities=19%  Similarity=0.170  Sum_probs=124.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHH---HHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMP---IRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAG  264 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~---i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~  264 (412)
                      ..++|+++|++|++.++..        +..|..   ..+++.+|++.||++|.+|++++++++||+|+++..+...+   
T Consensus        45 ~~ytG~~~g~~V~v~~~Gi--------G~~~aa~~~~eli~~~~~~~iI~~GtaG~l~~~~~~Gd~vi~~~~~~~~~---  113 (231)
T d2ac7a1          45 LGFTGTYKGKRVSVQGTGM--------GVPSISIYVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSN---  113 (231)
T ss_dssp             CEEEEEETTEEEEEECCCS--------SHHHHHHHHHHHHHHHCCCEEEEEEEEEECSTTSCTTCEEEEEEEEESCS---
T ss_pred             EEEEEEECCEEEEEEECCc--------cchhHHHHHHHHHHhcCCCEEEEeccccCcCCCCCCCceEEeeeEEEecc---
Confidence            5688999999999987432        333332   35778899999999999999999999999999876554332   


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccC--CHHHHHHHHHcCCcEEeCch
Q psy9643         265 NNPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFE--TVAELNMLRICGVDAVGMST  342 (412)
Q Consensus       265 ~~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~fe--T~AE~~~~~~~Gad~VgMe~  342 (412)
                      .+++..+     +   .+.....+++|.+.+.+++++.|++  ++.|..  .+++.|-  +....+.++++|+++|+||+
T Consensus       114 ~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~--~T~D~F~~~~~~~~~~~~~~g~~~veMEs  181 (231)
T d2ac7a1         114 MNRLTFP-----G---FDFAPAANFDLLKKAYDAGTEKGLH--VRVGNV--LTADVFYRESMDMVKKLGDYGVLAVEMET  181 (231)
T ss_dssp             HHHHHST-----T---CCCCCBCCHHHHHHHHHHHHHHTCC--EEEEEE--EECSCSSCSCCHHHHHHHHTTCCEEESSH
T ss_pred             ccccccc-----C---CCcCCcCCHHHHHHHHHhHHhhccc--eEEeeE--eeccccccccHHHHHHHHhhcchhhccHH
Confidence            1111110     0   1234466889999999999999998  999965  5788884  45556788889999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCCCCCCCCCCCCHHHHHHHHH
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCVTDYDDHAEANHEEVIQAGK  386 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~~~~~~~~~~s~~ev~~~~~  386 (412)
                      ++.+++|+.+|+|+++|++|||...    ..+..+.++....+.
T Consensus       182 aaia~va~~~~v~~~~i~~isD~~~----~~~~~~~~e~~~~~~  221 (231)
T d2ac7a1         182 TALYTLAAKYGVNALSVLTVSDHIF----TGEETTSEERQTTFN  221 (231)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEEC---------------CHHHH
T ss_pred             HHHHHHHHHcCCcEEEEEEEEccCC----CCCcCCHHHHHHHHH
Confidence            9999999999999999999999763    233444445433333

>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: AMP nucleosidase
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.66  E-value=3.9e-17  Score=153.12  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=114.6

Q ss_pred             eCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCCCCCCCC
Q psy9643         194 INGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGNNPLLGV  271 (412)
Q Consensus       194 ~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~~pl~g~  271 (412)
                      ..|+.|.+++...        +..|+  .+..+..+|++.||.+|+||++++++++||+|+++..+.+.+.   +.    
T Consensus        55 ~~g~~itv~~~Gi--------G~~nAa~~~~~L~~~~~~~iI~iGt~GgL~~~~~vGDvVIa~~ai~~dgt---~~----  119 (246)
T d1ybfa_          55 ASAEGVTLINFGM--------GSANAATIMDLLWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGEGT---SN----  119 (246)
T ss_dssp             CCCSSEEEEECCS--------CHHHHHHHHHHTTTTCCSEEEEEEEECCSSCTTCTTCEEEEEEEEECSST---GG----
T ss_pred             CCCCeEEEEEcCC--------CHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCCCEEEEEEEEecccc---cc----
Confidence            3466666665332        22233  3456667999999999999999999999999999988776541   11    


Q ss_pred             CCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCCHHH-HHHHHHcCCcEEeCchhHHHHHHH
Q psy9643         272 NEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFETVAE-LNMLRICGVDAVGMSTVHEVITAH  350 (412)
Q Consensus       272 ~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT~AE-~~~~~~~Gad~VgMe~~pEa~~A~  350 (412)
                        ....   .......|+.|...+.+++++.+.+  .+.|++++......++..+ .+.+++.|+++|+||+++++++|+
T Consensus       120 --~~~~---~~~~~~~d~~l~~a~~~~~~~~~~~--~~~G~~~t~d~f~~~~~~~~~~~~~~~ga~aveMEsAala~va~  192 (246)
T d1ybfa_         120 --DYLP---EEVPSLPSFSVLRAISSAIQNKGKD--YWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETATLMTVGF  192 (246)
T ss_dssp             --GTSC---TTSCBCCCHHHHHHHHHHHHTTTCC--EEEEEEEECSCCCCTTCHHHHHHHHHTTCSEEESSHHHHHHHHH
T ss_pred             --ccCC---CceeccCCHHHHHHHHHHHHhcccc--ccccceeecCccccchhHHHHHHHHhcCCcEecchHHHHHHHHH
Confidence              0111   1223456899999999999999998  9999876444433355444 457788999999999999999999


Q ss_pred             HcCCcEEEEEeeeccCC
Q psy9643         351 HCGMTVTAFSLITNKCV  367 (412)
Q Consensus       351 ~~Gi~~~~i~~VSd~a~  367 (412)
                      .+|+|+++|++|||...
T Consensus       193 ~~gip~~~i~~VSD~~~  209 (246)
T d1ybfa_         193 ANKIPMGALLLISDRPM  209 (246)
T ss_dssp             HTTCCEEEEEEECSCSS
T ss_pred             HhCCcEEEEEEEeccCC
Confidence            99999999999999874

