Psyllid ID: psy9687

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAEGL
Secondary Structure (PSIPRED)
cEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccccEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccEccccccccc
Coil and Loop (DISEMBL)
mevlwsqnglrlcetniddcesgpclngglckdllnnytcncqqtgytgphceiniddcapnpckngarcvDKVKDYlcecypgytgktcaddikecesnpcqyggtclehsnmslyqrsdlpalpkiFAQEFNYSTAEGL
Flexible Loop (DISEMBL)
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAEGL
Low Complexity Region (SEG)
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAEGL
Disordered region (IsUnstruct)
***LWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEF********
Disordered Region (DISOPRED)
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAEGL
Disordered Region (DISEMBL)
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAEGL
Disordered Region (DISPRO)
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYST****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQEFNYSTAEGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
P10040	2146	Protein crumbs OS=Drosoph	yes	N/A	0.914	0.060	0.576	8e-41
P82279	1406	Protein crumbs homolog 1	yes	N/A	0.865	0.086	0.484	2e-26
Q8VHS2	1405	Protein crumbs homolog 1	yes	N/A	0.822	0.082	0.5	2e-26
Q80YA8	1282	Protein crumbs homolog 2	no	N/A	0.879	0.096	0.410	5e-26
Q5IJ48	1285	Protein crumbs homolog 2	no	N/A	0.879	0.096	0.403	1e-25
P10079	1064	Fibropellin-1 OS=Strongyl	no	N/A	0.765	0.101	0.536	5e-25
Q2PZL6	4981	Protocadherin Fat 4 OS=Mu	no	N/A	0.673	0.019	0.458	3e-24
P49013	570	Fibropellin-3 OS=Strongyl	no	N/A	0.744	0.184	0.537	4e-24
P07207	2703	Neurogenic locus Notch pr	no	N/A	0.709	0.036	0.514	8e-24
O35516	2470	Neurogenic locus notch ho	no	N/A	0.836	0.047	0.491	1e-23

>sp|P10040|CRB_DROME Protein crumbs OS=Drosophila melanogaster GN=crb PE=1 SV=3

 Score =  165 bits (417), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 95/130 (73%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           R+C+ +IDDC   PCLNGG C D L  + C+C  TGY G +CE+NID+C  NPC NGA+C
Sbjct: 756 RICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKC 815

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
           +D+VKDY C+C+ GY GK C  DI ECESNPCQY G CLE SN++LYQ S +  LPK+F+
Sbjct: 816 LDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLYQMSRITDLPKVFS 875

Query: 131 QEFNYSTAEG 140
           Q F++  A G
Sbjct: 876 QPFSFENASG 885

Plays a central role in cell polarity establishment. Participates in the assembly, positioning and maintenance of adherens junctions via its interaction with the SAC complex. Controls the coalescence of the spots of zonula adherens (ZA) into a adhesive ring around the cells. It may act as a signal. Involved in morphogenesis of the photoreceptor rhabdomere, for positioning and growth of rhabdomere and AJ during the crucial period of photoreceptor extension along the proximodistal axis of the retina.
Drosophila melanogaster (taxid: 7227)

>sp|P82279|CRUM1_HUMAN Protein crumbs homolog 1 OS=Homo sapiens GN=CRB1 PE=1 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 75/128 (58%), Gaps = 6/128 (4%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           CE N D+C S PCL+GGLC D  N Y+CNC  +G+TG HCE  +  C   PC N A C D
Sbjct: 259 CELNTDECASQPCLHGGLCVDGENRYSCNCTGSGFTGTHCETLMPLCWSKPCHNNATCED 318

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
            V +Y C C+PGYTG  C  D+ EC SNPCQ  G C+E S+   Y R  +  LP      
Sbjct: 319 SVDNYTCHCWPGYTGAQCEIDLNECNSNPCQSNGECVELSSEKQYGR--ITGLPS----S 372

Query: 133 FNYSTAEG 140
           F+Y  A G
Sbjct: 373 FSYHEASG 380

Plays a role in photoreceptor morphogenesis in the retina. May maintain cell polarization and adhesion.

Homo sapiens (taxid: 9606)

>sp|Q8VHS2|CRUM1_MOUSE Protein crumbs homolog 1 OS=Mus musculus GN=Crb1 PE=1 SV=3

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 74/118 (62%), Gaps = 2/118 (1%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           CE ++++CES PCL+GGLC D  N+Y C+C  +G+TG HCE  I  C   PC N A C D
Sbjct: 258 CELSVNECESQPCLHGGLCVDGRNSYHCDCTGSGFTGMHCESLIPLCWSKPCHNDATCED 317

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            V  Y+C C PGYTG  C  DI EC SNPCQ+ G C+E S+  LY   +   LP  F+
Sbjct: 318 TVDSYICHCRPGYTGALCETDINECSSNPCQFWGECVELSSEGLY--GNTAGLPSSFS 373

Plays a role in photoreceptor morphogenesis in the retina. May maintain cell polarization and adhesion. Isoform 3 could play a role in epidermal tissue morphogenesis. May function in cell attachment for stratified epithelial organization.

Mus musculus (taxid: 10090)

>sp|Q80YA8|CRUM2_MOUSE Protein crumbs homolog 2 OS=Mus musculus GN=Crb2 PE=2 SV=3

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 5/129 (3%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           C+ ++D+C+S PC +GG+C DL+N + C+C  TGY G  CE  + +CA  PC + A C+D
Sbjct: 185 CQLDVDECQSQPCAHGGVCHDLVNGFRCDCADTGYEGARCEQEVLECASAPCAHNASCLD 244

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
             + + C C+PG++G+ C  D  EC S PCQ GG CL+ S+ +LY       +  IF   
Sbjct: 245 GFRSFRCLCWPGFSGERCEVDEDECASGPCQNGGQCLQRSDPTLYG-----GVQAIFPGA 299

Query: 133 FNYSTAEGL 141
           F++S A G 
Sbjct: 300 FSFSHAAGF 308

May play a role in polarized cells morphogenesis.

Mus musculus (taxid: 10090)

>sp|Q5IJ48|CRUM2_HUMAN Protein crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1 SV=2

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 5/129 (3%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           C+ ++D+C+S PC +GG C DL+N + C+C  TGY G HCE  + +CA  PC++ A C++
Sbjct: 181 CQLDLDECQSQPCAHGGTCHDLVNGFRCDCAGTGYEGTHCEREVLECASAPCEHNASCLE 240

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
            +  + C C+PGY+G+ C  D  EC S+PCQ+GG CL+ S+ +LY       +   F   
Sbjct: 241 GLGSFRCLCWPGYSGELCEVDEDECASSPCQHGGRCLQRSDPALYG-----GVQAAFPGA 295

Query: 133 FNYSTAEGL 141
           F++  A G 
Sbjct: 296 FSFRHAAGF 304

May play a role in polarized cells morphogenesis.

Homo sapiens (taxid: 9606)

>sp|P10079|FBP1_STRPU Fibropellin-1 OS=Strongylocentrotus purpuratus GN=EGF1 PE=1 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 74/110 (67%), Gaps = 2/110 (1%)

Query: 4   LWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNP 63
           L    G+R CE NID+C S PC NGG+C D +N YTC+C   G++G +CE N D+C+  P
Sbjct: 279 LAGFTGVR-CEVNIDECASAPCQNGGICIDGINGYTCSCP-LGFSGDNCENNDDECSSIP 336

Query: 64  CKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           C NG  CVD V  Y+C C PG+TG TCAD+I EC S PCQ GG C++  N
Sbjct: 337 CLNGGTCVDLVNAYMCVCAPGWTGPTCADNIDECASAPCQNGGVCIDGVN 386

Forms the apical lamina, a component of the extracellular matrix.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 13   CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
            CE +ID+C   PC NGG C +L+  ++C+C + G+TG  CE +I++C P+PCK+GA C +
Sbjct: 3861 CEVDIDECLPAPCHNGGTCHNLVGGFSCSCPE-GFTGRACERDINECLPSPCKHGAVCQN 3919

Query: 73   KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
                + C C  GYTGK C   +  CE NPC  GG+C
Sbjct: 3920 FPGGFNCVCKTGYTGKMCESSVNYCECNPCFNGGSC 3955

May function in the regulation of planar cell polarity. Cadherins are cell-cell interaction molecules.

Mus musculus (taxid: 10090)

>sp|P49013|FBP3_STRPU Fibropellin-3 OS=Strongylocentrotus purpuratus GN=EGF3 PE=1 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 68/106 (64%), Gaps = 1/106 (0%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           CETNI++C S PCLNGG C D ++ Y C C    YTG HCEI++D CA  PC+NG  C +
Sbjct: 325 CETNINECASSPCLNGGSCLDGVDGYVCQCLPN-YTGTHCEISLDACASLPCQNGGVCTN 383

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQ 118
              DY+CEC PGYTG  C  DI EC S PCQ GG C+    M + Q
Sbjct: 384 VGGDYVCECLPGYTGINCEIDINECASLPCQNGGECINGIAMYICQ 429

Forms the apical lamina, a component of the extracellular matrix.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1 SV=3

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 1/101 (0%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           CE N+D+C S PC N G+C D +N Y C C + G+   HC  ++D+CA NPC N  RC D
Sbjct: 712 CEKNVDECISSPCANNGVCIDQVNGYKCECPR-GFYDAHCLSDVDECASNPCVNEGRCED 770

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
            + +++C C PGYTGK C  DI EC SNPCQ+GGTC +  N
Sbjct: 771 GINEFICHCPPGYTGKRCELDIDECSSNPCQHGGTCYDKLN 811

Signaling protein, which regulates, with both positive and negative signals, the differentiation of at least central and peripheral nervous system and eye, wing disk, oogenesis, segmental appendages such as antennae and legs, and muscles, through lateral inhibition or induction. Functions as a receptor for membrane-bound ligands Delta and Serrate to regulate cell-fate determination. Upon ligand activation, and releasing from the cell membrane, the Notch intracellular domain (NICD) forms a transcriptional activator complex with Su(H) (Suppressor of hairless) and activates genes of the E(spl) complex. Essential for proper differentiation of ectoderm. Fringe (fng) acts in the Golgi to determine the type of O-linked fucose on the EGF modules in N, altering the ability of N to bind with Delta (Dl). O-fut1 also has a role in modulating the interaction. Rumi acts in the endoplasmic reticulum to glucosylate the EGF modules in N, this is required for correct folding and cleavage of N.

Drosophila melanogaster (taxid: 7227)

>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus musculus GN=Notch2 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 73/120 (60%), Gaps = 2/120 (1%)

Query: 12  LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
           +C   ID+C S PCLN G C DL+N Y CNCQ  G +G +CEIN DDCA NPC +G  CV
Sbjct: 601 ICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQ-PGTSGLNCEINFDDCASNPCMHGV-CV 658

Query: 72  DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQ 131
           D +  Y C C PG+TG+ C  DI EC SNPC+ G TC+   N       + P  P  ++Q
Sbjct: 659 DGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINDVNGFRCICPEGPHHPSCYSQ 718

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. In collaboration with RELA/p65 enhances NFATc1 promoter activity and positively regulates RANKL-induced osteoclast differentiation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
195450244	2116	GK22329 [Drosophila willistoni] gi|19416	0.914	0.060	0.623	4e-41
328709399	2180	PREDICTED: protein crumbs-like isoform 4	0.921	0.059	0.625	5e-41
328709397	2180	PREDICTED: protein crumbs-like isoform 3	0.921	0.059	0.625	5e-41
328709395	2304	PREDICTED: protein crumbs-like isoform 2	0.921	0.056	0.625	6e-41
328709393	2304	PREDICTED: protein crumbs-like isoform 1	0.921	0.056	0.625	6e-41
270002371	2162	hypothetical protein TcasGA2_TC004424 [T	0.914	0.059	0.646	2e-40
91076648	2134	PREDICTED: similar to crumbs CG6383-PA [	0.914	0.060	0.646	2e-40
195504849	2296	GE23470 [Drosophila yakuba] gi|194185356	0.914	0.056	0.6	6e-40
194909783	2188	GG11278 [Drosophila erecta] gi|190656646	0.914	0.058	0.592	8e-40
195573441	2287	GD21088 [Drosophila simulans] gi|1942006	0.914	0.056	0.584	2e-39

>gi|195450244|ref|XP_002072428.1| GK22329 [Drosophila willistoni] gi|194168513|gb|EDW83414.1| GK22329 [Drosophila willistoni]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 96/130 (73%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           R+C+ +IDDC S PCLN G C D L  + C+C  TGY G +CE+NID+C  NPC NGA+C
Sbjct: 725 RICDIDIDDCVSAPCLNSGKCIDELGGFHCDCSGTGYEGKNCELNIDECISNPCTNGAQC 784

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
           VD+VKDYLCEC+PGYTGK C  DI ECESNPCQY   CLE SNM+LYQ S    LPK+F+
Sbjct: 785 VDQVKDYLCECHPGYTGKNCDQDINECESNPCQYNSNCLERSNMTLYQLSKFMDLPKVFS 844

Query: 131 QEFNYSTAEG 140
           Q F+Y  A G
Sbjct: 845 QPFSYENASG 854

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709399|ref|XP_003243948.1| PREDICTED: protein crumbs-like isoform 4 [Acyrthosiphon pisum]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           +LCETNIDDCES PC N GLC D LN+Y CNC  TG+ G HCE+NI+DC  + C+N   C
Sbjct: 774 KLCETNIDDCESSPCQNMGLCIDGLNSYECNCTNTGFEGNHCELNINDCIHDQCENNGTC 833

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
           +D +KDY C+CY GYTGK C  DI +CE+NPCQYGGTCLEHSN+SLY + D   L  IF 
Sbjct: 834 IDGIKDYSCKCYTGYTGKNCEVDINDCENNPCQYGGTCLEHSNISLYNQKDNNNLSAIFQ 893

Query: 131 QEFNYSTAEGL 141
           QEF+Y+TA G 
Sbjct: 894 QEFSYATAHGF 904

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709397|ref|XP_003243947.1| PREDICTED: protein crumbs-like isoform 3 [Acyrthosiphon pisum]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           +LCETNIDDCES PC N GLC D LN+Y CNC  TG+ G HCE+NI+DC  + C+N   C
Sbjct: 774 KLCETNIDDCESSPCQNMGLCIDGLNSYECNCTNTGFEGNHCELNINDCIHDQCENNGTC 833

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
           +D +KDY C+CY GYTGK C  DI +CE+NPCQYGGTCLEHSN+SLY + D   L  IF 
Sbjct: 834 IDGIKDYSCKCYTGYTGKNCEVDINDCENNPCQYGGTCLEHSNISLYNQKDNNNLSAIFQ 893

Query: 131 QEFNYSTAEGL 141
           QEF+Y+TA G 
Sbjct: 894 QEFSYATAHGF 904

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709395|ref|XP_003243946.1| PREDICTED: protein crumbs-like isoform 2 [Acyrthosiphon pisum]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query: 11   RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
            +LCETNIDDCES PC N GLC D LN+Y CNC  TG+ G HCE+NI+DC  + C+N   C
Sbjct: 898  KLCETNIDDCESSPCQNMGLCIDGLNSYECNCTNTGFEGNHCELNINDCIHDQCENNGTC 957

Query: 71   VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            +D +KDY C+CY GYTGK C  DI +CE+NPCQYGGTCLEHSN+SLY + D   L  IF 
Sbjct: 958  IDGIKDYSCKCYTGYTGKNCEVDINDCENNPCQYGGTCLEHSNISLYNQKDNNNLSAIFQ 1017

Query: 131  QEFNYSTAEGL 141
            QEF+Y+TA G 
Sbjct: 1018 QEFSYATAHGF 1028

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709393|ref|XP_001950069.2| PREDICTED: protein crumbs-like isoform 1 [Acyrthosiphon pisum]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query: 11   RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
            +LCETNIDDCES PC N GLC D LN+Y CNC  TG+ G HCE+NI+DC  + C+N   C
Sbjct: 898  KLCETNIDDCESSPCQNMGLCIDGLNSYECNCTNTGFEGNHCELNINDCIHDQCENNGTC 957

Query: 71   VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            +D +KDY C+CY GYTGK C  DI +CE+NPCQYGGTCLEHSN+SLY + D   L  IF 
Sbjct: 958  IDGIKDYSCKCYTGYTGKNCEVDINDCENNPCQYGGTCLEHSNISLYNQKDNNNLSAIFQ 1017

Query: 131  QEFNYSTAEGL 141
            QEF+Y+TA G 
Sbjct: 1018 QEFSYATAHGF 1028

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002371|gb|EEZ98818.1| hypothetical protein TcasGA2_TC004424 [Tribolium castaneum]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 98/130 (75%), Gaps = 1/130 (0%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           ++CE NIDDCES PCLNG  C D LN+YTCNC  TGYTG HCE NI+DC  +PC+NGA C
Sbjct: 765 KICEINIDDCESSPCLNGAECIDGLNSYTCNCTDTGYTGTHCETNINDCIGDPCENGASC 824

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            DKVKDY C CY GY+GK C  DI EC+SNPC++ GTC EHSN +LYQ SD   LP+IF+
Sbjct: 825 EDKVKDYDCHCYAGYSGKNCEIDINECDSNPCKHNGTCYEHSNQTLYQLSD-QTLPEIFS 883

Query: 131 QEFNYSTAEG 140
            EF+Y  A G
Sbjct: 884 AEFSYDKAAG 893

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076648|ref|XP_970640.1| PREDICTED: similar to crumbs CG6383-PA [Tribolium castaneum]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 98/130 (75%), Gaps = 1/130 (0%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           ++CE NIDDCES PCLNG  C D LN+YTCNC  TGYTG HCE NI+DC  +PC+NGA C
Sbjct: 737 KICEINIDDCESSPCLNGAECIDGLNSYTCNCTDTGYTGTHCETNINDCIGDPCENGASC 796

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            DKVKDY C CY GY+GK C  DI EC+SNPC++ GTC EHSN +LYQ SD   LP+IF+
Sbjct: 797 EDKVKDYDCHCYAGYSGKNCEIDINECDSNPCKHNGTCYEHSNQTLYQLSD-QTLPEIFS 855

Query: 131 QEFNYSTAEG 140
            EF+Y  A G
Sbjct: 856 AEFSYDKAAG 865

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195504849|ref|XP_002099255.1| GE23470 [Drosophila yakuba] gi|194185356|gb|EDW98967.1| GE23470 [Drosophila yakuba]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 94/130 (72%)

Query: 11   RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
            R+C+ +IDDC   PCLNGG C D L  + C+C  TGY G +CE+NID+C  NPC NGA+C
Sbjct: 906  RICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGQNCELNIDECLSNPCTNGAKC 965

Query: 71   VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            VDKVKDY C+C+ GY GK C  DI ECESNPCQY G CLE SNM+LYQ S +  LPK+F+
Sbjct: 966  VDKVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNMTLYQMSRITDLPKVFS 1025

Query: 131  QEFNYSTAEG 140
            Q F +  A G
Sbjct: 1026 QPFTFENASG 1035

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194909783|ref|XP_001982008.1| GG11278 [Drosophila erecta] gi|190656646|gb|EDV53878.1| GG11278 [Drosophila erecta]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 95/130 (73%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           R+C+ +IDDC   PCLNGG C D L  + C+C  TGY G +CE+NID+C  NPC NGA+C
Sbjct: 798 RICDIDIDDCVGNPCLNGGQCIDQLGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKC 857

Query: 71  VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
           VD+VKDY C+C+ GY GK C  DI ECESNPCQY G CLE SNM+LYQ S +  LPK+F+
Sbjct: 858 VDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNMTLYQMSRITDLPKVFS 917

Query: 131 QEFNYSTAEG 140
           Q F++  A G
Sbjct: 918 QPFSFENASG 927

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195573441|ref|XP_002104702.1| GD21088 [Drosophila simulans] gi|194200629|gb|EDX14205.1| GD21088 [Drosophila simulans]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 95/130 (73%)

Query: 11   RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
            R+C+ +IDDC   PCLNGG C D L  + C+C  TGY G +CE+NID+C  NPC NGA+C
Sbjct: 897  RICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKC 956

Query: 71   VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
            +D+VKDY C+C+ GY GK C  DI ECESNPCQY G CLE SNM+LYQ S +  LPK+F+
Sbjct: 957  LDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNMTLYQMSRITDLPKVFS 1016

Query: 131  QEFNYSTAEG 140
            Q F++  A G
Sbjct: 1017 QPFSFENASG 1026

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
FB|FBgn0259685	2146	crb "crumbs" [Drosophila melan	0.921	0.060	0.576	3.2e-43
UNIPROTKB|F1P3N1	1259	Gga.53999 "Uncharacterized pro	0.865	0.096	0.460	3.2e-31
UNIPROTKB|E2QZC0	376	CRB1 "Uncharacterized protein"	0.822	0.308	0.5	2.3e-30
UNIPROTKB|F5H0L2	1382	CRB1 "Protein crumbs homolog 1	0.865	0.088	0.484	1.5e-29
UNIPROTKB|P82279	1406	CRB1 "Protein crumbs homolog 1	0.865	0.086	0.484	1.5e-29
UNIPROTKB|I3LVI7	504	NOTCH2 "Uncharacterized protei	0.836	0.234	0.5	2.3e-29
UNIPROTKB|F1NRS3	728	DLL1 "Delta-like protein" [Gal	0.709	0.137	0.554	2.5e-29
ZFIN|ZDB-GENE-000329-4	2475	notch2 "notch homolog 2" [Dani	0.709	0.040	0.549	2.6e-29
ZFIN|ZDB-GENE-060612-1	1466	crb2a "crumbs homolog 2a" [Dan	0.836	0.080	0.460	2.7e-29
MGI|MGI:2136343	1405	Crb1 "crumbs homolog 1 (Drosop	0.822	0.082	0.5	3.2e-29

FB|FBgn0259685 crb "crumbs" [Drosophila melanogaster (taxid:7227)]

 Score = 472 (171.2 bits), Expect = 3.2e-43, P = 3.2e-43
 Identities = 75/130 (57%), Positives = 95/130 (73%)

Query:    11 RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
             R+C+ +IDDC   PCLNGG C D L  + C+C  TGY G +CE+NID+C  NPC NGA+C
Sbjct:   756 RICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCELNIDECLSNPCTNGAKC 815

Query:    71 VDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
             +D+VKDY C+C+ GY GK C  DI ECESNPCQY G CLE SN++LYQ S +  LPK+F+
Sbjct:   816 LDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLYQMSRITDLPKVFS 875

Query:   131 QEFNYSTAEG 140
             Q F++  A G
Sbjct:   876 QPFSFENASG 885

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS;IMP

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0016324 "apical plasma membrane" evidence=NAS;IDA;TAS

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS;TAS

GO:0048477 "oogenesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0042052 "rhabdomere development" evidence=NAS;IMP

GO:0045186 "zonula adherens assembly" evidence=IMP;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=IMP

GO:0016327 "apicolateral plasma membrane" evidence=IDA;IPI

GO:0005913 "cell-cell adherens junction" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0045218 "zonula adherens maintenance" evidence=NAS;IMP

GO:0042051 "compound eye photoreceptor development" evidence=IMP;TAS

GO:0045494 "photoreceptor cell maintenance" evidence=NAS;IMP

GO:0016044 "cellular membrane organization" evidence=IMP;TAS

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0035239 "tube morphogenesis" evidence=IMP

GO:0030507 "spectrin binding" evidence=TAS

GO:0035003 "subapical complex" evidence=TAS

GO:0005918 "septate junction" evidence=TAS

GO:0007431 "salivary gland development" evidence=TAS

GO:0008104 "protein localization" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0034332 "adherens junction organization" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0035088 "establishment or maintenance of apical/basal cell polarity" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0061336 "cell morphogenesis involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0016028 "rhabdomere" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0042327 "positive regulation of phosphorylation" evidence=IMP

GO:0035330 "regulation of hippo signaling cascade" evidence=IGI

GO:0046621 "negative regulation of organ growth" evidence=IMP

GO:0035002 "liquid clearance, open tracheal system" evidence=IGI

UNIPROTKB|F1P3N1 Gga.53999 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 3.2e-31, P = 3.2e-31
 Identities = 59/128 (46%), Positives = 81/128 (63%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE +I++C S PC + G C DL+N+Y C+C  TG+ G HCE++I +CA  PC N A CV+
Sbjct:   147 CEVDINECISQPCQHNGTCHDLINSYQCDCSDTGFEGDHCELDILECASEPCLNNATCVE 206

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
              +K+Y C C+ GYTG+ C +D+ EC ++PC  GG C E SN S Y     P  P     +
Sbjct:   207 GIKNYSCACWTGYTGQHCEEDVNECATDPCHNGGVCFERSNQSYY--GSQPDFPS----D 260

Query:   133 FNYSTAEG 140
             F+YS A G
Sbjct:   261 FSYSQAAG 268

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2QZC0 CRB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 59/118 (50%), Positives = 70/118 (59%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE N D+C S PCL+GGLC D  N+Y+CNC  +G+TG HCE  +  C   PC N A C D
Sbjct:   239 CELNADECASQPCLHGGLCVDGYNSYSCNCTGSGFTGTHCETLMPLCWSEPCHNNATCED 298

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
                +Y C C+PGYTG  C   I EC  NPCQ GGTC+E S    Y    L  LP  F+
Sbjct:   299 SADNYTCHCWPGYTGAQCETYINECNGNPCQSGGTCIELSPEKPY--GHLAQLPSSFS 354

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F5H0L2 CRB1 "Protein crumbs homolog 1" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 62/128 (48%), Positives = 75/128 (58%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE N D+C S PCL+GGLC D  N Y+CNC  +G+TG HCE  +  C   PC N A C D
Sbjct:   190 CELNTDECASQPCLHGGLCVDGENRYSCNCTGSGFTGTHCETLMPLCWSKPCHNNATCED 249

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
              V +Y C C+PGYTG  C  D+ EC SNPCQ  G C+E S+   Y R  +  LP      
Sbjct:   250 SVDNYTCHCWPGYTGAQCEIDLNECNSNPCQSNGECVELSSEKQYGR--ITGLPS----S 303

Query:   133 FNYSTAEG 140
             F+Y  A G
Sbjct:   304 FSYHEASG 311

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P82279 CRB1 "Protein crumbs homolog 1" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 62/128 (48%), Positives = 75/128 (58%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE N D+C S PCL+GGLC D  N Y+CNC  +G+TG HCE  +  C   PC N A C D
Sbjct:   259 CELNTDECASQPCLHGGLCVDGENRYSCNCTGSGFTGTHCETLMPLCWSKPCHNNATCED 318

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
              V +Y C C+PGYTG  C  D+ EC SNPCQ  G C+E S+   Y R  +  LP      
Sbjct:   319 SVDNYTCHCWPGYTGAQCEIDLNECNSNPCQSNGECVELSSEKQYGR--ITGLPS----S 372

Query:   133 FNYSTAEG 140
             F+Y  A G
Sbjct:   373 FSYHEASG 380

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0007009 "plasma membrane organization" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

UNIPROTKB|I3LVI7 NOTCH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 328 (120.5 bits), Expect = 2.3e-29, P = 2.3e-29
 Identities = 60/120 (50%), Positives = 73/120 (60%)

Query:    12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
             +C   ID+C S PCLN G C DL+N Y CNCQ  G +G +CEIN DDCA NPC +G  CV
Sbjct:   183 ICSDQIDECYSSPCLNEGRCIDLVNGYQCNCQP-GTSGVNCEINFDDCASNPCVHGV-CV 240

Query:    72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQ 131
             D V  Y C C PG+TG+ C  DI EC SNPC+ G TC+   N       + P  P  ++Q
Sbjct:   241 DGVNRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINDVNGFRCMCPEGPHHPSCYSQ 300

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1NRS3 DLL1 "Delta-like protein" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 56/101 (55%), Positives = 62/101 (61%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE  ID C S PC NG  C DL N+Y C CQ  G+TG HC+ N+DDCA  PC NG  C D
Sbjct:   409 CEKKIDYCSSSPCANGAQCVDLGNSYICQCQ-AGFTGRHCDDNVDDCASFPCVNGGTCQD 467

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
              V DY C C PGY GK C+  +  CE NPC  G TC E SN
Sbjct:   468 GVNDYSCTCPPGYNGKNCSTPVSRCEHNPCHNGATCHERSN 508

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001757 "somite specification" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0005112 "Notch binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007386 "compartment pattern specification" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045608 "negative regulation of auditory receptor cell differentiation" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0070986 "left/right axis specification" evidence=IEA

GO:0072014 "proximal tubule development" evidence=IEA

GO:0072070 "loop of Henle development" evidence=IEA

GO:0097150 "neuronal stem cell maintenance" evidence=IEA

ZFIN|ZDB-GENE-000329-4 notch2 "notch homolog 2" [Danio rerio (taxid:7955)]

 Score = 342 (125.4 bits), Expect = 2.6e-29, P = 2.6e-29
 Identities = 56/102 (54%), Positives = 70/102 (68%)

Query:    12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
             +C   I +C+S PC NGG C D++N Y CNCQ  G  G +C+IN DDCA NPC++G  C 
Sbjct:   604 ICSEQIRECQSDPCQNGGRCVDMVNRYQCNCQP-GTAGENCQINYDDCASNPCQHGT-CE 661

Query:    72 DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
             D + +Y C C PGYTG+ CAD+I EC SNPCQ GGTC +  N
Sbjct:   662 DGINEYKCVCEPGYTGERCADEINECSSNPCQSGGTCEDKVN 703

GO:0030154 "cell differentiation" evidence=IEA

GO:0050793 "regulation of developmental process" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IGI

GO:0060325 "face morphogenesis" evidence=IGI

GO:0042246 "tissue regeneration" evidence=IEP

GO:0001889 "liver development" evidence=IGI

GO:0001946 "lymphangiogenesis" evidence=IMP

ZFIN|ZDB-GENE-060612-1 crb2a "crumbs homolog 2a" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 59/128 (46%), Positives = 79/128 (61%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE NID+CESGPC NGGLC D +++Y C C+ TGY G HCE +I +CA +PC++G  C++
Sbjct:   285 CEINIDECESGPCQNGGLCHDRIDSYECECEGTGYMGDHCEEDIPECASHPCQHGGTCLE 344

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFAQE 132
              +  Y C C+PG+ G  C  DI EC   PC+  G C E SN   ++ +D          E
Sbjct:   345 GINHYNCSCWPGFEGGNCEVDIDECADAPCENDGECFEKSNPEHWE-TDW---------E 394

Query:   133 FNYSTAEG 140
             F Y+TA G
Sbjct:   395 FTYATAVG 402

GO:0005509 "calcium ion binding" evidence=IEA

GO:0045176 "apical protein localization" evidence=IGI

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IEP

MGI|MGI:2136343 Crb1 "crumbs homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 3.2e-29, P = 3.2e-29
 Identities = 59/118 (50%), Positives = 74/118 (62%)

Query:    13 CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             CE ++++CES PCL+GGLC D  N+Y C+C  +G+TG HCE  I  C   PC N A C D
Sbjct:   258 CELSVNECESQPCLHGGLCVDGRNSYHCDCTGSGFTGMHCESLIPLCWSKPCHNDATCED 317

Query:    73 KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPALPKIFA 130
              V  Y+C C PGYTG  C  DI EC SNPCQ+ G C+E S+  LY   +   LP  F+
Sbjct:   318 TVDSYICHCRPGYTGALCETDINECSSNPCQFWGECVELSSEGLY--GNTAGLPSSFS 373

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0007009 "plasma membrane organization" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016044 "cellular membrane organization" evidence=IMP

GO:0042462 "eye photoreceptor cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P10040	CRB_DROME	No assigned EC number	0.5769	0.9148	0.0601	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	2e-07
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	5e-06
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	5e-06
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	2e-04
pfam00008	32	pfam00008, EGF, EGF-like domain	5e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	0.002

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 44.2 bits (105), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 55 NIDDCA-PNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          +ID+CA  NPC+NG  CV+ V  Y C C PGYTG+ C
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 16 NIDDCESG-PCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
          +ID+C SG PC NGG C + + +Y C+C   GYTG +CE
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCSCPP-GYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 55 NIDDCA-PNPCKNGARCVDKVKDYLCECYPGYT-GKTC 90
          +ID+CA  NPC+NG  CV+ V  Y CEC PGYT G+ C
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38

Length = 39

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 16 NIDDCES-GPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
          +ID+C S  PC NGG C + + +Y C C      G +CE
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE 39

Length = 39

>gnl|CDD|215652 pfam00008, EGF, EGF-like domain

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 59 CAPN-PCKNGARCVDKVKDYLCECYPGYTGKT 89
          C+PN PC NG  CVD    Y CEC  GYTGK 
Sbjct: 1  CSPNNPCSNGGTCVDTPGGYTCECPEGYTGKR 32

There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains. Length = 32

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 16/30 (53%), Positives = 17/30 (56%)

Query: 60 APNPCKNGARCVDKVKDYLCECYPGYTGKT 89
          A NPC NG  CV+    Y C C PGYTG  
Sbjct: 4  ASNPCSNGGTCVNTPGSYRCVCPPGYTGDR 33

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
KOG1219|consensus	4289		99.64
KOG1219|consensus	4289		99.34
KOG4289|consensus	2531		99.28
KOG4289|consensus	2531		99.08
KOG1214|consensus	1289		99.03
KOG1217|consensus	487		98.26
KOG1225|consensus	525		98.06
KOG1217|consensus	487		97.99
KOG1214|consensus	1289		97.98
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.91
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.91
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.84
KOG1225|consensus	525		97.82
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.75
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.74
KOG4260|consensus	350		97.72
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.72
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.56
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.43
KOG4260|consensus	350		97.26
smart00181	35	EGF Epidermal growth factor-like domain.	96.88
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.85
smart00181	35	EGF Epidermal growth factor-like domain.	96.84
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.82
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.46
PF12662	24	cEGF: Complement Clr-like EGF-like	96.21
KOG1226|consensus	783		95.92
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	95.75
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	95.32
KOG1226|consensus	783		94.51
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	93.4
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.07
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	92.16
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	91.99
KOG3516|consensus	1306		90.41
KOG3514|consensus	1591		88.79
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	86.62
KOG3516|consensus	1306		84.8
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	83.37
PHA02887	126	EGF-like protein; Provisional	80.45

>KOG1219|consensus

Probab=99.64  E-value=1e-15  Score=122.43  Aligned_cols=104  Identities=38%  Similarity=0.956  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCCCEEeecC-CceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCC-CC
Q psy9687          18 DDCESGPCLNGGLCKDLL-NNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD-IK   95 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~-g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~-~~   95 (141)
                      +.|..+||.+++.|..+. +.|.|.|. +.|.|++|+.++..|..+||..++.|....++|.|.|+.||+|.+|+.+ ++
T Consensus      3865 d~C~~npCqhgG~C~~~~~ggy~CkCp-sqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~~Gi~ 3943 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCP-SQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEARGIS 3943 (4289)
T ss_pred             cccccCcccCCCEecCCCCCceEEeCc-ccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeeccccc
Confidence            789999999999998875 56999999 5999999998999999999999999999999999999999999999988 89


Q ss_pred             CCcCCCCCCCCEEeecCCCcceecCCC
Q psy9687          96 ECESNPCQYGGTCLEHSNMSLYQRSDL  122 (141)
Q Consensus        96 ~c~~~~c~~~~~C~~~~~~~~~~~~~~  122 (141)
                      +|+.++|.+++.|++..+++.|.|.+.
T Consensus      3944 eCs~n~C~~gg~C~n~~gsf~CncT~g 3970 (4289)
T KOG1219|consen 3944 ECSKNVCGTGGQCINIPGSFHCNCTPG 3970 (4289)
T ss_pred             ccccccccCCceeeccCCceEeccChh
Confidence            999999999999999999998888643

>KOG1219|consensus

Probab=99.34  E-value=2.1e-12  Score=104.29  Aligned_cols=88  Identities=40%  Similarity=0.981  Sum_probs=82.3

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcC-CCcCcCCCCCCCCEEeeCCCCeeecC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-IDDCAPNPCKNGARCVDKVKDYLCEC   81 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~-~~~c~~~~c~~~~~c~~~~~~~~c~C   81 (141)
                      .|.++|+|..|+.++.+|..+||..++.|....+.|.|.|+. +|+|.+|+.. +++|..++|..++.|.+..|.|+|.|
T Consensus      3889 kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~-gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~Cnc 3967 (4289)
T KOG1219|consen 3889 KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPN-GYTGKRCEARGISECSKNVCGTGGQCINIPGSFHCNC 3967 (4289)
T ss_pred             eCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCC-CccCceeecccccccccccccCCceeeccCCceEecc
Confidence            488999999999999999999999999999999999999994 9999999876 88999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy9687          82 YPGYTGKTCA   91 (141)
Q Consensus        82 ~~g~~~~~c~   91 (141)
                      .+++.|..|.
T Consensus      3968 T~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3968 TPGILGRTCC 3977 (4289)
T ss_pred             ChhHhcccCc
Confidence            9999887764

>KOG4289|consensus

Probab=99.28  E-value=5.3e-12  Score=98.82  Aligned_cols=102  Identities=36%  Similarity=0.836  Sum_probs=83.9

Q ss_pred             CCCCCCCCCCCCEEeec----------------------CCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCC
Q psy9687          18 DDCESGPCLNGGLCKDL----------------------LNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK   75 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~----------------------~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~   75 (141)
                      +.|...||.+...|+..                      .+.+.|.|+ +||+|..|+..++.|-..||.+++.|....|
T Consensus      1180 niClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCP-pGFTgd~CeTeiDlCYs~pC~nng~C~srEg 1258 (2531)
T KOG4289|consen 1180 NICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCP-PGFTGDYCETEIDLCYSGPCGNNGRCRSREG 1258 (2531)
T ss_pred             chhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCC-CCCCcccccchhHhhhcCCCCCCCceEEecC
Confidence            45666777776666432                      246889999 5999999998899999999999999999999


Q ss_pred             CeeecCCCCCCCCCCCCCCC--CCcCCCCCCCCEEeecCC-CcceecC
Q psy9687          76 DYLCECYPGYTGKTCADDIK--ECESNPCQYGGTCLEHSN-MSLYQRS  120 (141)
Q Consensus        76 ~~~c~C~~g~~~~~c~~~~~--~c~~~~c~~~~~C~~~~~-~~~~~~~  120 (141)
                      +|.|.|.++|+|..|+.+..  .|.++.|.+++.|.+..+ ++.|.|.
T Consensus      1259 gYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp 1306 (2531)
T KOG4289|consen 1259 GYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCP 1306 (2531)
T ss_pred             ceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCC
Confidence            99999999999999976543  588889999999998866 5556554

>KOG4289|consensus

Probab=99.08  E-value=2.1e-10  Score=90.25  Aligned_cols=87  Identities=40%  Similarity=0.906  Sum_probs=75.0

Q ss_pred             eccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC--CcCcCCCCCCCCEEeeC-CCCeeec
Q psy9687           4 LWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI--DDCAPNPCKNGARCVDK-VKDYLCE   80 (141)
Q Consensus         4 ~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~--~~c~~~~c~~~~~c~~~-~~~~~c~   80 (141)
                      |.++|+|..|+.++|.|-..||.+++.|....|.|+|.|.+ +|+|.+|+.+.  ..|.+..|.+++.|++. .+++.|.
T Consensus      1226 CPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrp-g~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~ 1304 (2531)
T KOG4289|consen 1226 CPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRP-GFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCH 1304 (2531)
T ss_pred             CCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecC-CccccceeeecccCccccceecCCCEEeecCCCceecc
Confidence            78999999999999999999999999999999999999995 99999997654  35778889999999876 4668899


