Psyllid ID: psy9698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT
Secondary Structure (PSIPRED)
cEEEEccccccccccccHHHHHHHccccccccccccccccccccEEEEccccEEEEEEEccccEEEEEEEcccHHHHcccEEEEEEccccccccccccccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccEEEEccccccccccccccHcccccccEEcEEEEcccEEEEEEEEccccEEEEEEEccHHHHHcccEEEEEEcHHHccccccccccccccccccccccccccccHcccc
Coil and Loop (DISEMBL)
myilkqgkippnvdkgLFLSQLIRQLDqegprlrttqprpivkdtvgnlpsgyTVVRVHfnnpgmwyfHCHFVMHTDTGMTLVFQvgdrkqfvrapphfpqcdnfqpavtKQDWAAAKNLEKT
Flexible Loop (DISEMBL)
myilkqgkippnvdKGLFLSQLIRQLDqegprlrttqprpivkdtvgnlpsGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT
Low Complexity Region (SEG)
MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT
Disordered region (IsUnstruct)
*************DKGLFLSQLIRQ***************IVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAV**************
Disordered Region (DISOPRED)
MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDW*********
Disordered Region (DISEMBL)
MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT
Disordered Region (DISPRO)
MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVT*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q0IQU1	564	Laccase-22 OS=Oryza sativ	yes	N/A	0.512	0.111	0.373	2e-08
P43561	622	Iron transport multicoppe	yes	N/A	0.373	0.073	0.521	5e-08
Q9FY79	569	Laccase-14 OS=Arabidopsis	yes	N/A	0.634	0.137	0.378	1e-07
Q6Z8L2	579	Putative laccase-9 OS=Ory	no	N/A	0.512	0.108	0.417	1e-07
Q6ID18	558	Laccase-10 OS=Arabidopsis	no	N/A	0.512	0.112	0.373	1e-07
Q5N7B4	559	Laccase-7 OS=Oryza sativa	no	N/A	0.512	0.112	0.373	4e-07
Q1PDH6	566	Laccase-16 OS=Arabidopsis	no	N/A	0.512	0.111	0.343	6e-07
O80434	558	Laccase-4 OS=Arabidopsis	no	N/A	0.512	0.112	0.358	6e-07
Q9LFD1	586	Laccase-9 OS=Arabidopsis	no	N/A	0.512	0.107	0.402	6e-07
Q7XE50	467	Putative laccase-16 OS=Or	no	N/A	0.512	0.134	0.388	7e-07

>sp|Q0IQU1|LAC22_ORYSJ Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQ----FVRA 95
           PI ++T+G    G+T +R   +NPG+W+ HCHF +HT  G+ + F V + K+     +  
Sbjct: 498 PIERNTIGVPTGGWTAIRFRSDNPGVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPP 557

Query: 96  PPHFPQC 102
           P   PQC
Sbjct: 558 PKDLPQC 564

Lignin degradation and detoxification of lignin-derived products.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 0EC: .EC: 3EC: .EC: 2

>sp|P43561|FET5_YEAST Iron transport multicopper oxidase FET5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FET5 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%)

Query: 39  RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           RP+V+DTV   PSG+ V+R   +NPG+WYFHCH   H   G+  VF
Sbjct: 466 RPMVRDTVVLEPSGHVVLRFRADNPGVWYFHCHVDWHLQQGLASVF 511

Iron transport multicopper oxidase, which is required for Fe(2+) high affinity uptake. May be required to oxidize Fe(2+) and release it from the transporter. Essential component of copper-dependent iron transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9FY79|LAC14_ARATH Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 25  QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
             D+    LR     P  + TVG   +G+T VR   NNPG+W  HCH   H   GM  VF
Sbjct: 488 NFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTVF 547

Query: 85  QVGD----RKQFVRAPPHFPQC 102
            V D      + V+ PP  P C
Sbjct: 548 IVKDGPTKSSRMVKPPPDLPSC 569

Lignin degradation and detoxification of lignin-derived products.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q6Z8L2|LAC9_ORYSJ Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK----QFVRA 95
           P  ++TV    SG+  +R   +NPG+W+ HCHF  H   GM  VF V D K    Q +  
Sbjct: 513 PPFQNTVSVPRSGWAAIRFRADNPGVWFMHCHFDRHVVWGMDTVFIVKDGKTPQAQMLPR 572