>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: Putative uridine phosphorylase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=8.1e-17  Score=150.43  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=119.9

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC-CCCccHHHHHHHHhhccCCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD-YEVGDIMIIKDHINLMGFAGNN  266 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~-~~~Gd~vi~~d~i~~~~~~~~~  266 (412)
                      ..+.|.++|++|+++.+..-.     |+ ....+..+..+|++.||.+|.+|+++++ ..+||+++.+......+    +
T Consensus        46 ~~~~G~~~g~~v~v~~~GiG~-----~~-aai~~~el~~~g~~~iI~~GtaGgl~~~~~~~gdvvi~~~~~~~~~----~  115 (243)
T d1q1ga_          46 KSVECHYKGQKFLCVSHGVGS-----AG-CAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDR----V  115 (243)
T ss_dssp             EEEEEEETTEEEEEEECCSSH-----HH-HHHHHHHHHTTTCCEEEEEEEEEESCTTTCCTTCEEEEEEEEEESS----H
T ss_pred             EEEEEEEcceEEEEEecCccc-----ch-HHHHHHHHHhcCCeEEEEecccccccccccccCceeccchhccccc----c
Confidence            578899999999998643321     11 2223566778999999999999999998 58999998776554332    1


Q ss_pred             CCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHcCCCcceeeceEEEEecCccCC----HHHHHHHHHcCCcEEeCch
Q psy9643         267 PLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIARDLNMSSIVKEGVYSVIGGPNFET----VAELNMLRICGVDAVGMST  342 (412)
Q Consensus       267 pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~~~g~~~~~~~Gvy~~~~GP~feT----~AE~~~~~~~Gad~VgMe~  342 (412)
                      ....     ..   .......|+.|.+.+.+++++.+++  ++.|..  +++|.|-+    ++..+.++..|+++|+||+
T Consensus       116 ~~~~-----~~---~~~~~~~~~~l~~~~~~~~~~~~~~--~~~G~~--~s~D~fy~~~~~~~~~~~~~~~g~~~vEMEs  183 (243)
T d1q1ga_         116 SHLL-----IH---GDFPAVGDFDVYDTLNKCAQELNVP--VFNGIS--VSSDMYYPNKIIPSRLEDYSKANAAVVEMEL  183 (243)
T ss_dssp             HHHH-----SC---TTSCEECCHHHHHHHHHHHHHTTCC--CEEEEE--EEESCSSCCSSSCCSHHHHHHTTCCEEESSH
T ss_pred             cccc-----CC---CccCcCCCHHHHHHHHHHHHHhCCc--eeeeee--eeccccccccchhHHHHHHHhcCCceecchH
Confidence            0000     00   1223456899999999999999999  999976  46777743    2234677889999999999


Q ss_pred             hHHHHHHHHcCCcEEEEEeeeccCC
Q psy9643         343 VHEVITAHHCGMTVTAFSLITNKCV  367 (412)
Q Consensus       343 ~pEa~~A~~~Gi~~~~i~~VSd~a~  367 (412)
                      ++.+++|+.+|+|+++|++|||...
T Consensus       184 aal~~va~~~~v~~~~i~~isd~~~  208 (243)
T d1q1ga_         184 ATLMVIGTLRKVKTGGILIVDGCPF  208 (243)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECBCGG
T ss_pred             HHHHHHHHHcCCcEEEEEEEECCcC
Confidence            9999999999999999999999763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.55  E-value=2.2e-16  Score=143.35  Aligned_cols=135  Identities=25%  Similarity=0.348  Sum_probs=69.8

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCce
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRH  167 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~  167 (412)
                      .++.|||+||+|+||||||||||+++|++.+..  ...   ++.+...  ..+....++.+++.........  ......
T Consensus         2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~--~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   72 (205)
T d2qn6a3           2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTS--KHS---EELKRGM--TIKLGYAETNIGVCESCKKPEA--YVTEPS   72 (205)
T ss_dssp             CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC---------------------CEEEEEEEEECTTSCTTTT--EESSSC
T ss_pred             CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhch--hhH---HHHHhhc--ccccchhhhhhhhhhhhhhhhe--eeeccc
Confidence            357899999999999999999999999654332  100   0010100  0111111223333322111000  000000


Q ss_pred             e-----e-ecCCCCCccccCCCCCce---eEEEEeeC-CeEEEEe---------cceeeeecCCCCccccHHHHHHHHcC
Q psy9643         168 I-----F-PYDTIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM---------QGRFHYYEGYPLWKCAMPIRVMKLVG  228 (412)
Q Consensus       168 ~-----~-~~~~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~---------qgr~H~yeg~~~~~v~~~i~ll~~lG  228 (412)
                      .     . .....+.++++|+|||.+   +++.|... ...++++         |+++|+             .++..+|
T Consensus        73 ~~~~~~~~~~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~-------------~~~~~~~  139 (205)
T d2qn6a3          73 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF-------------VALGIIG  139 (205)
T ss_dssp             CGGGTCCSCCEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHH-------------HHHHHTT
T ss_pred             ceeeeeeccccceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHH-------------HHHHHcC
Confidence            0     0 000113478999999986   45555322 2223332         345555             7889999


Q ss_pred             CCEEE-EEeccCCCCCC
Q psy9643         229 VTHLL-ATNAAGGLNPD  244 (412)
Q Consensus       229 v~~II-~~n~~G~l~~~  244 (412)
                      ++.+| ++||++.++++
T Consensus       140 i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3         140 VKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             CCCEEEEEECGGGSCHH
T ss_pred             CceeeeccccCCCccch
Confidence            97765 48999987654

>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: AMP nucleosidase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=3.5e-14  Score=142.93  Aligned_cols=155  Identities=10%  Similarity=0.084  Sum_probs=112.5