Q ss_pred             CCCC-CCCCCCC
Q psy9687          81 CYPG-YTGKTCA   91 (141)
Q Consensus        81 C~~g-~~~~~c~   91 (141)
                      |+.| |.++.|+
T Consensus      1305 Cp~ge~e~prC~ 1316 (2531)
T KOG4289|consen 1305 CPYGEFEDPRCE 1316 (2531)
T ss_pred             CCCcccCCCceE
Confidence            9987 3455553

>KOG1214|consensus

Probab=99.03  E-value=1.8e-09  Score=81.49  Aligned_cols=118  Identities=27%  Similarity=0.696  Sum_probs=84.0

Q ss_pred             eccCCc--ccccccccCCCCCC--CCCCCCEEeecCCceeEecCCCCcc--C--CCCCc-----CCCcCcC--CCCCCCC
Q psy9687           4 LWSQNG--LRLCETNIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYT--G--PHCEI-----NIDDCAP--NPCKNGA   68 (141)
Q Consensus         4 ~~~~~~--g~~C~~~~~~c~~~--~c~~~~~C~~~~g~~~c~c~~~g~~--g--~~c~~-----~~~~c~~--~~c~~~~   68 (141)
                      |..+++  |++|. +.++|...  .|..+++|.+..++|.|.|. .+|.  +  -+|..     .++.|..  ..|...+
T Consensus       720 cs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~-~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~i~g  797 (1289)
T KOG1214|consen  720 CSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECR-SGYEFADDRHTCVLITPPAPANPCEDGSHTCAIAG  797 (1289)
T ss_pred             EeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEe-ecceeccCCcceEEecCCCCCCccccCccccCcCC
Confidence            445554  68886 77888754  39999999999999999987 3653  2  24421     2233432  2354444


Q ss_pred             --EEeeC-CCCeeecCCCCCCCC--CCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCCC
Q psy9687          69 --RCVDK-VKDYLCECYPGYTGK--TCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        69 --~c~~~-~~~~~c~C~~g~~~~--~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                        .|... .+.|.|.|.+||.|+  .| .++|+|.++-|+..++|++..+++.|+|.+.+.
T Consensus       798 ~a~c~~hGgs~y~C~CLPGfsGDG~~c-~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~  857 (1289)
T KOG1214|consen  798 QARCVHHGGSTYSCACLPGFSGDGHQC-TDVDECSPSRCHPAATCYNTPGSFSCRCQPGYY  857 (1289)
T ss_pred             ceEEEecCCceEEEeecCCccCCcccc-ccccccCccccCCCceEecCCCcceeecccCcc
Confidence              34443 345899999999865  55 488999999999999999999999998875543

>KOG1217|consensus

Probab=98.26  E-value=1.2e-05  Score=58.73  Aligned_cols=123  Identities=33%  Similarity=0.703  Sum_probs=88.6

Q ss_pred             eeccCCcccccccccCCCC--CCCCCCCCEEeecCCceeEecCCCCccCCCCCcC-------------------CCcCcC
Q psy9687           3 VLWSQNGLRLCETNIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-------------------IDDCAP   61 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~--~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~-------------------~~~c~~   61 (141)
                      .|..+|.+..|....++|.  ..+|.+.+.|.+..+.|.|.|.+ +|.++.+...                   ...|..
T Consensus       155 ~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~-~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~  233 (487)
T KOG1217|consen  155 SCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPP-GYTGSTCETTGNGGTCVDSVACSCPPGARGPECEV  233 (487)
T ss_pred             eeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCC-CccCCcCcCCCCCceEecceeccCCCCCCCCCccc
Confidence            4778888888875556787  34588889999999999999994 9988776432                   111111


Q ss_pred             --CCCCCC-CEEeeCCCCeeecCCCCCCCCC--CCCCCCCCcCCC-CCCCCEEeecCCCcceecCCCCCCh
Q psy9687          62 --NPCKNG-ARCVDKVKDYLCECYPGYTGKT--CADDIKECESNP-CQYGGTCLEHSNMSLYQRSDLPALP  126 (141)
Q Consensus        62 --~~c~~~-~~c~~~~~~~~c~C~~g~~~~~--c~~~~~~c~~~~-c~~~~~C~~~~~~~~~~~~~~~~~~  126 (141)
                        ..+... +.|.+..+.+.|.|+++|.+..  ...++++|.... |.++++|++..+.+.|.|...+..+
T Consensus       234 ~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~  304 (487)
T KOG1217|consen  234 SIVECASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGR  304 (487)
T ss_pred             ccccccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCC
Confidence              112222 6788888889999999998765  234778888864 8999999998888888776554433

>KOG1225|consensus

Probab=98.06  E-value=2.2e-05  Score=58.01  Aligned_cols=76  Identities=33%  Similarity=0.809  Sum_probs=51.0

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECY   82 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~   82 (141)
                      +|.++|+|..|.+  -.|... |..++.+.+.    .|.|.+ +|.|+.|.  +..| +..|+.++.|.  .+  .|.|.
T Consensus       268 IC~~Gf~G~dC~e--~~Cp~~-cs~~g~~~~g----~CiC~~-g~~G~dCs--~~~c-padC~g~G~Ci--~G--~C~C~  332 (525)
T KOG1225|consen  268 ICPPGFTGDDCDE--LVCPVD-CSGGGVCVDG----ECICNP-GYSGKDCS--IRRC-PADCSGHGKCI--DG--ECLCD  332 (525)
T ss_pred             eCCCCCcCCCCCc--ccCCcc-cCCCceecCC----EeecCC-Cccccccc--cccC-CccCCCCCccc--CC--ceEeC
Confidence            4778888888852  335444 6555555543    888885 88888884  3334 45688888887  23  28888


Q ss_pred             CCCCCCCCCCC
Q psy9687          83 PGYTGKTCADD   93 (141)
Q Consensus        83 ~g~~~~~c~~~   93 (141)
                      +||.|..|...
T Consensus       333 ~Gy~G~~C~~~  343 (525)
T KOG1225|consen  333 EGYTGELCIQR  343 (525)
T ss_pred             CCCcCCccccc
Confidence            99988887533

>KOG1217|consensus

Probab=97.99  E-value=0.0001  Score=53.87  Aligned_cols=117  Identities=32%  Similarity=0.795  Sum_probs=83.4

Q ss_pred             ccCCcccc--cccccCCCCCCC-CCCCCEEeecCCceeEecCCCCccCCCC--CcCCCcCc----CCCCCCCCEE--eeC
Q psy9687           5 WSQNGLRL--CETNIDDCESGP-CLNGGLCKDLLNNYTCNCQQTGYTGPHC--EINIDDCA----PNPCKNGARC--VDK   73 (141)
Q Consensus         5 ~~~~~g~~--C~~~~~~c~~~~-c~~~~~C~~~~g~~~c~c~~~g~~g~~c--~~~~~~c~----~~~c~~~~~c--~~~   73 (141)
                      ..+|.+..  ...++++|.... |.+++.|.+..+.|.|.|. ++|.+..+  ..+...|.    ..+|..+..|  ...
T Consensus       257 ~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~-~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~  335 (487)
T KOG1217|consen  257 PEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCP-PGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGS  335 (487)
T ss_pred             CCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCC-CCCCCCCCccccccccccccccCCcCCCCcccccCCC
Confidence            44555554  223678888764 8888999999888999999 49998887  22334553    3446666666  333


Q ss_pred             CCCeeecCCCCCCCCCCCCCCCCCcCCCCCCCCEEee-cCCCcceecCCC
Q psy9687          74 VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE-HSNMSLYQRSDL  122 (141)
Q Consensus        74 ~~~~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~~C~~-~~~~~~~~~~~~  122 (141)
                      .+.+.|.|..+|.+..|+...++|...++..++.|+. ..+.+.|.+...
T Consensus       336 ~~~~~C~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~  385 (487)
T KOG1217|consen  336 FGGFRCACGPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAG  385 (487)
T ss_pred             CCCCCcCCCCCCCCCccccCCccccCCccccCCEeccCCCCCeEecCCCc
Confidence            4457799999999999963335898888999999998 577777777643

>KOG1214|consensus

Probab=97.98  E-value=3.2e-05  Score=59.44  Aligned_cols=92  Identities=27%  Similarity=0.756  Sum_probs=62.2

Q ss_pred             EEeecCC-ceeEecCCCCccC--CCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCC--CCCCC---CCCCcCC-
Q psy9687          30 LCKDLLN-NYTCNCQQTGYTG--PHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGK--TCADD---IKECESN-  100 (141)
Q Consensus        30 ~C~~~~g-~~~c~c~~~g~~g--~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~--~c~~~---~~~c~~~-  100 (141)
                      +|....+ .|.|.|.+ ||.|  ..|. +.++|.+..|...+.|.++.+++.|.|.+||.|+  +|..+   .+.|... 
T Consensus       800 ~c~~hGgs~y~C~CLP-GfsGDG~~c~-dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf~CVP~~~~~T~C~~er  877 (1289)
T KOG1214|consen  800 RCVHHGGSTYSCACLP-GFSGDGHQCT-DVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCVPDTSSLTPCEQER  877 (1289)
T ss_pred             EEEecCCceEEEeecC-CccCCccccc-cccccCccccCCCceEecCCCcceeecccCccCCCceecCCCccCCcccccc
Confidence            3544443 58999995 9985  4675 6799999999999999999999999999999754  45433   2334433 


Q ss_pred             ----CCCCCCEEeec--CCCcceecCCCC
Q psy9687         101 ----PCQYGGTCLEH--SNMSLYQRSDLP  123 (141)
Q Consensus       101 ----~c~~~~~C~~~--~~~~~~~~~~~~  123 (141)
                          .|+..+.|...  .+.+.+.+++.+
T Consensus       878 ~hpl~chg~t~~~~~~Dp~~~e~p~~~~p  906 (1289)
T KOG1214|consen  878 FHPLQCHGSTGFCWCVDPDGHEVPGTQTP  906 (1289)
T ss_pred             ccceeeccccceeEeeCCCcccCCCCCCC
Confidence                26655544333  334455554433

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.91  E-value=1.7e-05  Score=38.65  Aligned_cols=32  Identities=38%  Similarity=1.073  Sum_probs=22.3

Q ss_pred             ccCCCCCC--CCCCCCEEeecCCceeEecCCCCcc
Q psy9687          16 NIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        16 ~~~~c~~~--~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      |++||...  .|...+.|+|+.|+|.|.|.+ ||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~-Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPP-GYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEEST-TEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCC-CcE
Confidence            45667643  376677788888888888874 775

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.91  E-value=2.9e-05  Score=36.90  Aligned_cols=35  Identities=51%  Similarity=1.321  Sum_probs=22.9

Q ss_pred             cCCCCC-CCCCCCCEEeecCCceeEecCCCCcc-CCCC
Q psy9687          17 IDDCES-GPCLNGGLCKDLLNNYTCNCQQTGYT-GPHC   52 (141)
Q Consensus        17 ~~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~-g~~c   52 (141)
                      +++|.. .+|.+++.|.+..+.|.|.|.+ +|. |..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~-g~~~g~~C   38 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPP-GYTDGRNC   38 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCC-CCccCCcC
Confidence            355655 5676666777777777777773 776 5554

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.84  E-value=2.1e-05  Score=36.01  Aligned_cols=29  Identities=59%  Similarity=1.255  Sum_probs=19.1

Q ss_pred             CCCCCCCCCEEeecC-CceeEecCCCCccCC
Q psy9687          21 ESGPCLNGGLCKDLL-NNYTCNCQQTGYTGP   50 (141)
Q Consensus        21 ~~~~c~~~~~C~~~~-g~~~c~c~~~g~~g~   50 (141)
                      .+.||.++++|+... +.|.|.|.+ +|+|+
T Consensus         2 ~~~~C~n~g~C~~~~~~~y~C~C~~-G~~G~   31 (32)
T PF00008_consen    2 SSNPCQNGGTCIDLPGGGYTCECPP-GYTGK   31 (32)
T ss_dssp             TTTSSTTTEEEEEESTSEEEEEEBT-TEEST
T ss_pred             CCCcCCCCeEEEeCCCCCEEeECCC-CCccC
Confidence            345677777777666 667777773 77664

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG1225|consensus

Probab=97.82  E-value=0.00018  Score=53.35  Aligned_cols=91  Identities=35%  Similarity=0.830  Sum_probs=58.7

Q ss_pred             CeeeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeec
Q psy9687           1 MEVLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCE   80 (141)
Q Consensus         1 ~~~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~   80 (141)
                      |..|..+|.|..|.  ...|... |...+.|+..    .|.|. +||+|..|.  ...|... |+.++.+++.    .|.
T Consensus       235 ic~c~~~~~g~~c~--~~~C~~~-c~~~g~c~~G----~CIC~-~Gf~G~dC~--e~~Cp~~-cs~~g~~~~g----~Ci  299 (525)
T KOG1225|consen  235 ICECPEGYFGPLCS--TIYCPGG-CTGRGQCVEG----RCICP-PGFTGDDCD--ELVCPVD-CSGGGVCVDG----ECI  299 (525)
T ss_pred             eeecCCceeCCccc--cccCCCC-CcccceEeCC----eEeCC-CCCcCCCCC--cccCCcc-cCCCceecCC----Eee
Confidence            34556666677664  1223322 4444567654    89999 499999994  3456444 7777776543    499


Q ss_pred             CCCCCCCCCCCCCCCCCcCCCCCCCCEEe
Q psy9687          81 CYPGYTGKTCADDIKECESNPCQYGGTCL  109 (141)
Q Consensus        81 C~~g~~~~~c~~~~~~c~~~~c~~~~~C~  109 (141)
                      |+++|.|..|+  +..|. ..|+.++.|+
T Consensus       300 C~~g~~G~dCs--~~~cp-adC~g~G~Ci  325 (525)
T KOG1225|consen  300 CNPGYSGKDCS--IRRCP-ADCSGHGKCI  325 (525)
T ss_pred             cCCCccccccc--cccCC-ccCCCCCccc
Confidence            99999998884  23343 4577777776

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.75  E-value=7.9e-05  Score=35.36  Aligned_cols=35  Identities=63%  Similarity=1.480  Sum_probs=27.3

Q ss_pred             CCcCcC-CCCCCCCEEeeCCCCeeecCCCCCC-CCCC
Q psy9687          56 IDDCAP-NPCKNGARCVDKVKDYLCECYPGYT-GKTC   90 (141)
Q Consensus        56 ~~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~-~~~c   90 (141)
                      +++|.. .+|..++.|.+..++|.|.|+++|. +..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C   38 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC   38 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence            355655 5788788999999999999999987 6554

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.74  E-value=1.8e-05  Score=36.16  Aligned_cols=29  Identities=59%  Similarity=1.323  Sum_probs=23.8

Q ss_pred             cCCCCCCCCEEeeCC-CCeeecCCCCCCCC
Q psy9687          60 APNPCKNGARCVDKV-KDYLCECYPGYTGK   88 (141)
Q Consensus        60 ~~~~c~~~~~c~~~~-~~~~c~C~~g~~~~   88 (141)
                      ...+|.+++.|+... +.|.|.|++||.|+
T Consensus         2 ~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    2 SSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            456788889998887 88999999998874

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG4260|consensus

Probab=97.72  E-value=6.8e-05  Score=50.59  Aligned_cols=30  Identities=43%  Similarity=1.098  Sum_probs=19.7

Q ss_pred             CCCCCCCCEEee---cCCceeEecCCCCccCCCC
Q psy9687          22 SGPCLNGGLCKD---LLNNYTCNCQQTGYTGPHC   52 (141)
Q Consensus        22 ~~~c~~~~~C~~---~~g~~~c~c~~~g~~g~~c   52 (141)
                      ..||.-++.|..   ..|+-.|.|. +||.|+.|
T Consensus       149 er~C~GnG~C~GdGsR~GsGkCkC~-~GY~Gp~C  181 (350)
T KOG4260|consen  149 ERPCFGNGSCHGDGSREGSGKCKCE-TGYTGPLC  181 (350)
T ss_pred             cCCcCCCCcccCCCCCCCCCccccc-CCCCCccc
Confidence            356777777752   3456678888 48877665

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.72  E-value=2.8e-05  Score=37.91  Aligned_cols=32  Identities=41%  Similarity=1.063  Sum_probs=25.4

Q ss_pred             CCCcCcC--CCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          55 NIDDCAP--NPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        55 ~~~~c~~--~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ++++|..  ..|...+.|+++.|+|.|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            3566753  3477788999999999999999986

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.56  E-value=0.00021  Score=33.49  Aligned_cols=34  Identities=50%  Similarity=1.321  Sum_probs=21.0

Q ss_pred             CCCCC-CCCCCCCEEeecCCceeEecCCCCccCCCC
Q psy9687          18 DDCES-GPCLNGGLCKDLLNNYTCNCQQTGYTGPHC   52 (141)
Q Consensus        18 ~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c   52 (141)
                      ++|.. .+|.+++.|.+..+.|.|.|.+ +|.|..|
T Consensus         3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~-g~~g~~C   37 (38)
T cd00054           3 DECASGNPCQNGGTCVNTVGSYRCSCPP-GYTGRNC   37 (38)
T ss_pred             ccCCCCCCcCCCCEeECCCCCeEeECCC-CCcCCcC
Confidence            44544 4566666677666667777763 6666554

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.43  E-value=0.00038  Score=32.53  Aligned_cols=34  Identities=59%  Similarity=1.451  Sum_probs=26.4

Q ss_pred             CcCcC-CCCCCCCEEeeCCCCeeecCCCCCCCCCC
Q psy9687          57 DDCAP-NPCKNGARCVDKVKDYLCECYPGYTGKTC   90 (141)
Q Consensus        57 ~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~~~~c   90 (141)
                      ++|.. .+|..++.|.+..+.|.|.|+.+|.|..|
T Consensus         3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054           3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             ccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence            44554 56777788998888999999999987654

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG4260|consensus

Probab=97.26  E-value=0.00016  Score=48.81  Aligned_cols=76  Identities=20%  Similarity=0.598  Sum_probs=52.8

Q ss_pred             eccCCc--ccccccccCCCCC--CCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCc---CCCCCCCCEEeeCCCC
Q psy9687           4 LWSQNG--LRLCETNIDDCES--GPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCA---PNPCKNGARCVDKVKD   76 (141)
Q Consensus         4 ~~~~~~--g~~C~~~~~~c~~--~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~---~~~c~~~~~c~~~~~~   76 (141)
                      |..+|.  -..|. |+++|..  .||.....|+|+.|+|.|...+ ||.+-     .++|.   ..--..+..|+++.+.
T Consensus       222 CkkGW~lde~gCv-DvnEC~~ep~~c~~~qfCvNteGSf~C~dk~-Gy~~g-----~d~C~~~~d~~~~kn~~c~ni~~~  294 (350)
T KOG4260|consen  222 CKKGWKLDEEGCV-DVNECQNEPAPCKAHQFCVNTEGSFKCEDKE-GYKKG-----VDECQFCADVCASKNRPCMNIDGQ  294 (350)
T ss_pred             hcccceecccccc-cHHHHhcCCCCCChhheeecCCCceEecccc-cccCC-----hHHhhhhhhhcccCCCCcccCCcc
Confidence            445564  24554 8899975  4588888999999999999984 88642     22332   1112345678899999


Q ss_pred             eeecCCCCCC
Q psy9687          77 YLCECYPGYT   86 (141)
Q Consensus        77 ~~c~C~~g~~   86 (141)
                      |+|+|..++.
T Consensus       295 ~r~v~f~~~~  304 (350)
T KOG4260|consen  295 YRCVCFSGLI  304 (350)
T ss_pred             EEEEecccce
Confidence            9999988763

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.88  E-value=0.0028  Score=29.16  Aligned_cols=25  Identities=56%  Similarity=1.322  Sum_probs=14.8

Q ss_pred             CCCCCCCEEeecCCceeEecCCCCccC
Q psy9687          23 GPCLNGGLCKDLLNNYTCNCQQTGYTG   49 (141)
Q Consensus        23 ~~c~~~~~C~~~~g~~~c~c~~~g~~g   49 (141)
                      .+|.++ .|.+..+.|.|.|.+ ||.+
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~-g~~g   30 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPP-GYTG   30 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCC-CCcc
Confidence            345555 666666666666663 6655

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.85  E-value=0.0033  Score=28.73  Aligned_cols=27  Identities=48%  Similarity=1.154  Sum_probs=16.5

Q ss_pred             CCCCCCCEEeecCCceeEecCCCCccCC
Q psy9687          23 GPCLNGGLCKDLLNNYTCNCQQTGYTGP   50 (141)
Q Consensus        23 ~~c~~~~~C~~~~g~~~c~c~~~g~~g~   50 (141)
                      .+|.+++.|.+..+.|.|.|.. +|.+.
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~-g~~g~   32 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPP-GYTGD   32 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCC-CCccc
Confidence            4455556666666666676663 66554

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.84  E-value=0.003  Score=29.03  Aligned_cols=28  Identities=54%  Similarity=1.385  Sum_probs=22.3

Q ss_pred             CCCCCCCEEeeCCCCeeecCCCCCCC-CCC
Q psy9687          62 NPCKNGARCVDKVKDYLCECYPGYTG-KTC   90 (141)
Q Consensus        62 ~~c~~~~~c~~~~~~~~c~C~~g~~~-~~c   90 (141)
                      .+|..+ .|.+..+.|.|.|++||.+ ..|
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~~~C   34 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPPGYTGDKRC   34 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCCCCccCCcc
Confidence            457666 8888888999999999987 443

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.82  E-value=0.0033  Score=28.70  Aligned_cols=28  Identities=54%  Similarity=1.238  Sum_probs=22.8

Q ss_pred             CCCCCCCCEEeeCCCCeeecCCCCCCCC
Q psy9687          61 PNPCKNGARCVDKVKDYLCECYPGYTGK   88 (141)
Q Consensus        61 ~~~c~~~~~c~~~~~~~~c~C~~g~~~~   88 (141)
                      ..+|..++.|.+..+.|.|.|+.+|.+.
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence            3457677889888888999999999876

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.46  E-value=0.0019  Score=30.23  Aligned_cols=25  Identities=40%  Similarity=1.038  Sum_probs=14.8

Q ss_pred             CCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          63 PCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        63 ~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      .|+.++.|.++.+.|.|.|.+||.|
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~Gy~G   31 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKPGYEG   31 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred             CCCCCcEeecCCCCEEeECCCCCcc
Confidence            3566667777766777777777655

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.21  E-value=0.0056  Score=25.89  Aligned_cols=10  Identities=60%  Similarity=1.617  Sum_probs=5.5

Q ss_pred             eeecCCCCCC
Q psy9687          77 YLCECYPGYT   86 (141)
Q Consensus        77 ~~c~C~~g~~   86 (141)
                      |.|.|++||.
T Consensus         2 y~C~C~~Gy~   11 (24)
T PF12662_consen    2 YTCSCPPGYQ   11 (24)
T ss_pred             EEeeCCCCCc
Confidence            4555555553

>KOG1226|consensus

Probab=95.92  E-value=0.06  Score=41.77  Aligned_cols=88  Identities=30%  Similarity=0.582  Sum_probs=49.3

Q ss_pred             eeccCCcccccccccCC---------CCC---C-CCCCCCEEeecCCceeEecCCCCc----cCCCCCcCCCcCc---CC
Q psy9687           3 VLWSQNGLRLCETNIDD---------CES---G-PCLNGGLCKDLLNNYTCNCQQTGY----TGPHCEINIDDCA---PN   62 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~---------c~~---~-~c~~~~~C~~~~g~~~c~c~~~g~----~g~~c~~~~~~c~---~~   62 (141)
                      .|..+|.|+.|+=..+.         |..   . +|...+.|.=.    .|.|.+ ..    .|+.|+-+...|.   ..
T Consensus       481 ~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~-~~~~~i~G~fCECDnfsC~r~~g~  555 (783)
T KOG1226|consen  481 RCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHK-PDNGKIYGKFCECDNFSCERHKGV  555 (783)
T ss_pred             ecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecC-CCCCceeeeeeeccCcccccccCc
Confidence            37789999999622211         211   1 24444444322    566663 33    3777764444443   23


Q ss_pred             CCCCCCEEeeCCCCeeecCCCCCCCCCCC--CCCCCCcC
Q psy9687          63 PCKNGARCVDKVKDYLCECYPGYTGKTCA--DDIKECES   99 (141)
Q Consensus        63 ~c~~~~~c~~~~~~~~c~C~~g~~~~~c~--~~~~~c~~   99 (141)
                      .|..++.|.=.    .|+|.+||+|..|.  .+.+.|..
T Consensus       556 lC~g~G~C~CG----~CvC~~GwtG~~C~C~~std~C~~  590 (783)
T KOG1226|consen  556 LCGGHGRCECG----RCVCNPGWTGSACNCPLSTDTCES  590 (783)
T ss_pred             ccCCCCeEeCC----cEEcCCCCccCCCCCCCCCccccC
Confidence            47777777432    38999999988764  23444543

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=95.75  E-value=0.013  Score=27.37  Aligned_cols=26  Identities=35%  Similarity=0.915  Sum_probs=19.6

Q ss_pred             CCCCCCEEeecCCceeEecCCCCccCC
Q psy9687          24 PCLNGGLCKDLLNNYTCNCQQTGYTGP   50 (141)
Q Consensus        24 ~c~~~~~C~~~~g~~~c~c~~~g~~g~   50 (141)
                      .|..++.|.++.+++.|.|.+ ||.|.
T Consensus         7 ~C~~nA~C~~~~~~~~C~C~~-Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTGGSYTCTCKP-GYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-TTSEEEEE-C-EEECC
T ss_pred             CCCCCcEeecCCCCEEeECCC-CCccC
Confidence            477889999999999999994 99864

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=95.32  E-value=0.0062  Score=21.80  Aligned_cols=10  Identities=60%  Similarity=1.610  Sum_probs=4.1

Q ss_pred             ecCCCCCCCC
Q psy9687          79 CECYPGYTGK   88 (141)
Q Consensus        79 c~C~~g~~~~   88 (141)
                      |.|++||.|.
T Consensus         2 C~C~~G~~G~   11 (13)
T PF12661_consen    2 CQCPPGWTGP   11 (13)
T ss_dssp             EEE-TTEETT
T ss_pred             ccCcCCCcCC
Confidence            4444444443

>KOG1226|consensus

Probab=94.51  E-value=0.3  Score=38.14  Aligned_cols=75  Identities=29%  Similarity=0.721  Sum_probs=44.2

Q ss_pred             ccccccccCCCCCC---CCCCCCEEeecCCceeEecCCCCccCCCCCc--CCCcCcC---CCCCCCCEEeeCCCCeeecC
Q psy9687          10 LRLCETNIDDCESG---PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI--NIDDCAP---NPCKNGARCVDKVKDYLCEC   81 (141)
Q Consensus        10 g~~C~~~~~~c~~~---~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~--~~~~c~~---~~c~~~~~c~~~~~~~~c~C   81 (141)
                      |+.|+-|--.|..+   .|..++.|.-.    .|.|. +||+|+.|.-  +.+.|..   ..|...+.|.=.    .|.|
T Consensus       539 G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~-~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C  609 (783)
T KOG1226|consen  539 GKFCECDNFSCERHKGVLCGGHGRCECG----RCVCN-PGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKC  609 (783)
T ss_pred             eeeeeccCcccccccCcccCCCCeEeCC----cEEcC-CCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEc
Confidence            78886443334332   26666666543    78898 5999998753  3345542   225555555322    2667


Q ss_pred             CCC-CCCCCCCCC
Q psy9687          82 YPG-YTGKTCADD   93 (141)
Q Consensus        82 ~~g-~~~~~c~~~   93 (141)
                      ... |.|..|+..
T Consensus       610 ~~~~~sG~~CE~c  622 (783)
T KOG1226|consen  610 TDPPYSGEFCEKC  622 (783)
T ss_pred             CCCCcCcchhhcC
Confidence            665 888887543

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=93.40  E-value=0.16  Score=23.05  Aligned_cols=25  Identities=36%  Similarity=0.737  Sum_probs=14.6

Q ss_pred             CCCCCCEEeeCCCCeeecCCCCCCCCC
Q psy9687          63 PCKNGARCVDKVKDYLCECYPGYTGKT   89 (141)
Q Consensus        63 ~c~~~~~c~~~~~~~~c~C~~g~~~~~   89 (141)
                      .|..++.|+..  ...|.|.++|.|+.
T Consensus         7 ~C~~~G~C~~~--~g~C~C~~g~~G~~   31 (32)
T PF07974_consen    7 ICSGHGTCVSP--CGRCVCDSGYTGPD   31 (32)
T ss_pred             ccCCCCEEeCC--CCEEECCCCCcCCC
Confidence            35566666543  22477777776654

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.07  E-value=0.071  Score=35.59  Aligned_cols=37  Identities=32%  Similarity=0.657  Sum_probs=18.2

Q ss_pred             CCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          49 GPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        49 g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      +..|. +.++|...+......|.++.|.|.|.|+.||.
T Consensus       181 ~~~C~-~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~  217 (224)
T cd01475         181 GKICV-VPDLCATLSHVCQQVCISTPGSYLCACTEGYA  217 (224)
T ss_pred             cccCc-CchhhcCCCCCccceEEcCCCCEEeECCCCcc
Confidence            44443 44444322222223566666666666666664

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=92.16  E-value=0.12  Score=24.14  Aligned_cols=19  Identities=42%  Similarity=1.041  Sum_probs=15.4

Q ss_pred             CEEeeCCCCeeecCCCCCC
Q psy9687          68 ARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        68 ~~c~~~~~~~~c~C~~g~~   86 (141)
                      ..|++..++|.|.|++||.
T Consensus        10 h~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   10 HICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             SEEEEETTSEEEE-STTEE
T ss_pred             CCCccCCCceEeECCCCCE
Confidence            4788888999999999985

...

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=91.99  E-value=0.24  Score=33.08  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCCCC
Q psy9687          87 GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPAL  125 (141)
Q Consensus        87 ~~~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~~~  125 (141)
                      +..|. +.++|...+......|.+..++|.|.|+..+..
T Consensus       181 ~~~C~-~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         181 GKICV-VPDLCATLSHVCQQVCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             cccCc-CchhhcCCCCCccceEEcCCCCEEeECCCCccC
Confidence            34453 666776544334468999999999988866543

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG3516|consensus

Probab=90.41  E-value=0.31  Score=39.89  Aligned_cols=41  Identities=39%  Similarity=1.005  Sum_probs=34.8

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~   56 (141)
                      -.+.|.+++|.+++.|..+...|.|.|...||.|.+|.+.+
T Consensus       544 i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCHtsi  584 (1306)
T KOG3516|consen  544 ISDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGATCHTSI  584 (1306)
T ss_pred             cccccCCccccCCCcccccccceeEeccccccccccccCCC
Confidence            35778899999999999988899999986699999986544

>KOG3514|consensus

Probab=88.79  E-value=0.34  Score=39.45  Aligned_cols=36  Identities=47%  Similarity=1.116  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCc
Q psy9687          19 DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        19 ~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~   54 (141)
                      .|.++||.+++.|......|.|.|...+|.|+.|+.
T Consensus       625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~~Cer  660 (1591)
T KOG3514|consen  625 ICESNPCQNGGKCSEGWNRFICDCSGTGFEGRTCER  660 (1591)
T ss_pred             ccCCCcccCCCCccccccccccccccCcccCccccc
Confidence            688999999999999999999999867899999974

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=86.62  E-value=0.45  Score=22.30  Aligned_cols=26  Identities=27%  Similarity=0.608  Sum_probs=15.7

Q ss_pred             CCCCCCCCEEeeCC-CCeeecCCCCCC
Q psy9687          61 PNPCKNGARCVDKV-KDYLCECYPGYT   86 (141)
Q Consensus        61 ~~~c~~~~~c~~~~-~~~~c~C~~g~~   86 (141)
                      ...|..++.|.... |...|+|..||.
T Consensus         4 ~~~cP~NA~C~~~~dG~eecrCllgyk   30 (37)
T PF12946_consen    4 DTKCPANAGCFRYDDGSEECRCLLGYK   30 (37)
T ss_dssp             SS---TTEEEEEETTSEEEEEE-TTEE
T ss_pred             CccCCCCcccEEcCCCCEEEEeeCCcc
Confidence            34466677787766 677788888875

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>KOG3516|consensus

Probab=84.80  E-value=1.2  Score=36.82  Aligned_cols=38  Identities=47%  Similarity=1.175  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcC
Q psy9687          18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN   55 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~   55 (141)
                      .-|.+.+|.+++.|......|+|.|....|.|..|..+
T Consensus       956 GhCss~~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~e  993 (1306)
T KOG3516|consen  956 GHCSSYPCLNGGHCVERYDGYTCDCSRTAYDGPFCSKE  993 (1306)
T ss_pred             cccccccccCCCEEEEecCceeeccccCcCCCCccccc
Confidence            44788899999999999999999998667889988644

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=83.37  E-value=1.5  Score=26.68  Aligned_cols=27  Identities=41%  Similarity=1.117  Sum_probs=16.9

Q ss_pred             CCCCCEEeec--CCceeEecCCCCccCCCCC
Q psy9687          25 CLNGGLCKDL--LNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        25 c~~~~~C~~~--~g~~~c~c~~~g~~g~~c~   53 (141)
                      |.++ .|.-.  ...+.|.|.. ||.|..|+
T Consensus        53 ClHG-~C~yI~dl~~~~CrC~~-GYtGeRCE   81 (139)
T PHA03099         53 CLHG-DCIHARDIDGMYCRCSH-GYTGIRCQ   81 (139)
T ss_pred             eECC-EEEeeccCCCceeECCC-Cccccccc
Confidence            5554 56433  2456777774 78777775

>PHA02887 EGF-like protein; Provisional

Probab=80.45  E-value=2.1  Score=25.58  Aligned_cols=25  Identities=32%  Similarity=0.969  Sum_probs=18.9

Q ss_pred             CCEEee--CCCCeeecCCCCCCCCCCC
Q psy9687          67 GARCVD--KVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        67 ~~~c~~--~~~~~~c~C~~g~~~~~c~   91 (141)
                      ++.|.-  ......|.|..||.|.+|+
T Consensus        96 HG~C~yI~dL~epsCrC~~GYtG~RCE  122 (126)
T PHA02887         96 NGECMNIIDLDEKFCICNKGYTGIRCD  122 (126)
T ss_pred             CCEEEccccCCCceeECCCCcccCCCC
Confidence            457743  3455779999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		1e-18
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		3e-18
4d90_A	143	Crystal Structure Of Del-1 Egf Domains Length = 143		2e-09
1x7a_L	146	Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)		4e-07
1pfx_L	146	Porcine Factor Ixa Length = 146		2e-06
1nfu_B	195	Crystal Structure Of Human Coagulation Factor Xa Co		3e-05
2h9e_L	149	Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMP		4e-05
3h5c_B	317	X-Ray Structure Of Protein Z-Protein Z Inhibitor Co		5e-05
3qcw_A	1245	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		1e-04
3r05_A	1254	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		1e-04
1ht5_A	551	The 2.75 Angstrom Resolution Model Of Ovine Cox-1 C		1e-04
1ezq_B	134	Crystal Structure Of Human Coagulation Factor Xa Co		1e-04
1ebv_A	551	Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid		1e-04
1prh_A	554	The X-Ray Crystal Structure Of The Membrane Protein		1e-04
1o5d_L	152	Dissecting And Designing Inhibitor Selectivity Dete		1e-04
1u67_A	600	Crystal Structure Of Arachidonic Acid Bound To A Mu		2e-04
1pth_A	576	The Structural Basis Of Aspirin Activity Inferred F		2e-04
3n8y_B	553	Structure Of Aspirin Acetylated Cyclooxygenase-1 In		2e-04
2oye_P	600	Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To		2e-04
1diy_A	553	Crystal Structure Of Arachidonic Acid Bound In The		2e-04
1pge_A	576	Prostaglandin H2 Synthase-1 Complexed With P-(2'-Io		2e-04
3n8w_B	553	Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1 H		2e-04
1cqe_A	580	Prostaglandin H2 Synthase-1 Complex With Flurbiprof		2e-04
3poy_A	1019	Crystal Structure Of The Alpha-Neurexin-1 Ectodomai		2e-04
1bf9_A	41	N-Terminal Egf-Like Domain From Human Factor Vii, N		2e-04
1f7e_A	46	The First Egf-Like Domain From Human Blood Coagulat		2e-04
1z6j_L	142	Crystal Structure Of A Ternary Complex Of Factor Vi		2e-04
1w0y_L	142	Tf7a_3771 Complex Length = 142		2e-04
1dan_L	152	Complex Of Active Site Inhibited Human Blood Coagul		2e-04
1p0s_L	138	Crystal Structure Of Blood Coagulation Factor Xa In		2e-04
1edm_B	39	Epidermal Growth Factor-Like Domain From Human Fact		2e-04
1dva_L	101	Crystal Structure Of The Complex Between The Peptid		2e-04
1j9c_L	95	Crystal Structure Of Tissue Factor-Factor Viia Comp		2e-04
2rqz_A	38	Structure Of Sugar Modified Epidermal Growth Factor		3e-04
1fax_L	96	Coagulation Factor Xa Inhibitor Complex Length = 96		4e-04
1g2l_B	94	Factor Xa Inhibitor Complex Length = 94		4e-04
1ioe_L	96	Human Coagulation Factor Xa In Complex With M55532		4e-04
3ens_A	94	Crystal Structure Of Human Fxa In Complex With Meth		4e-04
1apo_A	42	Three-Dimensional Structure Of The Apo Form Of The		8e-04
2puq_L	94	Crystal Structure Of Active Site Inhibited Coagulat		9e-04

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 16  NIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
           ++D+C  G  PC + G C + L ++ C C Q GYTGP CEI++++C  NPC+N A C+D+
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 74  VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           + ++ C C PGY G  C  +  EC S+PC + G CL+  N
Sbjct: 63  IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 102

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 16  NIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
           ++D+C  G  PC + G C + L ++ C C Q GYTGP CEI++++C  NPC+N A C+D+
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 74  VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           + ++ C C PGY G  C  +  EC S+PC + G CL+  N
Sbjct: 61  IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 100

>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 18  DDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHC----EINIDD--------CAPNP 63
           D C+  PC NGG+C   L   +++C C   G+T P+C    E+  D+        C PNP
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPD-GFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59
Query: 64  CKNGARCV-------DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
           C NG  C        D    Y+C+C  G+ G  C  +I ECE  PC+ GG C +
Sbjct: 60  CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTD 113

>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino) Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2- Fluorophenyl]- 3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide Length = 146

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNP-----CKNGARCVD 72
           D CE  PCLNGGLCKD +N+Y C C Q G+ G +CE++      N      CK GA    
Sbjct: 49  DQCEPNPCLNGGLCKDDINSYECWC-QVGFEGKNCELDATCNIKNGRCKQFCKTGAD--- 104
Query: 73  KVKDYLCECYPGYTGKTCADDIKECE-SNPCQYGGTCLEHSNMSLYQ 118
                LC C  GY     A D K C+ + P   G   + HS  +L +
Sbjct: 105 --SKVLCSCTTGY---RLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR 146