Query: 96  PPHFPQC 102
           PP+ PQC
Sbjct: 573 PPNMPQC 579

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q6ID18|LAC10_ARATH Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK---QFVRAP 96
           P+ ++TVG    G+  +R   +NPG+W+ HCH  +HT  G+ + F V + K   Q +R P
Sbjct: 492 PVERNTVGVPSGGWAAIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSIRPP 551

Query: 97  PH-FPQC 102
           P   P+C
Sbjct: 552 PSDLPKC 558

Lignin degradation and detoxification of lignin-derived products.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5N7B4|LAC7_ORYSJ Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK---QFVRAP 96
           P+ ++T+     G+ V+R   NNPGMW+FHCH   H   G+ +VF V +      F+  P
Sbjct: 493 PVSRNTLAVPTGGWAVIRFVANNPGMWFFHCHLDAHVPMGLGMVFAVDNGTTPDSFLPPP 552

Query: 97  P-HFPQC 102
           P   P+C
Sbjct: 553 PADLPKC 559

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q1PDH6|LAC16_ARATH Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV----GDRKQFVRA 95
           P+ ++TVG    G+T +R   +NPG+W+ HCH  +HT  G+ + F V    G  +  +  
Sbjct: 500 PVERNTVGVPAGGWTAIRFIADNPGVWFMHCHLELHTTWGLKMAFVVDNGHGPDQSLLPP 559

Query: 96  PPHFPQC 102
           P   P+C
Sbjct: 560 PADLPKC 566

Lignin degradation and detoxification of lignin-derived products.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|O80434|LAC4_ARATH Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK---QFVRAP 96
           P+ ++T+G    G+ V+R   +NPG+W+ HCH  +HT  G+ + F V + K   Q +  P
Sbjct: 492 PVERNTIGVPSGGWVVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSILPP 551

Query: 97  PH-FPQC 102
           P   P+C
Sbjct: 552 PKDLPKC 558

Lignin degradation and detoxification of lignin-derived products (By similarity). Required for secondary xylem cell wall lignification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9LFD1|LAC9_ARATH Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVRAP 96
           P + +TVG  P G+ V+R   NNPG+W FHCH   H   G+ + F V +   R+  + +P
Sbjct: 502 PQMHNTVGVPPGGWVVLRFIANNPGIWLFHCHMDAHLPLGIMMAFIVQNGPTRETSLPSP 561

Query: 97  P-HFPQC 102
           P + PQC
Sbjct: 562 PSNLPQC 568

Lignin degradation and detoxification of lignin-derived products.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q7XE50|LAC16_ORYSJ Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK----QFVRA 95
           P  ++TV    S +  +R   +NPG+W+ HCHF  H   GM  VF V D K    Q +  
Sbjct: 401 PPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWGMDTVFIVKDGKTPQAQMLPR 460

Query: 96  PPHFPQC 102
           PP+ P+C
Sbjct: 461 PPNMPEC 467

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
345497033	663	PREDICTED: L-ascorbate oxidase-like [Nas	0.796	0.147	0.45	2e-18
239787110	624	venom laccase precursor [Nasonia vitripe	0.739	0.145	0.423	2e-17
156540616	677	PREDICTED: laccase-like [Nasonia vitripe	0.756	0.137	0.473	3e-17
380011697	729	PREDICTED: LOW QUALITY PROTEIN: laccase-	0.682	0.115	0.482	1e-16
170053960	984	multicopper oxidase [Culex quinquefascia	0.739	0.092	0.445	2e-16
170073770	271	multicopper oxidase [Culex quinquefascia	0.739	0.335	0.445	2e-16
157116980	929	multicopper oxidase [Aedes aegypti] gi|1	0.869	0.115	0.379	3e-16
328790075	727	PREDICTED: laccase-1-like [Apis mellifer	0.682	0.115	0.470	3e-16
345497358	743	PREDICTED: laccase-2-like [Nasonia vitri	0.804	0.133	0.39	6e-16
350399770	727	PREDICTED: laccase-1-like [Bombus impati	0.886	0.149	0.423	7e-16