Q ss_pred             eEEEEeeCCeEEEEecceeeeecCCCCccccH--HHHHHHHcCCCEEEEEeccCCCCCCCCCccHHHHHHHHhhccCCCC
Q psy9643         188 QLVFGLINGIPIMCMQGRFHYYEGYPLWKCAM--PIRVMKLVGVTHLLATNAAGGLNPDYEVGDIMIIKDHINLMGFAGN  265 (412)
Q Consensus       188 ~l~~G~~~g~~vv~~qgr~H~yeg~~~~~v~~--~i~ll~~lGv~~II~~n~~G~l~~~~~~Gd~vi~~d~i~~~~~~~~  265 (412)
                      .+..+..+|..|.+++...        +..|+  .+.++..+|++.||++|+||++++++++||+|+++..+.+++.  .
T Consensus       255 ~yhl~~~dG~~Itiv~~GI--------G~~nAA~~tdlLa~lgpk~II~iGtaGGL~~~lkiGDvVIa~aair~Dgt--s  324 (477)
T d1t8sa_         255 AWHLITADGQGITLVNIGV--------GPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHV--L  324 (477)
T ss_dssp             EEEEEETTSCCEEEEECCS--------SHHHHHHHHHHHGGGCCSEEEECCEEEECSTTCCTTCEEEEEEEEEECCT--T
T ss_pred             ceeeecCCCCeEEEEecCC--------CHHHHHHHHHHHHHcCCCEEEEecceeccCCCCcCCCEEEEeEEEecCCc--c
Confidence            3455677888888876332        23333  3456678999999999999999999999999999988877651  1


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccHHHHHHHHHHHH--------HcCCCcceeeceEEEEecCcc--CCHHH--HHHHHHc
Q psy9643         266 NPLLGVNEDRFGPRFPPMNKAYNKQLRAATLDIAR--------DLNMSSIVKEGVYSVIGGPNF--ETVAE--LNMLRIC  333 (412)
Q Consensus       266 ~pl~g~~~~~~g~~~~~~~~~~d~~Lr~~~~~~a~--------~~g~~~~~~~Gvy~~~~GP~f--eT~AE--~~~~~~~  333 (412)
                      +.+        .+.  ....+.++++...+.++++        +++..  ++.|+++  ++++|  +...+  .+.++..
T Consensus       325 ~~y--------~p~--e~Papa~~ev~~al~~a~~~v~~~~~~el~~~--~~tG~V~--TtD~f~~e~~~~~~~~~~~~~  390 (477)
T d1t8sa_         325 DAV--------LPP--DIPIPSIAEVQRALYDATKLVSGRPGEEVKQR--LRTGTVV--TTDDRNWELRYSASALRFNLS  390 (477)
T ss_dssp             TTT--------SCT--TSCCCCCHHHHHHHHHHHHHHSSCCGGGGGGT--EEEEEEE--EESCTTGGGGHHHHHHHHHHH
T ss_pred             ccc--------ccC--ccccCCCHHHHHHHHHHHHHHHHhHHHHcCCc--eEEeEEE--ccCCcccccchHHHHHHHHhc
Confidence            111        111  1123445666666666654        34555  8999774  56654  44433  3456788


Q ss_pred             CCcEEeCchhHHHHHHHHcCCcEEEEEeeeccC
Q psy9643         334 GVDAVGMSTVHEVITAHHCGMTVTAFSLITNKC  366 (412)
Q Consensus       334 Gad~VgMe~~pEa~~A~~~Gi~~~~i~~VSd~a  366 (412)
                      ||.+|+||+++.+++|..+|+|+++|++|||..
T Consensus       391 gAlAVDMEsAAIAaVa~~~~VP~gaLl~VSD~p  423 (477)
T d1t8sa_         391 RAVAIDMESATIAAQGYRFRVPYGTLLCVSDKP  423 (477)
T ss_dssp             TEEEEESSHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred             CcEEEhHhHHHHHHHHHHcCCcEEEEEEEECCC
Confidence            999999999999999999999999999999975

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=2e-15  Score=135.72  Aligned_cols=136  Identities=26%  Similarity=0.389  Sum_probs=76.4

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCccccc-ccccCcee-
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIA-DSITDRHI-  168 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~-~~~~~~~~-  168 (412)
                      .||++||+++||||||||||+++|++....                    +...+++.|++...++..+. +....... 
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~--------------------~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~   61 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTD--------------------THSEELRRGITIKIGFADAEIRRCPNCGRY   61 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC----------------------CGGGGSCSSSCCEEEEEEEEECTTTCCE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhh--------------------hhHHHHHcCcccccchhhhhhhccchhhhc
Confidence            578999999999999999999999653222                    12224445666554443321 00000000 


Q ss_pred             -----eecC-----CCCCccccCCCCCce---eEEEEeeC-CeEEEEe---------cceeeeecCCCCccccHHHHHHH
Q psy9643         169 -----FPYD-----TIPYFPVSTVPGHKG---QLVFGLIN-GIPIMCM---------QGRFHYYEGYPLWKCAMPIRVMK  225 (412)
Q Consensus       169 -----~~~~-----~~~~~~i~d~pGH~~---~l~~G~~~-g~~vv~~---------qgr~H~yeg~~~~~v~~~i~ll~  225 (412)
                           ..+.     ....++++|+|||.+   ++..|... ...++++         |+++|+             .+++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~-------------~~~~  128 (195)
T d1kk1a3          62 STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-------------MALQ  128 (195)
T ss_dssp             ESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-------------HHHH
T ss_pred             cceeeeeeeeeeecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHH-------------HHHH
Confidence                 0000     122468899999976   44444322 1222222         244554             7899