>pdb|1PFX|L Chain L, Porcine Factor Ixa Length = 146

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNP-----CKNGARCVD 72
           D CE  PCLNGGLCK  +N+Y C C Q G+ G +CE++      N      CK GA    
Sbjct: 49  DQCEPNPCLNGGLCKXDINSYECWC-QVGFEGKNCELDATCNIKNGRCKQFCKTGAD--- 104
Query: 73  KVKDYLCECYPGYTGKTCADDIKECE-SNPCQYGGTCLEHSNMSLYQ 118
                LC C  GY     A D K C+ + P   G   + HS  +L +
Sbjct: 105 --SKVLCSCTTGY---RLAPDQKSCKPAVPFPCGRVSVSHSPTTLTR 146

>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr132747 Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
           D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 43  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 77  YLCECYPGYTGKTCADDIKEC-ESNPCQYGGTCLEHSNMSLYQ 118
            +C C  GY   T AD+ K C  + P   G   LE    S+ Q
Sbjct: 102 VVCSCARGY---TLADNGKACIPTGPYPCGKQTLERRKRSVAQ 141

>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX Length = 149

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
           D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 3   DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 61
Query: 77  YLCECYPGYTGKTCADDIKEC-ESNPCQYGGTCLEHSNMSLYQRS 120
            +C C  GY   T AD+ K C  + P   G   LE    S+ Q +
Sbjct: 62  VVCSCARGY---TLADNGKACIPTGPYPCGKQTLERRKRSVAQAT 103

>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 20 CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN-GARCVDKVKDYL 78
          C S PCL+ G C+D +  YTC C   GY G +CE+  ++C P         C+   + Y 
Sbjct: 8  CISQPCLHNGSCQDSIWGYTCTC-SPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 79 CECYPGYTGKTCADDIKEC 97
          C C  GY      +D K+C
Sbjct: 67 CSCAQGY---RLGEDHKQC 82

>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 20  CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
           C S PC N G+C+D  N Y C+C  TGY G  CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655

>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 20  CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
           C S PC N G+C+D  N Y C+C  TGY G  CE
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655

>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed With Methyl Ester Flurbiprofen Length = 551

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 1  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39

>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 134

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
           D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 43  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 77  YLCECYPGYT----GKTC 90
            +C C  GYT    GK C
Sbjct: 102 VVCSCARGYTLADNGKAC 119

>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid Length = 551

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 1  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39

>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein Prostaglandin H2 Synthase-1 Length = 554

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 1  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 39

>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 152

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81

>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of Prostagladin H Synthase-1 That Forms Predominantly 11-hpete Length = 600

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 71

>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The Crystal Structure Of Inactivated Prostaglandin H2 Synthase Length = 576

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 9  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 47

>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex With Diclofenac Length = 553

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To Cyclooxygenase-1 Length = 600

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 71

>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The Cyclooxygenase Active Site Of Pghs-1 Length = 553

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen) Length = 576

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 9  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 47

>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1 Heterodimer Mutant In Complex With Flurbiprofen Length = 553

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen Length = 580

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 51

>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 20  CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
           C S PC N G+C+D  N Y C+C  TGY G  CE
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 430

>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23 Structures Length = 41

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 4  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37

>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation Fvii, Nmr, 20 Structures Length = 46

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 4  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 37

>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor Viia/tissue Factor/pyrazinone Inhibitor Length = 142

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81

>pdb|1W0Y|L Chain L, Tf7a_3771 Complex Length = 142

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81

>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 152

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 81

>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In Complex With Ecotin M84r Length = 138

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
           D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 48  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 106
Query: 77  YLCECYPGYTGKTCADDIKEC 97
            +C C  GY   T AD+ K C
Sbjct: 107 VVCSCARGY---TLADNGKAC 124

>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix Length = 39

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
          D CES PCLNGG CKD +N+Y C C   G+ G +CE+
Sbjct: 4  DQCESNPCLNGGSCKDDINSYECWC-PFGFEGKNCEL 39

>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide Exosite Inhibitor E-76 And Coagulation Factor Viia Length = 101

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 7  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 40

>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex Length = 95

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 1  DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 34

>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like Repeat 12 Of Mouse Notch-1 Receptor Length = 38

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          ++++C  NPC+N A C+D++ ++ C C PGY G  C
Sbjct: 1  DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYC 36

>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex Length = 96

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
          D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 5  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQAS 63
Query: 77 YLCECYPGYT----GKTC 90
           +C C  GYT    GK C
Sbjct: 64 VVCSCARGYTLADNGKAC 81

>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex Length = 94

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
          D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 3  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 61
Query: 77 YLCECYPGYT----GKTC 90
           +C C  GYT    GK C
Sbjct: 62 VVCSCARGYTLADNGKAC 79

>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532 Length = 96

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
          D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 5  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 63
Query: 77 YLCECYPGYT----GKTC 90
           +C C  GYT    GK C
Sbjct: 64 VVCSCARGYTLADNGKAC 81

>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1- (2-oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 94

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCVDKVKD 76
          D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C ++   
Sbjct: 4  DQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 62
Query: 77 YLCECYPGYT----GKTC 90
           +C C  GYT    GK C
Sbjct: 63 VVCSCARGYTLADNGKAC 80

>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N- Terminal Egf-Like Module Of Blood Coagulation Factor X As Determined By Nmr Spectroscopy And Simulated Folding Length = 42

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56
          D CE  PCLN G CKD + +YTC C + G+ G +CE + 
Sbjct: 4  DQCEGHPCLNQGHCKDGIGDYTCTCAE-GFEGKNCEFST 41

>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia In Complex With Soluble Tissue Factor Length = 94

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 2  CASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 33

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-36
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-36
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-19
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	5e-34
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	8e-20
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-15
2vh0_B	134	Activated factor XA light chain; serine protease,	9e-33
2vh0_B	134	Activated factor XA light chain; serine protease,	1e-24
2vh0_B	134	Activated factor XA light chain; serine protease,	8e-16
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-30
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	7e-22
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-13
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-29
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-26
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-19
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	8e-16
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-28
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	5e-28
1aut_L	114	Activated protein C; serine proteinase, plasma cal	9e-25
1aut_L	114	Activated protein C; serine proteinase, plasma cal	3e-11
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-16
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-16
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-14
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	4e-14
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-12
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-05
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-16
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-14
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	6e-13
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-11
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-05
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-14
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-09
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	3e-09
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-08
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	7e-08
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	4e-13
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	7e-12
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-11
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-09
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-04
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	3e-11
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	4e-11
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	8e-11
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	5e-09
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	5e-07
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	2e-10
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	2e-08
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	3e-04
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	8e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	4e-09
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	4e-08
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-07
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-08
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-05
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	3e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	6e-04
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-07
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-06
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-05
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-06
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-04
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	2e-06
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	2e-06
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	4e-05
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	1e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-04
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	1e-04
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	1e-04
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	8e-04
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	2e-04
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-04
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	4e-04
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	4e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	5e-04
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	5e-04
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	5e-04
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	8e-04
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	9e-04

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  120 bits (304), Expect = 2e-36
 Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 3/100 (3%)

Query: 16  NIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
           ++D+C   + PC + G C + L ++ C C Q GYTGP CEI++++C  NPC+N A C+D+
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQ 62

Query: 74  VKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           + ++ C C PGY G  C  +  EC S+PC + G CL+  N
Sbjct: 63  IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 102

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score =  120 bits (303), Expect = 3e-36
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           CE ++++C S PC N   C D +  + C C   GY G HCE+N D+CA +PC +  RC+D
Sbjct: 41  CEIDVNECVSNPCQNDATCLDQIGEFQCICM-PGYEGVHCEVNTDECASSPCLHNGRCLD 99

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPC 102
           K+ ++ CEC  G+TG  C  D+        
Sbjct: 100 KINEFQCECPTGFTGHLCQVDLHHILDAQK 129

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 76.1 bits (188), Expect = 7e-19
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG 67
             CE N D+C S PCL+ G C D +N + C C  TG+TG  C++++           
Sbjct: 77  VHCEVNTDECASSPCLHNGRCLDKINEFQCEC-PTGFTGHLCQVDLHHILDAQKMVW 132

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score =  115 bits (289), Expect = 5e-34
 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
              + D CE  PCLNGGLCKD +N+Y C CQ  G+ G +CE++      N          
Sbjct: 44  QYVDGDQCEPNPCLNGGLCKDDINSYECWCQ-VGFEGKNCELDATCNIKNGRCKQFCKTG 102

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMS 115
                LC C  GY         K     PC         + ++
Sbjct: 103 ADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPTTLT 145

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 78.9 bits (195), Expect = 8e-20
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 31  CKDLLNNYTCNCQ-----QTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGY 85
           C +   ++    +     +         ++ D C PNPC NG  C D +  Y C C  G+
Sbjct: 18  CIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGF 77

Query: 86  TGKTCADDIKECESNPCQYGGTCLEHSN 113
            GK C  D      N            +
Sbjct: 78  EGKNCELDATCNIKNGRCKQFCKTGADS 105

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 67.8 bits (166), Expect = 1e-15
 Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 1/65 (1%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
           + CE +                   +   C+C  TGY     + +     P PC   +  
Sbjct: 80  KNCELDATCNIKNGRCKQFCKTGADSKVLCSC-TTGYRLAPDQKSCKPAVPFPCGRVSVS 138

Query: 71  VDKVK 75
                
Sbjct: 139 HSPTT 143

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score =  111 bits (280), Expect = 9e-33
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCV 71
              + D CE+ PC N G CKD L  YTC C + G+ G +CE+     C+ +       C 
Sbjct: 38  KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQFCH 96

Query: 72  DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
           ++    +C C  GYT              PC      
Sbjct: 97  EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 90.8 bits (226), Expect = 1e-24
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 22  SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
              C+      +       +  +      +   + D C  +PC+N  +C D + +Y C C
Sbjct: 9   ERECMEETCSYEEAREVFEDSDK-TNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTC 67

Query: 82  YPGYTGKTCADDIKE-CESNPCQYGGTCLEHSN 113
             G+ GK C    ++ C  +       C E  N
Sbjct: 68  LEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 68.1 bits (167), Expect = 8e-16
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 11  RLCETNIDD-CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR 69
           + CE      C          C +  N+  C+C + GYT            P PC     
Sbjct: 74  KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCAR-GYTLADNGKACIPTGPYPCGKQTL 132

Query: 70  C 70
            
Sbjct: 133 E 133

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score =  105 bits (264), Expect = 3e-30
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG---AR 69
             ++ D C S PC NGG CKD L +Y C C    + G +CE + DD      +NG     
Sbjct: 43  SYSDGDQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCETHKDDQLICVNENGGCEQY 101

Query: 70  CVDKV-KDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
           C D       C C+ GY+              PC      
Sbjct: 102 CSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 83.9 bits (208), Expect = 7e-22
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 22  SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
              C     C            +          + D CA +PC+NG  C D+++ Y+C C
Sbjct: 14  ERECKEE-QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72

Query: 82  YPGYTGKTCADDIKECESNPCQYGGTC 108
            P + G+ C     +      + GG  
Sbjct: 73  LPAFEGRNCETHKDDQLICVNENGGCE 99

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 11  RLCETNIDDCESGPCLNGG---LCKDLLNN-YTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
           R CET+ DD       NGG    C D      +C C   GY+     ++       PC  
Sbjct: 79  RNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC-HEGYSLLADGVSCTPTVEYPCGK 137

Query: 67  GARC 70
               
Sbjct: 138 IPIL 141

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score =  104 bits (262), Expect = 2e-29
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-CAPNPCKNGARCV 71
              + D CE+ PC N G CKD L  YTC C   G+ G +CE+     C+ +       C 
Sbjct: 38  KYKDGDQCETSPCQNQGKCKDGLGEYTCTCL-EGFEGKNCELFTRKLCSLDNGDCDQFCH 96

Query: 72  DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           ++    +C C  GYT              PC          +
Sbjct: 97  EEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRS 138

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 97.1 bits (242), Expect = 2e-26
 Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 3/105 (2%)

Query: 11  RLCETNIDD-CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR 69
           + CE      C          C +  N+  C+C + GYT            P PC     
Sbjct: 74  KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCAR-GYTLADNGKACIPTGPYPCGKQTL 132

Query: 70  CVDKVKDYLCECYPGYT-GKTCADDIKECESNPCQYGGTCLEHSN 113
              K          G              + +P +     L+ + 
Sbjct: 133 ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQ 177

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 14  ETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
           E      E   C+      +       +  +      +   + D C  +PC+N  +C D 
Sbjct: 2   EMKKGHLER-ECMEETCSYEEAREVFEDSDK-TNEFWNKYKDGDQCETSPCQNQGKCKDG 59

Query: 74  VKDYLCECYPGYTGKTCADDIKE-CESNPCQYGGTCLEHSN 113
           + +Y C C  G+ GK C    ++ C  +       C E  N
Sbjct: 60  LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQN 100

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 69.4 bits (170), Expect = 8e-16
 Identities = 9/77 (11%), Positives = 15/77 (19%)

Query: 10  LRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR 69
           L             PC    L +   +                    D    +P +N   
Sbjct: 112 LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFD 171

Query: 70  CVDKVKDYLCECYPGYT 86
            +D  +          T
Sbjct: 172 LLDFNQTQPERGDNNLT 188

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score =  100 bits (250), Expect = 4e-28
 Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 22/117 (18%)

Query: 18  DDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEINID------------DCAPNP 63
           D C+  PC NGG+C   L   +++C C   G+T P+C   ++             C PNP
Sbjct: 1   DICDPNPCENGGICLPGLADGSFSCECPD-GFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59

Query: 64  CKNGARCV-------DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           C NG  C        D    Y+C+C  G+ G  C  +I ECE  PC+ GG C +   
Sbjct: 60  CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVA 116

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 99.8 bits (249), Expect = 5e-28
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 13  CETNIDDCESGPCLNGGLCK-------DLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCK 65
             T+   C   PC NGG C+       D    Y C C   G+ G HC+ NI++C   PCK
Sbjct: 48  EPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP-RGFNGIHCQHNINECEVEPCK 106

Query: 66  NGARCVDKVKDYLCECYPGYTGKTCADDIKECESN 100
           NG  C D V +Y CEC   + G+ C         +
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHH 141

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 90.5 bits (225), Expect = 9e-25
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 13  CETN-IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE--INIDDCAPNPCKNGAR 69
           C    ++   +  C   G C D + +++C+C+ +G+ G  C+  ++  +C+ +       
Sbjct: 9   CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCR-SGWEGRFCQREVSFLNCSLDNGGCTHY 67

Query: 70  CVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSL 116
           C+++V    C C PGY               PC      +E     L
Sbjct: 68  CLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHL 114

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 11  RLCETNID--DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGA 68
           R C+  +   +C          C + +    C+C   GY      +        PC    
Sbjct: 46  RFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAP-GYKLGDDLLQCHPAVKFPCGRPW 104

Query: 69  RCVDKVKDYL 78
           + ++K + +L
Sbjct: 105 KRMEKKRSHL 114

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 54  INIDDCAPNP--------CKNGARCVDKVKDYLCECYPGYTGKTCADDI--KECESNPCQ 103
           ++ D C   P        C     C+D +  + C+C  G+ G+ C  ++    C  +   
Sbjct: 4   VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGG 63

Query: 104 YGGTCLEHSN 113
               CLE   
Sbjct: 64  CTHYCLEEVG 73

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 15  TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGAR-CVDK 73
                C S PCL+ G C+D +  YTC C   GY G +CE+  ++C P         C+  
Sbjct: 3   KGGSPCISQPCLHNGSCQDSIWGYTCTC-SPGYEGSNCELAKNECHPERTDGCQHFCLPG 61

Query: 74  VKDYLCECYPGYTGKTCADDIKECESNPC 102
            + Y C C  GY            +   C
Sbjct: 62  QESYTCSCAQGYRLGEDHKQCVPHDQCAC 90

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 16  NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK 75
            I  C   PC NGG C   +    C C   GY G  C   + +     C     C +   
Sbjct: 243 EISKC-PQPCRNGGKC---IGKSKCKCS-KGYQGDLCSKPVCEP---GCGAHGTCHE--- 291

Query: 76  DYLCECYPGYTGKTCADDIKECESNPCQYGG 106
              C+C  G+ G+ C    +        +  
Sbjct: 292 PNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 67.2 bits (164), Expect = 3e-14
 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
               S  C NGG C        C C   G  G  CEI      P PC+NG +C+      
Sbjct: 212 KANCSTTCFNGGTC---FYPGKCICPP-GLEGEQCEI---SKCPQPCRNGGKCIG---KS 261

Query: 78  LCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
            C+C  GY G  C+  + E     C   GTC E
Sbjct: 262 KCKCSKGYQGDLCSKPVCEP---GCGAHGTCHE 291

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 66.4 bits (162), Expect = 4e-14
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 19  DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYL 78
              +  C+NGGLC   +    C C   G+ G +C+          C NG  C        
Sbjct: 181 ALCTPRCMNGGLC---VTPGFCICP-PGFYGVNCDK---ANCSTTCFNGGTCFY---PGK 230

Query: 79  CECYPGYTGKTCADDIKECESNPCQYGGTCL 109
           C C PG  G+ C  +I +C   PC+ GG C+
Sbjct: 231 CICPPGLEGEQC--EISKC-PQPCRNGGKCI 258

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 31/89 (34%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 22  SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC 81
            G C NGG C +      C C   G+ GPHCE          C NG  CV       C C
Sbjct: 152 PGGCRNGGFCNE---RRICECP-DGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCIC 201

Query: 82  YPGYTGKTCADDIKECESNPCQYGGTCLE 110
            PG+ G  C        S  C  GGTC  
Sbjct: 202 PPGFYGVNCDKA---NCSTTCFNGGTCFY 227

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNG 67
            LC   + +     C   G C +      C C Q G+ G HC    +        + 
Sbjct: 272 DLCSKPVCEP---GCGAHGTCHE---PNKCQC-QEGWHGRHCNKRYEASLIGTKHHH 321

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 40  CNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECES 99
            +       G  C    D  A     +      +    L         KTC     EC  
Sbjct: 97  PHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNTILKTPQNAIFFKTC--QQAEC-P 152

Query: 100 NPCQYGGTCLEH 111
             C+ GG C E 
Sbjct: 153 GGCRNGGFCNER 164

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 69.7 bits (171), Expect = 4e-16
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 16  NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK 75
           N   C  G     G CK       C CQ  G+ G +C    D C P+P      C +   
Sbjct: 64  NRAICRQGCSPKHGSCKL---PGDCRCQ-YGWQGLYC----DKCIPHPGCVHGICNE--- 112

Query: 76  DYLCECYPGYTGKTCADDIKECESN-PCQYGGTCLEH 111
            + C C   + G+ C  D+  C ++ PC  GGTC   
Sbjct: 113 PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNT 149

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCA-PNPCKNGARCVDKVKD 76
           D C   P    G+C +    + C C+ T + G  C+ +++ C    PC NG  C +   D
Sbjct: 97  DKCIPHPGCVHGICNE---PWQCLCE-TNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152

Query: 77  -YLCECYPGYTGKTC 90
            Y C C  GY+G  C
Sbjct: 153 KYQCSCPEGYSGPNC 167

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 61.2 bits (149), Expect = 6e-13
 Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 12/91 (13%)

Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDY 77
             C       G    D   N    C   G+ GP C   I  C          C       
Sbjct: 32  KFCRPRDDFFGHYACD--QNGNKTCM-EGWMGPECNRAI--CRQGCSPKHGSCKL---PG 83

Query: 78  LCECYPGYTGKTCADDIKECESNPCQYGGTC 108
            C C  G+ G  C     +C  +P    G C
Sbjct: 84  DCRCQYGWQGLYCD----KCIPHPGCVHGIC 110

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 20  CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLC 79
             S    + G  +         C    Y G  C      C P     G    D  ++   
Sbjct: 2   RGSHHHHHHGSIE---GRSAVTCD-DYYYGFGCN---KFCRPRDDFFGHYACD--QNGNK 52

Query: 80  ECYPGYTGKTCADDIKECESNPCQYGGTC 108
            C  G+ G  C   I  C        G+C
Sbjct: 53  TCMEGWMGPECNRAI--CRQGCSPKHGSC 79

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%)

Query: 11  RLCETNIDDCES-GPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
           +LC+ +++ C +  PCLNGG C +   + Y C+C + GY+GP+CEI
Sbjct: 125 QLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPE-GYSGPNCEI 169

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 6/55 (10%)

Query: 59  CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
              +   +              C   Y G  C    K C      +G    + + 
Sbjct: 2   RGSHHHHHHGSIEG---RSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACDQNG 50

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 12  LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
           + +  +    + P  +G +          + +     G       ++     C NG  C 
Sbjct: 154 IRDVRVQSSLALPVDSGEVK--------LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCS 205

Query: 72  DKVKDYLCEC-YPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSD 121
                 +C+C   G+ GK C+   +E  +        C + S   +   SD
Sbjct: 206 VVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSD 256

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 13   CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPC 64
            CE     C+   C N G+C    + ++C+C  T ++GP C         +  
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 46   GYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC-YPGYTGKTCADDIKECESNPCQY 104
            G     CE     C  + C N   C+ +   + C+C    ++G  C D       +    
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066

Query: 105  GGTCLEHSNMSLYQRSD 121
              T     N     R+D
Sbjct: 1067 QITYKWPPNDRPSTRAD 1083

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

Query: 35  LNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYP-GYTGKTCADD 93
           +          G            C  NPCKN   C D    Y+C+C   GY G++C  +
Sbjct: 598 IRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 657

Query: 94  IKECESNPCQYGGTCLEHSNMS 115
                 +   +    L     +
Sbjct: 658 ATVLSYDGSMFMKIQLPVVMHT 679

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 49.1 bits (116), Expect = 7e-08
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPC 64
                  C S PC N G+C+D  N Y C+C  TGY G  CE      + +  
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGS 666

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 58.3 bits (142), Expect = 4e-13
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
          + D CES PCLNGG CKD +N+Y C C   G+ G +CE+
Sbjct: 2  DGDQCESNPCLNGGSCKDDINSYECWCPF-GFEGKNCEL 39

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 55.2 bits (134), Expect = 7e-12
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          ++ D C  NPC NG  C D +  Y C C  G+ GK C
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 15  TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKV 74
           T++++C        G C +   +Y C+C    +      +   D     C    R     
Sbjct: 1   TDVNECLDPTTCISGNCVNTPGSYICDCPP-DFELNPTRVGCVDTRSGNCYLDIRPRGDN 59

Query: 75  KDYLCECYPGY--TGKTCADDIKECESNPCQYGGTC 108
            D  C    G   +  +C   + +    PC+     
Sbjct: 60  GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV 95

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 6/95 (6%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQ-TGYTGPHCEINIDDCAPNPCKNGARCV 71
                 D  SG C      +    +  C+ +   G +   C  ++      PC+      
Sbjct: 37  TRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVN 96

Query: 72  DKVKDYLCECYPGYT----GKTCADDIKECESNPC 102
                 LC    G+          +DI EC+  P 
Sbjct: 97  TSEYKILCPGGEGFRPNPITVIL-EDIDECQELPG 130

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN---IDDCAPNPCK-NGA 68
           C  ++      PC              C   + G+      +    ID+C   P    G 
Sbjct: 77  CCCSLGKAWGTPCEMCPAVNTSEYKILCPGGE-GFRPNPITVILEDIDECQELPGLCQGG 135

Query: 69  RCVDKVKDYLCECYPGYTGKTCADDIKECE 98
           +C++    + C C  GY      +D + C+
Sbjct: 136 KCINTFGSFQCRCPTGYYL---NEDTRVCD 162

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 43  QQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCEC-YPGYTGKTCADDIKECESNP 101
              G     CE     C  + C N   C+ +   + C+C    ++G  C D       + 
Sbjct: 172 FCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSK 231

Query: 102 CQYGGTCLEHSNMSLYQRSD 121
                T     N     R+D
Sbjct: 232 GGGQITYKWPPNDRPSTRAD 251

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 58.5 bits (141), Expect = 4e-11
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
           CE     C+   C N G+C    + ++C+C  T ++GP C         +    
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 54.0 bits (130), Expect = 8e-11
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 38 YTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVK--DYLCECYPGYTGKTCADDIK 95
            C C  +G    H  + +  C+   C NG  C   +   D++C+C  G+ GK+C  D +
Sbjct: 32 EYCWCN-SGRAQCHS-VPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 89

Query: 96 E 96
           
Sbjct: 90 A 90

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 49.4 bits (118), Expect = 5e-09
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 13 CETNIDDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEINI 56
              +  C    C NGG C+  L  +++ C C   G+ G  CEI+ 
Sbjct: 44 HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQC-PEGFAGKSCEIDT 88

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 44.0 bits (104), Expect = 5e-07
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 10/82 (12%)

Query: 37  NYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKE 96
           +Y   C+    T    + +       P     R         C C  G      +  +K 
Sbjct: 1   SYQVICRD-EKTQMIYQQH--QSWLRPVLRSNRV------EYCWCNSGRAQ-CHSVPVKS 50

Query: 97  CESNPCQYGGTCLEHSNMSLYQ 118
           C    C  GGTC +    S + 
Sbjct: 51  CSEPRCFNGGTCQQALYFSDFV 72

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 13  CETNIDDCESGPCLN-GGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCV 71
             ++I       C     +C    +  TC C+    TGP C     +    P   G+  +
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECE-HNTTGPDCGKCKKNYQGRPWSPGS-YL 344

Query: 72  DKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
              K     C P  +           E   CQ GGTC
Sbjct: 345 PIPKGAANACIPSISSIGTNVCD--NELLHCQNGGTC 379

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
           C     + +  P   G     +       C     +     +  ++     C+NG  C +
Sbjct: 326 CGKCKKNYQGRPWSPGS-YLPIPKGAANACIP-SISSIGTNVCDNEL--LHCQNGGTCHN 381

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
            V+   C C   YTG  C    ++     C+  G+C   S 
Sbjct: 382 NVR---CLCPAAYTGILC----EKLR---CEEAGSCGSDSG 412

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 13/78 (16%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
             TN+ D E   C NGG C    NN  C C    YTG  CE          C+    C  
Sbjct: 361 IGTNVCDNELLHCQNGGTC---HNNVRCLCPA-AYTGILCE-------KLRCEEAGSCGS 409

Query: 73  KVKDYLCECYPGYTGKTC 90
                      G      
Sbjct: 410 DSGQ--GAPPHGTHHHHH 425

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 55  NIDDCAPNPCKNGA-RCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           +I       C   A  CV       CEC    TG  C    K  +  P    G+ L    
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYLPIPK 348

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 23/106 (21%), Positives = 32/106 (30%), Gaps = 19/106 (17%)

Query: 19  DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCA-----PNPCKNGARCVDK 73
           +     C+N G+C +  +   C C   G+ G  CE   +           C     C   
Sbjct: 199 NHLCTACMNNGVCHE--DTGECICP-PGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255

Query: 74  VK----DYLCECYPGYTGKTCADDIKECESNP-------CQYGGTC 108
           V      Y C C  G+ G  C +        P       C  G  C
Sbjct: 256 VFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC 301

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 6/105 (5%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI-NIDDCAPNPCKNGARCV 71
                D      C NG +C        C C   G+ G  CE   I    P          
Sbjct: 283 GFYGPDCKLRCSCNNGEMCD---RFQGCLCSP-GWQGLQCEREGIPRMTPKIVDLPDHIE 338

Query: 72  DKVKDYLCECY-PGYTGKTCADDIKECESNPCQYGGTCLEHSNMS 115
                +   C   G+   T  +           +        + S
Sbjct: 339 VNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFS 383

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 19/100 (19%), Positives = 25/100 (25%), Gaps = 13/100 (13%)

Query: 18  DDCESGPCLNGG-LCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKD 76
           D         GG L             +    GP C           C N   C +    
Sbjct: 163 DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECN-----HLCTACMNNGVCHE--DT 215

Query: 77  YLCECYPGYTGKTCADDIKECE-----SNPCQYGGTCLEH 111
             C C PG+ G+TC    +           C     C  +
Sbjct: 216 GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSY 255

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 8/87 (9%), Positives = 21/87 (24%), Gaps = 1/87 (1%)

Query: 14  ETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDK 73
              I              +     +   C+ +G+  P  E  +    P+      +  + 
Sbjct: 320 REGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNE-EMTLVKPDGTVLHPKDFNH 378

Query: 74  VKDYLCECYPGYTGKTCADDIKECESN 100
              +    +  +        +  C  N
Sbjct: 379 TDHFSVAIFTIHRILPPDSGVWVCSVN 405

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 17  IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKD 76
           ID+CES PC+NG +CK+   ++ C C     T    +    +     C            
Sbjct: 4   IDECESSPCING-VCKNSPGSFICECSS-ESTLDPTKTICIETIKGTCWQTVID----GR 57

Query: 77  YLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
                        C   +     +PC      
Sbjct: 58  CEININGATLKSQCCSSLGAAWGSPCTLCQVD 89

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 17/93 (18%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT-GPHCEINIDDCAPNPCKNGARCV 71
            +T   +   G C    +         C     G T    C  ++     +PC       
Sbjct: 37  TKTICIETIKGTCWQTVID------GRCEININGATLKSQCCSSLGAAWGSPCTLCQ--- 87

Query: 72  DKVKDYLCECYPGYTGKTCA--DDIKECESNPC 102
                    C  GY+       +DI ECE  P 
Sbjct: 88  -----VDPICGKGYSRIKGTQCEDIDECEVFPG 115

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 56  IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
           ID+C  +PC NG  C +    ++CEC    T         E     C           
Sbjct: 4   IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQ--TGYTGPHCEINIDDCAPNPCK-NGAR 69
           C +++      PC                C +  +   G  CE +ID+C   P       
Sbjct: 71  CCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCE-DIDECEVFPGVCKNGL 121

Query: 70  CVDKVKDYLCECYPGYTG 87
           CV+    + C+C  G T 
Sbjct: 122 CVNTRGSFKCQCPSGMTL 139

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 11  RLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC 70
                   +     C   G C+       C C  +GY  P C+       P+PC     C
Sbjct: 554 ERTTEGCLNPRRVECSGRGRCRC----NVCEC-HSGYQLPLCQEC--PGCPSPCGKYISC 606

Query: 71  VDKVKDYLCECYPGYTGKTCADD-IKECESNPCQYGGTCLE 110
            +       +   G  GK C+        SN    G TC E
Sbjct: 607 AE-----CLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE 642

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 13  CETNIDDCE-SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID-----DCAPNPCKN 66
           CE +  +CE     + GG  + L     C C   G+ G  C+         +     C  
Sbjct: 512 CECDTINCERYNGQVCGGPGRGLCFCGKCRCH-PGFEGSACQCERTTEGCLNPRRVECSG 570

Query: 67  GARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLE 110
             RC       +CEC+ GY    C         +PC    +C E
Sbjct: 571 RGRCRC----NVCECHSGYQLPLC--QECPGCPSPCGKYISCAE 608

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 12/96 (12%)

Query: 19  DCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN-IDDCAPNPCKNGARCVDKVKDY 77
                PC     C           +  G  G +C          N    G  C ++    
Sbjct: 594 PGCPSPCGKYISC-----AECLKFE-KGPFGKNCSAACPGLQLSNNPVKGRTCKERDS-- 645

Query: 78  LCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN 113
              C+  YT +    D  +           C+   +
Sbjct: 646 -EGCWVAYTLEQQ--DGMDRYLIYVDESRECVAGPD 678

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 42.6 bits (101), Expect = 1e-06
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT--GPHCEINIDDCAPNPCKNGARCVD 72
           ++D+C+       G C +   +Y C C   GY   G  C  + D+C+         C +
Sbjct: 3  VDMDECKEPDVCKHGQCINTDGSYRCECP-FGYILAGNECV-DTDECSVGNPCGNGTCKN 60

Query: 73 KVKDYLCECYPGYTGKTCADDIKECE 98
           +  + C C  G+        +  CE
Sbjct: 61 VIGGFECTCEEGFEP----GPMMTCE 82

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 54  INIDDCAPNPCKNGARCVDKVKDYLCECYPGYT--GKTCADDIKECESNPCQYGGTC 108
           +++D+C         +C++    Y CEC  GY   G  C  D  EC        GTC
Sbjct: 3   VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGNGTC 58

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          + C S PC N G C     + Y C+C +TG+ G +C  
Sbjct: 2  NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Length = 162

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 52  CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECE 98
           C      C    C     C++ + +Y C CYPG+ G  C     + +
Sbjct: 117 CYT--ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Length = 162

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 12  LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDC 59
           LC T    C+   C   G C + + NYTC+C   G+ GP CE   DD 
Sbjct: 116 LCYT--ASCQDMSCSKQGECLETIGNYTCSCYP-GFYGPECEYVRDDD 160

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 17  IDDCESGPCLNGGLCKDLLN-NYTCNCQQTGYT--GPHCEINIDDCAPN-----PCKNGA 68
            D C S PC  G  C    + +++C     G+   G HCE ++D+CA             
Sbjct: 3   PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVP 61

Query: 69  RCVDKVKDYLCE-CYPGYTG---KTCADDIKECESNPCQYGGTCLEHSN 113
           RCV+    + C  C P Y G        +  + E   C+    C + ++
Sbjct: 62  RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTH 110

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 2/105 (1%)

Query: 18  DDCESGPCLNGGLCKDLLNNYTCNCQQT--GYTGPHCEINIDDCAPNPCKNGARCVDKVK 75
                  C N    ++ +  Y              +CE  +++   +     +    +  
Sbjct: 57  VQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGA 116

Query: 76  DYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRS 120
               E    +   T      +C   P     +  + +   L +  
Sbjct: 117 TATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESY 161

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Length = 157

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 52  CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
           C      C    C     CV+ + +Y C+C PG++G  C
Sbjct: 117 CYT--AACTNTSCSGHGECVETINNYTCKCDPGFSGLKC 153

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Length = 157

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 12  LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
           LC T    C +  C   G C + +NNYTC C   G++G  CE
Sbjct: 116 LCYT--AACTNTSCSGHGECVETINNYTCKCDP-GFSGLKCE 154

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 18/96 (18%), Positives = 21/96 (21%), Gaps = 16/96 (16%)

Query: 13  CETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVD 72
                       C   G C       +C C Q G  G  CE       P+ C     C  
Sbjct: 563 RTDTCMSSNGLLCSGRGKC----ECGSCVCIQPGSYGDTCEKC--PTCPDACTFKKEC-- 614

Query: 73  KVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC 108
                  EC     G     D   C         + 
Sbjct: 615 ------VECKKFDRGALH--DENTCNRYCRDEIESV 642

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)

Query: 56  IDDCA--PNPCKNGARCVDKVKDYLCECYPGYT----GKTCADDIKECESNPCQ 103
           +D+C+  P+ C     C +   D+ CEC  GY      K+C +DI EC  N C 
Sbjct: 3   VDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCA 54

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 26  LNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGY 85
           +        +++Y                  ++C  N       C D    Y C C  G+
Sbjct: 1   MKHHHHHHPMSDYDIPTT-ENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGF 58

Query: 86  T---GKTCADDIKECESN 100
                + C +DI EC+  
Sbjct: 59  QLVAQRRC-EDIDECQDP 75

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 7/124 (5%)

Query: 9   GLRLCETNIDD--CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
            L+  E+ +     +    L+G   +   ++    C  + Y          D        
Sbjct: 256 LLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHE 315

Query: 67  G--ARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPA 124
                C + V+   C+ +     +   ++ K          G+  +  +           
Sbjct: 316 ACQKLCTNAVR---CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLR 372

Query: 125 LPKI 128
           L K+
Sbjct: 373 LCKM 376

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 36.1 bits (84), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 15 TNIDDCESGPCLNG-GLCKDLLNNYTCNC----QQTGYTGPHCEINIDDCAPNPCK-NGA 68
          T+ID+C   P L G G C +   ++ C C    +       +C  +ID+C  +P    G 
Sbjct: 1  TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGG 59

Query: 69 RCVDKVKDYLCECYPGYT----GKTC 90
           C +    Y CEC PG+        C
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPNISAC 85

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 17  IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKD 76
           +D C    C           +Y C C + G+     E +      N     A C      
Sbjct: 4   VDPCFRANC-EYQCQPLDQTSYLCVCAE-GFAPIPHEPHRCQMFCNQTACPADCDPNT-Q 60

Query: 77  YLCECYPGYT---GKTCADDIKECESNPC 102
             CEC  GY    G  C  DI ECE+   
Sbjct: 61  ASCECPEGYILDDGFIC-TDIDECENGGF 88

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} Length = 164

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 52  CEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
           C      C P  C     CV+ + +Y C C  GY G  C
Sbjct: 117 CYT--ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 19 DCESGPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCE 53
              G CLNGG+C  +  L++YTCNC   GY+G  C+
Sbjct: 8  SSYDGYCLNGGVCMHIESLDSYTCNC-VIGYSGDRCQ 43

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Length = 267

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 22/100 (22%)

Query: 20  CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLC 79
             + P  +GG+                  G   + N+ +       +G + +     Y  
Sbjct: 146 GSAAPWHSGGVW---------------VLGTRGKQNVINVDAK-SNDGGKTLSGTMTYNG 189

Query: 80  ECYPGYTGKTCADDIKE------CESNPCQYGGTCLEHSN 113
           E   G+ G   + D           + P   GG  +  + 
Sbjct: 190 EGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMIGAR 229

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Length = 463

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 20  CESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLC 79
           C +G C   G C          C   G+ G  C      C P  C++G  CV   K   C
Sbjct: 399 CRNGYCTPTGKC----------CCSPGWEGDFCRTAK--CEP-ACRHGGVCVRPNK---C 442

Query: 80  ECYPGYTGKTC 90
            C  GY G  C
Sbjct: 443 LCKKGYLGPQC 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.82
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.75
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.75
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.65
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.62
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.58
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.46
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.42
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.42
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.4
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.39
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.32
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.32
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.31
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.31
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.29
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.27
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.23
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.22
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.19
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.17
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.14
2vh0_B	134	Activated factor XA light chain; serine protease,	99.13
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.12
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.08
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.07
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.98
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.95
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.91
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.9
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.88
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.87
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.86
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.86
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.86
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.82
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.82
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.81
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.8
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.78
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.75
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.73
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.73
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.66
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.65
2vh0_B	134	Activated factor XA light chain; serine protease,	98.64
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.61
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.55
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.49
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.44
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.28
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.27
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.26
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.24
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.22
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.18
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.15
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.15
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.13
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.1
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.98
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.98
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.97
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.88
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.79
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.48
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.47
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.43
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.24
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.23
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.95
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.94
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.88
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.81
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.8
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.78
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.77
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.73
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.66
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.56
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.48
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.43
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	96.36
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.32
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.31
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.26
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.24
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.07
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.0
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.89
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	95.8
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	95.77
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	95.73
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	95.71
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	95.69
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.46
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	95.43
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	95.43
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.41
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	95.38
1ob1_C	99	Major merozoite surface protein; immune system, im	95.35
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	95.24
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	94.96
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	94.86
1szb_A	170	Mannose binding lectin-associated serine protease-	94.84
1ob1_C	99	Major merozoite surface protein; immune system, im	94.71
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	94.6
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	94.54
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	94.28
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	94.24
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	93.14
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	93.13
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	93.01
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	92.91
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	92.63
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	92.16
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	92.16
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	92.01
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	91.46
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	91.3
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	91.27
1szb_A	170	Mannose binding lectin-associated serine protease-	90.82
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	90.05
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	89.99
2wph_E	59	Coagulation factor IXA light chain; serine proteas	85.73
1nzi_A	159	Complement C1S component; calcium, innate immunity	85.68
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	81.63