>gi|345497033|ref|XP_001600222.2| PREDICTED: L-ascorbate oxidase-like [Nasonia vitripennis]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 63/100 (63%), Gaps = 2/100 (2%)

Query: 12  NVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCH 71
           N+D G+     I++LD+EG   R     P+ KDT+ +   GYT+VR++ NNPG W+FHCH
Sbjct: 566 NLD-GVVTVDRIKKLDKEGKVKRRLHRAPL-KDTIKSPGGGYTIVRLYANNPGYWFFHCH 623

Query: 72  FVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTK 111
           F  HT+ GM L+F+VG+ K F + P  FP+C  F P   K
Sbjct: 624 FEQHTNVGMALIFKVGEHKDFAKIPKDFPKCGGFTPITMK 663

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239787110|ref|NP_001155158.1| venom laccase precursor [Nasonia vitripennis]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 16  GLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH 75
           G    + ++++D+EG   R  +  P+ KDTV     GYT++R H NNPG W+FHCHF MH
Sbjct: 532 GTITLEKLKKMDREGKIRRKLRGAPL-KDTVMVPSGGYTILRFHANNPGYWFFHCHFEMH 590

Query: 76  TDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQP 107
            D GM L+F++G+ + F + P +FP+C  ++P
Sbjct: 591 ADIGMALIFKIGEHEDFRKPPENFPKCGKYKP 622

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540616|ref|XP_001603789.1| PREDICTED: laccase-like [Nasonia vitripennis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 12  NVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCH 71
           N+D G+  +  IRQLD+EG +++    R   KDT+     GYT+VR H NNPG W+FHCH
Sbjct: 584 NLD-GIVTADRIRQLDKEG-KIKRNLNRAPFKDTMKTPGGGYTIVRFHANNPGYWFFHCH 641

Query: 72  FVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQ 106
           F  H + GM LVF+VG+ K  V  P  FP+C  F+
Sbjct: 642 FEHHVNIGMALVFKVGEHKDMVPVPKDFPKCGTFK 676

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011697|ref|XP_003689934.1| PREDICTED: LOW QUALITY PROTEIN: laccase-1-like [Apis florea]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 23  IRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTL 82
           ++ LD+EG   R     P+ KDTV     GYTVVR H NNPG W FHCH   H + GM+L
Sbjct: 567 VKALDKEGAIRRNLDHAPL-KDTVTVPDGGYTVVRFHANNPGYWLFHCHIEFHAEVGMSL 625

Query: 83  VFQVGDRKQFVRAPPHFPQCDNFQP 107
           +F+VG+ K  +  P +FP C N+QP
Sbjct: 626 IFKVGEHKDMLPVPHNFPLCGNWQP 650

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170053960|ref|XP_001862911.1| multicopper oxidase [Culex quinquefasciatus] gi|167874381|gb|EDS37764.1| multicopper oxidase [Culex quinquefasciatus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 16  GLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH 75
           G   ++ +++LD+EG   R  +  PI KDTV     GYT++R   NNPG W FHCH   H
Sbjct: 862 GNVTAEEVKRLDEEGKLPRRLRGAPI-KDTVTIPDGGYTIIRFIANNPGYWLFHCHIEFH 920

Query: 76  TDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQP 107
            + GM LV +VGDR + + AP +FP C +F P
Sbjct: 921 AEIGMALVLKVGDRSEMLSAPANFPTCSDFTP 952

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170073770|ref|XP_001870433.1| multicopper oxidase [Culex quinquefasciatus] gi|167870425|gb|EDS33808.1| multicopper oxidase [Culex quinquefasciatus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 16  GLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH 75
           G   ++ +++LD+EG   R  +  PI KDTV     GYT++R   NNPG W FHCH   H
Sbjct: 149 GKVTAEEVKRLDEEGKLPRRLRGAPI-KDTVTIPDGGYTIIRFIANNPGYWLFHCHIEFH 207