Q ss_pred             HcCCCEEE-EEeccCCCCCCCCCccHHHHHHHHhh
Q psy9643         226 LVGVTHLL-ATNAAGGLNPDYEVGDIMIIKDHINL  259 (412)
Q Consensus       226 ~lGv~~II-~~n~~G~l~~~~~~Gd~vi~~d~i~~  259 (412)
                      .+|++.+| ++|+++-.++....-.+..+.+++..
T Consensus       129 ~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~  163 (195)
T d1kk1a3         129 IIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG  163 (195)
T ss_dssp             HHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             HhcCccceeeeecccchhhHHHHHHHHHHHHHhcc
Confidence            99999766 58999876543322233344455543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=1e-14  Score=138.43  Aligned_cols=121  Identities=21%  Similarity=0.282  Sum_probs=71.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeee
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFP  170 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~  170 (412)
                      +..+||+++||+|||||||+++|   |+. |.++.  ..++++ ..+++|..++|+++||++.+.+..          +.
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~l---l~~~g~~~~--~g~v~~-~~~~~D~~~~E~~r~~si~~~~~~----------~~   67 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERI---LYYTGRIHK--IGEVHE-GAATMDFMEQERERGITITAAVTT----------CF   67 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHH---HHHHTSSCC----------------------CCCCCCCSEEE----------EE
T ss_pred             hhceEEEEEeCCCCCHHHHHHHH---HHhcCcccc--ccceec-CceEEeccHHHHhcCCccccceee----------ec
Confidence            33779999999999999999999   665 44332  223322 256788899999999999776543          33


Q ss_pred             cCCCCCccccCCCCCce---eEEEE--eeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEecc
Q psy9643         171 YDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAA  238 (412)
Q Consensus       171 ~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~  238 (412)
                      |.+ ..++++|+|||.+   ++..+  ..+++-+|+-       |++..+             +.++..++++|+++||+
T Consensus        68 ~~~-~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-------------~~a~~~~lP~i~fINKm  133 (276)
T d2bv3a2          68 WKD-HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-------------RQAEKYKVPRIAFANKM  133 (276)
T ss_dssp             ETT-EEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-------------HHHHTTTCCEEEEEECT
T ss_pred             cCC-eEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-------------HHHHHcCCCEEEEEecc
Confidence            433 3589999999987   33332  1333333331       344333             78889999999999999


Q ss_pred             CCCC
Q psy9643         239 GGLN  242 (412)
Q Consensus       239 G~l~  242 (412)
                      |--+
T Consensus       134 Dr~~  137 (276)
T d2bv3a2         134 DKTG  137 (276)
T ss_dssp             TSTT
T ss_pred             cccc
Confidence            8654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=3.7e-14  Score=138.44  Aligned_cols=137  Identities=18%  Similarity=0.207  Sum_probs=75.5

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCc
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDR  166 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~  166 (412)
                      +.+....+||+++||+|||||||+++|   ++. |.+..+...+     ...+|...+|++|||++.++...+.-...+.
T Consensus        11 m~~~~~IRNI~iiGhvd~GKTTL~d~L---l~~~g~i~~~~~~~-----~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~   82 (341)
T d1n0ua2          11 MDKVTNVRNMSVIAHVDHGKSTLTDSL---VQRAGIISAAKAGE-----ARFTDTRKDEQERGITIKSTAISLYSEMSDE   82 (341)
T ss_dssp             HHCGGGEEEEEEECCGGGTHHHHHHHH---HHHHBCCBC-----------------------CCCBCCCEEEEEEECCHH
T ss_pred             hcCcccCcEEEEEeCCCCcHHHHHHHH---HHHCCCcccccccc-----ccccccchhHHhcCceEeCCEEEEEeccCcc
Confidence            344454679999999999999999999   554 4443321111     1235777889999999988765542110000


Q ss_pred             --eeee---cCCCCCccccCCCCCce---eEEEE--eeCCeEEEEe-------cceeeeecCCCCccccHHHHHHHHcCC
Q psy9643         167 --HIFP---YDTIPYFPVSTVPGHKG---QLVFG--LINGIPIMCM-------QGRFHYYEGYPLWKCAMPIRVMKLVGV  229 (412)
Q Consensus       167 --~~~~---~~~~~~~~i~d~pGH~~---~l~~G--~~~g~~vv~~-------qgr~H~yeg~~~~~v~~~i~ll~~lGv  229 (412)
                        ....   -.+...++++|+|||.+   +...+  ..+|+-+|+-       |++.|+             +.+...++
T Consensus        83 ~~~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~-------------~~a~~~~~  149 (341)
T d1n0ua2          83 DVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-------------RQALGERI  149 (341)
T ss_dssp             HHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-------------HHHHHTTC
T ss_pred             cccchhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH-------------HHHHHcCC
Confidence              0000   00112378999999987   22222  1344444442       455554             78899999


Q ss_pred             CEEEEEeccCCCCCCC
Q psy9643         230 THLLATNAAGGLNPDY  245 (412)
Q Consensus       230 ~~II~~n~~G~l~~~~  245 (412)
                      +.++++|++|-+.-++
T Consensus       150 p~i~viNKiDr~~~el  165 (341)
T d1n0ua2         150 KPVVVINKVDRALLEL  165 (341)
T ss_dssp             EEEEEEECHHHHHHTS
T ss_pred             CeEEEEECcccccccH
Confidence            9999999999765444

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.29  E-value=3e-14  Score=134.68  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=77.4

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhccc-cccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGLME-GMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .+||+++||+|||||||+++|   |+. |..+..  .+++. -..++|..++|+++|+++.+++..+          .|.
T Consensus         2 iRNv~iiGh~~~GKTtL~e~l---l~~~g~~~~~--g~v~~-g~~~~D~~~~E~~r~~ti~~~~~~~----------~~~   65 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEAL---LYKTGAKERR--GRVEE-GTTTTDYTPEAKLHRTTVRTGVAPL----------LFR   65 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH---HHHTTSSSSC--CCGGG-TCCSSCCSHHHHHTTSCCSCEEEEE----------EET
T ss_pred             eeEEEEEcCCCCcHHHHHHHH---HHHcCCchhh--ccchh-ccccccchHHHHHhCCeEEeecccc----------ccc
Confidence            479999999999999999999   554 322211  11111 1234566677899999997766433          233