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.82  E-value=1.7e-19  Score=110.27  Aligned_cols=107  Identities=39%  Similarity=1.021  Sum_probs=97.3

Q ss_pred             ccCCCC--CCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCC
Q psy9687          16 NIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD   93 (141)
Q Consensus        16 ~~~~c~--~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~   93 (141)
                      ++++|.  ..||.+++.|.+..++|.|.|.+ ||.|..|+.++++|...+|..++.|++..+.|.|.|++||.|..|+.+
T Consensus         4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~-Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~~~   82 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN   82 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCT-TEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred             ccccccCCCCCCCCCCEeECCCCCEEEECCC-CCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcceec
Confidence            789998  67899999999999999999995 999999976788999889999999999999999999999999999778


Q ss_pred             CCCCcCCCCCCCCEEeecCCCcceecCCCC
Q psy9687          94 IKECESNPCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        94 ~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                      +++|...+|.++++|++..+.+.|.|...+
T Consensus        83 ~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~  112 (135)
T 2vj3_A           83 TDECASSPCLHNGRCLDKINEFQCECPTGF  112 (135)
T ss_dssp             CCTTTTCCSTTTCEEEECSSCEEEECCTTE
T ss_pred             CCcccCCCcCCCCEeECCCCCeEEECCCCC
Confidence            999999999999999999999999886443

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.75  E-value=4.9e-18  Score=104.75  Aligned_cols=106  Identities=37%  Similarity=0.951  Sum_probs=87.7

Q ss_pred             CCCCCCCCCCCCEEeecC--CceeEecCCCCccCCCCCc------------CCCcCcCCCCCCCCEEe-------eCCCC
Q psy9687          18 DDCESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEI------------NIDDCAPNPCKNGARCV-------DKVKD   76 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~--g~~~c~c~~~g~~g~~c~~------------~~~~c~~~~c~~~~~c~-------~~~~~   76 (141)
                      |+|...||.++++|++..  ++|+|.|.+ ||+|..|+.            +++.|...+|.+++.|+       ++.+.
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~-G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~   79 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPD-GFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIG   79 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCT-TCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECC
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCC-CCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCC
Confidence            468888999999999865  679999995 999998864            34567778899999998       56678


Q ss_pred             eeecCCCCCCCCCCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCCC
Q psy9687          77 YLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        77 ~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      |.|.|++||.|..|+.++++|...+|.++++|++..++|.|.|...+.
T Consensus        80 ~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~  127 (143)
T 4d90_A           80 YVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFM  127 (143)
T ss_dssp             EEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCB
T ss_pred             eEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCc
Confidence            999999999999997799999999999999999999999998875544

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.75  E-value=5.5e-18  Score=103.58  Aligned_cols=97  Identities=36%  Similarity=0.909  Sum_probs=85.1

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECY   82 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~   82 (141)
                      .|.++|+|..|+.++++|...+|.+++.|.+..++|.|.|.+ ||.|..|+.++++|...+|..++.|++..+.|.|.|+
T Consensus        31 ~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~-G~~G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~  109 (135)
T 2vj3_A           31 QCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMP-GYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECP  109 (135)
T ss_dssp             ECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCT-TEESSSSCEECCTTTTCCSTTTCEEEECSSCEEEECC
T ss_pred             ECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCC-CCcCCcceecCCcccCCCcCCCCEeECCCCCeEEECC
Confidence            478999999998889999999999999999999999999994 9999999767889988899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCcCC
Q psy9687          83 PGYTGKTCADDIKECESN  100 (141)
Q Consensus        83 ~g~~~~~c~~~~~~c~~~  100 (141)
                      +||.|..|+.++++|...
T Consensus       110 ~G~~G~~C~~~i~~C~~~  127 (135)
T 2vj3_A          110 TGFTGHLCQVDLHHILDA  127 (135)
T ss_dssp             TTEESSSSCEECC-----
T ss_pred             CCCcCCccCccCccccCC
Confidence            999999998789998764

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.65  E-value=2.5e-17  Score=105.79  Aligned_cols=119  Identities=21%  Similarity=0.444  Sum_probs=98.4

Q ss_pred             eeccCCccc---ccccccCCCC----CCCCCCCCEEeecC-----CceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEE
Q psy9687           3 VLWSQNGLR---LCETNIDDCE----SGPCLNGGLCKDLL-----NNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC   70 (141)
Q Consensus         3 ~~~~~~~g~---~C~~~~~~c~----~~~c~~~~~C~~~~-----g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c   70 (141)
                      .|.++|.|.   .|+ ++++|.    ..+|.+++.|.+..     ++|.|.|.+ ||.|..+.-.+++|...+|.+++.|
T Consensus        28 ~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~-G~~g~~~~C~~d~C~~~~C~~~g~C  105 (186)
T 1z1y_A           28 MCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIE-GYTLXEDTCVLDVCQYXNCGESGEC  105 (186)
T ss_dssp             EECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECT-TEEEETTEEEEGGGTTCCCCTTEEE
T ss_pred             ECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCC-CCccCCCCCCCCcCcCCCCCCCCEE
Confidence            378899877   897 889998    67899999999998     899999995 9998744324688988889989999


Q ss_pred             e----eCCCCeeecCCCCCCC-----CCCCCC-CCCCcCCCC-CCCCEEeecCCCcceecCCCCC
Q psy9687          71 V----DKVKDYLCECYPGYTG-----KTCADD-IKECESNPC-QYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        71 ~----~~~~~~~c~C~~g~~~-----~~c~~~-~~~c~~~~c-~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      +    +..+.|.|.|++||.+     ..|... +++|. .+| .+++.|++..++|.|.|...+.
T Consensus       106 ~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~-~~C~~~~~~C~n~~g~y~C~C~~G~~  169 (186)
T 1z1y_A          106 IVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ-LXCNTDNEVCXNVEGVYXCQCMEGFT  169 (186)
T ss_dssp             EEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC-CCCCTTTEEEEEETTEEEEEECTTCE
T ss_pred             eeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc-ccccccCcceecCCCCeeeECCCCCc
Confidence            8    7778899999999987     667532 47887 489 8999999999999999976554

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=92.39  Aligned_cols=88  Identities=38%  Similarity=0.925  Sum_probs=77.5

Q ss_pred             eeccCCccccccc------------ccCCCCCCCCCCCCEEe-------ecCCceeEecCCCCccCCCCCcCCCcCcCCC
Q psy9687           3 VLWSQNGLRLCET------------NIDDCESGPCLNGGLCK-------DLLNNYTCNCQQTGYTGPHCEINIDDCAPNP   63 (141)
Q Consensus         3 ~~~~~~~g~~C~~------------~~~~c~~~~c~~~~~C~-------~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~   63 (141)
                      .|.++|+|..|+.            ++++|...+|.+++.|.       ++.++|.|.|.+ ||.|..|+.++++|...+
T Consensus        26 ~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~-G~~G~~C~~~i~~C~~~~  104 (143)
T 4d90_A           26 ECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPR-GFNGIHCQHNINECEVEP  104 (143)
T ss_dssp             ECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCT-TEESTTSCEECCTTTTCC
T ss_pred             ECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcC-CCcCCCcccCCCcCCCCC
Confidence            3778999999974            45778888999999998       566789999995 999999976889999889


Q ss_pred             CCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          64 CKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        64 c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      |..++.|++..+.|.|.|++||.|+.+.
T Consensus       105 C~~~~~C~~~~g~~~C~C~~G~~G~~c~  132 (143)
T 4d90_A          105 CKNGGICTDLVANYSCECPGEFMGRNCQ  132 (143)
T ss_dssp             SCTTCEEEEETTEEEEECCTTCBSTTSC
T ss_pred             CCCCCEeECCCCCeEeECCCCCccCCce
Confidence            9999999999999999999999998775

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.58  E-value=5.4e-15  Score=109.28  Aligned_cols=106  Identities=29%  Similarity=0.753  Sum_probs=89.0

Q ss_pred             ccCCCCCCCCCCCCEEeecCC-ceeE-ecCCCCccC--CCCCcCCCcCcCCC--CCCCC---EEeeCCCCeeec-CCCCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLN-NYTC-NCQQTGYTG--PHCEINIDDCAPNP--CKNGA---RCVDKVKDYLCE-CYPGY   85 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g-~~~c-~c~~~g~~g--~~c~~~~~~c~~~~--c~~~~---~c~~~~~~~~c~-C~~g~   85 (141)
                      ++++|...||.+++.|.+..+ +|.| .|.+ ||+|  ..|+ ++++|...+  |..++   .|+++.++|.|. |++||
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~-GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy   79 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPV-GFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY   79 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSCEEECCCCT-TBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTE
T ss_pred             cccccCCCCCCCCCEEecCCCCCeECCcCCC-ccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCCCc
Confidence            678898899999999999875 5999 9994 9997  7895 889998777  98888   899999999998 99999


Q ss_pred             CCCCCC--------------CCCCCCcC--CCCCCCCEEeecC----CCcceecCCCC
Q psy9687          86 TGKTCA--------------DDIKECES--NPCQYGGTCLEHS----NMSLYQRSDLP  123 (141)
Q Consensus        86 ~~~~c~--------------~~~~~c~~--~~c~~~~~C~~~~----~~~~~~~~~~~  123 (141)
                      .|..+.              .++++|..  .+|+++++|++..    ++|.|.|...+
T Consensus        80 ~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy  137 (634)
T 1yo8_A           80 RGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGY  137 (634)
T ss_dssp             EECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTE
T ss_pred             ccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCc
Confidence            876542              47889986  4899999999998    89999886544

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.46  E-value=4.2e-14  Score=87.07  Aligned_cols=97  Identities=26%  Similarity=0.645  Sum_probs=80.2

Q ss_pred             CCCCCCCEEeecCCceeEecCCCCccC---------CCCCcCCCcCcCC---CCCCCCEEeeCCCCeeecCCCCCCCC--
Q psy9687          23 GPCLNGGLCKDLLNNYTCNCQQTGYTG---------PHCEINIDDCAPN---PCKNGARCVDKVKDYLCECYPGYTGK--   88 (141)
Q Consensus        23 ~~c~~~~~C~~~~g~~~c~c~~~g~~g---------~~c~~~~~~c~~~---~c~~~~~c~~~~~~~~c~C~~g~~~~--   88 (141)
                      .+|.+++.|.+.   |.|.|.+ ||+|         ..|+ ++++|...   +|..++.|+++.++|.|.|++||.+.  
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~-G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~   81 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNP-GFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG   81 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECT-TEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTC
T ss_pred             CcCCCCCEEcCC---CEEeCCC-CCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcC
Confidence            568888999874   8999995 9987         5774 78899864   79888999999999999999999765  


Q ss_pred             ----------CCCCCCCCCcC--CCCCCCCEEeecCCCcceecCCCCCC
Q psy9687          89 ----------TCADDIKECES--NPCQYGGTCLEHSNMSLYQRSDLPAL  125 (141)
Q Consensus        89 ----------~c~~~~~~c~~--~~c~~~~~C~~~~~~~~~~~~~~~~~  125 (141)
                                .| .++++|..  .+|.+++.|++..++|.|.|...+..
T Consensus        82 ~~~~~~~~~~~C-~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g  129 (143)
T 2bou_A           82 AKTFKNESENTC-QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP  129 (143)
T ss_dssp             CSCBSSGGGCCE-EECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCB
T ss_pred             ccccccCCCCCc-CCccCccCcCCCCCCCCEEECCCCCEEeeCCCCccc
Confidence                      45 37888975  68999999999999999998765543

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.42  E-value=1.5e-14  Score=92.82  Aligned_cols=100  Identities=22%  Similarity=0.517  Sum_probs=82.8

Q ss_pred             CCCCCCCCCEEeecCCceeEecCCCCccCC---CCCcCCCcCc----CCCCCCCCEEeeCC-----CCeeecCCCCCCCC
Q psy9687          21 ESGPCLNGGLCKDLLNNYTCNCQQTGYTGP---HCEINIDDCA----PNPCKNGARCVDKV-----KDYLCECYPGYTGK   88 (141)
Q Consensus        21 ~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~---~c~~~~~~c~----~~~c~~~~~c~~~~-----~~~~c~C~~g~~~~   88 (141)
                      ...||.++ +|.+..++|+|.|.+ ||.|.   .|+ ++++|.    ..+|..++.|++..     ++|.|.|++||.+.
T Consensus         9 ~~~pC~ng-~C~~~~g~~~C~C~~-G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~   85 (186)
T 1z1y_A            9 VDTICXNG-QLVQMSNHFXCMCNE-GLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLX   85 (186)
T ss_dssp             TTCCCBTE-EEEECSSCEEEEECT-TEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEE
T ss_pred             CCCCCCCC-EeECCCCCeEeECCC-CCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccC
Confidence            45678865 999999999999995 99876   785 788998    67798889999998     89999999999876


Q ss_pred             CCCCCCCCCcCCCCCCCCEEe----ecCCCcceecCCCC
Q psy9687          89 TCADDIKECESNPCQYGGTCL----EHSNMSLYQRSDLP  123 (141)
Q Consensus        89 ~c~~~~~~c~~~~c~~~~~C~----~~~~~~~~~~~~~~  123 (141)
                      .+.-.+++|...+|.+++.|+    +..+++.|.|...+
T Consensus        86 ~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy  124 (186)
T 1z1y_A           86 EDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGX  124 (186)
T ss_dssp             TTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEE
T ss_pred             CCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCC
Confidence            443347899988999999998    67778888886544

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.42  E-value=3.1e-13  Score=76.90  Aligned_cols=83  Identities=23%  Similarity=0.607  Sum_probs=67.7

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC-cCCCcCcCCCCCCCCEEeeCC--CCeee
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE-INIDDCAPNPCKNGARCVDKV--KDYLC   79 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~-~~~~~c~~~~c~~~~~c~~~~--~~~~c   79 (141)
                      .|.++|+|..|  ++++|...||.      +..+.|.|.|.+ ||.  .|+ .++++|...||.+++.|++..  +.|.|
T Consensus         5 ~C~~g~~g~~c--~~~~c~~~pC~------n~~~~y~C~C~~-G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C   73 (91)
T 1tpg_A            5 ICRDEKTQMIY--QQHQSWLRPVL------RSNRVEYCWCNS-GRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVC   73 (91)
T ss_dssp             CCBCSSSCCBC--CSSCEEEEECS------SSSCEEEEECSS-SCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEE
T ss_pred             ECCCCCcCCeE--CCCcccCCccc------cCCCCcEeECCC-CCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEe
Confidence            57899999998  46777666554      456789999994 997  785 467889889999999999877  88999


Q ss_pred             cCCCCCCCCCCCCCCCC
Q psy9687          80 ECYPGYTGKTCADDIKE   96 (141)
Q Consensus        80 ~C~~g~~~~~c~~~~~~   96 (141)
                      .|++||.|..|+.++++
T Consensus        74 ~C~~G~~G~~Ce~~ide   90 (91)
T 1tpg_A           74 QCPEGFAGKSCEIDTRA   90 (91)
T ss_dssp             ECCTTCBSSSCCBCSSC
T ss_pred             ECCCCCcCCcCCcCCCC
Confidence            99999999999766654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.40  E-value=4e-13  Score=82.64  Aligned_cols=84  Identities=25%  Similarity=0.718  Sum_probs=70.4

Q ss_pred             eeccCCcc---------cccccccCCCCCC---CCCCCCEEeecCCceeEecCCCCccCC------------CCCcCCCc
Q psy9687           3 VLWSQNGL---------RLCETNIDDCESG---PCLNGGLCKDLLNNYTCNCQQTGYTGP------------HCEINIDD   58 (141)
Q Consensus         3 ~~~~~~~g---------~~C~~~~~~c~~~---~c~~~~~C~~~~g~~~c~c~~~g~~g~------------~c~~~~~~   58 (141)
                      .|.++|+|         +.|+ ++++|...   +|.+++.|+++.++|.|.|.+ ||.+.            .|+ ++++
T Consensus        22 ~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~-Gy~g~~~~~~~~~~~~~~C~-dide   98 (143)
T 2bou_A           22 RCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGSYDCVCSP-GYEPVSGAKTFKNESENTCQ-DVDE   98 (143)
T ss_dssp             EECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSCEEEEECT-TEEETTCCSCBSSGGGCCEE-ECCH
T ss_pred             eCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCCeEeECCC-CcccCcCccccccCCCCCcC-CccC
Confidence            46788876         6886 89999875   799889999999999999994 99875            563 7788


Q ss_pred             Cc--CCCCCCCCEEeeCCCCeeecCCCCCCCCC
Q psy9687          59 CA--PNPCKNGARCVDKVKDYLCECYPGYTGKT   89 (141)
Q Consensus        59 c~--~~~c~~~~~c~~~~~~~~c~C~~g~~~~~   89 (141)
                      |.  ..+|..++.|+++.++|.|.|++||.+..
T Consensus        99 C~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~  131 (143)
T 2bou_A           99 CSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH  131 (143)
T ss_dssp             HHHTCCCCCTTSEEEECSSCEEEECCSSSCBCT
T ss_pred             ccCcCCCCCCCCEEECCCCCEEeeCCCCcccCC
Confidence            87  36798889999999999999999998754

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.39  E-value=1.6e-13  Score=81.81  Aligned_cols=98  Identities=30%  Similarity=0.637  Sum_probs=78.0

Q ss_pred             ccCCCCCCCCCCCCEEeec-CCceeEecCCCCccCCCCCcCCCcC----cCCCCCCCCEEeeCCCCeeecCCCCCC---C
Q psy9687          16 NIDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEINIDDC----APNPCKNGARCVDKVKDYLCECYPGYT---G   87 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~-~g~~~c~c~~~g~~g~~c~~~~~~c----~~~~c~~~~~c~~~~~~~~c~C~~g~~---~   87 (141)
                      ++++|...||.+  .|+++ .++|.|.|.+ ||.|...  ++++|    ...+|.  +.|.+ .+.|.|.|++||.   +
T Consensus         3 dideC~~~pC~~--~C~~~~~g~y~C~C~~-Gy~g~~~--~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g   74 (118)
T 1dx5_I            3 PVDPCFRANCEY--QCQPLDQTSYLCVCAE-GFAPIPH--EPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILDDG   74 (118)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCT-TEEEETT--EEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEETT
T ss_pred             ccccCCCCCCCC--CCCCCCCCCEEeECCC-CccccCC--CCCccccccCCCCCC--CcccC-CCCeEeECCCCccCCCC
Confidence            688998889975  99999 8999999995 9987743  23333    334443  57877 5889999999998   7


Q ss_pred             CCCCCCCCCCcC-CCCCCCCEEeecCCCcceecCCCCC
Q psy9687          88 KTCADDIKECES-NPCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        88 ~~c~~~~~~c~~-~~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      ..| .++++|.. ++|  ++.|++..++|.|.|...+.
T Consensus        75 ~~C-~dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~  109 (118)
T 1dx5_I           75 FIC-TDIDECENGGFC--SGVCHNLPGTFECICGPDSA  109 (118)
T ss_dssp             TEE-EECCHHHHCSSC--SSEEEECSSSEEEEECSSSS
T ss_pred             Ccc-ccccccCCCCCC--cCeEEeCCCCEEEECCCCCc
Confidence            788 58999987 788  78999999999999976543

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.32  E-value=6.4e-12  Score=93.07  Aligned_cols=95  Identities=25%  Similarity=0.582  Sum_probs=79.4

Q ss_pred             eeccCCcc--cccccccCCCCCCC--CCCCC---EEeecCCceeEe-cCCCCccCCCCC--------------cCCCcCc
Q psy9687           3 VLWSQNGL--RLCETNIDDCESGP--CLNGG---LCKDLLNNYTCN-CQQTGYTGPHCE--------------INIDDCA   60 (141)
Q Consensus         3 ~~~~~~~g--~~C~~~~~~c~~~~--c~~~~---~C~~~~g~~~c~-c~~~g~~g~~c~--------------~~~~~c~   60 (141)
                      .|.++|+|  +.|+ ++++|...+  |.+++   .|.++.++|.|. |.+ ||.|..|.              .++++|.
T Consensus        29 ~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~-Gy~G~~c~g~g~~~~~~dg~~C~dideC~  106 (634)
T 1yo8_A           29 FCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPP-RYRGNQPVGVGLEAAKTEKQVCEPENPCK  106 (634)
T ss_dssp             CCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCT-TEEECCCEESSSHHHHSCCCCEEECCTTT
T ss_pred             cCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCC-CcccCccccccccccccCCCccccccccc
Confidence            57899988  8997 899999887  99988   999999999998 994 99877642              3678887


Q ss_pred             C--CCCCCCCEEeeCC----CCeeecCCCCCCC--CCCCC--CCCCCcC
Q psy9687          61 P--NPCKNGARCVDKV----KDYLCECYPGYTG--KTCAD--DIKECES   99 (141)
Q Consensus        61 ~--~~c~~~~~c~~~~----~~~~c~C~~g~~~--~~c~~--~~~~c~~   99 (141)
                      .  .+|..++.|+++.    ++|.|.|++||.+  ..|..  ++++|..
T Consensus       107 ~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~DiDeC~~  155 (634)
T 1yo8_A          107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPN  155 (634)
T ss_dssp             TTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEECTTSSSSCS
T ss_pred             CCCcccccCccccccccccccceeeeccCCccccCcccccccCcccccC
Confidence            4  5899899999988    8999999999986  67753  6778854

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.32  E-value=3.2e-12  Score=75.67  Aligned_cols=90  Identities=27%  Similarity=0.650  Sum_probs=61.4

Q ss_pred             ccCCCCCCC--------CCCCCEEeecCCceeEecCCCCccCCCCCcCC--CcCcCCCCCCCCEEeeCCCCeeecCCCCC
Q psy9687          16 NIDDCESGP--------CLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI--DDCAPNPCKNGARCVDKVKDYLCECYPGY   85 (141)
Q Consensus        16 ~~~~c~~~~--------c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~--~~c~~~~c~~~~~c~~~~~~~~c~C~~g~   85 (141)
                      ++++|...|        |.++++|.++.++|.|.|.+ ||.|..|+..+  ++|..........|+++.++|.|.|++||
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~-G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~   83 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRS-GWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGY   83 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECT-TEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTE
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCC-CCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCe
Confidence            677888888        88999999999999999995 99999996332  35753322222389999999999999999


Q ss_pred             CC----CCCCCCCCCCcCCCCCCCCEEee
Q psy9687          86 TG----KTCADDIKECESNPCQYGGTCLE  110 (141)
Q Consensus        86 ~~----~~c~~~~~~c~~~~c~~~~~C~~  110 (141)
                      .+    ..|. +   ....+|...+.|+.
T Consensus        84 ~~~~~g~~C~-~---~~~~pC~~~~~~i~  108 (114)
T 1aut_L           84 KLGDDLLQCH-P---AVKFPCGRPWKRME  108 (114)
T ss_dssp             EECTTSSCEE-E---CSSSCTTCCC----
T ss_pred             eECCCCCccC-c---CcccCCCCCCccCC
Confidence            74    3342 2   22346777666653

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.31  E-value=4.1e-12  Score=70.86  Aligned_cols=69  Identities=32%  Similarity=0.936  Sum_probs=59.3

Q ss_pred             ccCCCCC-CCCCCCCEEeecCCceeEecCCCCcc--CCCCCcCCCcCc-CCCCCCCCEEeeCCCCeeecCCCCCCCC
Q psy9687          16 NIDDCES-GPCLNGGLCKDLLNNYTCNCQQTGYT--GPHCEINIDDCA-PNPCKNGARCVDKVKDYLCECYPGYTGK   88 (141)
Q Consensus        16 ~~~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~--g~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~C~~g~~~~   88 (141)
                      ++++|.. .+|.+ +.|+++.++|.|.|.+ ||.  |..|+ ++++|. ..+|.+ +.|+++.++|.|.|++||.+.
T Consensus         4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~-Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A            4 DMDECKEPDVCKH-GQCINTDGSYRCECPF-GYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPG   76 (82)
T ss_dssp             CCCSSSSTTSCSS-SEECCCSSCCCEECCT-TEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCC
T ss_pred             ccccCCCCCCcCC-CEEEecCCCEEEECCC-CeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEeC
Confidence            7899985 78875 7999999999999995 997  88894 889997 677875 589999999999999999764

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.31  E-value=2.7e-12  Score=79.15  Aligned_cols=77  Identities=40%  Similarity=0.876  Sum_probs=59.0

Q ss_pred             ccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEE-eeCCCCeeecCCCCCC----
Q psy9687          12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC-VDKVKDYLCECYPGYT----   86 (141)
Q Consensus        12 ~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c-~~~~~~~~c~C~~g~~----   86 (141)
                      .|. ++++|...||.+++.|.+..++|.|.|.+ ||+|..|+ ++++|...+......| +++.++|.|.|++||.    
T Consensus        44 ~c~-dideC~~~pC~n~g~C~~~~~~y~C~C~~-G~~G~~C~-~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~d  120 (146)
T 1x7a_L           44 QYV-DGDQCEPNPCLNGGLCKDDINSYECWCQV-GFEGKNCE-LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPD  120 (146)
T ss_dssp             -------CCSSCSSCTTCEEEECSSCEEEECCS-SEESTTTC-EECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTT
T ss_pred             cCC-CcCcCCCCCCCCCCEeECCCCCEEEecCC-CCcCCcCC-CCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCC
Confidence            464 78999999999999999999999999994 99999996 5688875432222389 8899999999999997    


Q ss_pred             CCCCC
Q psy9687          87 GKTCA   91 (141)
Q Consensus        87 ~~~c~   91 (141)
                      |..|.
T Consensus       121 G~~C~  125 (146)
T 1x7a_L          121 QKSCK  125 (146)
T ss_dssp             SSSEE
T ss_pred             CCcCC
Confidence            56663

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.29  E-value=1.9e-12  Score=73.01  Aligned_cols=77  Identities=38%  Similarity=0.970  Sum_probs=62.0

Q ss_pred             ccCCCCCCC--CCCCCEEeecCCceeEecCCCCcc----CCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCC
Q psy9687          16 NIDDCESGP--CLNGGLCKDLLNNYTCNCQQTGYT----GPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKT   89 (141)
Q Consensus        16 ~~~~c~~~~--c~~~~~C~~~~g~~~c~c~~~g~~----g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~   89 (141)
                      ++++|...|  | +++.|.++.++|.|.|.+ ||.    |+.|+ ++++|...+|.  +.|+++.++|.|.|+ ++.|..
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~-G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~g~y~C~C~-g~~G~~   75 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPE-GYRYNLKSKSCE-DIDECSENMCA--QLCVNYPGGYTCYCD-GKKGFK   75 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSST-TCEEETTTTEEE-CCCHHHHSCCS--SEECCCSSSCCEECC-SSSCCB
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCC-CceECCCCCcCC-CcCeeCCCCCC--CEEEccCCCEEEECC-CCcCCc
Confidence            678898777  8 678999999999999994 998    77885 88999877886  689999999999997 666655


Q ss_pred             CCCCCCCCc
Q psy9687          90 CADDIKECE   98 (141)
Q Consensus        90 c~~~~~~c~   98 (141)
                      +..+...|.
T Consensus        76 ~~~~~~~C~   84 (87)
T 1z6c_A           76 LAQDQKSCE   84 (87)
T ss_dssp             CCTTSSSCB
T ss_pred             ccCCCCcce
Confidence            555555553

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.27  E-value=9e-12  Score=76.50  Aligned_cols=75  Identities=40%  Similarity=0.884  Sum_probs=60.6

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCC---EEeeCCC-CeeecCCCCCC----C
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGA---RCVDKVK-DYLCECYPGYT----G   87 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~---~c~~~~~-~~~c~C~~g~~----~   87 (141)
                      ++++|..+||.+++.|.+..++|.|.|.+ ||+|+.|+.+++.|..-++.+++   .|+++.+ +|.|.|++||.    |
T Consensus        46 did~C~~~pC~n~g~C~~~~g~y~C~C~~-G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG  124 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKDQLQSYICFCLP-AFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG  124 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCT-TEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTS
T ss_pred             ccCcCcCCCcCCCCEEeCCCCCEEeeCCC-CccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCC
Confidence            78899999999999999999999999995 99999997445554333333333   8999999 99999999997    6


Q ss_pred             CCCC
Q psy9687          88 KTCA   91 (141)
Q Consensus        88 ~~c~   91 (141)
                      ..|.
T Consensus       125 ~~C~  128 (142)
T 2c4f_L          125 VSCT  128 (142)
T ss_dssp             SCEE
T ss_pred             CCCC
Confidence            6664

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.23  E-value=2.2e-12  Score=82.86  Aligned_cols=76  Identities=39%  Similarity=0.967  Sum_probs=26.6

Q ss_pred             ccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC-CcCcCC--CCCCCCEEeeCCCCeeecCCCCCC--
Q psy9687          12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI-DDCAPN--PCKNGARCVDKVKDYLCECYPGYT--   86 (141)
Q Consensus        12 ~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~-~~c~~~--~c~~~~~c~~~~~~~~c~C~~g~~--   86 (141)
                      .|. ++++|...||.+++.|.+..++|.|.|.+ ||.|..|+..+ ++|...  +|..  .|.+..++|.|.|++||.  
T Consensus        38 ~c~-dideC~~~pC~ngg~C~n~~g~y~C~C~~-Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~  113 (195)
T 1nfu_B           38 KYK-DGDQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLA  113 (195)
T ss_dssp             ---------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEEC
T ss_pred             cCC-CCcccCCCCCCCCCEeECCCCCeeEeCCC-CceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeC
Confidence            464 88999999999999999999999999995 99999997556 778754  4543  899999999999999998  


Q ss_pred             --CCCCC
Q psy9687          87 --GKTCA   91 (141)
Q Consensus        87 --~~~c~   91 (141)
                        |..|.
T Consensus       114 ~dG~~C~  120 (195)
T 1nfu_B          114 DNGKACI  120 (195)
T ss_dssp             TTSSCEE
T ss_pred             CCCCccc
Confidence              77774

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.22  E-value=8.9e-12  Score=70.12  Aligned_cols=69  Identities=36%  Similarity=0.997  Sum_probs=57.2

Q ss_pred             ccCCCCCCC--CCCCCEEeecCCceeEecCCCCcc-----CCCCCcCCCcCcCCC--CCCCCEEeeCCCCeeecCCCCCC
Q psy9687          16 NIDDCESGP--CLNGGLCKDLLNNYTCNCQQTGYT-----GPHCEINIDDCAPNP--CKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        16 ~~~~c~~~~--c~~~~~C~~~~g~~~c~c~~~g~~-----g~~c~~~~~~c~~~~--c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ++++|...+  |.+ +.|.++.++|.|.|.+ ||.     |..|+ ++++|...+  |. ++.|+++.++|.|.|++||.
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~-Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~   77 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDE-GYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQ   77 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCS-SEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCC-CcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCcc
Confidence            678898765  865 4999999999999995 997     67885 889997655  54 57999999999999999997


Q ss_pred             CC
Q psy9687          87 GK   88 (141)
Q Consensus        87 ~~   88 (141)
                      +.
T Consensus        78 ~~   79 (86)
T 1lmj_A           78 LS   79 (86)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.19  E-value=3.1e-12  Score=80.26  Aligned_cols=106  Identities=22%  Similarity=0.558  Sum_probs=71.7

Q ss_pred             ccCCCC-CCCCCCCCEEeecCCceeEecCCCCcc----CCCCCcCCCc--CcCC--CC--CCCCEEeeCCC----Ceeec
Q psy9687          16 NIDDCE-SGPCLNGGLCKDLLNNYTCNCQQTGYT----GPHCEINIDD--CAPN--PC--KNGARCVDKVK----DYLCE   80 (141)
Q Consensus        16 ~~~~c~-~~~c~~~~~C~~~~g~~~c~c~~~g~~----g~~c~~~~~~--c~~~--~c--~~~~~c~~~~~----~~~c~   80 (141)
                      ++++|. ..||. ++.|.++.++|.|.|.+ ||.    |+.|+ ++++  |...  ++  ..++.|.+..+    .|.|.
T Consensus         2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~-Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~   78 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTPGSYICDCPP-DFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC   78 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTEEEEECCT-TCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHH
T ss_pred             ccccCCCCCCCC-CCEeECCCCCEEEeCCC-CCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceee
Confidence            688897 47896 68999999999999995 997    78885 6665  6532  22  23556766554    45666


Q ss_pred             CCCCCC---------------------------CC---CCCCCCCCCcCC--CCCCCCEEeecCCCcceecCCCCCC
Q psy9687          81 CYPGYT---------------------------GK---TCADDIKECESN--PCQYGGTCLEHSNMSLYQRSDLPAL  125 (141)
Q Consensus        81 C~~g~~---------------------------~~---~c~~~~~~c~~~--~c~~~~~C~~~~~~~~~~~~~~~~~  125 (141)
                      |++||.                           +.   .+..++++|...  +|.+ +.|++..++|.|.|...+..
T Consensus        79 C~~G~~~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~~gsy~C~C~~Gy~g  154 (162)
T 1uzk_A           79 CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYL  154 (162)
T ss_dssp             TTTCCEETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEECSSCEEEECCTTCCB
T ss_pred             CCCCCCcCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcCCCCEEeeCCCCccC
Confidence            665543                           22   122588999754  5885 69999999999999765543

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.17  E-value=1.5e-11  Score=77.56  Aligned_cols=106  Identities=27%  Similarity=0.661  Sum_probs=78.1

Q ss_pred             eeccCCcccccccccCCCCCCCCC-CCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCC-CCCCCEEeeCCCCeeec
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCL-NGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNP-CKNGARCVDKVKDYLCE   80 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~-~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~-c~~~~~c~~~~~~~~c~   80 (141)
                      .|.++|+|..|+.  +.|.. .|. .++.|.+   .+.|.|.+ +|.|..|+    +|...+ |.+ +.|+   +.+.|.
T Consensus        53 ~C~~G~~G~~C~~--~~C~~-~C~~~~g~C~~---~~~C~C~~-G~~G~~C~----~C~~~~~C~~-g~C~---~~~~C~  117 (169)
T 2vj2_A           53 TCMEGWMGPECNR--AICRQ-GCSPKHGSCKL---PGDCRCQY-GWQGLYCD----KCIPHPGCVH-GICN---EPWQCL  117 (169)
T ss_dssp             EECTTEESTTSCE--ECCCT-TCCTTTEECSS---TTCCEECT-TEESSSSC----EECCCTTCSS-EECS---STTCCE
T ss_pred             ECCCCCcCCCCCC--CCCCC-CCCCCCcccCC---CCeeECCC-CCCCCCcc----cCCCCCCCCC-CCcC---CCCEEe
Confidence            4788888888853  34543 354 4456754   46899984 99998884    244444 553 3775   567899


Q ss_pred             CCCCCCCCCCCCCCCCCcC-CCCCCCCEEeec-CCCcceecCCCC
Q psy9687          81 CYPGYTGKTCADDIKECES-NPCQYGGTCLEH-SNMSLYQRSDLP  123 (141)
Q Consensus        81 C~~g~~~~~c~~~~~~c~~-~~c~~~~~C~~~-~~~~~~~~~~~~  123 (141)
                      |++||.|..|+.++++|.. .+|.++++|++. .+.+.|.|...+
T Consensus       118 C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~  162 (169)
T 2vj2_A          118 CETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY  162 (169)
T ss_dssp             ECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTC
T ss_pred             CCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCC
Confidence            9999999999778888975 789999999986 778999886544

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.14  E-value=2.1e-12  Score=79.75  Aligned_cols=106  Identities=30%  Similarity=0.618  Sum_probs=71.1

Q ss_pred             cccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC---cCCC--cCcC-----------CCCCCCCEEeeCCCC--
Q psy9687          15 TNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE---INID--DCAP-----------NPCKNGARCVDKVKD--   76 (141)
Q Consensus        15 ~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~---~~~~--~c~~-----------~~c~~~~~c~~~~~~--   76 (141)
                      .++++|...||.+ ++|+++.++|.|.|.+ ||++..+.   .+..  .|..           ..+.....|.+..+.  
T Consensus         2 ~dideC~~~pC~n-g~C~n~~g~y~C~C~~-G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~~g~~~   79 (147)
T 2w86_A            2 ADIDECESSPCIN-GVCKNSPGSFICECSS-ESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAW   79 (147)
T ss_dssp             CCCCGGGGCCSBT-SEEEEETTEEEEECCT-TEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTTTCSEE
T ss_pred             CcCccCcCCCCCC-CEeECCCCCEEeECCC-CcccCCCCCeecCCCCCcccCCCCCCccccCCCccccCCccccCcCccc
Confidence            4789999999986 6999999999999995 99865331   0111  1100           000000111122222  


Q ss_pred             --------eeecCCCCCC---CCCCCCCCCCCcCC--CCCCCCEEeecCCCcceecCCCCC
Q psy9687          77 --------YLCECYPGYT---GKTCADDIKECESN--PCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        77 --------~~c~C~~g~~---~~~c~~~~~~c~~~--~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                              |.|.|++||.   |..|. ++++|...  +|.+ +.|++..++|.|.|...+.
T Consensus        80 g~~C~~c~~~C~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~  138 (147)
T 2w86_A           80 GSPCTLCQVDPICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMT  138 (147)
T ss_dssp             TTTTEECCCCTTTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTCC
T ss_pred             CCCcccCCCcccCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCCc
Confidence                    6689999994   88885 89999854  4986 4999999999999875554

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.13  E-value=9.2e-12  Score=75.73  Aligned_cols=76  Identities=39%  Similarity=0.967  Sum_probs=25.5

Q ss_pred             ccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC-CcCcCC--CCCCCCEEeeCCCCeeecCCCCCC--
Q psy9687          12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI-DDCAPN--PCKNGARCVDKVKDYLCECYPGYT--   86 (141)
Q Consensus        12 ~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~-~~c~~~--~c~~~~~c~~~~~~~~c~C~~g~~--   86 (141)
                      .|. ++++|...||.+++.|.+..++|.|.|.+ ||.|..|+..+ ++|...  +|..  .|++..++|.|.|++||.  
T Consensus        38 ~c~-d~d~C~~~pC~n~g~C~~~~~~y~C~C~~-G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~  113 (134)
T 2vh0_B           38 KYK-DGDQCETSPCQNQGKCKDGLGEYTCTCLE-GFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLA  113 (134)
T ss_dssp             ---------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEEC
T ss_pred             cCC-CcCcCCCCCCCCcCCcccCCCCEEeeCCC-CccCCccccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEEC
Confidence            454 78999999999999999999999999994 99999997446 778753  3543  899999999999999998  