Query: 76  TDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQP 107
            + GM LV +VGDR + + AP +FP C +F P
Sbjct: 208 AEIGMALVLKVGDRSEMLSAPANFPTCSDFTP 239

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116980|ref|XP_001652917.1| multicopper oxidase [Aedes aegypti] gi|108876239|gb|EAT40464.1| AAEL007802-PA, partial [Aedes aegypti]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

Query: 16  GLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH 75
           G   ++ +++LD+EG   R  +  PI KDTV     GYT++R   NNPG W FHCH   H
Sbjct: 804 GNITAEEVKRLDEEGKIKRRLKGAPI-KDTVTIPDGGYTIIRFIANNPGYWLFHCHIEFH 862

Query: 76  TDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT 123
            + GM+LV +VGD+ + V AP +FP C ++ P +  Q+ +    ++++
Sbjct: 863 AEIGMSLVLKVGDKSEMVAAPHNFPTCYDYTPNLGSQNSSGQYTVQQS 910

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790075|ref|XP_001120790.2| PREDICTED: laccase-1-like [Apis mellifera]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 23  IRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTL 82
           ++ LD++G   R     P+ KDTV     GYTVVR H NNPG W FHCH   H + GM+L
Sbjct: 565 VKALDKKGAIRRNLDHAPL-KDTVTVPDGGYTVVRFHANNPGYWLFHCHIEFHAEVGMSL 623

Query: 83  VFQVGDRKQFVRAPPHFPQCDNFQP 107
           +F+VG+ K  +  P +FP C N+QP
Sbjct: 624 IFKVGEHKDMLPVPRNFPLCGNWQP 648

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497358|ref|XP_001603034.2| PREDICTED: laccase-2-like [Nasonia vitripennis]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 12  NVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCH 71
           N+  G+      +Q+D +G  +R     P  KDT+     GYT++RV+ +NPG WY+HCH
Sbjct: 645 NILDGVMTVDRFKQMDMDGKVVRRLDHAP-KKDTIKIPSGGYTIIRVYTHNPGYWYYHCH 703

Query: 72  FVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTK 111
           F  H + GM L+F+VG+   F   P  FP+C ++ P V K
Sbjct: 704 FEEHNNVGMALIFKVGEHADFAPEPKDFPKCGDYAPLVMK 743

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399770|ref|XP_003485633.1| PREDICTED: laccase-1-like [Bombus impatiens]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 13  VDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHF 72
           V K + + Q I+ LD++G   R     P+ KDTV     GYT+VR H NNPG W FHCH 
Sbjct: 555 VGKNVTVDQ-IKALDKKGAIQRNLDRAPL-KDTVTVPDGGYTIVRFHANNPGYWLFHCHI 612

Query: 73  VMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAVTKQDWAAAKNLEKT 123
             H + GM+L+F+VG+ K  +  P +FP C N+QP   +    AA  L  T
Sbjct: 613 EFHAEVGMSLIFKVGEHKDMLPVPNNFPLCGNWQPEDIRFKSNAASILLNT 663

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0259247	784	laccase2 "laccase 2" [Drosophi	0.861	0.135	0.388	7.9e-16
FB|FBgn0032116	959	Mco1 "Multicopper oxidase-1" [	0.829	0.106	0.398	8.3e-16
SGD|S000001853	622	FET5 "Multicopper oxidase" [Sa	0.455	0.090	0.464	1.4e-09
FB|FBgn0052557	645	CG32557 [Drosophila melanogast	0.585	0.111	0.386	1.6e-09
FB|FBgn0039387	677	MCO3 "multicopper oxidase 3" [	0.585	0.106	0.402	5.9e-09
TAIR|locus:2182895	569	LAC13 "laccase 13" [Arabidopsi	0.512	0.110	0.402	7.6e-09
TAIR|locus:2150139	558	LAC10 "laccase 10" [Arabidopsi	0.504	0.111	0.397	1.5e-08
TAIR|locus:2184802	569	LAC14 "laccase 14" [Arabidopsi	0.617	0.133	0.387	3.3e-08
TAIR|locus:2042842	558	IRX12 "IRREGULAR XYLEM 12" [Ar	0.504	0.111	0.382	4.1e-08
TAIR|locus:2135242	582	AT4G39830 [Arabidopsis thalian	0.487	0.103	0.426	7.1e-08