Q ss_pred             CCCCccccCCCCCce---eEEEEe-eCCeEEEEe--------cceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCC
Q psy9643         173 TIPYFPVSTVPGHKG---QLVFGL-INGIPIMCM--------QGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGG  240 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~---~l~~G~-~~g~~vv~~--------qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~  240 (412)
                      + ..++++|||||.+   ++..+. ..+..++++        |++.++             +.+...|++.++++||++-
T Consensus        66 ~-~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-------------~~~~~~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          66 G-HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-------------TVAERLGLPRMVVVTKLDK  131 (267)
T ss_dssp             T-EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-------------HHHHHTTCCEEEEEECGGG
T ss_pred             c-cceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-------------Hhhhhcccccccccccccc
Confidence            2 2578999999987   333332 122333333        344444             7899999999999999974

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.95  E-value=1e-10  Score=107.04  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=39.6

Q ss_pred             CCCccccCCCCCce---eEEEEeeCCe--EEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCCCC
Q psy9643         174 IPYFPVSTVPGHKG---QLVFGLINGI--PIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPDYE  246 (412)
Q Consensus       174 ~~~~~i~d~pGH~~---~l~~G~~~g~--~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~~~  246 (412)
                      ...+.++|+|||.+   .+..+ +...  .++++...    +|..+. ....+..+...+++.||++||+|.++.+..
T Consensus        69 ~~~~~~iDtPGh~~f~~~~~~~-~~~~D~~ilVvda~----~g~~~~-~~~~~~~~~~~~~p~iivlNK~D~~~~~~~  140 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTLRKRG-GALADLAILIVDIN----EGFKPQ-TQEALNILRMYRTPFVVAANKIDRIHGWRV  140 (227)
T ss_dssp             CCEEEEECCCTTSCCTTSBCSS-SBSCSEEEEEEETT----TCCCHH-HHHHHHHHHHTTCCEEEEEECGGGSTTCCC
T ss_pred             ccccccccccceecccccchhc-ccccceEEEEEecc----cCcccc-hhHHHHHhhcCCCeEEEEEECccCCCchhh
Confidence            34578899999976   22222 2222  23333211    222221 122347888999999999999998776643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.90  E-value=5.8e-11  Score=104.46  Aligned_cols=119  Identities=19%  Similarity=0.315  Sum_probs=59.6

Q ss_pred             CeeeEEeeecccCCChhhhhHHhhhccccccchhhHHHHHHHHHHHhhhcCCCCceeEeeCcCcccccccccCceeeecC
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAITKGLMEGMLGSYTYELIQSIAKFLLDSISIRPKIGIICGSGLSTIADSITDRHIFPYD  172 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~GIi~GsGl~~~~~~~~~~~~~~~~  172 (412)
                      .++||+++||+|||||||..+|++.-..                ...++...++.+|++...+...+          .+ 
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~----------~~-   56 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIAST----------------SAHDKLPESQKRGITIDIGFSAF----------KL-   56 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC------------------------------------CCCEE----------EE-
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCc----------------eecccccceeeeeeecccccccc----------cc-
Confidence            3889999999999999999999542110                11234556777888775443221          11 


Q ss_pred             CCCCccccCCCCCce---eEEEEeeCC--eEEEEecceeeeecCCCCccccHHHHHHHHcCCCEEEEEeccCCCCCC
Q psy9643         173 TIPYFPVSTVPGHKG---QLVFGLING--IPIMCMQGRFHYYEGYPLWKCAMPIRVMKLVGVTHLLATNAAGGLNPD  244 (412)
Q Consensus       173 ~~~~~~i~d~pGH~~---~l~~G~~~g--~~vv~~qgr~H~yeg~~~~~v~~~i~ll~~lGv~~II~~n~~G~l~~~  244 (412)
                      ...++.+.|+|||.+   .+..+ +..  ..++++..+.    |..+.. ......+..+|++.++++||+|.++++
T Consensus        57 ~~~~~~~~d~~g~~~~~~~~~~~-l~~~d~~ilv~d~~~----g~~~~~-~~~~~~~~~~~~p~iiv~NKiD~~~~~  127 (179)
T d1wb1a4          57 ENYRITLVDAPGHADLIRAVVSA-ADIIDLALIVVDAKE----GPKTQT-GEHMLILDHFNIPIIVVITKSDNAGTE  127 (179)
T ss_dssp             TTEEEEECCCSSHHHHHHHHHHH-TTSCCEEEEEEETTT----CSCHHH-HHHHHHHHHTTCCBCEEEECTTSSCHH
T ss_pred             CCccccccccccccccccchhhh-hhhcccccccccccc----ccchhh-hhhhhhhhhcCCcceeccccccccCHH
Confidence            223567889999965   11111 112  2222322111    111111 112267888999999999999987643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.16  E-value=0.00025  Score=62.29  Aligned_cols=50  Identities=66%  Similarity=1.135  Sum_probs=43.0

Q ss_pred             EEee---cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhcCCCCC
Q psy9643           3 VYYI---DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALEGKEPE   52 (412)
Q Consensus         3 ~~~~---d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~~~~~~   52 (412)
                      ||++   |. .|++..|.|+.|++++|.++||.+++.|||.+||+.+++...++
T Consensus       123 Iv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~  176 (196)
T d1d2ea3         123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE  176 (196)
T ss_dssp             EEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTT
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcc
Confidence            4555   87 47899999999999999999999999999999999998765443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.00029  Score=60.06  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++.++|+++||+++|||||+.+|++
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4579999999999999999999953

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.00021  Score=60.32  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+++|+.++|||||+.+|++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999953