Q ss_pred             --CCCCC
Q psy9687          87 --GKTCA   91 (141)
Q Consensus        87 --~~~c~   91 (141)
                        |..|.
T Consensus       114 ~~g~~C~  120 (134)
T 2vh0_B          114 DNGKACI  120 (134)
T ss_dssp             TTSSCEE
T ss_pred             CCCCccC
Confidence              66663

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.12  E-value=3.9e-11  Score=68.13  Aligned_cols=76  Identities=21%  Similarity=0.363  Sum_probs=61.0

Q ss_pred             ceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCC-CCCCCCcCCCCCCCCEEeecC--C
Q psy9687          37 NYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCA-DDIKECESNPCQYGGTCLEHS--N  113 (141)
Q Consensus        37 ~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~-~~~~~c~~~~c~~~~~C~~~~--~  113 (141)
                      +|.|.|.+ ||.|..|  ++++|+..||      ++..+.|.|.|++||.  .|+ .++++|..++|.++++|++..  +
T Consensus         1 sy~C~C~~-g~~g~~c--~~~~c~~~pC------~n~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~   69 (91)
T 1tpg_A            1 SYQVICRD-EKTQMIY--QQHQSWLRPV------LRSNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFS   69 (91)
T ss_dssp             CCCCCCBC-SSSCCBC--CSSCEEEEEC------SSSSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSS
T ss_pred             CeeeECCC-CCcCCeE--CCCcccCCcc------ccCCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCC
Confidence            47899995 9999888  4677766554      3456789999999997  775 478999999999999999987  8


Q ss_pred             CcceecCCCC
Q psy9687         114 MSLYQRSDLP  123 (141)
Q Consensus       114 ~~~~~~~~~~  123 (141)
                      .+.|.|...+
T Consensus        70 ~~~C~C~~G~   79 (91)
T 1tpg_A           70 DFVCQCPEGF   79 (91)
T ss_dssp             CEEEECCTTC
T ss_pred             CeEeECCCCC
Confidence            8888886443

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.09  E-value=2.8e-11  Score=70.71  Aligned_cols=77  Identities=27%  Similarity=0.657  Sum_probs=35.1

Q ss_pred             eeccCCcccccccccCCCCCC--CCCCCCEEeecCCceeEecCCCCccC---CCCCcCCCcCcC-CCCCCCCEEeeCCCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESG--PCLNGGLCKDLLNNYTCNCQQTGYTG---PHCEINIDDCAP-NPCKNGARCVDKVKD   76 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~--~c~~~~~C~~~~g~~~c~c~~~g~~g---~~c~~~~~~c~~-~~c~~~~~c~~~~~~   76 (141)
                      ....+|.+..|  ++++|...  .|.  +.|.+..++|.|.|.+ ||.+   ..|+ ++++|.. .+|.  +.|+++.++
T Consensus        17 ~~~~~~~~~~C--d~neC~~~~~~C~--~~C~n~~g~y~C~C~~-Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gs   88 (107)
T 2w2n_E           17 TTENLYFQGAM--GTNECLDNNGGCS--YVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGG   88 (107)
T ss_dssp             ---CCCCSCCB--SCCGGGTGGGGCS--SEEECCSBSCEEECCT-TCEEETTTEEE-C----------------------
T ss_pred             ccCCCcCCCCC--cCccCcCCCCCCC--CEeEeCCCCeEEECCC-CccccCCCccc-cccccCCCCCcC--CeeecCCCC
Confidence            45677888999  67888754  354  4899999999999994 9986   7785 8888873 5674  689999999


Q ss_pred             eeecCCCCCCC
Q psy9687          77 YLCECYPGYTG   87 (141)
Q Consensus        77 ~~c~C~~g~~~   87 (141)
                      |.|.|++||.+
T Consensus        89 y~C~C~~Gy~~   99 (107)
T 2w2n_E           89 YKCQCEEGFQL   99 (107)
T ss_dssp             -----------
T ss_pred             EEEECCCCceE
Confidence            99999999975

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.08  E-value=1.4e-10  Score=79.88  Aligned_cols=69  Identities=38%  Similarity=0.992  Sum_probs=60.6

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcC---CCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAP---NPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~---~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      ++++|...||.+++.|.+..++|.|.|.+ ||.|+.|+.++++|..   .+|.+  .|.+..+.|.|.|++||.+
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~-g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~   75 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSP-GYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRL   75 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSS-SCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEEC
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCC-CCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccccc
Confidence            67889999999999999999999999994 9999999778999986   67865  8999999999999999975

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.07  E-value=3e-10  Score=85.18  Aligned_cols=104  Identities=25%  Similarity=0.433  Sum_probs=78.5

Q ss_pred             eeccCCccccccccc--------CCCCCC----CCCCCCEEeecCCceeEecC----CCCccCCCCCcCCCcCcC---CC
Q psy9687           3 VLWSQNGLRLCETNI--------DDCESG----PCLNGGLCKDLLNNYTCNCQ----QTGYTGPHCEINIDDCAP---NP   63 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~--------~~c~~~----~c~~~~~C~~~~g~~~c~c~----~~g~~g~~c~~~~~~c~~---~~   63 (141)
                      .|.++|.|..|+..+        ++|...    +|.+++.|..    +.|.|.    + ||.|..|+.+...|..   .+
T Consensus       461 ~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~~~~~-Gy~G~~Ce~~~~~C~~~~~~~  535 (690)
T 3fcs_B          461 RCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSSDFG-KITGKYCECDDFSCVRYKGEM  535 (690)
T ss_dssp             EECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSEEECCCSSC-CCBSTTSCBCSSCCCBSSSSB
T ss_pred             EeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeecCCCC-CeeCCCcCcccCcCcCCCCCC
Confidence            478899999997554        567653    3888888873    489998    6 8999999766677763   46


Q ss_pred             CCCCCEEeeCCCCeeecCCCCCCCCCCC--CCCCCCcC---CCCCCCCEEeecCCCcceec
Q psy9687          64 CKNGARCVDKVKDYLCECYPGYTGKTCA--DDIKECES---NPCQYGGTCLEHSNMSLYQR  119 (141)
Q Consensus        64 c~~~~~c~~~~~~~~c~C~~g~~~~~c~--~~~~~c~~---~~c~~~~~C~~~~~~~~~~~  119 (141)
                      |..++.|..    +.|.|.+||.|..|+  .+.+.|..   .+|.+++.|..    ..|.|
T Consensus       536 C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~----g~C~C  588 (690)
T 3fcs_B          536 CSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSCVC  588 (690)
T ss_dssp             GGGSEEEET----TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET----TEEEC
T ss_pred             CCCCCEecC----CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC----CEEEC
Confidence            888888865    569999999999886  56778875   46888999964    26666

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.98  E-value=4.2e-10  Score=70.97  Aligned_cols=80  Identities=29%  Similarity=0.868  Sum_probs=65.3

Q ss_pred             eeccCCcccccccccCCCCCCC-CCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcC-CCCCCCCEEeeC-CCCeee
Q psy9687           3 VLWSQNGLRLCETNIDDCESGP-CLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAP-NPCKNGARCVDK-VKDYLC   79 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~-c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~-~~c~~~~~c~~~-~~~~~c   79 (141)
                      .|.++|.|..|+    +|...+ |.++ .|.   +.+.|.|.+ ||.|..|+.++++|.. .+|.+++.|++. .+.|.|
T Consensus        86 ~C~~G~~G~~C~----~C~~~~~C~~g-~C~---~~~~C~C~~-G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C  156 (169)
T 2vj2_A           86 RCQYGWQGLYCD----KCIPHPGCVHG-ICN---EPWQCLCET-NWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQC  156 (169)
T ss_dssp             EECTTEESSSSC----EECCCTTCSSE-ECS---STTCCEECT-TEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEE
T ss_pred             ECCCCCCCCCcc----cCCCCCCCCCC-CcC---CCCEEeCCC-CCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEe
Confidence            478899999995    255555 7654 786   568999995 9999999767888874 789999999986 788999


Q ss_pred             cCCCCCCCCCCC
Q psy9687          80 ECYPGYTGKTCA   91 (141)
Q Consensus        80 ~C~~g~~~~~c~   91 (141)
                      .|++||.|..|+
T Consensus       157 ~C~~G~~G~~Ce  168 (169)
T 2vj2_A          157 SCPEGYSGPNCE  168 (169)
T ss_dssp             ECCTTCCSTTSC
T ss_pred             ECCCCCcCcCcC
Confidence            999999998774

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.95  E-value=1.1e-09  Score=60.95  Aligned_cols=67  Identities=33%  Similarity=0.742  Sum_probs=55.9

Q ss_pred             CCCcCcC-CCCCCCCEEeeCCCCeeecCCCCCC--CCCCCCCCCCCc-CCCCCCCCEEeecCCCcceecCCCCC
Q psy9687          55 NIDDCAP-NPCKNGARCVDKVKDYLCECYPGYT--GKTCADDIKECE-SNPCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        55 ~~~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~--~~~c~~~~~~c~-~~~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      ++++|.. .+|.+ +.|+++.++|.|.|++||.  |..| .++++|. .++|.+ +.|++..++|.|.|...+.
T Consensus         4 dideC~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C-~dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~   74 (82)
T 1emn_A            4 DMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKNVIGGFECTCEEGFE   74 (82)
T ss_dssp             CCCSSSSTTSCSS-SEECCCSSCCCEECCTTEEEETTEE-EECCGGGTCCTTSS-SCEEECSSSEEECCSSSSC
T ss_pred             ccccCCCCCCcCC-CEEEecCCCEEEECCCCeECCCCcc-CCcccccCCCCCCC-CEeECCCCCEEeECCCCeE
Confidence            6788874 67864 7999999999999999996  8888 5899997 578986 5999999999998865544

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.91  E-value=2.6e-09  Score=73.88  Aligned_cols=91  Identities=35%  Similarity=0.869  Sum_probs=47.1

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECY   82 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~   82 (141)
                      .|.++|.|..|+.  +.|.+ +|.+++.|..   .+.|.|.+ ||.|..|+.  ..|. .+|.+++.|..   .+.|.|+
T Consensus       168 ~C~~G~~G~~C~~--~~C~~-~C~~~G~C~~---~~~C~C~~-G~~G~~C~~--~~C~-~~C~~~G~C~~---~~~C~C~  234 (324)
T 2ygq_A          168 ECPDGFHGPHCEK--ALCTP-RCMNGGLCVT---PGFCICPP-GFYGVNCDK--ANCS-TTCFNGGTCFY---PGKCICP  234 (324)
T ss_dssp             ECCTTEESSSSCE--ESSSS-CCCTTCEECS---SCCEECCT-TCBTTTTCB--CCCS-SCCCSSCCBSC---SSCBCCC
T ss_pred             ECCCCCcCCCCCC--CCCCC-CCCCCCEEcC---CCEEeCCC-CccCCCccc--CcCC-CCCCCCCeeCC---CCeeeCC
Confidence            3667777777753  34543 5777777754   35777774 777777742  3343 45666666654   2457777


Q ss_pred             CCCCCCCCCCCCCCCcCCCCCCCCEEe
Q psy9687          83 PGYTGKTCADDIKECESNPCQYGGTCL  109 (141)
Q Consensus        83 ~g~~~~~c~~~~~~c~~~~c~~~~~C~  109 (141)
                      +||.|..|+  ++.|. .+|.+++.|.
T Consensus       235 ~G~~G~~C~--~~~C~-~~C~~~g~C~  258 (324)
T 2ygq_A          235 PGLEGEQCE--ISKCP-QPCRNGGKCI  258 (324)
T ss_dssp             TTCCTTTTC------------------
T ss_pred             CCccCCCCC--cCcCC-CcCCCCCEEC
Confidence            777776663  33453 4566666665

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.90  E-value=3.5e-12  Score=85.08  Aligned_cols=85  Identities=13%  Similarity=0.083  Sum_probs=62.8

Q ss_pred             ccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcC------cC----------------------
Q psy9687          10 LRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDC------AP----------------------   61 (141)
Q Consensus        10 g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c------~~----------------------   61 (141)
                      |..|. ..++|...||.++++|++...+|+|.|+. ||+|..|+.++++|      ..                      
T Consensus        93 G~~c~-~~~eC~s~pC~ngG~C~~~~~sy~C~C~~-Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~  170 (267)
T 4fbr_A           93 GARDK-QNIVAVSIKSNDGGKTLTGTTTYNGEGPI-GFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINV  170 (267)
T ss_dssp             CCCSS-CCEEEEEEECSSTTSEEEEEEEETTSCCE-EEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEE
T ss_pred             cCccc-cccccCCCCCCCCCEEecCCccEEeeCCC-CccccCCCCCcccccccCCcCCccccCCcceecccccccccccC
Confidence            44443 23356667788888888888899999995 99988887655542      11                      


Q ss_pred             -CCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCC
Q psy9687          62 -NPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKE   96 (141)
Q Consensus        62 -~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~   96 (141)
                       .+|.+++.|++....|+|.|++||+|..|..++++
T Consensus       171 ~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~~i~e  206 (267)
T 4fbr_A          171 DAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYT  206 (267)
T ss_dssp             EEECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEE
T ss_pred             CCCCCCCCEeeCCCCCeEEeCCCCccccccccccce
Confidence             23566777888788899999999999888777776

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.88  E-value=2.9e-09  Score=54.32  Aligned_cols=46  Identities=26%  Similarity=0.549  Sum_probs=35.9

Q ss_pred             ccccccccCCCCCCCCCCCCEEe-----ecCCceeEecCCCCccCCCCCcCC
Q psy9687          10 LRLCETNIDDCESGPCLNGGLCK-----DLLNNYTCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        10 g~~C~~~~~~c~~~~c~~~~~C~-----~~~g~~~c~c~~~g~~g~~c~~~~   56 (141)
                      |..|..++++|...||.++++|.     ...+.|+|.|.+ +|+|+.|+..+
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~-g~~G~~CE~~v   51 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPN-EFTGDRCQNYV   51 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECT-TEESTTSCEEC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCC-CCcCCCcCccC
Confidence            45788889999999999999995     445689999994 99999997543

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=75.69  Aligned_cols=102  Identities=33%  Similarity=0.749  Sum_probs=35.4

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECY   82 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~   82 (141)
                      .|.++|.|..|+.  +.|. .+|.+++.|...   +.|.|.+ ||.|..|+  ++.|. .+|.+++.|..   .+.|.|+
T Consensus       200 ~C~~G~~G~~C~~--~~C~-~~C~~~G~C~~~---~~C~C~~-G~~G~~C~--~~~C~-~~C~~~g~C~~---~~~C~C~  266 (324)
T 2ygq_A          200 ICPPGFYGVNCDK--ANCS-TTCFNGGTCFYP---GKCICPP-GLEGEQCE--ISKCP-QPCRNGGKCIG---KSKCKCS  266 (324)
T ss_dssp             ECCTTCBTTTTCB--CCCS-SCCCSSCCBSCS---SCBCCCT-TCCTTTTC-----------------------------
T ss_pred             eCCCCccCCCccc--CcCC-CCCCCCCeeCCC---CeeeCCC-CccCCCCC--cCcCC-CcCCCCCEECC---CCEEECC
Confidence            4789999999963  4575 569888999763   6899995 99999995  45564 57888888863   4679999


Q ss_pred             CCCCCCCCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCC
Q psy9687          83 PGYTGKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        83 ~g~~~~~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                      +||.|..|+  .+.|. .+|.++++|.+   .+.|.|...+
T Consensus       267 ~G~~G~~C~--~~~C~-~~C~~~g~C~~---~~~C~C~~G~  301 (324)
T 2ygq_A          267 KGYQGDLCS--KPVCE-PGCGAHGTCHE---PNKCQCQEGW  301 (324)
T ss_dssp             -----------------------------------------
T ss_pred             CCCcCCCCc--CCCCC-CCCCCCCEECC---CCEeECCCCC
Confidence            999999885  45565 57888999975   3567775433

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.86  E-value=8.5e-12  Score=83.24  Aligned_cols=86  Identities=14%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             cccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCc-----------------------------C
Q psy9687           9 GLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDD-----------------------------C   59 (141)
Q Consensus         9 ~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~-----------------------------c   59 (141)
                      .|..+...+..+. .+|.++++|++..++|+|.|+ .||+|..|+..+++                             |
T Consensus        25 ~g~~~~~n~~~~~-~~c~ngG~C~~g~~~y~C~Cp-~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC  102 (267)
T 4fbr_A           25 IGARDKQNVVALD-IKSDDGGKTLKGTMTYNGEGP-IGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVA  102 (267)
T ss_dssp             CCCCSSCCEEEEE-EECSSTTSEEEEEEEETTSCC-EEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEE
T ss_pred             eccccccccccCC-CCcCCCCeecCCCCCeEEeCC-CCcccccccccccccccccCcCCCcccCCCeeeccCcccccccc
Confidence            3444443333332 358888999999999999999 49988888665554                             3


Q ss_pred             cCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCC
Q psy9687          60 APNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKE   96 (141)
Q Consensus        60 ~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~   96 (141)
                      ...||.+++.|++...+|+|.|+.||+|..|+.++++
T Consensus       103 ~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~  139 (267)
T 4fbr_A          103 VSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYS  139 (267)
T ss_dssp             EEEECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEE
T ss_pred             CCCCCCCCCEEecCCccEEeeCCCCccccCCCCCccc
Confidence            3446777788888888999999999988877665554

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.86  E-value=9.9e-10  Score=61.64  Aligned_cols=67  Identities=34%  Similarity=0.849  Sum_probs=53.7

Q ss_pred             CCCcCcCCC--CCCCCEEeeCCCCeeecCCCCCC-----CCCCCCCCCCCcCCC--CCCCCEEeecCCCcceecCCCCC
Q psy9687          55 NIDDCAPNP--CKNGARCVDKVKDYLCECYPGYT-----GKTCADDIKECESNP--CQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        55 ~~~~c~~~~--c~~~~~c~~~~~~~~c~C~~g~~-----~~~c~~~~~~c~~~~--c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      ++++|...+  |.. +.|+++.++|.|.|++||.     +..|. ++++|...+  |. ++.|++..++|.|.|...+.
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~   77 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQ   77 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSC
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCC-CCEeEcCCCCEEEECcCCcc
Confidence            567787554  754 5899999999999999996     66774 899998776  65 58999999999999875554

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.86  E-value=5.8e-09  Score=78.36  Aligned_cols=94  Identities=28%  Similarity=0.685  Sum_probs=74.6

Q ss_pred             cCCcccccccccCCCCC---CCCCCCCEEeecCCceeEecCCCCccCCCCC--cCCCcCcC---CCCCCCCEEeeCCCCe
Q psy9687           6 SQNGLRLCETNIDDCES---GPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE--INIDDCAP---NPCKNGARCVDKVKDY   77 (141)
Q Consensus         6 ~~~~g~~C~~~~~~c~~---~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~--~~~~~c~~---~~c~~~~~c~~~~~~~   77 (141)
                      ++|.|..|+.+.+.|..   .+|.+++.|..    +.|.|.+ ||.|..|+  .+++.|..   .+|..++.|...    
T Consensus       514 ~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~-Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~g----  584 (690)
T 3fcs_B          514 GKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDS-DWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECG----  584 (690)
T ss_dssp             CCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECT-TEESSSSCEECCCTTTBCTTSSBTSSSCEEETT----
T ss_pred             CCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcC-CCcCCCCccCCCCCcccCCCCCCCCCCCEEeCC----
Confidence            89999999877788875   36888889975    6999994 99999996  45677874   569999999652    


Q ss_pred             eecC-CCCCCCCCCCCCCCCCcCCCCCCCCEEee
Q psy9687          78 LCEC-YPGYTGKTCADDIKECESNPCQYGGTCLE  110 (141)
Q Consensus        78 ~c~C-~~g~~~~~c~~~~~~c~~~~c~~~~~C~~  110 (141)
                      .|.| .+||.|..|+. ...| .++|.+++.|++
T Consensus       585 ~C~C~~~Gy~G~~Ce~-C~~C-~~~C~~~g~Cv~  616 (690)
T 3fcs_B          585 SCVCIQPGSYGDTCEK-CPTC-PDACTFKKECVE  616 (690)
T ss_dssp             EEECCSTTCBSTTSCB-CTTS-CCTTTSCCGGGT
T ss_pred             EEECCCCCccCCCcCc-CCCC-CCCCCCCCCccc
Confidence            6999 99999999953 2445 467888888864

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.82  E-value=1.4e-09  Score=61.13  Aligned_cols=62  Identities=34%  Similarity=0.808  Sum_probs=52.8

Q ss_pred             CCCcCcCCC--CCCCCEEeeCCCCeeecCCCCCC----CCCCCCCCCCCcCCCCCCCCEEeecCCCcceecC
Q psy9687          55 NIDDCAPNP--CKNGARCVDKVKDYLCECYPGYT----GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRS  120 (141)
Q Consensus        55 ~~~~c~~~~--c~~~~~c~~~~~~~~c~C~~g~~----~~~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~  120 (141)
                      ++++|...+  | .++.|.++.++|.|.|++||.    +..| .++++|..++|.  +.|++..++|.|.|.
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C-~dideC~~~~C~--~~C~n~~g~y~C~C~   69 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSC-EDIDECSENMCA--QLCVNYPGGYTCYCD   69 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEE-ECCCHHHHSCCS--SEECCCSSSCCEECC
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcC-CCcCeeCCCCCC--CEEEccCCCEEEECC
Confidence            567787666  7 678899999999999999997    6778 489999888887  799999999999983

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.82  E-value=4.2e-09  Score=64.80  Aligned_cols=72  Identities=28%  Similarity=0.594  Sum_probs=54.5

Q ss_pred             CCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCCCcCCCCCCCCEE-eecCCCcceecCCCCC
Q psy9687          51 HCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTC-LEHSNMSLYQRSDLPA  124 (141)
Q Consensus        51 ~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~~C-~~~~~~~~~~~~~~~~  124 (141)
                      .| .++++|...+|.+++.|++..++|.|.|++||.|..|. ++++|...+......| ++..++|.|.|...+.
T Consensus        44 ~c-~dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~-~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~  116 (146)
T 1x7a_L           44 QY-VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE-LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYR  116 (146)
T ss_dssp             -------CCSSCSSCTTCEEEECSSCEEEECCSSEESTTTC-EECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEE
T ss_pred             cC-CCcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCCcCC-CCccccCCCCCCcCCCCCCCCCCEEeEcCCCcE
Confidence            46 37889999999999999999999999999999999995 6688986533333389 9999999998865443

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.81  E-value=7.3e-09  Score=71.34  Aligned_cols=67  Identities=28%  Similarity=0.656  Sum_probs=57.6

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCCCcC---CCCCCCCEEeecCCCcceecCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECES---NPCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~c~~---~~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                      ++++|...||.+++.|.+..++|.|.|++||.|..|+.++++|..   .+|.+  .|++..+++.|.|...+
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~   73 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGY   73 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTE
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEeccccc
Confidence            567788889999999999999999999999999999779999987   67877  99999999999886543

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.80  E-value=1e-09  Score=65.21  Aligned_cols=76  Identities=22%  Similarity=0.513  Sum_probs=58.7

Q ss_pred             eccCCcccccccccCC----CCCCCCCCCCEEeecCCceeEecCCCCcc---CCCCCcCCCcCcC-CCCCCCCEEeeCCC
Q psy9687           4 LWSQNGLRLCETNIDD----CESGPCLNGGLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCAP-NPCKNGARCVDKVK   75 (141)
Q Consensus         4 ~~~~~~g~~C~~~~~~----c~~~~c~~~~~C~~~~g~~~c~c~~~g~~---g~~c~~~~~~c~~-~~c~~~~~c~~~~~   75 (141)
                      |.++|.|..+  ++++    |...+|.  +.|.+ .++|.|.|.+ ||.   |..| .++++|.. .+|  ++.|+++.+
T Consensus        28 C~~Gy~g~~~--~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~-Gy~~~~g~~C-~dideC~~~~~C--~~~C~n~~g   98 (118)
T 1dx5_I           28 CAEGFAPIPH--EPHRCQMFCNQTACP--ADCDP-NTQASCECPE-GYILDDGFIC-TDIDECENGGFC--SGVCHNLPG   98 (118)
T ss_dssp             CCTTEEEETT--EEEEEEECCCSSEEE--CEECT-TSTTCEECCT-TEEEETTTEE-EECCHHHHCSSC--SSEEEECSS
T ss_pred             CCCCccccCC--CCCccccccCCCCCC--CcccC-CCCeEeECCC-CccCCCCCcc-ccccccCCCCCC--cCeEEeCCC
Confidence            6778887744  2233    4444554  57887 5889999995 998   8889 48899976 778  689999999


Q ss_pred             CeeecCCCCCCCC
Q psy9687          76 DYLCECYPGYTGK   88 (141)
Q Consensus        76 ~~~c~C~~g~~~~   88 (141)
                      +|.|.|++||.+.
T Consensus        99 ~y~C~C~~G~~g~  111 (118)
T 1dx5_I           99 TFECICGPDSALA  111 (118)
T ss_dssp             SEEEEECSSSSCE
T ss_pred             CEEEECCCCCccC
Confidence            9999999999753

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.78  E-value=5e-09  Score=64.19  Aligned_cols=69  Identities=28%  Similarity=0.698  Sum_probs=56.1

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCCCcCCCCCCCC---EEeecCC-CcceecCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGG---TCLEHSN-MSLYQRSDLP  123 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~---~C~~~~~-~~~~~~~~~~  123 (141)
                      ++++|...+|.+++.|++..++|.|.|++||.|..|..+++.|..-++.+++   .|++..+ +|.|.|...+
T Consensus        46 did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy  118 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGY  118 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTE
T ss_pred             ccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCc
Confidence            7788988899999999999999999999999999997556665433444454   9999998 9999886544

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.75  E-value=1.4e-08  Score=76.18  Aligned_cols=106  Identities=23%  Similarity=0.525  Sum_probs=74.2

Q ss_pred             eeccCCcccccccccC---------CCCCC----CCCCCCEEeecCCceeEecC------CCCccCCCCCcCCCcCcC--
Q psy9687           3 VLWSQNGLRLCETNID---------DCESG----PCLNGGLCKDLLNNYTCNCQ------QTGYTGPHCEINIDDCAP--   61 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~---------~c~~~----~c~~~~~C~~~~g~~~c~c~------~~g~~g~~c~~~~~~c~~--   61 (141)
                      .|.++|.|..|+-..+         .|...    +|.+++.|..  +  .|.|.      + +|.|..|+.+...|..  
T Consensus       449 ~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~--G--~C~C~~~~~~~~-G~~G~~Ce~~~~~C~~~~  523 (687)
T 3k6s_B          449 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC--G--QCLCHTSDVPGK-LIYGQYCECDTINCERYN  523 (687)
T ss_dssp             EECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEET--T--EEEECCCCSTTC-CEESTTSCEESSCSCEET
T ss_pred             EcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeC--C--EEEcCCCCCCCC-CccccccccccccccCCC
Confidence            4788999999974333         46543    3778888873  2  88888      6 8999999655666752  


Q ss_pred             -CCCCC--CCEEeeCCCCeeecCCCCCCCCCCC--CCCCCCcCC---CCCCCCEEeecCCCcceecCC
Q psy9687          62 -NPCKN--GARCVDKVKDYLCECYPGYTGKTCA--DDIKECESN---PCQYGGTCLEHSNMSLYQRSD  121 (141)
Q Consensus        62 -~~c~~--~~~c~~~~~~~~c~C~~g~~~~~c~--~~~~~c~~~---~c~~~~~C~~~~~~~~~~~~~  121 (141)
                       .+|..  ++.|..  +  .|.|.+||.|..|+  .+.+.|...   +|..++.|..    ..|.|..
T Consensus       524 ~~~C~~~~~G~C~~--g--~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~----g~C~C~~  583 (687)
T 3k6s_B          524 GQVCGGPGRGLCFC--G--KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHS  583 (687)
T ss_dssp             TEETSHHHHEEEET--T--EEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS----SCBCCST
T ss_pred             CcCcCCCCCCeEEC--C--EEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC----CEEECCC
Confidence             35776  778863  2  59999999999886  235677654   6888888865    3466643

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.73  E-value=6.8e-09  Score=52.97  Aligned_cols=47  Identities=26%  Similarity=0.646  Sum_probs=37.1

Q ss_pred             CCCCCcCCCcCcCCCCCCCCEEe-----eCCCCeeecCCCCCCCCCCCCCCC
Q psy9687          49 GPHCEINIDDCAPNPCKNGARCV-----DKVKDYLCECYPGYTGKTCADDIK   95 (141)
Q Consensus        49 g~~c~~~~~~c~~~~c~~~~~c~-----~~~~~~~c~C~~g~~~~~c~~~~~   95 (141)
                      |..|+.++++|...||.+++.|.     +..+.|.|.|++||.|..|+..+.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCc
Confidence            45676678999999999999994     556789999999999999976553

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.73  E-value=1.8e-09  Score=69.37  Aligned_cols=71  Identities=28%  Similarity=0.652  Sum_probs=21.3

Q ss_pred             CCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCC-CCCcCC--CCCCCCEEeecCCCcceecCCCCC
Q psy9687          51 HCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDI-KECESN--PCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        51 ~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~-~~c~~~--~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      .| .++++|...||.+++.|++..++|.|.|++||.|..|..++ ++|...  +|..  .|++..++|.|.|...+.
T Consensus        38 ~c-~dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~  111 (195)
T 1nfu_B           38 KY-KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYT  111 (195)
T ss_dssp             --------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEE
T ss_pred             cC-CCCcccCCCCCCCCCEeECCCCCeeEeCCCCceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCce
Confidence            35 37889998999999999999999999999999999997667 789874  4654  999999999998875443

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.72  E-value=1e-08  Score=60.46  Aligned_cols=70  Identities=21%  Similarity=0.544  Sum_probs=51.3

Q ss_pred             CCCcCcCCC--------CCCCCEEeeCCCCeeecCCCCCCCCCCCCCC--CCCcCCCCCCCCEEeecCCCcceecCCCCC
Q psy9687          55 NIDDCAPNP--------CKNGARCVDKVKDYLCECYPGYTGKTCADDI--KECESNPCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        55 ~~~~c~~~~--------c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~--~~c~~~~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      ++++|...|        |.+++.|++..++|.|.|++||.|..|+..+  ++|..........|++..++|.|.|...+.
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~   84 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYK   84 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEE
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCee
Confidence            456666666        8888999999999999999999999986433  367653322233999999999999875443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.66  E-value=2.8e-08  Score=70.52  Aligned_cols=66  Identities=32%  Similarity=0.849  Sum_probs=54.9

Q ss_pred             CCCCCCCCCCCCEEeecCCceeEecCCCCcc---CCCCCcCCCcCc-CCCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCA-PNPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~---g~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      ++|...++...+.|.++.++|.|.|.+ ||.   |+.|+ ++++|. ..+|..  .|.++.++|.|.|.+||.+
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~-G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~   70 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQL   70 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCT-TEEECSSSCEE-ECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCC
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCC-CCCcCCCCccc-CchhhhccCCCCC--ccCCCccceeeeccccccc
Confidence            467767766667999999999999995 998   78895 899997 355654  8999999999999999964

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.65  E-value=9.4e-09  Score=59.94  Aligned_cols=73  Identities=23%  Similarity=0.433  Sum_probs=34.3

Q ss_pred             CccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCC---CCCCCCCCCCcC-CCCCCCCEEeecCCCcceecCC
Q psy9687          46 GYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTG---KTCADDIKECES-NPCQYGGTCLEHSNMSLYQRSD  121 (141)
Q Consensus        46 g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~---~~c~~~~~~c~~-~~c~~~~~C~~~~~~~~~~~~~  121 (141)
                      +|.+..|  ++++|..........|.+..++|.|.|++||.+   ..|. ++++|.. .+|.  +.|++..++|.|.|..
T Consensus        21 ~~~~~~C--d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C~C~~   95 (107)
T 2w2n_E           21 LYFQGAM--GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEE   95 (107)
T ss_dssp             CCCSCCB--SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEETTTEEE-C-----------------------------
T ss_pred             CcCCCCC--cCccCcCCCCCCCCEeEeCCCCeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEEEECCC
Confidence            6778888  578887432222358999999999999999986   6785 9999974 5785  7999999999998865


Q ss_pred             CC
Q psy9687         122 LP  123 (141)
Q Consensus       122 ~~  123 (141)
                      .+
T Consensus        96 Gy   97 (107)
T 2w2n_E           96 GF   97 (107)
T ss_dssp             --
T ss_pred             Cc
Confidence            44

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.64  E-value=4.8e-09  Score=63.64  Aligned_cols=71  Identities=28%  Similarity=0.652  Sum_probs=21.0

Q ss_pred             CCCcCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCC-CCCcCC--CCCCCCEEeecCCCcceecCCCCC
Q psy9687          51 HCEINIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDI-KECESN--PCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        51 ~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~-~~c~~~--~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      .| .++++|...+|.+++.|++..++|.|.|++||.|..|..++ ++|...  +|..  .|++..++|.|.|...+.
T Consensus        38 ~c-~d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~  111 (134)
T 2vh0_B           38 KY-KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYT  111 (134)
T ss_dssp             --------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEE
T ss_pred             cC-CCcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcE
Confidence            45 37788988899999999999999999999999999997557 788764  4554  999999999998875443

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.61  E-value=8e-08  Score=45.54  Aligned_cols=37  Identities=57%  Similarity=1.264  Sum_probs=29.3

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      ++++|...||.+++.|.+..++|.|.|. .+|+|+.|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~-~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCP-FGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECC-TTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECC-CCCcCCccC
Confidence            5677877888888888888888888888 488887774

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.58  E-value=1.9e-07  Score=66.79  Aligned_cols=108  Identities=26%  Similarity=0.614  Sum_probs=73.0

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCC----------cCc-CCCCCCCCEEe
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID----------DCA-PNPCKNGARCV   71 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~----------~c~-~~~c~~~~~c~   71 (141)
                      .|.++|.|..|..   .|  .+|.+++.|..  +.+.|.|.+ +|.|..|+....          .|. ..+|..++.|.
T Consensus       188 ~C~~g~~G~~C~~---~C--~~C~~~G~C~~--~~g~C~C~~-G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~  259 (423)
T 2gy5_A          188 RCEAQKWGPECNH---LC--TACMNNGVCHE--DTGECICPP-GFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL  259 (423)
T ss_dssp             SSCTTEESTTSCE---EC--CCCCTTCEECT--TTCCEECCT-TEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEE
T ss_pred             cCCCCCCCCCCCC---CC--CCCCCCCEEEC--CCCcEeCCC-CccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEEC
Confidence            3777888888863   24  37889999976  457999995 999999963221          232 34566667774


Q ss_pred             eCCCCeeecCCCCCCCCCCCCCC------CCCcCC-CCCCCCEEeecCCCcceecCCCC
Q psy9687          72 DKVKDYLCECYPGYTGKTCADDI------KECESN-PCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        72 ~~~~~~~c~C~~g~~~~~c~~~~------~~c~~~-~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                        .+.+.|.|.+||.|..|+...      ..|... +|.+++.|....   .|.|...+
T Consensus       260 --~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~  313 (423)
T 2gy5_A          260 --PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGW  313 (423)
T ss_dssp             --TTTTEEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTC
T ss_pred             --CCCCeEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC---ceECCCCC
Confidence              456789999999998875311      123211 688899997553   37776443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.55  E-value=1.3e-08  Score=71.94  Aligned_cols=67  Identities=24%  Similarity=0.712  Sum_probs=14.3

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCcc----CCCCCcCCCcCc-CCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT----GPHCEINIDDCA-PNPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~----g~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ++++|...++.....|.+..++|.|.|.+ ||.    |+.| .++++|. ..+|..  .|.++.++|.|.|.+||.
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~-G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~   73 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHT-GYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYE   73 (386)
T ss_dssp             ----------------------------------------------------CCTT--EEC-----CCEECCTTEE
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCC-CceECCCCCcc-CccceeCCcCcccC--cCCCCCCCCeEEECCCce
Confidence            57888877755555898888999999995 997    8899 4899996 456764  599999999999999996

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.49  E-value=9.1e-08  Score=71.87  Aligned_cols=93  Identities=29%  Similarity=0.705  Sum_probs=69.9

Q ss_pred             cCCcccccccccCCCCC---CCCCC--CCEEeecCCceeEecCCCCccCCCCCc--CCCcCcCC---CCCCCCEEeeCCC
Q psy9687           6 SQNGLRLCETNIDDCES---GPCLN--GGLCKDLLNNYTCNCQQTGYTGPHCEI--NIDDCAPN---PCKNGARCVDKVK   75 (141)
Q Consensus         6 ~~~~g~~C~~~~~~c~~---~~c~~--~~~C~~~~g~~~c~c~~~g~~g~~c~~--~~~~c~~~---~c~~~~~c~~~~~   75 (141)
                      ++|.|..|+.+...|..   .+|.+  ++.|...    .|.|.+ ||.|..|+.  +...|...   +|..++.|..   
T Consensus       505 ~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~g----~C~C~~-G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~---  576 (687)
T 3k6s_B          505 KLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHP-GFEGSACQCERTTEGCLNPRRVECSGRGRCRC---  576 (687)
T ss_dssp             CCEESTTSCEESSCSCEETTEETSHHHHEEEETT----EEEECT-TCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS---
T ss_pred             CCccccccccccccccCCCCcCcCCCCCCeEECC----EEEcCC-CCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC---
Confidence            89999999766778874   35877  7888742    899995 999999962  24567643   6888888865   


Q ss_pred             CeeecCCCCCCCCCCCCCCCCCcCCCCCCCCEEe
Q psy9687          76 DYLCECYPGYTGKTCADDIKECESNPCQYGGTCL  109 (141)
Q Consensus        76 ~~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~~C~  109 (141)
                       ..|.|.+||.|..|+. ...|. ++|.+++.|+
T Consensus       577 -g~C~C~~Gy~G~~Ce~-c~~C~-~~C~~~g~Cv  607 (687)
T 3k6s_B          577 -NVCECHSGYQLPLCQE-CPGCP-SPCGKYISCA  607 (687)
T ss_dssp             -SCBCCSTTCCTTTTCC-CTTSC-CCCTTTHHHH
T ss_pred             -CEEECCCCCcCCCCCC-CCCCC-cccCCCCCCC
Confidence             3599999999999963 23563 5788877775

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.44  E-value=3.6e-07  Score=43.22  Aligned_cols=37  Identities=43%  Similarity=1.047  Sum_probs=32.3

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      ++++|...||.+++.|.+..++|.|.|++||.|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            4677888899999999999999999999999998774

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.42  E-value=5.9e-07  Score=45.47  Aligned_cols=40  Identities=45%  Similarity=1.071  Sum_probs=31.2

Q ss_pred             ccCCCCCC---CCCCCCEEe--ecCCceeEecCCCCccCCCCCcCC
Q psy9687          16 NIDDCESG---PCLNGGLCK--DLLNNYTCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        16 ~~~~c~~~---~c~~~~~C~--~~~g~~~c~c~~~g~~g~~c~~~~   56 (141)
                      ++++|.+.   ||.++++|.  +..++|.|.|. .||+|..|+..+
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~-~G~~G~~Ce~~~   46 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCV-IGYSGDRCQTRD   46 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECC-TTCCSSSSCCCS
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECC-CCCcCCcCCccC
Confidence            46777776   898888998  67788899998 489998886443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.28  E-value=7.5e-07  Score=63.20  Aligned_cols=65  Identities=26%  Similarity=0.546  Sum_probs=52.3