FB|FBgn0259247 laccase2 "laccase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 42/108 (38%), Positives = 58/108 (53%)

Query:     2 YILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFN 61
             Y+L  G+ P    + + L   + +LDQ G  L     +P +KDTV    +GY ++R   +
Sbjct:   676 YVLGLGRSPDKQIQRMNLKHAL-ELDQRG-LLERQYLKPSLKDTVAVPNNGYAILRFRAD 733

Query:    62 NPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDNFQPAV 109
             NPG W FHCHF  H   GM LVFQ+G        PP+FP+C N  P +
Sbjct:   734 NPGFWLFHCHFQYHIVIGMNLVFQIGTPNDLPPVPPNFPRCGNHLPPI 781

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0040003 "chitin-based cuticle development" evidence=IMP

FB|FBgn0032116 Mco1 "Multicopper oxidase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 8.3e-16, P = 8.3e-16
 Identities = 43/108 (39%), Positives = 61/108 (56%)

Query:    21 QLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
             ++I+QLDQ    L+     P VKDTV     GYT++R   +NPG W FHCH   H + GM
Sbjct:   824 EMIKQLDQFN-LLKRNLDNPPVKDTVTIPDGGYTIIRFEASNPGYWLFHCHIEFHAEIGM 882

Query:    81 TLVFQVGDRKQFVRAPPHFPQCDNFQPAV-----TKQDWAAAKNLEKT 123
              LVF+VG+  Q V  P +FP C ++ P +     T +D  ++K +  T
Sbjct:   883 ALVFKVGNDDQMVPVPENFPTCGDYNPDLRSDGGTTEDSGSSKPITAT 930

GO:0005381 "iron ion transmembrane transporter activity" evidence=ISS

GO:0004322 "ferroxidase activity" evidence=ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0031233 "intrinsic to external side of plasma membrane" evidence=ISM

GO:0009986 "cell surface" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0045178 "basal part of cell" evidence=IDA

SGD|S000001853 FET5 "Multicopper oxidase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 140 (54.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query:    29 EGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
             E   L+    RP+V+DTV   PSG+ V+R   +NPG+WYFHCH   H   G+  VF
Sbjct:   456 ESAPLQPFPERPMVRDTVVLEPSGHVVLRFRADNPGVWYFHCHVDWHLQQGLASVF 511

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006826 "iron ion transport" evidence=IMP

GO:0004322 "ferroxidase activity" evidence=IGI;ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0052557 CG32557 [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query:    23 IRQLDQEGPRLRTTQPRPIVKDTVGNLPS-GYTVVRVHFNNPGMWYFHCHFVMHTDTGMT 81
             I Q+D++ P  R  +  P+ KD+V  +P+ GYT++R + N+PG W FHCH   H++ GM 
Sbjct:   562 IEQIDKKTPLPRRAKGAPL-KDSV-QVPAFGYTILRFYSNSPGYWMFHCHISPHSENGMA 619

Query:    82 LVFQVGDRKQFVRAP 96
              V +VG+  +    P
Sbjct:   620 AVVRVGEDVEMKMCP 634

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=ISS

GO:0005507 "copper ion binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0039387 MCO3 "multicopper oxidase 3" [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 31/77 (40%), Positives = 42/77 (54%)

Query:    23 IRQLDQEG--PRLRTTQPRPIVKDTVGNLPS-GYTVVRVHFNNPGMWYFHCHFVMHTDTG 79
             I++LD+ G  PRL +     + KDTV  +P  GY +VR   NNPG W +HCH   H   G
Sbjct:   598 IQELDRRGRLPRL-SEDSAAVAKDTV-QIPGQGYIIVRFISNNPGFWLYHCHVEAHAVQG 655

Query:    80 MTLVFQVGDRKQFVRAP 96
             M  V ++G+  Q    P
Sbjct:   656 MVAVLKIGEDHQMKNIP 672

GO:0008447 "L-ascorbate oxidase activity" evidence=ISS

GO:0005381 "iron ion transmembrane transporter activity" evidence=ISS

GO:0004322 "ferroxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0055070 "copper ion homeostasis" evidence=IDA