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0026  Score=55.69  Aligned_cols=45  Identities=53%  Similarity=0.904  Sum_probs=40.3

Q ss_pred             EEee---cC-CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhhc
Q psy9643           3 VYYI---DA-ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCALE   47 (412)
Q Consensus         3 ~~~~---d~-~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al~   47 (412)
                      |||+   |. +++|.++.++.+++++|.+++|++...|++.|||+.+++
T Consensus       124 iv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~~~  172 (204)
T d2c78a3         124 VVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  172 (204)
T ss_dssp             EEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             EEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhhhh
Confidence            4554   87 578899999999999999999999999999999999875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.77  E-value=0.0015  Score=57.51  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -|++.||+|||||||+++|+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999999953

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0028  Score=53.07  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++||.++|||||+.+|++
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999964

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.23  E-value=0.0041  Score=53.13  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..|+++||.++|||||+.+|++
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            3699999999999999999964

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.88  E-value=0.0056  Score=51.51  Aligned_cols=21  Identities=24%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+++||.++|||||+.+|++
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            799999999999999999954

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.0089  Score=57.64  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ++..+||+++|..++|||||+.+|+|
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhC
Confidence            45579999999999999999999954

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.81  E-value=0.0065  Score=49.74  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.|+++|+.++|||||+.+|++
T Consensus         1 ikI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999954

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.63  E-value=0.013  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             eeEEeeecccCCChhhhhHHhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +.|+++|..++|||||+.+|++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999954

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.011  Score=48.95  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ...|+++|+.++|||||..+|++
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            57799999999999999999943

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.014  Score=47.64  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .|+|.|.-++|||||+.+|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=92.97  E-value=0.021  Score=46.84  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .+||++.|..++||||++..|...
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH
Confidence            689999999999999999999554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.93  E-value=0.022  Score=47.59  Aligned_cols=27  Identities=30%  Similarity=0.380  Sum_probs=22.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +..+-|||.|..+||||||+.+|...+
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            335679999999999999999996543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.75  E-value=0.014  Score=48.83  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ||+++|+.++|||||..+|++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            799999999999999999954

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.49  E-value=0.017  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -+|+++|-.++|||||+.+|.+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.021  Score=48.86  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ||+++|+.++|||||+.+|++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            899999999999999999943

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=92.20  E-value=0.023  Score=46.35  Aligned_cols=24  Identities=33%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      +.||+++|-.++||||++.+|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999999543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.14  E-value=0.033  Score=47.02  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=25.2

Q ss_pred             ccCCCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          88 YSRDKPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        88 ~~~~k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +.+.|..+-|+|-|-.++||||++..|.+.+
T Consensus         3 ~~~~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           3 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455667889999999999999999996544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.09  E-value=0.024  Score=46.91  Aligned_cols=23  Identities=48%  Similarity=0.655  Sum_probs=20.8

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ||+++|..++||||+...|.+.|
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999996655

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.97  E-value=0.035  Score=45.26  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=25.1

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++.+.-..|-++|--++||||++.+|...|
T Consensus         1 ~~~~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           1 PRATQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CTTTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356667888999999999999999996555

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.029  Score=44.84  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ||.++|-.++||||++..|...|.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            799999999999999999976553

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.39  E-value=0.034  Score=47.15  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=18.9

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+++|+.++|||||..+|++
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            678999999999999999943

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.29  E-value=0.037  Score=45.98  Aligned_cols=21  Identities=33%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .|+++|+.++|||||+.+|++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999954

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.28  E-value=0.033  Score=45.95  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      |+|+|-.+||||||+.+|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            589999999999999999543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.26  E-value=0.024  Score=47.50  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=19.2

Q ss_pred             eEEeeecccCCChhhhhHHhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~  116 (412)
                      +|+++|+.++|||||+.+|++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999953

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.91  E-value=0.097  Score=45.92  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=36.1

Q ss_pred             cCC--CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhh
Q psy9643           7 DAA--DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCAL   46 (412)
Q Consensus         7 d~~--d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al   46 (412)
                      |+.  +++..+....|++.++.+++|++.++|+|..||+...
T Consensus       153 D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~  194 (222)
T d1zunb3         153 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGD  194 (222)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCT
T ss_pred             ccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCc
Confidence            883  6889999999999999999999999999999998874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.84  E-value=0.041  Score=45.30  Aligned_cols=25  Identities=36%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             eeEEeeecccCCChhhhhHHhhhcc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++|+++|=.++|||||+..|++.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCC
Confidence            4689999999999999999976543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.68  E-value=0.06  Score=45.34  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHhhh
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .+.||. .|.++|-.++||||++..|+..
T Consensus         2 ~~~kp~-iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           2 EKSKPN-VVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCCCE-EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCc-EEEEECCCCCCHHHHHHHHHHH
Confidence            456754 6789999999999999999643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.27  E-value=0.068  Score=44.03  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=23.0

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ...+..+.|+++|..++|||||+.+|.
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHh
Confidence            344557899999999999999999993

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.93  E-value=0.055  Score=44.83  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +||+++|-.++||||++..|.+.+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999995543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.068  Score=45.76  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +-|||.|..+|||||++..|...+
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            458999999999999999996544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=89.35  E-value=0.069  Score=43.68  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      -++|+++|+.++|||||+.++.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999994

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=89.26  E-value=0.061  Score=44.53  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +|+++|..++||||+...|+..|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999965543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.08  Score=49.35  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=24.8

Q ss_pred             cccCCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          87 VYSRDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++......-|||.|..++|||||+.+|..
T Consensus        47 ~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          47 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            444455688899999999999999999943

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.65  E-value=0.056  Score=48.39  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             CCCCeeeEEeeecccCCChhhhhHHhh
Q psy9643          90 RDKPHCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        90 ~~k~~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      ..+..+||+++|-.++|||||+..|++
T Consensus        28 ~~~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          28 EDVNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             TTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCCcEEEEECCCCCcHHHHHHHHhC
Confidence            356689999999999999999999943