Q ss_pred             cCcCCCCCCCCEEeeCCCCeeecCCCCCC---CCCCCCCCCCCcC-CCCCCCCEEeecCCCcceecCCCCCC
Q psy9687          58 DCAPNPCKNGARCVDKVKDYLCECYPGYT---GKTCADDIKECES-NPCQYGGTCLEHSNMSLYQRSDLPAL  125 (141)
Q Consensus        58 ~c~~~~c~~~~~c~~~~~~~~c~C~~g~~---~~~c~~~~~~c~~-~~c~~~~~C~~~~~~~~~~~~~~~~~  125 (141)
                      +|...++.....|.++.++|.|.|++||.   +..| .++++|.. .+|..  .|.+..++|.|.|...+..
T Consensus         2 eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C-~dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~   70 (400)
T 3p5b_L            2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC-EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQL   70 (400)
T ss_dssp             CTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCE-EECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCC
T ss_pred             cccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcc-cCchhhhccCCCCC--ccCCCccceeeeccccccc
Confidence            56555666667999999999999999997   7788 49999974 46754  8999999999998765543

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.27  E-value=7.8e-08  Score=60.08  Aligned_cols=82  Identities=18%  Similarity=0.431  Sum_probs=53.2

Q ss_pred             eeccCCc----ccccccccCC--CCCCC--C--CCCCEEeecCC----ceeEecCCCCc---------------------
Q psy9687           3 VLWSQNG----LRLCETNIDD--CESGP--C--LNGGLCKDLLN----NYTCNCQQTGY---------------------   47 (141)
Q Consensus         3 ~~~~~~~----g~~C~~~~~~--c~~~~--c--~~~~~C~~~~g----~~~c~c~~~g~---------------------   47 (141)
                      .|.++|.    |+.|+ ++++  |...+  |  ..++.|.+..+    .|.|.|.+ ||                     
T Consensus        27 ~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~-G~~~~~~C~~C~~~~~~~y~C~C  104 (162)
T 1uzk_A           27 DCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-GKAWGTPCEMCPAVNTSEYKILC  104 (162)
T ss_dssp             ECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHHHTTT-CCEETTTTEECCCTTSHHHHHHC
T ss_pred             eCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCC-CCCcCCCcccCCCCCCCCceeEC
Confidence            3678887    88997 6766  75432  3  23567777655    56666652 44                     


Q ss_pred             ------cCC----CCCcCCCcCcC--CCCCCCCEEeeCCCCeeecCCCCCCCC
Q psy9687          48 ------TGP----HCEINIDDCAP--NPCKNGARCVDKVKDYLCECYPGYTGK   88 (141)
Q Consensus        48 ------~g~----~c~~~~~~c~~--~~c~~~~~c~~~~~~~~c~C~~g~~~~   88 (141)
                            .+.    .| .++++|..  .+|.+ +.|+++.++|.|.|++||.+.
T Consensus       105 ~~g~G~~~~~~~~~c-~dideC~~~~~~C~~-g~C~n~~gsy~C~C~~Gy~g~  155 (162)
T 1uzk_A          105 PGGEGFRPNPITVIL-EDIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYLN  155 (162)
T ss_dssp             TTCTTEEECTTTCCE-EECCHHHHCGGGGBT-SEEEECSSCEEEECCTTCCBC
T ss_pred             CCCCCcccCCCCCcc-CccccccCCCCCcCC-CEeEcCCCCEEeeCCCCccCC
Confidence                  332    23 47788864  35764 699999999999999999864

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.26  E-value=2.5e-07  Score=48.15  Aligned_cols=37  Identities=35%  Similarity=0.800  Sum_probs=31.0

Q ss_pred             ccCCCCCCCCCCC--CEEeecCCceeEecCCCCcc-CCCCC
Q psy9687          16 NIDDCESGPCLNG--GLCKDLLNNYTCNCQQTGYT-GPHCE   53 (141)
Q Consensus        16 ~~~~c~~~~c~~~--~~C~~~~g~~~c~c~~~g~~-g~~c~   53 (141)
                      ++++|...||.++  +.|.+..++|.|.|.+ ||+ |..|+
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~-Gy~~G~~C~   49 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQ-GYRISLDGT   49 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCT-TEEEEECSS
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCC-CCccCCCCC
Confidence            5678888889888  7899888889999984 898 88885

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.24  E-value=2.3e-06  Score=43.25  Aligned_cols=40  Identities=30%  Similarity=0.836  Sum_probs=32.8

Q ss_pred             CCcCcCC---CCCCCCEEe--eCCCCeeecCCCCCCCCCCCCCCC
Q psy9687          56 IDDCAPN---PCKNGARCV--DKVKDYLCECYPGYTGKTCADDIK   95 (141)
Q Consensus        56 ~~~c~~~---~c~~~~~c~--~~~~~~~c~C~~g~~~~~c~~~~~   95 (141)
                      +++|...   ||.+++.|.  +..+.|.|.|++||.|..|+.++.
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~   47 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL   47 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCSC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCCccCc
Confidence            4566655   899999998  778899999999999999875543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.22  E-value=1.9e-06  Score=42.05  Aligned_cols=36  Identities=44%  Similarity=1.014  Sum_probs=25.1

Q ss_pred             CCCCC---CCCCCCEEe--ecCCceeEecCCCCccCCCCCcC
Q psy9687          19 DCESG---PCLNGGLCK--DLLNNYTCNCQQTGYTGPHCEIN   55 (141)
Q Consensus        19 ~c~~~---~c~~~~~C~--~~~g~~~c~c~~~g~~g~~c~~~   55 (141)
                      +|.+.   ||.++++|.  +..++|+|.|. .||+|..|+.+
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~-~G~~G~~Ce~~   42 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCV-IGYSGDRCQTR   42 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECC-TTEETTTTCEE
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcC-CCCcCCcCCcc
Confidence            34444   788888886  45667888888 48888887543

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.18  E-value=9.3e-07  Score=46.41  Aligned_cols=42  Identities=36%  Similarity=0.722  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCEEee-----cCCceeEecCCCCccCCCCCcCCCcCc
Q psy9687          18 DDCESGPCLNGGLCKD-----LLNNYTCNCQQTGYTGPHCEINIDDCA   60 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~-----~~g~~~c~c~~~g~~g~~c~~~~~~c~   60 (141)
                      ++|...||.++++|.+     ..+.|.|.|. .||+|..|+.+++.+.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~-~Gf~G~~Ce~~i~~~~   53 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQ-PGFTGARCTENVPMKV   53 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECC-TTEESTTSCEECCSSC
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECC-CCCcCCccCcCcCccc
Confidence            4577788999899986     4567899998 4999999976666554

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.15  E-value=2.1e-06  Score=41.84  Aligned_cols=32  Identities=31%  Similarity=0.822  Sum_probs=27.4

Q ss_pred             CCCCCCEEe--eCCCCeeecCCCCCCCCCCCCCC
Q psy9687          63 PCKNGARCV--DKVKDYLCECYPGYTGKTCADDI   94 (141)
Q Consensus        63 ~c~~~~~c~--~~~~~~~c~C~~g~~~~~c~~~~   94 (141)
                      ||.+++.|.  +..+.|.|.|++||.|..|+.++
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCEEC
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCccc
Confidence            898999997  57788999999999999886554

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.15  E-value=5.5e-06  Score=59.27  Aligned_cols=85  Identities=28%  Similarity=0.663  Sum_probs=58.2

Q ss_pred             eeccCCcccccccccC----------CCC-CCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC------CcCcC-CCC
Q psy9687           3 VLWSQNGLRLCETNID----------DCE-SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI------DDCAP-NPC   64 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~----------~c~-~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~------~~c~~-~~c   64 (141)
                      .|.++|.|..|+.+.+          +|. ..+|.+++.|.  .+.+.|.|.+ +|.|..|+..-      ..|.. -+|
T Consensus       219 ~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~--~~~~~C~C~~-G~~G~~C~~~C~~G~~G~~C~~~C~C  295 (423)
T 2gy5_A          219 ICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCL--PDPYGCSCAT-GWKGLQCNEACHPGFYGPDCKLRCSC  295 (423)
T ss_dssp             ECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEE--TTTTEEECCB-TCBSGGGCBCCCTTBCSBTTCCBCCC
T ss_pred             eCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEEC--CCCCeEEeCC-CcccccccCccCCCCcCCcccccccC
Confidence            4788999999974321          343 24577777784  4678999994 99998885311      11221 157


Q ss_pred             CCCCEEeeCCCCeeecCCCCCCCCCCCCC
Q psy9687          65 KNGARCVDKVKDYLCECYPGYTGKTCADD   93 (141)
Q Consensus        65 ~~~~~c~~~~~~~~c~C~~g~~~~~c~~~   93 (141)
                      .+++.|.+..   .|.|++||.|..|+..
T Consensus       296 ~ngg~C~~~~---~C~C~~G~~G~~Ce~~  321 (423)
T 2gy5_A          296 NNGEMCDRFQ---GCLCSPGWQGLQCERE  321 (423)
T ss_dssp             TTCCEEETTT---EEECCTTCBSTTSCBC
T ss_pred             CCCCEecCCC---ceECCCCCcCCCCccC
Confidence            7788897654   3999999999998644

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.13  E-value=3e-07  Score=66.46  Aligned_cols=75  Identities=29%  Similarity=0.755  Sum_probs=32.6

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEEeeCCCCeeecCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARCVDKVKDYLCECY   82 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~   82 (141)
                      .|..+|.|..|+  +++|.. +|.+ +.|...   +.|.|.+ +|+|..|+  +..|.. +|.+++.|...   +.|.|.
T Consensus       380 ~C~~~~~g~~c~--~~~C~~-~C~n-G~C~~~---~~C~C~~-G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C~C~  445 (463)
T 2wg3_C          380 ECRATVQPAQTL--TSECSR-LCRN-GYCTPT---GKCCCSP-GWEGDFCR--TAKCEP-ACRHGGVCVRP---NKCLCK  445 (463)
T ss_dssp             GGCCCCCCCCCC--CCHHHH-HCCS-EEECTT---SCEEECT-TEESTTSC--EECC-----------------------
T ss_pred             cCCCCCcCCCCc--cccccC-CCCC-CccCCC---CeECCCC-CcCCCcCC--cCcCCC-CCCCCCEECCC---CEEECC
Confidence            466777777774  455754 4776 688653   3789984 89998884  456765 78888888654   579999


Q ss_pred             CCCCCCCCC
Q psy9687          83 PGYTGKTCA   91 (141)
Q Consensus        83 ~g~~~~~c~   91 (141)
                      +||.|..|+
T Consensus       446 ~G~~G~~C~  454 (463)
T 2wg3_C          446 KGYLGPQCE  454 (463)
T ss_dssp             ---------
T ss_pred             CCcccCCCC
Confidence            999888775

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.10  E-value=1.2e-06  Score=45.90  Aligned_cols=43  Identities=30%  Similarity=0.770  Sum_probs=35.5

Q ss_pred             CcCcCCCCCCCCEEee-----CCCCeeecCCCCCCCCCCCCCCCCCcC
Q psy9687          57 DDCAPNPCKNGARCVD-----KVKDYLCECYPGYTGKTCADDIKECES   99 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~-----~~~~~~c~C~~g~~~~~c~~~~~~c~~   99 (141)
                      ++|...||.+++.|++     ..+.|.|.|++||.|..|+.+++.+..
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~~   54 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ   54 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCT
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCcccc
Confidence            4566778999999986     567899999999999999877777644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=6.9e-07  Score=63.06  Aligned_cols=66  Identities=23%  Similarity=0.478  Sum_probs=12.1

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCC----CCCCCCCCCCCc-CCCCCCCCEEeecCCCcceecCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYT----GKTCADDIKECE-SNPCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~----~~~c~~~~~~c~-~~~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                      ++++|...++.....|.+..++|.|.|++||.    +..| .++++|. ..+|..  .|.+..++|.|.|...+
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~   72 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGY   72 (386)
T ss_dssp             ---------------------------------------------------CCTT--EEC-----CCEECCTTE
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCcc-CccceeCCcCcccC--cCCCCCCCCeEEECCCc
Confidence            45677766655555888888889999999997    7788 6999996 457865  49999999999987554

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.07  E-value=2.2e-06  Score=55.90  Aligned_cols=80  Identities=26%  Similarity=0.547  Sum_probs=58.5

Q ss_pred             eeccCCcccccccccC---------CCC----CCCCCCCCEEeecCCceeEecCCCC------ccCCCCCcCCCcCcCC-
Q psy9687           3 VLWSQNGLRLCETNID---------DCE----SGPCLNGGLCKDLLNNYTCNCQQTG------YTGPHCEINIDDCAPN-   62 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~---------~c~----~~~c~~~~~C~~~~g~~~c~c~~~g------~~g~~c~~~~~~c~~~-   62 (141)
                      .|.++|.|..|+-..+         .|.    ..+|..++.|..    ..|.|.+ +      |.|..|+.+...|... 
T Consensus       110 ~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~----g~C~C~~-gw~~~~~~~G~~Ce~~~~~C~~~~  184 (217)
T 2p28_B          110 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHT-SDVPGKLIYGQYCECDTINCERYN  184 (217)
T ss_dssp             EECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET----TEEEECC-CCSTTCCEESTTSCEESSCSCEET
T ss_pred             ECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC----CceECCC-CCCCcccEECCCcccCCccCCCCC
Confidence            4789999999974432         354    245777888874    2799995 7      7899997555667543 


Q ss_pred             --CCCCC--CEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          63 --PCKNG--ARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        63 --~c~~~--~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                        +|..+  +.|..  +  .|.|.+||.|..|+
T Consensus       185 g~~C~~~~~G~C~~--g--~C~C~~G~~G~~C~  213 (217)
T 2p28_B          185 GQVCGGPGRGLCFC--G--KCRCHPGFEGSACQ  213 (217)
T ss_dssp             TEETTCTTTEEEET--T--EEEECTTEESTTSC
T ss_pred             CCCCCCCCCcEEeC--C--eeECCCCCccCCcC
Confidence              57776  88874  2  69999999998875

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.03  E-value=1.3e-07  Score=58.07  Aligned_cols=48  Identities=38%  Similarity=0.883  Sum_probs=39.6

Q ss_pred             eeEecCCCCcc---CCCCCcCCCcCcC--CCCCCCCEEeeCCCCeeecCCCCCCCC
Q psy9687          38 YTCNCQQTGYT---GPHCEINIDDCAP--NPCKNGARCVDKVKDYLCECYPGYTGK   88 (141)
Q Consensus        38 ~~c~c~~~g~~---g~~c~~~~~~c~~--~~c~~~~~c~~~~~~~~c~C~~g~~~~   88 (141)
                      |.|.|.+ ||.   |..|+ ++++|..  .+|.+ +.|+++.++|.|.|++||.+.
T Consensus        88 ~~C~C~~-Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~g~  140 (147)
T 2w86_A           88 VDPICGK-GYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLD  140 (147)
T ss_dssp             CCTTTCT-TEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTEEEEECCTTCCBC
T ss_pred             CcccCCC-ccccCCCCccC-ccccccCCCCCCCC-CEEECCCCCEEeeCCCCCccC
Confidence            6778984 994   88996 8999974  44874 599999999999999999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=1.2e-05  Score=61.65  Aligned_cols=54  Identities=26%  Similarity=0.495  Sum_probs=40.4

Q ss_pred             CEEeeCCCCeeecCCCCCC---CCCCCCCCCCCcCCCCCCCCEEeecCCCcceecCCCC
Q psy9687          68 ARCVDKVKDYLCECYPGYT---GKTCADDIKECESNPCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        68 ~~c~~~~~~~~c~C~~g~~---~~~c~~~~~~c~~~~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                      ..|.++.++|.|.|++||.   +..|. ++++|.. +...+..|++..++|.|.|...+
T Consensus       324 ~~C~~~~~~y~C~C~~Gy~l~~g~~C~-dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy  380 (791)
T 3m0c_C          324 HVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQD-PDTCSQLCVNLEGGYKCQCEEGF  380 (791)
T ss_dssp             SEEEECSBSEEEECCTTCEEETTTEEE-CCCCCSS-SSSCTTTCCBCSSCBCCCCCSSE
T ss_pred             ccccCCCCCcccCCCCCCccCCCCccc-cCcccCC-CCCCCCeeecCCCCceeecCCCC
Confidence            4788888889999999984   66774 8888863 33345688888888888876544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.98  E-value=1e-05  Score=61.27  Aligned_cols=67  Identities=31%  Similarity=0.829  Sum_probs=50.6

Q ss_pred             cCCCCCCCCCCCCEEeecCCceeEecCCCCcc---CCCCCcCCCcCc-CCCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCA-PNPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~---g~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      +++|...+......|.++.++|.|.|.+ ||.   ++.|+ ++++|. ..+|.  ..|.++.++|.|.|++||.+
T Consensus       294 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~-G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~y~C~C~~G~~~  364 (699)
T 1n7d_A          294 TNECLDNNGGCSHVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQL  364 (699)
T ss_dssp             CCCTTSSTTTSCTTCCCCTTCCCCCCCS-SSCCCSSSCCC-CCCCCSSSSSCT--TTCCBCSSCBCCCCCSSCBC
T ss_pred             cccccccccCcCCCcccCCCCcEEeCCC-CeEcCCCCccc-CccccCCCCccc--cccccCCCCeeeeeeccccc
Confidence            4455433211124799999999999995 998   77896 899997 45564  47999999999999999964

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.98  E-value=7.5e-06  Score=40.05  Aligned_cols=36  Identities=47%  Similarity=1.074  Sum_probs=26.0

Q ss_pred             ccCCCCC---CCCCCCCEEeecC--CceeEecCCCCccCCCCC
Q psy9687          16 NIDDCES---GPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        16 ~~~~c~~---~~c~~~~~C~~~~--g~~~c~c~~~g~~g~~c~   53 (141)
                      ++++|..   .||.+ +.|....  +.|.|.|.+ ||+|..|+
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~-GytG~~Ce   42 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEV-GYTGVRCE   42 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECT-TCSSTTSC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCC-CCccCCCC
Confidence            4566766   77887 6887643  568888884 88888885

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.97  E-value=1.3e-06  Score=45.41  Aligned_cols=37  Identities=27%  Similarity=0.764  Sum_probs=32.8

Q ss_pred             CCCcCcCCCCCCC--CEEeeCCCCeeecCCCCCC-CCCCC
Q psy9687          55 NIDDCAPNPCKNG--ARCVDKVKDYLCECYPGYT-GKTCA   91 (141)
Q Consensus        55 ~~~~c~~~~c~~~--~~c~~~~~~~~c~C~~g~~-~~~c~   91 (141)
                      .+++|...||.++  +.|.+..++|.|.|++||. |..|+
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence            5678888899988  7999999999999999999 98874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.93  E-value=1e-05  Score=62.16  Aligned_cols=55  Identities=36%  Similarity=0.979  Sum_probs=45.6

Q ss_pred             CEEeecCCceeEecCCCCcc---CCCCCcCCCcCc-CCCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          29 GLCKDLLNNYTCNCQQTGYT---GPHCEINIDDCA-PNPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        29 ~~C~~~~g~~~c~c~~~g~~---g~~c~~~~~~c~-~~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      ..|.++.++|.|.|.+ ||.   |+.|. ++++|. ..+|  ...|.++.++|.|.|++||..
T Consensus       324 ~~C~~~~~~y~C~C~~-Gy~l~~g~~C~-dideC~~~~~C--~~~C~n~~gsy~C~C~~Gy~l  382 (791)
T 3m0c_C          324 HVCNDLKIGYECLCPD-GFQLVAQRRCE-DIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQL  382 (791)
T ss_dssp             SEEEECSBSEEEECCT-TCEEETTTEEE-CCCCCSSSSSC--TTTCCBCSSCBCCCCCSSEEC
T ss_pred             ccccCCCCCcccCCCC-CCccCCCCccc-cCcccCCCCCC--CCeeecCCCCceeecCCCCEe
Confidence            3899999999999995 995   78885 899996 3334  458999999999999999953

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.88  E-value=6.4e-05  Score=57.00  Aligned_cols=67  Identities=24%  Similarity=0.510  Sum_probs=49.4

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCC---CCCCCCCCCCCcC-CCCCCCCEEeecCCCcceecCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYT---GKTCADDIKECES-NPCQYGGTCLEHSNMSLYQRSDLPA  124 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~---~~~c~~~~~~c~~-~~c~~~~~C~~~~~~~~~~~~~~~~  124 (141)
                      ++++|..........|.++.++|.|.|++||.   +..|. ++++|.. .+|.  ..|++..++|.|.|...+.
T Consensus       293 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~y~C~C~~G~~  363 (699)
T 1n7d_A          293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ  363 (699)
T ss_dssp             CCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCC-CCCCCSSSSSCT--TTCCBCSSCBCCCCCSSCB
T ss_pred             ccccccccccCcCCCcccCCCCcEEeCCCCeEcCCCCccc-CccccCCCCccc--cccccCCCCeeeeeecccc
Confidence            44556533222235788999999999999997   66784 8999973 4674  5899999999998875544

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.79  E-value=1.8e-05  Score=38.67  Aligned_cols=36  Identities=33%  Similarity=0.856  Sum_probs=28.2

Q ss_pred             CCcCcC---CCCCCCCEEeeCC--CCeeecCCCCCCCCCCCC
Q psy9687          56 IDDCAP---NPCKNGARCVDKV--KDYLCECYPGYTGKTCAD   92 (141)
Q Consensus        56 ~~~c~~---~~c~~~~~c~~~~--~~~~c~C~~g~~~~~c~~   92 (141)
                      +++|..   .||.+ +.|....  +.|.|.|++||+|.+|+.
T Consensus         3 i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A            3 ITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             EECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             cccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            455655   78988 7998643  679999999999998853

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.48  E-value=5.8e-05  Score=55.42  Aligned_cols=13  Identities=38%  Similarity=1.224  Sum_probs=0.0

Q ss_pred             eecCCCCCCCCCC
Q psy9687          78 LCECYPGYTGKTC   90 (141)
Q Consensus        78 ~c~C~~g~~~~~c   90 (141)
                      .|.|++||.|..|
T Consensus       511 ~C~C~~G~~G~~C  523 (525)
T 4aqs_A          511 QCSCLPHMIGRQC  523 (525)
T ss_dssp             -------------
T ss_pred             eeECCCCCcCCCC
Confidence            3566666665555

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.47  E-value=7e-05  Score=48.84  Aligned_cols=85  Identities=27%  Similarity=0.587  Sum_probs=61.2

Q ss_pred             CCCCCCEEeecCCceeEecCCCCccCCCCCcCCC---------cCc----CCCCCCCCEEeeCCCCeeecCCCC------
Q psy9687          24 PCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID---------DCA----PNPCKNGARCVDKVKDYLCECYPG------   84 (141)
Q Consensus        24 ~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~~---------~c~----~~~c~~~~~c~~~~~~~~c~C~~g------   84 (141)
                      .|..++.|..    ..|.|.+ ||.|..|+....         .|.    ..+|..++.|..    ..|.|.++      
T Consensus        97 ~Csg~G~C~~----g~C~C~~-G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~----g~C~C~~gw~~~~~  167 (217)
T 2p28_B           97 LCHGKGFLEC----GICRCDT-GYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKL  167 (217)
T ss_dssp             TTTTSEEEET----TEEEECT-TEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET----TEEEECCCCSTTCC
T ss_pred             ccCCCceEEC----CEEECCC-CccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC----CceECCCCCCCccc
Confidence            3777778864    3899995 999999864322         354    345778888873    25999999      


Q ss_pred             CCCCCCCCCCCCCcCC---CCCCC--CEEeecCCCcceecCC
Q psy9687          85 YTGKTCADDIKECESN---PCQYG--GTCLEHSNMSLYQRSD  121 (141)
Q Consensus        85 ~~~~~c~~~~~~c~~~---~c~~~--~~C~~~~~~~~~~~~~  121 (141)
                      |.|..|+.+...|...   +|..+  +.|..    ..|.|..
T Consensus       168 ~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~  205 (217)
T 2p28_B          168 IYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHP  205 (217)
T ss_dssp             EESTTSCEESSCSCEETTEETTCTTTEEEET----TEEEECT
T ss_pred             EECCCcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCC
Confidence            6899997666778664   68887  99974    2677754

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.43  E-value=0.0001  Score=37.07  Aligned_cols=33  Identities=42%  Similarity=1.143  Sum_probs=26.0

Q ss_pred             CCCCCCCCEEe--ecCCceeEecCCCCccCCCCCcC
Q psy9687          22 SGPCLNGGLCK--DLLNNYTCNCQQTGYTGPHCEIN   55 (141)
Q Consensus        22 ~~~c~~~~~C~--~~~g~~~c~c~~~g~~g~~c~~~   55 (141)
                      ..||.++++|.  ...+.|.|.|.+ ||+|..|+..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~-GytG~~Ce~~   45 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVV-GYIGERCQYR   45 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECT-TEESTTSCEE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCC-CCcCCCCCcC
Confidence            46788889997  556778999994 9999999643

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.24  E-value=0.00013  Score=36.74  Aligned_cols=33  Identities=27%  Similarity=0.820  Sum_probs=27.5

Q ss_pred             CCCCCCCCEEe--eCCCCeeecCCCCCCCCCCCCC
Q psy9687          61 PNPCKNGARCV--DKVKDYLCECYPGYTGKTCADD   93 (141)
Q Consensus        61 ~~~c~~~~~c~--~~~~~~~c~C~~g~~~~~c~~~   93 (141)
                      ..||.+++.|.  +..+.|.|.|++||.|..|+..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~   45 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   45 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence            46788889997  5677899999999999998644

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.23  E-value=0.00013  Score=45.14  Aligned_cols=40  Identities=28%  Similarity=0.994  Sum_probs=30.2

Q ss_pred             CcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCCCcC
Q psy9687          59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECES   99 (141)
Q Consensus        59 c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~c~~   99 (141)
                      |...+|..++.|.+..+.|.|.|++||.|..|+ .+++|..
T Consensus       122 c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~Ce-~~~~c~~  161 (162)
T 1g1s_A          122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE-YVRDDDD  161 (162)
T ss_dssp             CCTTGGGGSEEEEECSSSEEEEECTTEESTTSC-EECC---
T ss_pred             CcCCCCCCCCEEecCCCCceEeCCCCCcCcccc-cCcccCC
Confidence            445677778899999899999999999999995 5567754

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.95  E-value=0.00063  Score=50.29  Aligned_cols=38  Identities=39%  Similarity=1.093  Sum_probs=33.7

Q ss_pred             cCCCCCCCCCCCCEEee-cCCceeEecC-CCCccCCCCCcC
Q psy9687          17 IDDCESGPCLNGGLCKD-LLNNYTCNCQ-QTGYTGPHCEIN   55 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~~-~~g~~~c~c~-~~g~~g~~c~~~   55 (141)
                      +++|.++||.+++.|.+ ..+.|.|.|. . ||+|..|+..
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~-G~~G~~Ce~~   41 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRT-GYSGPNCTIP   41 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTS-SEETTTTCEE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCC-CcCCCCCCCC
Confidence            46788999999999999 8889999999 6 9999999753

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.94  E-value=0.00029  Score=43.57  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=11.9

Q ss_pred             CcCCCCCCCCEEeecCCCcceecC
Q psy9687          97 CESNPCQYGGTCLEHSNMSLYQRS  120 (141)
Q Consensus        97 c~~~~c~~~~~C~~~~~~~~~~~~  120 (141)
                      |...+|.+++.|.+..+.+.|.|.
T Consensus       122 c~~~~C~~~g~C~~~~~~~~c~C~  145 (162)
T 1g1s_A          122 CQDMSCSKQGECLETIGNYTCSCY  145 (162)
T ss_dssp             CCTTGGGGSEEEEECSSSEEEEEC
T ss_pred             CcCCCCCCCCEEecCCCCceEeCC
Confidence            333445555555555555555443

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.88  E-value=0.00078  Score=33.59  Aligned_cols=30  Identities=40%  Similarity=0.888  Sum_probs=23.3

Q ss_pred             CCCCCCCEEee----cCCceeEecCCCCccCCCCC
Q psy9687          23 GPCLNGGLCKD----LLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        23 ~~c~~~~~C~~----~~g~~~c~c~~~g~~g~~c~   53 (141)
                      .||.++++|..    ..+.|.|.|.+ +|+|..|+
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~-Gf~G~~Ce   47 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAI-GFMGQRCE   47 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCT-TEESTTSC
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCC-CCcCCCCc
Confidence            47888889986    24568899984 89998886

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.81  E-value=0.00087  Score=33.83  Aligned_cols=28  Identities=32%  Similarity=0.827  Sum_probs=19.3

Q ss_pred             EEeecCCceeEecCCCCcc----CCCCCcCCCcC
Q psy9687          30 LCKDLLNNYTCNCQQTGYT----GPHCEINIDDC   59 (141)
Q Consensus        30 ~C~~~~g~~~c~c~~~g~~----g~~c~~~~~~c   59 (141)
                      .|.++.|+|.|.|.+ ||.    ++.|. ++++|
T Consensus        14 ~C~nt~Gsy~C~C~~-Gy~L~~d~~~C~-didec   45 (55)
T 2jkh_L           14 FCHEEQNSVVCSCAR-GYTLADNGKACI-PTGPY   45 (55)
T ss_dssp             EEEEETTEEEEECCT-TEEECTTSSCEE-ESSSS
T ss_pred             EeEcCCCCeEEeCCC-CCEECCCCCeec-cCccc
Confidence            788888888888884 875    44553 55544

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.80  E-value=0.0014  Score=32.61  Aligned_cols=31  Identities=35%  Similarity=1.014  Sum_probs=22.0

Q ss_pred             ccCCCCC----------CCCCCCCEEeecCCceeEecCCCCccC
Q psy9687          16 NIDDCES----------GPCLNGGLCKDLLNNYTCNCQQTGYTG   49 (141)
Q Consensus        16 ~~~~c~~----------~~c~~~~~C~~~~g~~~c~c~~~g~~g   49 (141)
                      ++++|..          .+|.  +.|.++.|+|.|.|.+ ||.+
T Consensus         3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~-Gy~~   43 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRP-GYEL   43 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECST-TCEE
T ss_pred             ccccccCcccccccccCCCCC--CEeECCCCCeEEECCC-CCeE
Confidence            5667754          3565  3888888888888884 8763

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.78  E-value=0.00059  Score=34.46  Aligned_cols=30  Identities=30%  Similarity=0.686  Sum_probs=23.1

Q ss_pred             CEEeeCCCCeeecCCCCCC----CCCCCCCCCCCc
Q psy9687          68 ARCVDKVKDYLCECYPGYT----GKTCADDIKECE   98 (141)
Q Consensus        68 ~~c~~~~~~~~c~C~~g~~----~~~c~~~~~~c~   98 (141)
                      ..|.++.++|.|.|++||.    +..| .++++|.
T Consensus        13 ~~C~nt~Gsy~C~C~~Gy~L~~d~~~C-~didec~   46 (55)
T 2jkh_L           13 QFCHEEQNSVVCSCARGYTLADNGKAC-IPTGPYP   46 (55)
T ss_dssp             SEEEEETTEEEEECCTTEEECTTSSCE-EESSSSC
T ss_pred             cEeEcCCCCeEEeCCCCCEECCCCCee-ccCcccc
Confidence            4899999999999999995    3445 3666653

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.77  E-value=0.0013  Score=48.93  Aligned_cols=37  Identities=35%  Similarity=0.972  Sum_probs=32.1

Q ss_pred             cCCCCCCCCCCCCEEee-cCCceeEecC-CCCccCCCCCc
Q psy9687          17 IDDCESGPCLNGGLCKD-LLNNYTCNCQ-QTGYTGPHCEI   54 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~~-~~g~~~c~c~-~~g~~g~~c~~   54 (141)
                      +++|.++||.+++.|.. ..+.|.|.|. + ||+|..|+.
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~-G~~G~~Ce~   39 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT-GFYGENCTT   39 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTS-SEETTTTCE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCC-CccCCCCCC
Confidence            46799999999999995 4578999998 6 999999974

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.73  E-value=0.00072  Score=33.72  Aligned_cols=30  Identities=37%  Similarity=0.863  Sum_probs=24.4

Q ss_pred             CCCCCCCEEee----CCCCeeecCCCCCCCCCCC
Q psy9687          62 NPCKNGARCVD----KVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        62 ~~c~~~~~c~~----~~~~~~c~C~~g~~~~~c~   91 (141)
                      .||.+++.|..    ..+.|.|.|++||.|..|+
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence            46778889975    3457899999999999885

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.66  E-value=0.0014  Score=34.73  Aligned_cols=40  Identities=25%  Similarity=0.672  Sum_probs=26.9

Q ss_pred             ccCCCCCCC--CCCCCEEeecCC-ceeEecCCCCcc----CCCCCcCCCcC
Q psy9687          16 NIDDCESGP--CLNGGLCKDLLN-NYTCNCQQTGYT----GPHCEINIDDC   59 (141)
Q Consensus        16 ~~~~c~~~~--c~~~~~C~~~~g-~~~c~c~~~g~~----g~~c~~~~~~c   59 (141)
                      ++++|....  |.+  .|.++.+ +|.|.|.. ||.    ++.|. ++++|
T Consensus         4 d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~-Gy~L~~D~~tC~-d~dec   50 (69)
T 1kli_L            4 DQLICVNENGGCEQ--YCSDHTGTKRSCRCHE-GYSLLADGVSCT-PTVEY   50 (69)
T ss_dssp             CCCCTTSGGGGCSS--EEEEETTTEEEEECCT-TEEECTTSSCEE-ECSSS
T ss_pred             ccccccCCCCCcCC--EeEcCCCCCEEEeCCC-CCeECCCCCccc-Ccccc
Confidence            667776443  543  7888888 78999984 885    55663 55544

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.56  E-value=0.0064  Score=35.91  Aligned_cols=32  Identities=47%  Similarity=1.028  Sum_probs=25.6

Q ss_pred             CCCCCCEEeecC--Cce-eEecCCCCccCCCCCcCC
Q psy9687          24 PCLNGGLCKDLL--NNY-TCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        24 ~c~~~~~C~~~~--g~~-~c~c~~~g~~g~~c~~~~   56 (141)
                      ||.+++.|.+..  ..+ .|.|.+ +|+|..|+.++
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~-g~~G~~Ce~~~   36 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPK-KFGGQHCEIDK   36 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCT-TEESTTSCEES
T ss_pred             CCCCcCCcCCCcccCCCCCccCCC-CCCCccccccC
Confidence            688999998873  445 999995 99999997544

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.48  E-value=0.0008  Score=45.43  Aligned_cols=40  Identities=25%  Similarity=0.675  Sum_probs=30.1

Q ss_pred             ccCCCC--CCCCCCCCEEeecCCceeEecCCCCcc--CCCCCcCCC
Q psy9687          16 NIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYT--GPHCEINID   57 (141)
Q Consensus        16 ~~~~c~--~~~c~~~~~C~~~~g~~~c~c~~~g~~--g~~c~~~~~   57 (141)
                      ++|+|.  .++|..++.|.|+.|+|.|.|.+ ||.  |..|. +++
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~-Gy~GnG~~C~-d~d   47 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVA-NYTGNGRQCV-AEG   47 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECT-TEEECSSSEE-ETT
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCC-CCCCCCCcCC-CCC
Confidence            678886  46798889999999999999995 997  56774 443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.43  E-value=0.00062  Score=49.28  Aligned_cols=44  Identities=34%  Similarity=0.854  Sum_probs=13.2

Q ss_pred             eeccCCcccccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687           3 VLWSQNGLRLCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus         3 ~~~~~~~g~~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      .|.++|+|..|+  ++.|.+ +|.+++.|...   +.|.|.+ +|.|..|+
T Consensus       411 ~C~~G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C~C~~-G~~G~~C~  454 (463)
T 2wg3_C          411 CCSPGWEGDFCR--TAKCEP-ACRHGGVCVRP---NKCLCKK-GYLGPQCE  454 (463)
T ss_dssp             EECTTEESTTSC--EECC---------------------------------
T ss_pred             CCCCCcCCCcCC--cCcCCC-CCCCCCEECCC---CEEECCC-CcccCCCC
Confidence            588999999995  567877 89999999864   5999994 99999996

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.36  E-value=0.0034  Score=33.42  Aligned_cols=34  Identities=15%  Similarity=0.464  Sum_probs=26.4

Q ss_pred             ccCCCCC--CCCCCCCEEeecCCceeEecCCCCccC
Q psy9687          16 NIDDCES--GPCLNGGLCKDLLNNYTCNCQQTGYTG   49 (141)
Q Consensus        16 ~~~~c~~--~~c~~~~~C~~~~g~~~c~c~~~g~~g   49 (141)
                      ++++|..  .+|..++.|+|+.|+|.|.+...+|.+
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIN   37 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccc
Confidence            6788875  458877899999999999865446653

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.32  E-value=0.002  Score=34.10  Aligned_cols=42  Identities=24%  Similarity=0.488  Sum_probs=27.8

Q ss_pred             CCCcCcCCCCCCCCEEeeCCC-CeeecCCCCCC----CCCCCCCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVK-DYLCECYPGYT----GKTCADDIKEC   97 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~-~~~c~C~~g~~----~~~c~~~~~~c   97 (141)
                      ++++|....-.....|+++.+ +|.|.|++||.    +..| .++++|
T Consensus         4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC-~d~dec   50 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC-TPTVEY   50 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCE-EECSSS
T ss_pred             ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcc-cCcccc
Confidence            566775322223457999998 79999999995    3445 356555

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.31  E-value=0.0042  Score=30.79  Aligned_cols=24  Identities=38%  Similarity=0.966  Sum_probs=19.8

Q ss_pred             CCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          62 NPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        62 ~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      .+|.  ..|.++.++|.|.|++||.+
T Consensus        20 ~~C~--~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A           20 PQCQ--HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CTTS--SEEEEETTEEEEECSTTCEE
T ss_pred             CCCC--CEeECCCCCeEEECCCCCeE
Confidence            3464  48999999999999999964

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.26  E-value=0.0029  Score=32.27  Aligned_cols=30  Identities=40%  Similarity=0.925  Sum_probs=24.2

Q ss_pred             CCCCCCEEee----cCCceeEecCCCCccCCCCCc
Q psy9687          24 PCLNGGLCKD----LLNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        24 ~c~~~~~C~~----~~g~~~c~c~~~g~~g~~c~~   54 (141)
                      +|.+++.|..    ....|.|.|.+ ||.|.+|+.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~-Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAI-GFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECT-TEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCC-CCccCCCcc
Confidence            7999999983    33468899994 999999963

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.24  E-value=0.0017  Score=33.18  Aligned_cols=29  Identities=38%  Similarity=0.934  Sum_probs=23.9

Q ss_pred             CCCCCCEEee----CCCCeeecCCCCCCCCCCC
Q psy9687          63 PCKNGARCVD----KVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        63 ~c~~~~~c~~----~~~~~~c~C~~g~~~~~c~   91 (141)
                      +|.+++.|..    ..+.|.|.|++||.|.+|+
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCc
Confidence            6888899973    3456889999999999885