TAIR|locus:2182895 LAC13 "laccase 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query:    40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV--GD-RKQFVRAP 96
             P  ++T+G  P G+  +R   NNPG W  HCH   H   G+ +VF V  G+   Q V++P
Sbjct:   503 PPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMVFLVENGEGHLQSVQSP 562

Query:    97 P-HFPQC 102
             P   PQC
Sbjct:   563 PLDLPQC 569

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046274 "lignin catabolic process" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2150139 LAC10 "laccase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query:    40 PIVKDTVGNLPSG-YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK---QFVRA 95
             P+ ++TVG +PSG +  +R   +NPG+W+ HCH  +HT  G+ + F V + K   Q +R 
Sbjct:   492 PVERNTVG-VPSGGWAAIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSIRP 550

Query:    96 PPH-FPQC 102
             PP   P+C
Sbjct:   551 PPSDLPKC 558

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046274 "lignin catabolic process" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2184802 LAC14 "laccase 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 31/80 (38%), Positives = 38/80 (47%)

Query:    27 DQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
             D+    LR     P  + TVG   +G+T VR   NNPG+W  HCH   H   GM  VF V
Sbjct:   490 DRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTVFIV 549

Query:    87 GD----RKQFVRAPPHFPQC 102
              D      + V+ PP  P C
Sbjct:   550 KDGPTKSSRMVKPPPDLPSC 569

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046274 "lignin catabolic process" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2042842 IRX12 "IRREGULAR XYLEM 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query:    40 PIVKDTVGNLPSG-YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK---QFVRA 95
             P+ ++T+G +PSG + V+R   +NPG+W+ HCH  +HT  G+ + F V + K   Q +  
Sbjct:   492 PVERNTIG-VPSGGWVVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSILP 550

Query:    96 PPH-FPQC 102
             PP   P+C
Sbjct:   551 PPKDLPKC 558

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;IMP

GO:0046274 "lignin catabolic process" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2135242 AT4G39830 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query:    27 DQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
             + E P+ R  +  PI K+TV   P G+T +R   +NPG+W FHCH   H   GM +VF+ 
Sbjct:   504 ESEDPK-RYNRVDPIKKNTVAVQPFGWTALRFRADNPGVWSFHCHIESHFFMGMGIVFES 562

Query:    87 G 87
             G
Sbjct:   563 G 563

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
pfam07731	135	pfam07731, Cu-oxidase_2, Multicopper oxidase	3e-14
TIGR03389	539	TIGR03389, laccase, laccase, plant	3e-10
PLN02604	566	PLN02604, PLN02604, oxidoreductase	8e-10
TIGR03388	541	TIGR03388, ascorbase, L-ascorbate oxidase, plant t	3e-09
COG2132	451	COG2132, SufI, Putative multicopper oxidases [Seco	2e-08
PLN02191	574	PLN02191, PLN02191, L-ascorbate oxidase	4e-08
TIGR03390	538	TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fu	2e-07
PRK10965	523	PRK10965, PRK10965, multicopper oxidase; Provision	6e-05
TIGR01480	587	TIGR01480, copper_res_A, copper-resistance protein	2e-04

>gnl|CDD|219541 pfam07731, Cu-oxidase_2, Multicopper oxidase

 Score = 64.0 bits (156), Expect = 3e-14
 Identities = 21/49 (42%), Positives = 27/49 (55%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
           P+ +DTV   P G+  +R   +NPG W FHCH + H D GM   F V  
Sbjct: 85  PVRRDTVQVPPGGWVAIRFKADNPGPWLFHCHILWHLDQGMMGQFVVDP 133

This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. Length = 135

>gnl|CDD|234194 TIGR03389, laccase, laccase, plant

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK---QFVRAP 96
           P  ++TVG    G+  +R   +NPG+W+ HCH  +HT  G+ + F V + K   Q +  P
Sbjct: 473 PPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPP 532