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.071  Score=47.57  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||+..|++.+
T Consensus        32 vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          32 IGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            6899999999999999997743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=88.51  E-value=0.078  Score=42.74  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=19.5

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -|++.|-.++||||++.+|.+.+
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            37889999999999999996543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.29  E-value=0.077  Score=43.63  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.5

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ||+++|-.++||||+...|...|.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999965543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.20  E-value=0.078  Score=45.80  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||.+.|++.+
T Consensus        30 ~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCChHHHHHHHHhccc
Confidence            5899999999999999997754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.58  E-value=0.091  Score=41.93  Aligned_cols=19  Identities=37%  Similarity=0.405  Sum_probs=17.3

Q ss_pred             EEeeecccCCChhhhhHHh
Q psy9643          97 IGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~  115 (412)
                      |++.|-.++||||++.+|.
T Consensus         5 Iii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999999984

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=87.52  E-value=0.11  Score=43.13  Aligned_cols=23  Identities=26%  Similarity=0.174  Sum_probs=20.3

Q ss_pred             eeEEeeecccCCChhhhhHHhhh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++|+++|-.+|||||++..|.+-
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=0.14  Score=42.76  Aligned_cols=24  Identities=25%  Similarity=0.528  Sum_probs=21.7

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      =|.++|+++|+.++|||||+.+++
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~   26 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFL   26 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHH
Confidence            367899999999999999999993

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.23  E-value=0.11  Score=43.24  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.1

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      +||+++|=.++||||++..|+..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999996543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=87.21  E-value=0.1  Score=42.56  Aligned_cols=24  Identities=21%  Similarity=0.133  Sum_probs=20.3

Q ss_pred             eEEeeecccCCChhhhhHHhhhcc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      -|++.|-.++||||++..|...|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999966543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=87.17  E-value=0.12  Score=41.47  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=20.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .+.|+++|-.++|||||..++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999999943

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.09  E-value=0.098  Score=46.31  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|+.++|||||...|++.+
T Consensus        34 ~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCcchhhHhccCCC
Confidence            5899999999999999987643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=87.00  E-value=0.11  Score=43.21  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             eeEEeeecccCCChhhhhHHhhhc
Q psy9643          95 CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++|+++|-.+|||||++..|+..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999996543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=86.91  E-value=0.1  Score=46.44  Aligned_cols=23  Identities=35%  Similarity=0.328  Sum_probs=20.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            58999999999999999987553

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.85  E-value=0.11  Score=46.56  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        44 iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          44 VALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEECCCCChHHHHHHHHhcc
Confidence            689999999999999999764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.77  E-value=0.11  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        65 vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          65 LAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            6899999999999999997743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=86.68  E-value=0.12  Score=41.90  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      |.+.|-.++||||++.+|...+
T Consensus         6 I~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            5677999999999999996554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.63  E-value=0.11  Score=46.84  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|.+.+
T Consensus        31 ~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHcCc
Confidence            5899999999999999997643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.1  Score=46.14  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=19.2

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            589999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=0.15  Score=46.97  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=24.1

Q ss_pred             CCCeeeEEeeecccCCChhhhhHHhhhc
Q psy9643          91 DKPHCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        91 ~k~~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .|..+-|||.|-+++||||++..|...|
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHH
Confidence            5667889999999999999999996555

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=86.22  E-value=0.12  Score=46.10  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        31 vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          31 IAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6899999999999999997743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.18  E-value=0.13  Score=41.65  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=18.7

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -|.+.|..++||||++..|.+.
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=0.14  Score=42.44  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      |.+.|+++|..++|||||+.+++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~   28 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFT   28 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHH
Confidence            45779999999999999999994

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.12  E-value=0.12  Score=46.31  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.0

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .++++|..++|||||+..|++.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            36899999999999999997743

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.04  E-value=0.27  Score=43.35  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             EEee---cC--CCHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhh
Q psy9643           3 VYYI---DA--ADAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCAL   46 (412)
Q Consensus         3 ~~~~---d~--~d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al   46 (412)
                      |||+   |.  .|++..+.+..|++++|.+++|+...+|+|.+||+..-
T Consensus       148 iv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~  196 (239)
T d1f60a3         148 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGD  196 (239)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCC
Confidence            5566   76  37888888889999999999999999999999998763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.03  E-value=0.13  Score=43.00  Aligned_cols=24  Identities=21%  Similarity=0.140  Sum_probs=20.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      .++|+++|-.++||||++..|..-
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=85.93  E-value=0.13  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.154  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        32 ~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          32 MILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHhcCC
Confidence            5899999999999999997643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.85  E-value=0.13  Score=43.17  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      |+++|-.++||||++.+|.+.+
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999996543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=85.46  E-value=0.14  Score=45.57  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||+..|.+.+
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHcCCc
Confidence            5899999999999999997754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=85.38  E-value=0.2  Score=40.81  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      -+.|+++|-.++|||||+.+|++
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            57899999999999999999943

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.38  E-value=0.14  Score=45.53  Aligned_cols=22  Identities=27%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        35 ~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            6899999999999999997743

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=85.01  E-value=0.18  Score=41.74  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.4

Q ss_pred             cCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          89 SRDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        89 ~~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .++| .+.|+++|..++|||||+.++.
T Consensus        13 ~~~k-~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          13 GSNK-ELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             TCSS-CEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCCc-eEEEEEECCCCCCHHHHHHHHh
Confidence            3444 8899999999999999999993