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.07  E-value=0.0037  Score=46.23  Aligned_cols=37  Identities=32%  Similarity=0.966  Sum_probs=32.8

Q ss_pred             CCcCcCCCCCCCCEEee-CCCCeeecCC-CCCCCCCCCC
Q psy9687          56 IDDCAPNPCKNGARCVD-KVKDYLCECY-PGYTGKTCAD   92 (141)
Q Consensus        56 ~~~c~~~~c~~~~~c~~-~~~~~~c~C~-~g~~~~~c~~   92 (141)
                      +++|...||.+++.|.+ ..++|.|.|. +||.|..|+.
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence            36788899999999999 8889999999 9999998864

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.00  E-value=0.0015  Score=44.14  Aligned_cols=41  Identities=29%  Similarity=0.730  Sum_probs=30.4

Q ss_pred             CCCcCc--CCCCCCCCEEeeCCCCeeecCCCCCC--CCCCCCCCCC
Q psy9687          55 NIDDCA--PNPCKNGARCVDKVKDYLCECYPGYT--GKTCADDIKE   96 (141)
Q Consensus        55 ~~~~c~--~~~c~~~~~c~~~~~~~~c~C~~g~~--~~~c~~~~~~   96 (141)
                      ++++|.  ..+|..++.|.++.++|.|.|.+||.  |..|. +++.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~-d~d~   48 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV-AEGS   48 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEE-ETTC
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCC-CCCC
Confidence            567886  45788889999999999999999997  55563 4444

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.89  E-value=0.0071  Score=32.14  Aligned_cols=33  Identities=21%  Similarity=0.700  Sum_probs=25.0

Q ss_pred             CCCcCcC--CCCCCCCEEeeCCCCeeec-CCCCCCC
Q psy9687          55 NIDDCAP--NPCKNGARCVDKVKDYLCE-CYPGYTG   87 (141)
Q Consensus        55 ~~~~c~~--~~c~~~~~c~~~~~~~~c~-C~~g~~~   87 (141)
                      ++++|..  .+|..++.|+++.++|+|. +..||.+
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIN   37 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccc
Confidence            5677763  4587778999999999997 4557753

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=95.80  E-value=0.0037  Score=38.26  Aligned_cols=35  Identities=31%  Similarity=1.040  Sum_probs=28.1

Q ss_pred             CcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCC
Q psy9687          59 CAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD   93 (141)
Q Consensus        59 c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~   93 (141)
                      |...+|..++.|.+....|.|.|.+||.|..|+.+
T Consensus       122 ~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             CCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCCCCEeecCCCCeeEECCCCccCcccccc
Confidence            34456777788988888999999999999988644

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=95.77  E-value=0.014  Score=41.37  Aligned_cols=43  Identities=30%  Similarity=0.879  Sum_probs=34.4

Q ss_pred             ccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCc
Q psy9687          12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        12 ~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~   54 (141)
                      .|....+.|...||.+++.|......|.|.|...+|.|+.|+.
T Consensus       180 gC~~~~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~  222 (410)
T 3asi_A          180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCND  222 (410)
T ss_dssp             SCCCCSSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCE
T ss_pred             CCCCCCCCcccccCCCCCEecCCCCCceEeccCCcccCCCCCC
Confidence            4543456788899999999999888999999833899998863

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=95.73  E-value=0.0068  Score=45.11  Aligned_cols=35  Identities=34%  Similarity=1.102  Sum_probs=30.6

Q ss_pred             CcCcCCCCCCCCEEee-CCCCeeecCC-CCCCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVD-KVKDYLCECY-PGYTGKTCA   91 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~-~~~~~~c~C~-~g~~~~~c~   91 (141)
                      ++|...||.+++.|.+ ..++|.|.|+ +||.|..|+
T Consensus         2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   38 (587)
T 3nt1_A            2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (587)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCC
Confidence            5688899999999985 4588999999 999999886

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=95.71  E-value=0.0083  Score=44.06  Aligned_cols=75  Identities=19%  Similarity=0.384  Sum_probs=25.4

Q ss_pred             CccCCCCCcCCCcCcCCCCCCCCEEeeC----CCCeeecCCCCCCCCCCCC----------CCCCCcCCCCCCCCEEeec
Q psy9687          46 GYTGPHCEINIDDCAPNPCKNGARCVDK----VKDYLCECYPGYTGKTCAD----------DIKECESNPCQYGGTCLEH  111 (141)
Q Consensus        46 g~~g~~c~~~~~~c~~~~c~~~~~c~~~----~~~~~c~C~~g~~~~~c~~----------~~~~c~~~~c~~~~~C~~~  111 (141)
                      ||.|..+. ....|..-+|...+.|.+.    .....|.|+++|.|..|+.          +++.|..-+|.+++.+...
T Consensus       426 Gy~G~~c~-~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~  504 (525)
T 4aqs_A          426 GFYDLSAE-DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNS  504 (525)
T ss_dssp             TEECCCTT-STTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC-----------------------------
T ss_pred             CCcCCCCC-CCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCc
Confidence            55555443 3334544445444443321    1234699999999988852          3456766677777666443


Q ss_pred             --CCCcceecCC
Q psy9687         112 --SNMSLYQRSD  121 (141)
Q Consensus       112 --~~~~~~~~~~  121 (141)
                        .....|.|+.
T Consensus       505 C~~~tG~C~C~~  516 (525)
T 4aqs_A          505 CSEDSGQCSCLP  516 (525)
T ss_dssp             ------------
T ss_pred             cCCCCCeeECCC
Confidence              1233566653

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=95.69  E-value=0.025  Score=33.31  Aligned_cols=37  Identities=30%  Similarity=0.766  Sum_probs=28.5

Q ss_pred             CCCCCCEEeeCC--CCe-eecCCCCCCCCCCCCCCC-CCcC
Q psy9687          63 PCKNGARCVDKV--KDY-LCECYPGYTGKTCADDIK-ECES   99 (141)
Q Consensus        63 ~c~~~~~c~~~~--~~~-~c~C~~g~~~~~c~~~~~-~c~~   99 (141)
                      ||.+++.|.+..  ..+ .|.|+++|.|..|+.+++ .|..
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~~~C~~   42 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYE   42 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESSCCSBC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCcCCCcc
Confidence            578888998763  455 899999999999976654 5543

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=95.43  E-value=0.0062  Score=30.11  Aligned_cols=28  Identities=25%  Similarity=0.672  Sum_probs=19.3

Q ss_pred             EEeeCCCCeeecCCCCCC----CCCCCCCCCCC
Q psy9687          69 RCVDKVKDYLCECYPGYT----GKTCADDIKEC   97 (141)
Q Consensus        69 ~c~~~~~~~~c~C~~g~~----~~~c~~~~~~c   97 (141)
                      .|+++.++|.|.|++||.    +..| .+++++
T Consensus        11 ~C~n~~gs~~C~C~~Gy~L~~d~~tC-~dide~   42 (51)
T 1kig_L           11 FCREERSEVRCSCAHGYVLGDDSKSC-VSTERF   42 (51)
T ss_dssp             CCCEETTEECCCCCTTEEECTTSSCE-EECSSS
T ss_pred             EeEcCCCCeEEeCCCCcEECCCCCcc-ccCCcc
Confidence            577888888888888884    3344 355554

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=95.43  E-value=0.054  Score=30.79  Aligned_cols=59  Identities=17%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             CCCCCCEEee-CCCCeeecCCCCCC--CCCCCCCCCC-CcC--CCCCCCCEEeecC-CCcceecCCC
Q psy9687          63 PCKNGARCVD-KVKDYLCECYPGYT--GKTCADDIKE-CES--NPCQYGGTCLEHS-NMSLYQRSDL  122 (141)
Q Consensus        63 ~c~~~~~c~~-~~~~~~c~C~~g~~--~~~c~~~~~~-c~~--~~c~~~~~C~~~~-~~~~~~~~~~  122 (141)
                      .|..++.|.. ..+...|+|..+|.  |..|..+ +. |..  +-|...+.|.... +..+|.|+..
T Consensus        17 ~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~   82 (105)
T 1n1i_A           17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKE   82 (105)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCST
T ss_pred             CCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCC
Confidence            3455555555 34445566666664  3334333 33 432  2366666665553 4555555433

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=95.41  E-value=0.012  Score=36.16  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=17.2

Q ss_pred             CcCCCCCCCCEEeecCCCcceecCCCC
Q psy9687          97 CESNPCQYGGTCLEHSNMSLYQRSDLP  123 (141)
Q Consensus        97 c~~~~c~~~~~C~~~~~~~~~~~~~~~  123 (141)
                      |...+|..++.|++..+.+.|.|...+
T Consensus       122 ~~~~~C~~~g~C~~~~~~~~c~C~~g~  148 (164)
T 3cfw_A          122 CQPWSCSGHGECVEIINNYTCNCDVGY  148 (164)
T ss_dssp             CCTTSSCSSEEEEEETTEEEEEECTTC
T ss_pred             CCCCcCCCCCeecccCCCceeeeCCCc
Confidence            334567777777777777777665443

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=95.38  E-value=0.0061  Score=43.53  Aligned_cols=41  Identities=37%  Similarity=0.852  Sum_probs=0.0

Q ss_pred             CCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCCCCcCCCCCCCCEEeecCC
Q psy9687          63 PCKNGARCVDKVKDYLCECYPGYTGKTCADDIKECESNPCQYGGTCLEHSN  113 (141)
Q Consensus        63 ~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~~c~~~~c~~~~~C~~~~~  113 (141)
                      +|.+++.|.+..   .|.|++||.|..|+       ...|.+++.|....|
T Consensus       372 ~C~ngg~C~~~~---~C~C~~G~~G~~Ce-------~c~C~~~g~C~~~~G  412 (426)
T 3zyj_B          372 HCQNGGTCHNNV---RCLCPAAYTGILCE-------KLRCEEAGSCGSDSG  412 (426)
T ss_dssp             ---------------------------------------------------
T ss_pred             cCCCCCCcCCCC---CCcCCCCCcCCCCc-------CCCCCCCCcccCCCC
Confidence            455666675544   68899999887663       224667777765443

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=95.35  E-value=0.035  Score=31.31  Aligned_cols=66  Identities=20%  Similarity=0.579  Sum_probs=39.0

Q ss_pred             CcCCCCCCCCEEeeC-CCCeeecCCCCCC--CCCCCCCC-CCCcCC--CCCCCCEEeecC-----CCcceecCCCCC
Q psy9687          59 CAPNPCKNGARCVDK-VKDYLCECYPGYT--GKTCADDI-KECESN--PCQYGGTCLEHS-----NMSLYQRSDLPA  124 (141)
Q Consensus        59 c~~~~c~~~~~c~~~-~~~~~c~C~~g~~--~~~c~~~~-~~c~~~--~c~~~~~C~~~~-----~~~~~~~~~~~~  124 (141)
                      |....|..++.|... .+...|+|.+||.  +..|..+. ..|...  -|...+.|....     +...|.|+...+
T Consensus         7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C            7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCSCCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             eccCCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            333445666777553 4556788888875  33443322 456543  488888887664     456677765433

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=95.24  E-value=0.079  Score=30.13  Aligned_cols=65  Identities=22%  Similarity=0.460  Sum_probs=47.7

Q ss_pred             CCCCCCCCCCEEee-cCCceeEecCCCCcc--CCCCCcCCCc-Cc--CCCCCCCCEEeeCC-CCeeecCCCCCC
Q psy9687          20 CESGPCLNGGLCKD-LLNNYTCNCQQTGYT--GPHCEINIDD-CA--PNPCKNGARCVDKV-KDYLCECYPGYT   86 (141)
Q Consensus        20 c~~~~c~~~~~C~~-~~g~~~c~c~~~g~~--g~~c~~~~~~-c~--~~~c~~~~~c~~~~-~~~~c~C~~g~~   86 (141)
                      |...-|..++.|+. ..|...|.|. .+|.  |..|... +. |.  ...|...+.|.... ....|.|.++|+
T Consensus        13 C~~t~Cp~NA~C~r~~~G~e~CrCl-~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           13 CIDTNVPENAACYRYLDGTEEWRCL-LGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEEC-TTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             ecCCCCCCCCCeEECCCCCEeEEEE-CCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            44445778889988 5788899999 5997  5567433 54 54  34488899998775 678899999874

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=94.96  E-value=0.0066  Score=37.10  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             CCcCCCCCCCCEEeecCCCcceecCCC
Q psy9687          96 ECESNPCQYGGTCLEHSNMSLYQRSDL  122 (141)
Q Consensus        96 ~c~~~~c~~~~~C~~~~~~~~~~~~~~  122 (141)
                      .|...+|.+.+.|.+..+.+.|.|...
T Consensus       121 ~~~~~pc~~~g~C~~~~~~~~c~C~~g  147 (157)
T 1g1t_A          121 ACTNTSCSGHGECVETINNYTCKCDPG  147 (157)
T ss_dssp             CCCTTGGGGSEEEEEETTEEEEEECTT
T ss_pred             CCCCCCCCCCCEeecCCCCeeEECCCC
Confidence            344567888888888877777777543

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=94.86  E-value=0.011  Score=29.12  Aligned_cols=28  Identities=21%  Similarity=0.771  Sum_probs=21.5

Q ss_pred             EEeecCCceeEecCCCCcc----CCCCCcCCCcC
Q psy9687          30 LCKDLLNNYTCNCQQTGYT----GPHCEINIDDC   59 (141)
Q Consensus        30 ~C~~~~g~~~c~c~~~g~~----g~~c~~~~~~c   59 (141)
                      .|.++.++|.|.|.+ ||.    ++.|. +++++
T Consensus        11 ~C~n~~gs~~C~C~~-Gy~L~~d~~tC~-dide~   42 (51)
T 1kig_L           11 FCREERSEVRCSCAH-GYVLGDDSKSCV-STERF   42 (51)
T ss_dssp             CCCEETTEECCCCCT-TEEECTTSSCEE-ECSSS
T ss_pred             EeEcCCCCeEEeCCC-CcEECCCCCccc-cCCcc
Confidence            689999999999994 985    55674 55543

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.84  E-value=0.018  Score=35.75  Aligned_cols=39  Identities=28%  Similarity=0.784  Sum_probs=22.3

Q ss_pred             CCcccccccccCCCCCCC-----CCCCCEEeecCCceeEecCCCCcc
Q psy9687           7 QNGLRLCETNIDDCESGP-----CLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus         7 ~~~g~~C~~~~~~c~~~~-----c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      +|.+..+..++++|...+     |.+  .|.+..++|.|.|.+ ||.
T Consensus       114 Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~-Gy~  157 (170)
T 1szb_A          114 GFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRA-GYV  157 (170)
T ss_dssp             EEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCT-TEE
T ss_pred             CceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCC-CcE
Confidence            444444444566665433     443  577777777777763 665

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=94.71  E-value=0.055  Score=30.52  Aligned_cols=64  Identities=27%  Similarity=0.606  Sum_probs=45.0

Q ss_pred             CCCCCCCCEEee-cCCceeEecCCCCcc--CCCCCcCC-CcCcC--CCCCCCCEEeeCC-----CCeeecCCCCCC
Q psy9687          22 SGPCLNGGLCKD-LLNNYTCNCQQTGYT--GPHCEINI-DDCAP--NPCKNGARCVDKV-----KDYLCECYPGYT   86 (141)
Q Consensus        22 ~~~c~~~~~C~~-~~g~~~c~c~~~g~~--g~~c~~~~-~~c~~--~~c~~~~~c~~~~-----~~~~c~C~~g~~   86 (141)
                      ...|..++.|++ ..+...|.|. .+|.  |..|.... ..|..  ..|..++.|....     +...|.|.+++.
T Consensus         9 ~~~C~~NA~C~r~~~g~e~C~C~-~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C            9 KKQCPQNSGCFRHLDEREECKCL-LNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             SCCCCTTEEEECCTTSCCEEEEC-TTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             cCCCCCCCCeEEcCCCCEEEEec-CCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            344677788987 4678899999 4997  44564222 45653  3488889997664     567899999874

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=94.60  E-value=0.1  Score=31.68  Aligned_cols=32  Identities=47%  Similarity=1.028  Sum_probs=25.1

Q ss_pred             CCCCCCEEeecC--Cce-eEecCCCCccCCCCCcCC
Q psy9687          24 PCLNGGLCKDLL--NNY-TCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        24 ~c~~~~~C~~~~--g~~-~c~c~~~g~~g~~c~~~~   56 (141)
                      ||.+++.|....  ..+ .|.|.+ +|.|..|+.+.
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~-g~~G~~Cei~~   48 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPK-KFGGQHCEIDK   48 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCT-TEESTTSCEES
T ss_pred             CCCCCCCcCCCccccCCccccCCC-CCCCCceeccc
Confidence            799999997752  344 899995 99999997544

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=94.54  E-value=0.017  Score=28.78  Aligned_cols=29  Identities=31%  Similarity=0.734  Sum_probs=19.1

Q ss_pred             CEEeeCCC-CeeecCCCCCC----CCCCCCCCCCC
Q psy9687          68 ARCVDKVK-DYLCECYPGYT----GKTCADDIKEC   97 (141)
Q Consensus        68 ~~c~~~~~-~~~c~C~~g~~----~~~c~~~~~~c   97 (141)
                      ..|+++.+ +|.|.|++||.    +..| .++++|
T Consensus        11 ~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC-~d~dec   44 (53)
T 2bz6_L           11 QYCSDHTGTKRSCRCHEGYSLLADGVSC-TPTVEY   44 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCE-EECSSS
T ss_pred             CEeEcCCCCCEEeeCCCCCEECCCCCcc-cCCccc
Confidence            36777777 58888888884    3344 355555

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=94.28  E-value=0.053  Score=43.93  Aligned_cols=45  Identities=29%  Similarity=0.800  Sum_probs=35.4

Q ss_pred             ccccccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC
Q psy9687          12 LCETNIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        12 ~C~~~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~   56 (141)
                      .|....+.|...||.+++.|......|.|.|...+|.|+.|..+.
T Consensus      1012 gC~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A         1012 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp             SSSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCC
T ss_pred             eeecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCC
Confidence            354445678889999999999888889999982389999996443

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=94.24  E-value=0.034  Score=27.58  Aligned_cols=28  Identities=29%  Similarity=0.832  Sum_probs=21.9

Q ss_pred             EEeecCC-ceeEecCCCCcc----CCCCCcCCCcC
Q psy9687          30 LCKDLLN-NYTCNCQQTGYT----GPHCEINIDDC   59 (141)
Q Consensus        30 ~C~~~~g-~~~c~c~~~g~~----g~~c~~~~~~c   59 (141)
                      .|.++.+ +|.|.|.+ ||.    ++.|. ++++|
T Consensus        12 ~C~n~~ggs~~C~C~~-Gy~L~~Dg~tC~-d~dec   44 (53)
T 2bz6_L           12 YCSDHTGTKRSCRCHE-GYSLLADGVSCT-PTVEY   44 (53)
T ss_dssp             EEEEETTTEEEEECCT-TEEECTTSSCEE-ECSSS
T ss_pred             EeEcCCCCCEEeeCCC-CCEECCCCCccc-CCccc
Confidence            7999998 79999995 986    56774 66655

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=93.14  E-value=0.069  Score=28.85  Aligned_cols=29  Identities=38%  Similarity=0.934  Sum_probs=13.9

Q ss_pred             CCCCCCCEEee--cCCceeEecCCCCccCCCCC
Q psy9687          23 GPCLNGGLCKD--LLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        23 ~~c~~~~~C~~--~~g~~~c~c~~~g~~g~~c~   53 (141)
                      ..|.++ .|..  ..+.+.|.|. .+|+|..|+
T Consensus        46 ~yClnG-~C~~i~~~~~~~C~C~-~GYtG~RCE   76 (79)
T 1xdt_R           46 DFCIHG-ECKYVKELRAPSCICH-PGYHGERCH   76 (79)
T ss_dssp             TCCSSE-EECCBGGGTBCCEEEC-TTEESTTCC
T ss_pred             CcCCCC-EeeeecCCCCeEEEcC-CCccccccc
Confidence            345554 5532  1234556665 366665553

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=93.13  E-value=0.11  Score=36.75  Aligned_cols=38  Identities=24%  Similarity=0.785  Sum_probs=32.2

Q ss_pred             CCcCcCCCCCCCCEEeeCCCCeeecCCC-CCCCCCCCCC
Q psy9687          56 IDDCAPNPCKNGARCVDKVKDYLCECYP-GYTGKTCADD   93 (141)
Q Consensus        56 ~~~c~~~~c~~~~~c~~~~~~~~c~C~~-g~~~~~c~~~   93 (141)
                      .+.|...||.+++.|......|.|.|+. +|.|+.|+.+
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~  223 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDP  223 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEE
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCCCCCC
Confidence            4567788999999999988899999996 9999988643

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=93.01  E-value=0.07  Score=26.15  Aligned_cols=28  Identities=32%  Similarity=0.738  Sum_probs=17.4

Q ss_pred             CCCCCCEEe--eCCCCeeecCCCCCCCCCCC
Q psy9687          63 PCKNGARCV--DKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        63 ~c~~~~~c~--~~~~~~~c~C~~g~~~~~c~   91 (141)
                      .|.+ +.|.  ...+.+.|.|+.||+|.+|+
T Consensus        15 yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 1iox_A           15 YCIK-GRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             SCTT-CCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             cccC-CEEEeEcCCCCeEEECCCCcccCCCC
Confidence            3444 4553  33445678888888887775

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=92.91  E-value=0.18  Score=31.12  Aligned_cols=29  Identities=34%  Similarity=0.925  Sum_probs=21.3

Q ss_pred             CCCCCCEEeecC--CceeE-ecCCCCccCCCCC
Q psy9687          24 PCLNGGLCKDLL--NNYTC-NCQQTGYTGPHCE   53 (141)
Q Consensus        24 ~c~~~~~C~~~~--g~~~c-~c~~~g~~g~~c~   53 (141)
                      ||.+++.|....  +.++| .|.. +|.|..|+
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~-g~~G~~Ce   33 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPT-GTAGKRCE   33 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCT-TEESTTSC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCC-CCcCCCCc
Confidence            366777887654  56788 6884 88888885

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=92.63  E-value=0.14  Score=25.08  Aligned_cols=28  Identities=32%  Similarity=0.768  Sum_probs=18.8

Q ss_pred             CCCCCCEEee--CCCCeeecCCCCCCCCCCC
Q psy9687          63 PCKNGARCVD--KVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        63 ~c~~~~~c~~--~~~~~~c~C~~g~~~~~c~   91 (141)
                      .|.++ .|..  ..+.+.|.|++||+|.+|+
T Consensus        15 yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           15 FCFHG-TCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             cccCC-EEeeccCCCCeEEECCCCCcccCCC
Confidence            35544 6653  3356778888888888885

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=92.16  E-value=0.16  Score=36.34  Aligned_cols=84  Identities=23%  Similarity=0.438  Sum_probs=27.5

Q ss_pred             CEEeecCCceeEecCCCCccCCCCCcCCCcCcCCCCCCCCEE-eeCCCCeeec-CCCCCCCCCCCCCCCCCcCCCCCCCC
Q psy9687          29 GLCKDLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKNGARC-VDKVKDYLCE-CYPGYTGKTCADDIKECESNPCQYGG  106 (141)
Q Consensus        29 ~~C~~~~g~~~c~c~~~g~~g~~c~~~~~~c~~~~c~~~~~c-~~~~~~~~c~-C~~g~~~~~c~~~~~~c~~~~c~~~~  106 (141)
                      ..|....+.+.|.|. .++.|..|+.-.......++..+..+ +.......|. |.-.+.+..|..+     ..+|.+++
T Consensus       304 s~C~~~~g~~~C~C~-~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~-----t~~C~ngg  377 (426)
T 3zyj_B          304 TVCVYDNSKLTCECE-HNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE-----LLHCQNGG  377 (426)
T ss_dssp             SCEEEETTEEEECCC-TTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC-----------------------
T ss_pred             hhcCCCCCCceeeCC-CCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccC-----cccCCCCC
Confidence            468777777899999 49999999631111112233322211 1112223353 3334445556322     24789999


Q ss_pred             EEeecCCCcceecCC
Q psy9687         107 TCLEHSNMSLYQRSD  121 (141)
Q Consensus       107 ~C~~~~~~~~~~~~~  121 (141)
                      +|....   .|.|..
T Consensus       378 ~C~~~~---~C~C~~  389 (426)
T 3zyj_B          378 TCHNNV---RCLCPA  389 (426)
T ss_dssp             ---------------
T ss_pred             CcCCCC---CCcCCC
Confidence            997644   565543

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=92.16  E-value=0.069  Score=28.87  Aligned_cols=30  Identities=33%  Similarity=0.933  Sum_probs=21.8

Q ss_pred             CCCCCCCCEEe--eCCCCeeecCCCCCCCCCCC
Q psy9687          61 PNPCKNGARCV--DKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        61 ~~~c~~~~~c~--~~~~~~~c~C~~g~~~~~c~   91 (141)
                      ...|.++ .|.  ...+.+.|.|.+||.|.+|+
T Consensus        45 ~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           45 KDFCIHG-ECKYVKELRAPSCICHPGYHGERCH   76 (79)
T ss_dssp             TTCCSSE-EECCBGGGTBCCEEECTTEESTTCC
T ss_pred             cCcCCCC-EeeeecCCCCeEEEcCCCccccccc
Confidence            3456664 784  33456789999999999885

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=92.01  E-value=0.15  Score=41.37  Aligned_cols=44  Identities=25%  Similarity=0.737  Sum_probs=35.2

Q ss_pred             CCcCCCcCcCCCCCCCCEEeeCCCCeeecCC-CCCCCCCCCCCCC
Q psy9687          52 CEINIDDCAPNPCKNGARCVDKVKDYLCECY-PGYTGKTCADDIK   95 (141)
Q Consensus        52 c~~~~~~c~~~~c~~~~~c~~~~~~~~c~C~-~g~~~~~c~~~~~   95 (141)
                      |....+.|...||.+++.|......|.|.|+ ++|.|+.|..+..
T Consensus      1013 C~~~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~~~~ 1057 (1245)
T 3qcw_A         1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057 (1245)
T ss_dssp             SSCCCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSCBCCC
T ss_pred             eecccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCccCCCc
Confidence            4323457888899999999988888999999 5999999975543

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=91.46  E-value=0.18  Score=24.68  Aligned_cols=27  Identities=26%  Similarity=0.883  Sum_probs=16.4

Q ss_pred             CCCCCEEe--eCCCCeeecCCCCCCCCCCC
Q psy9687          64 CKNGARCV--DKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        64 c~~~~~c~--~~~~~~~c~C~~g~~~~~c~   91 (141)
                      |.+ +.|.  ...+.+.|.|+.+|.|.+|+
T Consensus        20 C~n-G~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           20 CIH-GECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             CSS-SEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CCC-CEEEEecCCCCeeEECCCCccccccc
Confidence            443 3664  33445667777777777764

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=91.30  E-value=0.21  Score=31.60  Aligned_cols=27  Identities=37%  Similarity=0.999  Sum_probs=14.8

Q ss_pred             CCCCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          62 NPCKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        62 ~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      .+|.+++.|+. ++.  |.|++||.|..|+
T Consensus       153 ~~C~ngG~Cv~-P~~--C~C~~Gw~G~~C~  179 (188)
T 2ygo_A          153 GGCRNGGFCNE-RRI--CECPDGFHGPHCE  179 (188)
T ss_dssp             TCCCTTCEECT-TSC--EECCTTCBTTTTC
T ss_pred             CCCCCCCEeCC-CCc--ccCcCCCCCCCCc
Confidence            34556666643 332  6666666666654

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=91.27  E-value=0.11  Score=32.01  Aligned_cols=21  Identities=29%  Similarity=0.898  Sum_probs=13.8

Q ss_pred             EEeeCCCCeeecCCCCCCCCCCC
Q psy9687          69 RCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        69 ~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      .|....+  .|.|+++|.|..|+
T Consensus       125 ~Cd~~tG--~C~C~~g~~G~~Cd  145 (162)
T 1klo_A          125 SCNPVTG--QCQCLPHVSGRDCG  145 (162)
T ss_dssp             CCCTTTC--CCCBCTTEESTTCC
T ss_pred             CCCCCCC--EeECCCCCcCCCCC
Confidence            4543333  48888888887773

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=90.82  E-value=0.068  Score=33.12  Aligned_cols=39  Identities=28%  Similarity=0.858  Sum_probs=25.6

Q ss_pred             CccCCCCCcCCCcCcCCC-----CCCCCEEeeCCCCeeecCCCCCC
Q psy9687          46 GYTGPHCEINIDDCAPNP-----CKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        46 g~~g~~c~~~~~~c~~~~-----c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ||.+..+..++++|...+     |.  ..|.++.++|.|.|++||.
T Consensus       114 Gf~~~~~~~di~eC~~~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~  157 (170)
T 1szb_A          114 GFEAFYAAEDIDECQVAPGEAPTCD--HHCHNHLGGFYCSCRAGYV  157 (170)
T ss_dssp             EEEEEEEEEECCTTCCCTTSCCSSS--SEEEEETTEEEEECCTTEE
T ss_pred             CceeeeeccccCcccCCCCCCCccC--CccccCCCCEEEeCCCCcE
Confidence            444444334566776433     43  3788888889999999885

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=90.05  E-value=0.25  Score=29.95  Aligned_cols=37  Identities=30%  Similarity=0.782  Sum_probs=27.8

Q ss_pred             CCCCCCEEeeC--CCCe-eecCCCCCCCCCCCCCCC-CCcC
Q psy9687          63 PCKNGARCVDK--VKDY-LCECYPGYTGKTCADDIK-ECES   99 (141)
Q Consensus        63 ~c~~~~~c~~~--~~~~-~c~C~~g~~~~~c~~~~~-~c~~   99 (141)
                      +|.+++.|+..  ...+ .|.|++||.|..|+.+++ .|..
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~~~C~~   54 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYE   54 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESSCCEEC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCceeccccccCCC
Confidence            68899999765  2445 799999999999976654 4543

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=89.99  E-value=0.29  Score=30.99  Aligned_cols=18  Identities=33%  Similarity=0.654  Sum_probs=9.2

Q ss_pred             CCCCCEEeecCCCcceecCCC
Q psy9687         102 CQYGGTCLEHSNMSLYQRSDL  122 (141)
Q Consensus       102 c~~~~~C~~~~~~~~~~~~~~  122 (141)
                      |.+++.|..   ...|.|...
T Consensus       155 C~ngG~Cv~---P~~C~C~~G  172 (188)
T 2ygo_A          155 CRNGGFCNE---RRICECPDG  172 (188)
T ss_dssp             CCTTCEECT---TSCEECCTT
T ss_pred             CCCCCEeCC---CCcccCcCC
Confidence            566666653   234555433

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=85.73  E-value=0.51  Score=23.82  Aligned_cols=19  Identities=26%  Similarity=0.803  Sum_probs=16.4

Q ss_pred             CEEeeCC-CCeeecCCCCCC
Q psy9687          68 ARCVDKV-KDYLCECYPGYT   86 (141)
Q Consensus        68 ~~c~~~~-~~~~c~C~~g~~   86 (141)
                      ..|+++. ++|.|.|++||.
T Consensus        11 ~~C~n~~~gs~~C~C~~Gy~   30 (59)
T 2wph_E           11 QFCKNSADNKVVCSCTEGYR   30 (59)
T ss_dssp             SEEEECSTTCEEEECCTTEE
T ss_pred             CEeEeCCCCCEEeeCCCCcE
Confidence            4788888 599999999995

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=85.68  E-value=0.64  Score=28.15  Aligned_cols=18  Identities=33%  Similarity=0.914  Sum_probs=9.9

Q ss_pred             EEeeCCCCeeecCCCCCC
Q psy9687          69 RCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        69 ~c~~~~~~~~c~C~~g~~   86 (141)
                      .|.+..+.+.|.|.+||.
T Consensus       131 ~C~n~~g~~~C~C~~Gy~  148 (159)
T 1nzi_A          131 FCNNFIGGYFCSCPPEYF  148 (159)
T ss_dssp             EEEEETTEEEEECCTTCE
T ss_pred             cccCcCCCEEEecCCCcE
Confidence            455555555555555553

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=81.63  E-value=0.77  Score=30.74  Aligned_cols=29  Identities=34%  Similarity=0.933  Sum_probs=21.3

Q ss_pred             cCCCCCC---CCCCCCEEeecCCceeEecCCCCcc
Q psy9687          17 IDDCESG---PCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        17 ~~~c~~~---~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      .|+|...   .|.+  .|.++.++|+|.|.. ||.
T Consensus         2 ~~eC~~~~~~~C~~--~C~~~~~~~~C~C~~-G~~   33 (283)
T 3f1s_B            2 KNECHPERTDGCQH--FCLPGQESYTCSCAQ-GYR   33 (283)
T ss_dssp             -CCCCSSCSSSCSS--BCCCCTTSCCCBCCT-TEE
T ss_pred             CCccCCCCCCCCCC--EeeCCCCCeEecCCC-Ccc
Confidence            4677644   3544  799999999999984 885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	2e-10
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	7e-10
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-10
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-10
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-10
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	5e-09
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	2e-09
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	9e-09
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	3e-09
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	6e-09
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	6e-09
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	2e-05
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-08
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	1e-08
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	2e-08
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	4e-08
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	2e-08
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	9e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	9e-08
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	9e-08
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-07
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	3e-07
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	1e-06
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	4e-06
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	3e-06
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	9e-06
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	6e-06
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	1e-04
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	8e-05
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	1e-04
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	7e-04
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	0.003

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (121), Expect = 2e-10
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
          +++C S PC N   C D +  + C C   GY G HCE+N
Sbjct: 1  VNECVSNPCQNDATCLDQIGEFQCIC-MPGYEGVHCEVN 38

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 7e-10
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD 93
          +++C  NPC+N A C+D++ ++ C C PGY G  C  +
Sbjct: 1  VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN 38

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (121), Expect = 2e-10
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          ++ D C  NPC NG  C D +  Y C C  G+ GK C
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC 37

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 4e-10
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI 54
          + D CES PCLNGG CKD +N+Y C C   G+ G +CE+
Sbjct: 2  DGDQCESNPCLNGGSCKDDINSYECWC-PFGFEGKNCEL 39

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 4e-10
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
          D CE+ PC N G CKD L  YTC C   G+ G +CE+ 
Sbjct: 1  DQCETSPCQNQGKCKDGLGEYTCTC-LEGFEGKNCELF 37

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 5e-09
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D C  +PC+N  +C D + +Y C C  G+ GK C
Sbjct: 1  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNC 34

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 2e-09
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 15 TNIDDCESGPCLNGGLCK-----DLLNNYTCNCQQTGYTGPHCEINIDDCAPNPCKN 66
              + E   C+NGG C         + Y C CQ  G+TG  C  N+     N  K 
Sbjct: 4  VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQP-GFTGARCTENVPMKVQNQEKA 59

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 9e-09
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 54  INIDDCAPNPCKNGARC-----VDKVKDYLCECYPGYTGKTCADDIKECESNPCQ 103
           +   +     C NG  C     +     YLC+C PG+TG  C +++     N  +
Sbjct: 4   VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEK 58

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.4 bits (113), Expect = 3e-09
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
           D CA +PC+NG  C D+++ Y+C C P + G+ C
Sbjct: 2  GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC 36

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 46.6 bits (111), Expect = 6e-09
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
           D C S PC NGG CKD L +Y C C    + G +CE
Sbjct: 2  GDQCASSPCQNGGSCKDQLQSYICFC-LPAFEGRNCE 37

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 46.7 bits (111), Expect = 6e-09
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          ++ C   PC + G+C    L+ Y C+C +TGY+GP+C I
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 37.5 bits (87), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 56 IDDCAPNPCKNGARCVDK-VKDYLCECYP-GYTGKTC 90
          ++ C   PC++   CV   +  Y C+C   GY+G  C
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNC 38

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (109), Expect = 1e-08
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
          D+CA +PC +  RC+DK+ ++ CEC  G+TG  C
Sbjct: 1  DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC 34

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (108), Expect = 1e-08
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE 53
          D+C S PCL+ G C D +N + C C  TG+TG  C+
Sbjct: 1  DECASSPCLHNGRCLDKINEFQCEC-PTGFTGHLCQ 35

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 2e-08
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDI 94
            C    C     CV+ + +Y C+C PG++G  C   +
Sbjct: 2  AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 4e-08
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI 56
            C +  C   G C + +NNYTC C   G++G  CE  +
Sbjct: 2  AACTNTSCSGHGECVETINNYTCKC-DPGFSGLKCEQIV 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (107), Expect = 2e-08
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI 54
          + C S PC N G C     + Y C+C +TG+ G +C  
Sbjct: 2  NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 57 DDCAPNPCKNGARCVD-KVKDYLCEC-YPGYTGKTC 90
          + C  NPC+N   C+      Y C+C   G+ G+ C
Sbjct: 2  NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 9e-08
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC 90
            C    C     C++ + +Y C CYPG+ G  C
Sbjct: 2  ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 35

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 9e-08
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID 57
            C+   C   G C + + NYTC+C   G+ GP CE   D
Sbjct: 2  ASCQDMSCSKQGECLETIGNYTCSC-YPGFYGPECEYVRD 40

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (101), Expect = 2e-07
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 17 IDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEIN 55
          +D+C   + PC + G C + L ++ C C   GYTGP CEI+
Sbjct: 3  VDECSLGANPCEHAGKCINTLGSFECQC-LQGYTGPRCEID 42

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 3e-07
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 56 IDDCA--PNPCKNGARCVDKVKDYLCECYPGYTGKTCADD 93
          +D+C+   NPC++  +C++ +  + C+C  GYTG  C  D
Sbjct: 3  VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID 42

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 1e-06
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20 CESGPCLNGGLCKDLLNNYTCNCQ-QTGYTGPHCEINID 57
          C    C NGG C+  L      CQ   G+ G  CEI+  
Sbjct: 1  CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR 39

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 4e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 59 CAPNPCKNGARCVDKVK--DYLCECYPGYTGKTCADDIKE 96
          C+   C NG  C   +   D++C+C  G+ GK+C  D + 
Sbjct: 1  CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA 40

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (93), Expect = 3e-06
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 51 HCEIN--IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIK 95
           C +      CA   C +G  C+D +  + C+C  G+ G+ C  ++ 
Sbjct: 1  QCLVLPLEHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVS 46

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 9e-06
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINID 57
             C S  C +G  C D + +++C+C+  G+ G  C+  + 
Sbjct: 8  EHPCASLCCGHGT-CIDGIGSFSCDCRS-GWEGRFCQREVS 46

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 6e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 14 ETNIDDCESGPCLNGGLCKDLLNNYTCNCQ-QTGYTGPHCE 53
          ++       G CL+ G+C  +       C    GY G  C+
Sbjct: 1  DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 41

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 53 EINIDDCAPNPCKNGARC--VDKVKDYLCECYPGYTGKTC 90
          +          C +   C  ++ +  Y C C  GY G+ C
Sbjct: 1  DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 40

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 8e-05
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 13 CETNIDDCESGPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCEI 54
                    G CLNGG+C  +  L++YTCNC   GY+G  C+ 
Sbjct: 2  SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVI-GYSGDRCQT 44