Query: 97  PH-FPQC 102
           P   P C
Sbjct: 533 PSDLPSC 539

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. Length = 539

>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase

 Score = 54.5 bits (131), Expect = 8e-10
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87
           PI+K+TV   P G+T +R   +NPG+W FHCH   H   GM +VF+ G
Sbjct: 500 PIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG 547

Length = 566

>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 39  RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87
            P +++TV   P G+T +R   +NPG+W FHCH   H   GM +VF  G
Sbjct: 476 NPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG 524

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. Length = 541

>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 21/50 (42%), Positives = 24/50 (48%)

Query: 39  RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
            P  KDTV   P    +VR   + PG W FHCH + H D GM   F V  
Sbjct: 401 APGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450

Length = 451

>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 20/48 (41%), Positives = 29/48 (60%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87
           P +++T    P G+T +R   +NPG+W+FHCH   H   GM +VF  G
Sbjct: 500 PPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEG 547

Length = 574

>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 32  RLRTTQPRPIVKDT----------VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMT 81
           +L    P  +++DT          V   P+G+   R+   NPG+W  HCH + H   GM 
Sbjct: 469 KLENYTP--VLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQ 526

Query: 82  LVFQVGDRKQFV 93
            V+  GD +  V
Sbjct: 527 TVWVFGDAEDIV 538

This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized. Length = 538

>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 43  KDTVGNLPSGYTVVRVHFNNPG----MWYFHCHFVMHTDTGMTLVFQV 86
           KDTV  +  G + V V F++       +  HCH + H DTGM L F V
Sbjct: 476 KDTV-RVEGGRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522

Length = 523

>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 37  QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
           Q R   K TV   P G    RV  +  G W +HCH ++H + GM     V
Sbjct: 540 QVR---KHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]. Length = 587

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PLN02835	539	oxidoreductase	99.91
TIGR03388	541	ascorbase L-ascorbate oxidase, plant type. Members	99.91
TIGR03389	539	laccase laccase, plant. Members of this protein fa	99.91
PLN02604	566	oxidoreductase	99.9
PLN02191	574	L-ascorbate oxidase	99.9
PLN02792	536	oxidoreductase	99.89
PLN02991	543	oxidoreductase	99.89
PLN02168	545	copper ion binding / pectinesterase	99.88
PLN02354	552	copper ion binding / oxidoreductase	99.88
PLN00044	596	multi-copper oxidase-related protein; Provisional	99.88
KOG1263|consensus	563		99.87
PF07731	138	Cu-oxidase_2: Multicopper oxidase; InterPro: IPR01	99.81
TIGR03390	538	ascorbOXfungal L-ascorbate oxidase, fungal type. T	99.79
TIGR01480	587	copper_res_A copper-resistance protein, CopA famil	99.3
PRK10883	471	FtsI repressor; Provisional	99.28
PRK10965	523	multicopper oxidase; Provisional	99.26
COG2132	451	SufI Putative multicopper oxidases [Secondary meta	99.24
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	98.63
PLN02604	566	oxidoreductase	98.03
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	97.94
TIGR03388	541	ascorbase L-ascorbate oxidase, plant type. Members	97.48
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	97.37
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	97.27
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	97.24
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	96.82
PLN02191	574	L-ascorbate oxidase	96.66
COG4454	158	Uncharacterized copper-binding protein [Inorganic	96.34
TIGR01480	587	copper_res_A copper-resistance protein, CopA famil	96.14
PLN02168	545	copper ion binding / pectinesterase	95.49
TIGR03389	539	laccase laccase, plant. Members of this protein fa	95.45
PLN02354	552	copper ion binding / oxidoreductase	95.38
PLN02835	539	oxidoreductase	95.32
KOG1263|consensus	563		95.32
PLN00044	596	multi-copper oxidase-related protein; Provisional	94.87
PRK02710	119	plastocyanin; Provisional	94.78
PLN02792	536	oxidoreductase	94.58
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	94.45
PF00394	159	Cu-oxidase: Multicopper oxidase; InterPro: IPR0011	94.32
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	94.21
PRK10965	523	multicopper oxidase; Provisional	94.07
PRK02888	635	nitrous-oxide reductase; Validated	93.93
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	93.91
PLN02991	543	oxidoreductase	93.56
PRK10883	471	FtsI repressor; Provisional	93.52
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	91.84
TIGR03390	538	ascorbOXfungal L-ascorbate oxidase, fungal type. T	90.92
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	85.03
TIGR02657	83	amicyanin amicyanin. Members of this family are am	83.59
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	80.93
COG3794	128	PetE Plastocyanin [Energy production and conversio	80.1