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.83  E-value=0.48  Score=40.95  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             CHHHHHHHHHHHHhhHhhcCCCCCCCCeeechhhhhh
Q psy9643          10 DAEMAELVEMEMRELLTEMGWKGDEVPFVKGSALCAL   46 (412)
Q Consensus        10 d~e~~~lve~e~~~~l~~~~~~~~~~p~~~gsal~al   46 (412)
                      |++.++.|+.++++++.+|||+..+.|+|.-||+.+-
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~  195 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD  195 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCC
Confidence            6889999999999999999999999999999997763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.49  E-value=0.16  Score=45.50  Aligned_cols=23  Identities=39%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      ++++|..++|||||...|++.+.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCc
Confidence            48999999999999999988543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.25  E-value=0.17  Score=44.76  Aligned_cols=22  Identities=27%  Similarity=0.237  Sum_probs=19.6

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          29 VVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHhcCC
Confidence            5899999999999999997754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.92  E-value=0.23  Score=40.37  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             CeeeEEeeecccCCChhhhhHHh
Q psy9643          93 PHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        93 ~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +.+-|+++|.-+.|||||+.+++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~   25 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFV   25 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHH
Confidence            36789999999999999999984

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=83.86  E-value=0.2  Score=42.21  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             eeeEEeeecccCCChhhhhHHhhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      -++|+++|-.++||||++..|+..
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.86  E-value=0.18  Score=44.83  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.4

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            3789999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.49  E-value=0.14  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      ++++|..++|||||...|++.
T Consensus        47 vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          47 VAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999998763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.23  E-value=0.14  Score=42.31  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             cCCCCe--eeEEeeecccCCChhhhhHHhhhc
Q psy9643          89 SRDKPH--CNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        89 ~~~k~~--~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ...+.|  ..|-++|..++||||++..|...+
T Consensus        12 ~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          12 GTRGGFRGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             SSSCSCCCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334444  457788999999999999995543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.16  E-value=0.21  Score=44.88  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEeeecccCCChhhhhHHhhh
Q psy9643          97 IGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~  117 (412)
                      |+++||-.+|||||+.+|++.
T Consensus        29 ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHhCC
Confidence            789999999999999999763

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=82.97  E-value=0.22  Score=41.46  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             eeeEEeeecccCCChhhhhHHhh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITK  116 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~  116 (412)
                      .++|+++|-.++||||++..|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999964

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.65  E-value=0.25  Score=45.74  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=24.1

Q ss_pred             cccCCCCeeeEEeeecccCCChhhhhHHh
Q psy9643          87 VYSRDKPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        87 ~~~~~k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      ..+..+...-|||.|-.++|||||+++|.
T Consensus        44 ~~~~~~~~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          44 VLPQTGRAIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             HGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             hhhccCCceEEeeeCCCCCCHHHHHHHHH
Confidence            34455567889999999999999999993

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.58  E-value=0.18  Score=41.43  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=9.6

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .-|+++|+.++|||||+.+|+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEEECCCCC----------
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            358999999999999999993

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=82.08  E-value=0.3  Score=40.66  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      |..+=||+.|=++|||||++..|.
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999998883

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.03  E-value=0.26  Score=41.80  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             eeeEEeeecccCCChhhhhHHhhhc
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      .+.|+|-|..++||||++..|+.-+
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678888999999999999996543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=81.78  E-value=0.27  Score=39.70  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             eeeEEeeecccCCChhhhhHHh
Q psy9643          94 HCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        94 ~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .+.|+++|-.++|||||..+|.
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHc
Confidence            4679999999999999999994

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.68  E-value=0.78  Score=40.25  Aligned_cols=18  Identities=33%  Similarity=0.403  Sum_probs=16.7

Q ss_pred             EeeecccCCChhhhhHHh
Q psy9643          98 GTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        98 ~~igHVD~GKSTl~~~l~  115 (412)
                      +++||.+.|||||+.+|.
T Consensus       101 vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2         101 VFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EEEESHHHHHHHHHHHHC
T ss_pred             EEECCCCccHHHHHHhhc
Confidence            589999999999999994

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.63  E-value=0.25  Score=41.56  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             eEEeeecccCCChhhhhHHhhhc
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~l  118 (412)
                      -|+|-|=.++||||++..|.+.|
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999995544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.21  Score=42.81  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.0

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      |+|-|..++||||++..|...|
T Consensus         5 I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           5 ISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEECSTTSSHHHHHTTTGGGC
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999996544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=81.44  E-value=0.24  Score=43.78  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             EEeeecccCCChhhhhHHhhhcc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGLM  119 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l~  119 (412)
                      +|++|..++|||||...|++.+.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            58999999999999999977543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.33  E-value=0.27  Score=40.18  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=18.9

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      .-|+++|..++|||||+.+++
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~   26 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYA   26 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458999999999999999994

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=81.28  E-value=0.17  Score=44.70  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=19.7

Q ss_pred             EEeeecccCCChhhhhHHhhhc
Q psy9643          97 IGTIGHVDHGKTTLTAAITKGL  118 (412)
Q Consensus        97 i~~igHVD~GKSTl~~~l~~~l  118 (412)
                      ++++|..++|||||...|++.+
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            5899999999999999997754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=80.87  E-value=0.31  Score=39.42  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CCeeeEEeeecccCCChhhhhHHh
Q psy9643          92 KPHCNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        92 k~~~ni~~igHVD~GKSTl~~~l~  115 (412)
                      |.+..|+++|=-++|||||..+|+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            446789999999999999999994

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=0.34  Score=39.57  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             eeEEeeecccCCChhhhhHHh
Q psy9643          95 CNIGTIGHVDHGKTTLTAAIT  115 (412)
Q Consensus        95 ~ni~~igHVD~GKSTl~~~l~  115 (412)
                      +-|+++|+.++|||||+.+++
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~   26 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            458999999999999999994

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.50  E-value=0.29  Score=39.38  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.3

Q ss_pred             eEEeeecccCCChhhhhHHhhh
Q psy9643          96 NIGTIGHVDHGKTTLTAAITKG  117 (412)
Q Consensus        96 ni~~igHVD~GKSTl~~~l~~~  117 (412)
                      ||.+.|=.++|||||+.++...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6889999999999999999543