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (82), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 52 CEINIDDCAPNPCKNGARC--VDKVKDYLCECYPGYTGKTC 90
                      C NG  C  ++ +  Y C C  GY+G  C
Sbjct: 2  SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 7e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYT--GKTCAD 92
          +++D+C         +C++    Y CEC  GY   G  C D
Sbjct: 3  VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVD 43

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.003
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCE 53
                 C+ G     +     +C C + GY G  CE
Sbjct: 9  PKQYKHYCIKGRCRFVVAEQTPSCVCDE-GYIGARCE 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.91
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.89
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.89
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.87
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.74
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.73
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.72
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.71
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.71
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.69
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.56
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.54
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.5
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.43
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.41
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.41
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.37
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.37
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.32
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.29
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.28
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.22
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.99
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.95
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.84
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.75
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.65
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.61
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.6
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.4
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.39
d1szba2	45	Mannose-binding protein associated serine protease	97.38
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.36
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.31
d1nt0a3	45	Mannose-binding protein associated serine protease	97.28
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.26
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.15
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.07
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.05
d1nt0a3	45	Mannose-binding protein associated serine protease	96.97
d1szba2	45	Mannose-binding protein associated serine protease	96.96
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.93
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	96.89
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.65
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.5
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.15
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	95.53
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	94.7
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	94.58
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	94.24
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	94.18
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	93.85
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.45
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	90.41
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	87.7
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	87.4
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	86.71
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	83.28

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.3e-09  Score=50.49  Aligned_cols=37  Identities=57%  Similarity=1.264  Sum_probs=31.5

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      ++|+|.++||.+++.|.+..+.|.|.|. .||.|++|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~-~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCP-FGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECC-TTCCSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECC-CCCCCCCCC
Confidence            6788888899999999888888999998 489888884

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.89  E-value=9e-10  Score=50.39  Aligned_cols=37  Identities=49%  Similarity=1.137  Sum_probs=30.0

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      |+|+|.++||.++++|....+.|.|.|. .+|+|+.|+
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~-~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCL-PAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECC-TTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECC-CCCcCCCCC
Confidence            4677888888888888888888888888 488888773

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-09  Score=51.40  Aligned_cols=37  Identities=46%  Similarity=1.265  Sum_probs=30.3

Q ss_pred             ccCCCC--CCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          16 NIDDCE--SGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        16 ~~~~c~--~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      |+++|.  ++||.++++|.++.++|.|.|.+ ||+|++|+
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~-G~~G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQ-GYTGPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCT-TEESTTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCC-CCcCCCCc
Confidence            677776  46788888999888889999984 88888885

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.7e-09  Score=50.01  Aligned_cols=36  Identities=42%  Similarity=1.126  Sum_probs=29.5

Q ss_pred             cCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      ||+|.+.||.+++.|....++|.|.|.+ ||.|+.|+
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~-G~~G~~Ce   36 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMP-GYEGVHCE   36 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCT-TEESSSSC
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCC-CCccCcCe
Confidence            4678888888888888888888888884 88888885

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.7e-09  Score=48.44  Aligned_cols=37  Identities=41%  Similarity=1.200  Sum_probs=33.4

Q ss_pred             CCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCC
Q psy9687          56 IDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCAD   92 (141)
Q Consensus        56 ~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~   92 (141)
                      |++|...||.+++.|++..++|.|.|++||.|..|+.
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSCE
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCee
Confidence            4678889999999999999999999999999998853

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.5e-09  Score=47.97  Aligned_cols=36  Identities=53%  Similarity=1.262  Sum_probs=29.7

Q ss_pred             CCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCc
Q psy9687          18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~   54 (141)
                      |+|.+.||.+++.|....+.|.|.|. .||+|+.|+.
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~-~G~~G~~Cei   36 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCL-EGFEGKNCEL   36 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECC-TTEETTTTCE
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECC-CCCCcCcCeE
Confidence            46788888888899888888889998 4888888863

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=45.90  Aligned_cols=35  Identities=49%  Similarity=1.259  Sum_probs=28.0

Q ss_pred             CCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      |+|.+.||.++++|++..+.|+|.|. .+|.|+.|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~-~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECP-TGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECC-TTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECC-CCCCCCCcC
Confidence            46778888888888888888888888 488888773

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.6e-09  Score=48.91  Aligned_cols=37  Identities=35%  Similarity=1.203  Sum_probs=32.8

Q ss_pred             CCCcCc--CCCCCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          55 NIDDCA--PNPCKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        55 ~~~~c~--~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      ++++|.  ..||.+++.|+++.++|.|.|++||.|+.|+
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence            567776  5789999999999999999999999998885

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.71  E-value=4.8e-09  Score=47.90  Aligned_cols=36  Identities=42%  Similarity=1.236  Sum_probs=32.3

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTC   90 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c   90 (141)
                      ++++|..+||.+++.|++..+.|.|.|++||.|..|
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   36 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC   36 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTS
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCC
Confidence            467888899999999999999999999999999877

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.5e-08  Score=46.79  Aligned_cols=37  Identities=43%  Similarity=1.047  Sum_probs=33.6

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      ++++|.+.||.+++.|++..++|.|.|++||.|+.|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            5678999999999999999999999999999998874

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.2e-08  Score=47.08  Aligned_cols=36  Identities=39%  Similarity=1.029  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCc
Q psy9687          18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~   54 (141)
                      +.|.++||.+++.|+...+.|+|.|. .+|.|+.|+.
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~-~g~~G~~Ce~   37 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCD-PGFSGLKCEQ   37 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEEC-TTEESTTSCE
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCC-CCCcCcCcCc
Confidence            45777888888888888888888888 4888888863

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.7e-08  Score=45.84  Aligned_cols=36  Identities=39%  Similarity=1.108  Sum_probs=32.0

Q ss_pred             CcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCAD   92 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~   92 (141)
                      ++|.+.||.+++.|++..+.|.|.|++||.|..|+.
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei   36 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL   36 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTCE
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCeE
Confidence            457788999999999999999999999999998853

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8e-08  Score=43.15  Aligned_cols=35  Identities=46%  Similarity=1.262  Sum_probs=30.4

Q ss_pred             CcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      ++|.+.||.+++.|++..++|.|.|+++|.|..|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            35778899999999999899999999999998773

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=9.1e-08  Score=45.97  Aligned_cols=39  Identities=28%  Similarity=0.787  Sum_probs=29.3

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCCcCC
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~~~~   56 (141)
                      ..++|.++||.+ +.|.+..++|+|.|.+ ||.|++|+.++
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~-G~~G~~Ce~~I   45 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRS-GWEGRFCQREV   45 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECT-TEESTTSCEEC
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCC-CCcCCCccccc
Confidence            356788888876 6788877888888884 88888886544

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.5e-08  Score=46.00  Aligned_cols=37  Identities=30%  Similarity=0.978  Sum_probs=32.2

Q ss_pred             CcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADD   93 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~   93 (141)
                      +.|.++||.+++.|++..+.|.|.|++||.|+.|+.+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCcc
Confidence            3577889999999999999999999999999988643

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.5e-07  Score=42.50  Aligned_cols=36  Identities=39%  Similarity=1.162  Sum_probs=24.6

Q ss_pred             CCCCCCCCCCEEeecC--CceeEecCCCCccCCCCCcCC
Q psy9687          20 CESGPCLNGGLCKDLL--NNYTCNCQQTGYTGPHCEINI   56 (141)
Q Consensus        20 c~~~~c~~~~~C~~~~--g~~~c~c~~~g~~g~~c~~~~   56 (141)
                      |.++||.++++|+...  ..|+|.|. .+|.|.+|+.++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~-~g~~G~~Ce~~~   38 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCP-EGFAGKSCEIDT   38 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECC-TTCBSSSCCBCS
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCC-CCCCCCCcCcCc
Confidence            4567777888887642  45778887 478888776544

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4e-07  Score=42.30  Aligned_cols=38  Identities=34%  Similarity=0.970  Sum_probs=31.1

Q ss_pred             CcCCCCCCCCEEeeC--CCCeeecCCCCCCCCCCCCCCCC
Q psy9687          59 CAPNPCKNGARCVDK--VKDYLCECYPGYTGKTCADDIKE   96 (141)
Q Consensus        59 c~~~~c~~~~~c~~~--~~~~~c~C~~g~~~~~c~~~~~~   96 (141)
                      |.++||.+++.|+..  .+.|.|.|++||.|..|+.++++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~~   40 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA   40 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSSC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcCC
Confidence            456789999999865  45799999999999999877643

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.2e-07  Score=43.86  Aligned_cols=35  Identities=40%  Similarity=1.082  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCCCEEeecCCceeEecCCCCccCCCCC
Q psy9687          18 DDCESGPCLNGGLCKDLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      +.|.++||.+++.|....+.|.|.|. .+|.|+.|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~-~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCY-PGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEEC-TTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCC-CCccCCCCC
Confidence            45777888888888888888888888 488888885

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=4.9e-07  Score=41.95  Aligned_cols=36  Identities=39%  Similarity=1.078  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCEEeec-CCceeEecCCCCccCCCCC
Q psy9687          18 DDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~-~g~~~c~c~~~g~~g~~c~   53 (141)
                      |+|.+.||.++++|+.. .+.|+|.|..++|.|+.|+
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            57888999999999865 5779999952489999885

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.29  E-value=3.9e-07  Score=42.54  Aligned_cols=37  Identities=41%  Similarity=1.188  Sum_probs=29.8

Q ss_pred             cCCCCCCCCCCCCEEeec-CCceeEecCCCCccCCCCC
Q psy9687          17 IDDCESGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~~~-~g~~~c~c~~~g~~g~~c~   53 (141)
                      +++|..+||.++++|+.. .+.|.|.|...||.|++|+
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            577888999999999864 5678999973379999885

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2e-07  Score=44.73  Aligned_cols=40  Identities=25%  Similarity=0.806  Sum_probs=34.0

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCADDIK   95 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~~~~~   95 (141)
                      ..+.|..+||.+ +.|.+..++|.|.|++||.|..|+.++.
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEECC
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcccccC
Confidence            346788899976 7899999999999999999999976653

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.6e-07  Score=43.38  Aligned_cols=32  Identities=28%  Similarity=0.788  Sum_probs=22.5

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCcc
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      |+|||...++...+.|.|+.|+|.|.|.+ ||.
T Consensus         4 DidEC~~~~~~~~~~C~Nt~Gsy~C~C~~-Gy~   35 (43)
T d1emoa1           4 DMDECKEPDVCKHGQCINTDGSYRCECPF-GYI   35 (43)
T ss_dssp             CCCSSSSTTSCSSSCCCCCSSCCCCCCCT-TEE
T ss_pred             ceeccCCcCCCCCCEeECCCCCeEeECCC-Ccc
Confidence            67777655555556777777777787773 775

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.4e-07  Score=42.79  Aligned_cols=35  Identities=31%  Similarity=1.084  Sum_probs=31.3

Q ss_pred             CcCcCCCCCCCCEEeeCCCCeeecCCCCCCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      +.|..+||.+++.|+...+.|.|.|++||.|..|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            35678899999999999999999999999999885

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2e-06  Score=40.23  Aligned_cols=33  Identities=27%  Similarity=0.760  Sum_probs=27.9

Q ss_pred             cCCCcCcCCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          54 INIDDCAPNPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        54 ~~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      .++++|...++..++.|+++.|+|.|.|++||.
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~   35 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI   35 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEE
T ss_pred             cceeccCCcCCCCCCEeECCCCCeEeECCCCcc
Confidence            478899766666678899999999999999986

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.5e-06  Score=43.39  Aligned_cols=42  Identities=36%  Similarity=0.738  Sum_probs=31.9

Q ss_pred             cCCCCCCCCCCCCEEe-----ecCCceeEecCCCCccCCCCCcCCCcC
Q psy9687          17 IDDCESGPCLNGGLCK-----DLLNNYTCNCQQTGYTGPHCEINIDDC   59 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~-----~~~g~~~c~c~~~g~~g~~c~~~~~~c   59 (141)
                      .++|..++|.+++.|.     ...+.|.|.|.+ +|.|..|+..+..+
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~-gy~G~~Ce~~~~~~   52 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQP-GFTGARCTENVPMK   52 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCT-TEESTTSCEECCSS
T ss_pred             CCCCcCCcCCCCCEEeecccccCCCCEEeECCC-CCCCCCcCCCCCcc
Confidence            4567788999999995     344678999994 99999997554433

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.95  E-value=2.9e-06  Score=39.45  Aligned_cols=36  Identities=33%  Similarity=0.998  Sum_probs=30.4

Q ss_pred             CCcCcCCCCCCCCEEeeC-CCCeeecCCC-CCCCCCCC
Q psy9687          56 IDDCAPNPCKNGARCVDK-VKDYLCECYP-GYTGKTCA   91 (141)
Q Consensus        56 ~~~c~~~~c~~~~~c~~~-~~~~~c~C~~-g~~~~~c~   91 (141)
                      ++.|..+||.+++.|+.. .+.|.|.|++ ||.|..|+
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            567888999999999864 5779999986 89998885

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=6.8e-06  Score=38.41  Aligned_cols=32  Identities=19%  Similarity=0.666  Sum_probs=17.8

Q ss_pred             ccCCCCCCCCCCCCEEeecCCceeEecCCCCcc
Q psy9687          16 NIDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        16 ~~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      +++||...+....+.|+|+.|+|.|.|.+ ||.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~-Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPP-DFE   33 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCT-TCE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCC-CCE
Confidence            45666543322335666666666666663 663

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.7e-06  Score=42.37  Aligned_cols=44  Identities=30%  Similarity=0.770  Sum_probs=34.2

Q ss_pred             CCcCcCCCCCCCCEEe-----eCCCCeeecCCCCCCCCCCCCCCCCCcC
Q psy9687          56 IDDCAPNPCKNGARCV-----DKVKDYLCECYPGYTGKTCADDIKECES   99 (141)
Q Consensus        56 ~~~c~~~~c~~~~~c~-----~~~~~~~c~C~~g~~~~~c~~~~~~c~~   99 (141)
                      .++|..++|.+++.|.     +..+.|.|.|++||.|.+|+..+..+..
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~~~   54 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ   54 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCT
T ss_pred             CCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCcccc
Confidence            3556678899999994     4557899999999999999866655443

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=8.1e-06  Score=38.14  Aligned_cols=33  Identities=21%  Similarity=0.711  Sum_probs=25.8

Q ss_pred             CCCcCcCCCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          55 NIDDCAPNPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        55 ~~~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      ++++|.......++.|+++.|+|.|.|++||..
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l   34 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFEL   34 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEE
Confidence            678886544335679999999999999999953

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2.9e-06  Score=39.71  Aligned_cols=31  Identities=39%  Similarity=1.133  Sum_probs=21.7

Q ss_pred             ccCCCCCCC--CCCCCEEeecCCceeEecCCCCcc
Q psy9687          16 NIDDCESGP--CLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        16 ~~~~c~~~~--c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      |+|||...+  |. .+.|+|+.|+|.|.|.+ ||.
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~-Gy~   34 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPT-GYY   34 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSCEEEECCT-TCC
T ss_pred             CcccccCCCCCcC-CCEEECCCCCeEeECCC-CCe
Confidence            567776433  53 35788888888888884 775

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=8.9e-06  Score=38.07  Aligned_cols=32  Identities=34%  Similarity=1.040  Sum_probs=20.6

Q ss_pred             ccCCCCCCC--CCCCCEEeecCCceeEecCCCCccC
Q psy9687          16 NIDDCESGP--CLNGGLCKDLLNNYTCNCQQTGYTG   49 (141)
Q Consensus        16 ~~~~c~~~~--c~~~~~C~~~~g~~~c~c~~~g~~g   49 (141)
                      |+|||...+  |. ++.|.|+.|+|.|.|.+ ||.+
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~-Gy~~   35 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGDFECKCDE-GYES   35 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTEEEECCCS-SEEE
T ss_pred             cccccCCCCCCCC-CCEeEcCCCCeEEeCCC-CCcc
Confidence            567776433  43 35677777777777774 7754

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.4e-05  Score=36.89  Aligned_cols=35  Identities=34%  Similarity=1.113  Sum_probs=29.0

Q ss_pred             CcCcCCCCCCCCEEeeC-CCCeeecCC-CCCCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDK-VKDYLCECY-PGYTGKTCA   91 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~-~~~~~c~C~-~g~~~~~c~   91 (141)
                      +.|...||.+++.|+.. .+.|.|.|+ ++|.|..|+
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            45778899999999864 577999997 599998885

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.5e-06  Score=37.84  Aligned_cols=31  Identities=39%  Similarity=1.134  Sum_probs=20.7

Q ss_pred             ccCCCCCCC--CCCCCEEeecCCceeEecCCCCcc
Q psy9687          16 NIDDCESGP--CLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        16 ~~~~c~~~~--c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      |+|||...+  |. ++.|.|+.|+|.|.|.+ ||.
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~-Gy~   33 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPP-GHQ   33 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCT-TSC
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCC-CCe
Confidence            356665433  53 45888888888888884 775

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3e-05  Score=37.85  Aligned_cols=33  Identities=30%  Similarity=0.845  Sum_probs=22.5

Q ss_pred             cccCCCCCCC--C------CCCCEEeecCCceeEecCCCCcc
Q psy9687          15 TNIDDCESGP--C------LNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        15 ~~~~~c~~~~--c------~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      +|+|||...+  |      .....|.|+.|+|.|.|.+ ||.
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~-Gy~   42 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRP-GYE   42 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECST-TCE
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCC-CCe
Confidence            3677776432  2      2234788889999999884 885

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=9.6e-06  Score=37.64  Aligned_cols=31  Identities=39%  Similarity=0.879  Sum_probs=23.8

Q ss_pred             CCcCcC--CCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          56 IDDCAP--NPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        56 ~~~c~~--~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      +++|..  ..|. ++.|+++.|+|+|.|++||..
T Consensus         2 idEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2           2 IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeE
Confidence            566653  3343 579999999999999999964

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.3e-05  Score=36.82  Aligned_cols=36  Identities=39%  Similarity=1.006  Sum_probs=27.9

Q ss_pred             CCCCCCCCCCCCEEeec--CCceeEecCCCCccCCCCCc
Q psy9687          18 DDCESGPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~--~g~~~c~c~~~g~~g~~c~~   54 (141)
                      ++|...+|.+++.|+..  ...|+|.|. .+|+|.+|+.
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~-~gy~G~~Ce~   42 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCV-VGYIGERCQY   42 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEEC-TTEESTTSCE
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCC-CCcccCCCCc
Confidence            45667789999999753  356899999 4999999963

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.8e-05  Score=36.99  Aligned_cols=33  Identities=33%  Similarity=0.885  Sum_probs=25.8

Q ss_pred             CCCcCcCC--CCCCCCEEeeCCCCeeecCCCCCCCC
Q psy9687          55 NIDDCAPN--PCKNGARCVDKVKDYLCECYPGYTGK   88 (141)
Q Consensus        55 ~~~~c~~~--~c~~~~~c~~~~~~~~c~C~~g~~~~   88 (141)
                      ++++|...  .|. ++.|.++.|+|.|.|++||.+.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             cccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            67888643  353 5689999999999999999753

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=7.5e-05  Score=36.31  Aligned_cols=36  Identities=47%  Similarity=1.152  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCCCEEeec--CCceeEecCCCCccCCCCCc
Q psy9687          18 DDCESGPCLNGGLCKDL--LNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        18 ~~c~~~~c~~~~~C~~~--~g~~~c~c~~~g~~g~~c~~   54 (141)
                      .+|...+|.++++|...  ...|+|.|.+ +|+|..|+.
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~-gy~G~~Ce~   44 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVI-GYSGDRCQT   44 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCT-TCCSSSSCC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCC-CCcCCCCcc
Confidence            45666788888898743  3468899984 899988863

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00015  Score=35.19  Aligned_cols=35  Identities=31%  Similarity=0.861  Sum_probs=28.1

Q ss_pred             cCcCCCCCCCCEEee--CCCCeeecCCCCCCCCCCCC
Q psy9687          58 DCAPNPCKNGARCVD--KVKDYLCECYPGYTGKTCAD   92 (141)
Q Consensus        58 ~c~~~~c~~~~~c~~--~~~~~~c~C~~g~~~~~c~~   92 (141)
                      .|...+|.+++.|..  ....|.|.|+++|.|.+|+.
T Consensus         8 ~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_           8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             TTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            345678999999974  34579999999999999963

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4.3e-05  Score=34.82  Aligned_cols=29  Identities=38%  Similarity=1.007  Sum_probs=19.4

Q ss_pred             cCCCCC-CCCCCCCEEeecCCceeEecCCCCcc
Q psy9687          17 IDDCES-GPCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        17 ~~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      +|||.. .+|.  ..|.|+.|+|.|.|.+ ||.
T Consensus         2 idEC~~~~~C~--~~C~N~~Gsy~C~C~~-Gy~   31 (40)
T d1dx5i3           2 IDECENGGFCS--GVCHNLPGTFECICGP-DSA   31 (40)
T ss_dssp             CCHHHHCSSCS--SEEEECSSSEEEEECS-SSS
T ss_pred             ccccCCCcCcc--CEeeCCCCCeEeECCC-CCe
Confidence            455542 3353  4788888888888884 775

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00011  Score=34.45  Aligned_cols=31  Identities=32%  Similarity=0.884  Sum_probs=20.1

Q ss_pred             cCCCCCCC---CCCCCEEeecCCceeEecCCCCcc
Q psy9687          17 IDDCESGP---CLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        17 ~~~c~~~~---c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      ||||...+   +.....|.++.|+|.|.|.+ ||.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~-Gy~   34 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRA-GYV   34 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCT-TEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCC-CCe
Confidence            35565432   22345788888888888884 875

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=1.5e-05  Score=37.12  Aligned_cols=32  Identities=31%  Similarity=0.940  Sum_probs=24.5

Q ss_pred             CCCcCcCC--CCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          55 NIDDCAPN--PCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        55 ~~~~c~~~--~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      ++++|...  .|. ++.|+++.|+|.|.|++||..
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l   35 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYL   35 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCB
T ss_pred             CcccccCCCCCcC-CCEEECCCCCeEeECCCCCeE
Confidence            56777633  343 468999999999999999963

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3e-05  Score=35.34  Aligned_cols=30  Identities=27%  Similarity=0.626  Sum_probs=22.7

Q ss_pred             CCcCcC-CCCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          56 IDDCAP-NPCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        56 ~~~c~~-~~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      +++|.. .+|  ...|+++.|+|+|.|++||..
T Consensus         2 idEC~~~~~C--~~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           2 IDECENGGFC--SGVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             CCHHHHCSSC--SSEEEECSSSEEEEECSSSSC
T ss_pred             ccccCCCcCc--cCEeeCCCCCeEeECCCCCee
Confidence            456642 334  468999999999999999964

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00012  Score=35.52  Aligned_cols=32  Identities=34%  Similarity=0.886  Sum_probs=23.9

Q ss_pred             CCCcCcCCC--------CCCCCEEeeCCCCeeecCCCCCC
Q psy9687          55 NIDDCAPNP--------CKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        55 ~~~~c~~~~--------c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ++++|....        +.....|+++.|+|+|.|++||+
T Consensus         3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~   42 (53)
T d1apqa_           3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE   42 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCE
T ss_pred             ecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCe
Confidence            566775321        23345899999999999999996

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.00012  Score=34.29  Aligned_cols=20  Identities=35%  Similarity=1.022  Sum_probs=15.3

Q ss_pred             CCEEeecCCceeEecCCCCcc
Q psy9687          28 GGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        28 ~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      .+.|.++.|+|.|.|.+ ||.
T Consensus        15 ~~~C~Nt~gsy~C~C~~-Gy~   34 (45)
T d1nt0a3          15 DHYCHNYLGGYYCSCRV-GYI   34 (45)
T ss_dssp             SSEEEEETTEEEEECCT-TEE
T ss_pred             CCEeecCCCCEEEeCCC-CCE
Confidence            44788888888888884 775

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=5.3e-05  Score=34.57  Aligned_cols=25  Identities=36%  Similarity=0.886  Sum_probs=18.7

Q ss_pred             CCCCCCEEeeCCCCeeecCCCCCCC
Q psy9687          63 PCKNGARCVDKVKDYLCECYPGYTG   87 (141)
Q Consensus        63 ~c~~~~~c~~~~~~~~c~C~~g~~~   87 (141)
                      .|..++.|.++.++|.|.|.+||.|
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~Gy~G   32 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVANYTG   32 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECTTEEE
T ss_pred             CCCCCCEeecCCCCeEeECCCCCcC
Confidence            4666777888888888888888764

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00017  Score=33.04  Aligned_cols=28  Identities=36%  Similarity=1.123  Sum_probs=18.3

Q ss_pred             CCCCC-CCCCCCCEEeecCCceeEecCCCCcc
Q psy9687          18 DDCES-GPCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        18 ~~c~~-~~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      |+|.. .+|.  ..|.++.|+|.|.|.+ ||.
T Consensus         2 dEC~~~~~C~--~~C~n~~Gsy~C~C~~-Gy~   30 (41)
T d1i0ua2           2 DECQDPDTCS--QLCVNLEGGYKCQCEE-GFQ   30 (41)
T ss_dssp             CTTTTTTSCS--SCEECSSSCCEECCCT-TEE
T ss_pred             ccCCCCCCCC--CEeECCCCCEEeECCC-CCe
Confidence            55542 2343  3788888888888884 775

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00014  Score=34.51  Aligned_cols=34  Identities=26%  Similarity=0.726  Sum_probs=27.3

Q ss_pred             cCcCCCCCCCCEEee--CCCCeeecCCCCCCCCCCC
Q psy9687          58 DCAPNPCKNGARCVD--KVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        58 ~c~~~~c~~~~~c~~--~~~~~~c~C~~g~~~~~c~   91 (141)
                      .|...+|.+++.|..  ....|.|.|+++|+|.+|+
T Consensus         6 ~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           6 LSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             STTCCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCC
Confidence            345677899999975  3457999999999999885

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00019  Score=32.60  Aligned_cols=26  Identities=31%  Similarity=0.827  Sum_probs=22.0

Q ss_pred             CCCCCCEEeecCCceeEecCCCCccCC
Q psy9687          24 PCLNGGLCKDLLNNYTCNCQQTGYTGP   50 (141)
Q Consensus        24 ~c~~~~~C~~~~g~~~c~c~~~g~~g~   50 (141)
                      .|..++.|.++.++|.|.|.+ ||.|.
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~-Gy~Gd   33 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVA-NYTGN   33 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECT-TEEEC
T ss_pred             CCCCCCEeecCCCCeEeECCC-CCcCC
Confidence            466778999999999999995 99853

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.00022  Score=33.35  Aligned_cols=22  Identities=27%  Similarity=0.708  Sum_probs=19.0

Q ss_pred             CCCCEEeeCCCCeeecCCCCCC
Q psy9687          65 KNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        65 ~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      .....|+++.++|+|.|++||.
T Consensus        13 ~C~~~C~Nt~gsy~C~C~~Gy~   34 (45)
T d1nt0a3          13 PCDHYCHNYLGGYYCSCRVGYI   34 (45)
T ss_dssp             CCSSEEEEETTEEEEECCTTEE
T ss_pred             CCCCEeecCCCCEEEeCCCCCE
Confidence            3456899999999999999995

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00033  Score=32.70  Aligned_cols=22  Identities=23%  Similarity=0.795  Sum_probs=19.2

Q ss_pred             CCCCEEeeCCCCeeecCCCCCC
Q psy9687          65 KNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        65 ~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      .....|.++.|+|.|.|++||.
T Consensus        13 ~C~~~C~Nt~Gsy~C~C~~Gy~   34 (45)
T d1szba2          13 TCDHHCHNHLGGFYCSCRAGYV   34 (45)
T ss_dssp             SSSSEEEEETTEEEEECCTTEE
T ss_pred             CCCCCCccCCCCeEEECCCCCe
Confidence            3456899999999999999995

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00037  Score=31.66  Aligned_cols=30  Identities=27%  Similarity=0.572  Sum_probs=21.0

Q ss_pred             CcCcCCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ++|..........|+++.++|.|.|++||.
T Consensus         3 neC~~~nggC~h~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             CGGGTGGGGCSSEEEECSSSEEEECCTTCC
T ss_pred             ccCCCCCCCCcCEEEcCCCCEEEECCCCCE
Confidence            455543333345888888889999998885

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0004  Score=31.73  Aligned_cols=29  Identities=31%  Similarity=0.801  Sum_probs=21.5

Q ss_pred             CcCcCCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          57 DDCAPNPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        57 ~~c~~~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ++|.. +......|.++.|+|.|.|++||.
T Consensus         2 dEC~~-~~~C~~~C~n~~Gsy~C~C~~Gy~   30 (41)
T d1i0ua2           2 DECQD-PDTCSQLCVNLEGGYKCQCEEGFQ   30 (41)
T ss_dssp             CTTTT-TTSCSSCEECSSSCCEECCCTTEE
T ss_pred             ccCCC-CCCCCCEeECCCCCEEeECCCCCe
Confidence            45542 223345899999999999999996

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00077  Score=30.54  Aligned_cols=31  Identities=26%  Similarity=0.669  Sum_probs=22.4

Q ss_pred             cCCCCCCCCCCCCEEeecCCceeEecCCCCcc
Q psy9687          17 IDDCESGPCLNGGLCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        17 ~~~c~~~~c~~~~~C~~~~g~~~c~c~~~g~~   48 (141)
                      +++|...+..-...|+++.++|+|.|.+ ||.
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~-Gy~   32 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPD-GFQ   32 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCT-TCC
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCC-CCE
Confidence            4667654422234999999999999995 885

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0018  Score=29.58  Aligned_cols=18  Identities=28%  Similarity=1.036  Sum_probs=14.1

Q ss_pred             EEeecCCceeEecCCCCcc
Q psy9687          30 LCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        30 ~C~~~~g~~~c~c~~~g~~   48 (141)
                      .|.++.|+|.|.|.. ||.
T Consensus        14 ~C~n~~Gsy~C~C~~-Gy~   31 (42)
T d1nzia2          14 FCNNFIGGYFCSCPP-EYF   31 (42)
T ss_dssp             EEEEETTEEEEECCT-TCE
T ss_pred             EeecCCCCEEEeCCC-CCE
Confidence            788888888888884 775

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0028  Score=28.93  Aligned_cols=20  Identities=30%  Similarity=0.816  Sum_probs=18.0

Q ss_pred             CCEEeeCCCCeeecCCCCCC
Q psy9687          67 GARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        67 ~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ...|+++.|+|.|.|++||.
T Consensus        12 ~~~C~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2          12 SHFCNNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             SSEEEEETTEEEEECCTTCE
T ss_pred             CCEeecCCCCEEEeCCCCCE
Confidence            45899999999999999995

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0082  Score=26.08  Aligned_cols=15  Identities=27%  Similarity=0.877  Sum_probs=8.1

Q ss_pred             eeecCCCCCCCCCCC
Q psy9687          77 YLCECYPGYTGKTCA   91 (141)
Q Consensus        77 ~~c~C~~g~~~~~c~   91 (141)
                      .+|.|+.+|.|..|+
T Consensus        20 ~rC~CPk~f~G~HCE   34 (40)
T d2i9aa1          20 HWCNCPKKFGGQHCE   34 (40)
T ss_dssp             EEEECCTTEESTTSC
T ss_pred             EEecCCcccCceeEE
Confidence            445555555555554

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.017  Score=26.75  Aligned_cols=28  Identities=32%  Similarity=0.891  Sum_probs=15.2

Q ss_pred             CCCCCCEEe--eCCCCeeecCCCCCCCCCCC
Q psy9687          63 PCKNGARCV--DKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        63 ~c~~~~~c~--~~~~~~~c~C~~g~~~~~c~   91 (141)
                      .|.+ +.|.  .....+.|.|++||.|.+|+
T Consensus        13 yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          13 YCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             SCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             cCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            4544 4442  23344666677776666663

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.015  Score=27.44  Aligned_cols=29  Identities=28%  Similarity=0.564  Sum_probs=16.2

Q ss_pred             CCCCCCEEe-eCCCCeeecCCCCCCCCCCC
Q psy9687          63 PCKNGARCV-DKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        63 ~c~~~~~c~-~~~~~~~c~C~~g~~~~~c~   91 (141)
                      .|.+++.|. .....+.|.|+.+|.|.+|+
T Consensus        15 yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe   44 (50)
T d1ioxa_          15 YCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             SCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CccCCeEEEeCCCCCcEeECCCCCeeCCCc
Confidence            355555552 33344567777777666663

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.03  Score=25.85  Aligned_cols=30  Identities=43%  Similarity=1.006  Sum_probs=22.8

Q ss_pred             CCCCCCCCEEe--ecCCceeEecCCCCccCCCCC
Q psy9687          22 SGPCLNGGLCK--DLLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        22 ~~~c~~~~~C~--~~~g~~~c~c~~~g~~g~~c~   53 (141)
                      ...|.+ +.|.  .....+.|.|.. +|.|.+|+
T Consensus        11 ~~yC~n-G~C~~~~~~~~~~C~C~~-gY~G~RCe   42 (46)
T d1k36a_          11 NGYCLH-GQCIYLVDMSQNYCRCEV-GYTGVRCE   42 (46)
T ss_dssp             CSSCSS-EEEEEETTTTEEEEEECT-TCSSTTSC
T ss_pred             CCcCcC-CEEEEeCCCCccEeECCC-CceecCce
Confidence            456888 5675  345678999994 99999996

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.029  Score=26.39  Aligned_cols=32  Identities=28%  Similarity=0.632  Sum_probs=24.8

Q ss_pred             CCCCCCCCEEeec-CCceeEecCCCCccCCCCCc
Q psy9687          22 SGPCLNGGLCKDL-LNNYTCNCQQTGYTGPHCEI   54 (141)
Q Consensus        22 ~~~c~~~~~C~~~-~g~~~c~c~~~g~~g~~c~~   54 (141)
                      ...|.+++.|... ...+.|.|. .+|+|..|+.
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C~C~-~gy~G~rCe~   45 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSCVCD-EGYIGARCER   45 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCC-TTEETTTTCE
T ss_pred             CCCccCCeEEEeCCCCCcEeECC-CCCeeCCCcc
Confidence            3568898888543 456899999 4999999963

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.013  Score=27.51  Aligned_cols=28  Identities=29%  Similarity=0.698  Sum_probs=15.5

Q ss_pred             CCCCCEE-eeCCCCeeecCCCCCCCCCCC
Q psy9687          64 CKNGARC-VDKVKDYLCECYPGYTGKTCA   91 (141)
Q Consensus        64 c~~~~~c-~~~~~~~~c~C~~g~~~~~c~   91 (141)
                      |.+++.| +.....+.|.|+.||.|.+|+
T Consensus        15 ClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          15 CFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             STTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             eeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            4444444 223344667777777776664

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.059  Score=23.07  Aligned_cols=25  Identities=32%  Similarity=0.937  Sum_probs=19.2

Q ss_pred             CCCCCCCCEEeeCCCCeeecCCCCCC
Q psy9687          61 PNPCKNGARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        61 ~~~c~~~~~c~~~~~~~~c~C~~g~~   86 (141)
                      .++|.+ +.|.+..|+|.|.|..||-
T Consensus         7 gnpCGn-GTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           7 GNPCGN-GTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             TCSSSS-SCEEECSSSEEECCSSSSC
T ss_pred             CCccCC-ceeeecccceEEeecCCcC
Confidence            355654 5788889999999988884

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.15  Score=23.81  Aligned_cols=18  Identities=28%  Similarity=0.813  Sum_probs=13.8

Q ss_pred             EEeecCCceeEecCCCCcc
Q psy9687          30 LCKDLLNNYTCNCQQTGYT   48 (141)
Q Consensus        30 ~C~~~~g~~~c~c~~~g~~   48 (141)
                      .|.++.++|+|.|.. ||.
T Consensus        12 ~C~~~~g~~~C~C~~-Gy~   29 (50)
T d1autl2          12 YCLEEVGWRRCSCAP-GYK   29 (50)
T ss_dssp             EEEECSSSEEEECCT-TEE
T ss_pred             EeecCCCCeEEECCC-CCE
Confidence            778888888888874 775

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.1  Score=24.49  Aligned_cols=20  Identities=30%  Similarity=0.793  Sum_probs=17.5

Q ss_pred             CCEEeeCCCCeeecCCCCCC
Q psy9687          67 GARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        67 ~~~c~~~~~~~~c~C~~g~~   86 (141)
                      ...|+++.++|.|.|+.||.
T Consensus        11 ~h~C~n~~g~~~C~C~~Gy~   30 (51)
T d2p3ua1          11 DQFCHEEQNSVVCSCARGYT   30 (51)
T ss_dssp             SSEEEEETTEEEEECCTTEE
T ss_pred             ccEeecCCCCeEeEcCCCCE
Confidence            35789999999999999995

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.40  E-value=0.12  Score=24.25  Aligned_cols=19  Identities=26%  Similarity=0.733  Sum_probs=16.3

Q ss_pred             CEEeeCCCCeeecCCCCCC
Q psy9687          68 ARCVDKVKDYLCECYPGYT   86 (141)
Q Consensus        68 ~~c~~~~~~~~c~C~~g~~   86 (141)
                      ..|+++.++|.|.|++||.
T Consensus        10 h~C~~~~~~~~C~C~~Gy~   28 (51)
T d1kigl_          10 QFCREERSEVRCSCAHGYV   28 (51)
T ss_dssp             SCCCEETTEECCCCCTTEE
T ss_pred             cEeEcCCCcEEeEcCCCCE
Confidence            3578888999999999995

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.71  E-value=0.19  Score=22.37  Aligned_cols=27  Identities=41%  Similarity=1.045  Sum_probs=18.6

Q ss_pred             CCCCCEEee--cCCceeEecCCCCccCCCCC
Q psy9687          25 CLNGGLCKD--LLNNYTCNCQQTGYTGPHCE   53 (141)
Q Consensus        25 c~~~~~C~~--~~g~~~c~c~~~g~~g~~c~   53 (141)
                      |.+ +.|.-  ....+.|.|.. +|.|..|+
T Consensus        10 Cih-G~C~~i~~l~~~~C~C~~-gY~G~RCq   38 (41)
T d1xdtr_          10 CIH-GECKYVKELRAPSCICHP-GYHGERCH   38 (41)
T ss_dssp             CSS-EEECCBGGGTBCCEEECT-TEESTTCC
T ss_pred             eEC-cEEeecCcCCCceeECCC-CCeecCcc
Confidence            555 67743  34456888884 88888885

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.28  E-value=0.52  Score=21.82  Aligned_cols=15  Identities=20%  Similarity=0.598  Sum_probs=11.9

Q ss_pred             eCCCCeeecCCCCCC
Q psy9687          72 DKVKDYLCECYPGYT   86 (141)
Q Consensus        72 ~~~~~~~c~C~~g~~   86 (141)
                      +..++|.|.|+.||.
T Consensus        26 n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          26 PHSPKFTCACPDGML   40 (50)
T ss_dssp             TTCCSEEEECCTTCE
T ss_pred             cCCCCEEEeCCCCCE
Confidence            345789999999985