>PLN02835 oxidoreductase

Probab=99.91  E-value=7.7e-25  Score=187.49  Aligned_cols=90  Identities=16%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..           ..    ...+|+.||++|||+.|++++|++|||+|||||.|+||||+.+|+..||
T Consensus       442 F~Vlg~G~-g~~~~-----------~~----~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm  505 (539)
T PLN02835        442 FWVVGYGS-GQWTP-----------AK----RSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQ  505 (539)
T ss_pred             EEEEeccC-CCCCc-----------cc----ccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhccc
Confidence            89999997 44431           11    1146899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecc----CccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGDR----KQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~~----~~~~~~p~~~~~C~~~~  106 (123)
                      +++|+|++.    ++++++|++++.||..+
T Consensus       506 ~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~  535 (539)
T PLN02835        506 QFYLRVWNQVHSLANEYDIPDNALLCGKAI  535 (539)
T ss_pred             EEEEEEccCCCccccccCCCccccccccCc
Confidence            999999754    68889999999998654

>TIGR03388 ascorbase L-ascorbate oxidase, plant type

Probab=99.91  E-value=1.7e-24  Score=185.06  Aligned_cols=87  Identities=30%  Similarity=0.560  Sum_probs=76.4

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. +.|..    +      .+    ...+|++||++|||+.|++++|++|||++||||.|+||||+.+|+..||
T Consensus       453 F~vlg~g~-g~~~~----~------~~----~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM  517 (541)
T TIGR03388       453 FWVLGYGE-GKFRP----G------VD----EKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGM  517 (541)
T ss_pred             eEEEeecc-CCCCc----c------cC----cccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhccc
Confidence            89999997 34431    1      11    1258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCccCCCCCCCCCCc
Q psy9698          81 TLVFQVGDRKQFVRAPPHFPQCD  103 (123)
Q Consensus        81 ~~~~~V~~~~~~~~~p~~~~~C~  103 (123)
                      +++|.++ .++++++|+++++|+
T Consensus       518 ~~~~~e~-~~~~~~~P~~~~~C~  539 (541)
T TIGR03388       518 GVVFAEG-VEKVGKLPKEALGCG  539 (541)
T ss_pred             EEEEecc-ccccCCCCccccCCC
Confidence            9999987 578999999999997

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.

>TIGR03389 laccase laccase, plant

Probab=99.91  E-value=3.4e-24  Score=183.08  Aligned_cols=87  Identities=26%  Similarity=0.625  Sum_probs=74.7

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. +.|..    +      .+    ...+|+.||++|||+.|++++|++|||++||||.|+||||+.+|+..||
T Consensus       449 F~Vlg~g~-g~~~~----~------~~----~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm  513 (539)
T TIGR03389       449 FFVVGTGF-GNFDP----K------KD----PAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGL  513 (539)
T ss_pred             eEEEEecc-CCCCc----c------cC----ccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcc
Confidence            89999997 44431    0      11    1258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeec----cCccCCCCCCCCCC
Q psy9698          81 TLVFQVGD----RKQFVRAPPHFPQC  102 (123)
Q Consensus        81 ~~~~~V~~----~~~~~~~p~~~~~C  102 (123)
                      +++|.+.+    .++++++|+++|+|
T Consensus       514 ~~~~~~~~~~~~~~~~~~~p~~~~~c  539 (539)
T TIGR03389       514 KMAFLVDNGKGPNQSLLPPPSDLPSC  539 (539)
T ss_pred             eEEEEEccCCCCccccCCCCccCCCC
Confidence            99998853    35789999999999

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.

>PLN02604 oxidoreductase

Probab=99.90  E-value=2.9e-24  Score=184.64  Aligned_cols=89  Identities=31%  Similarity=0.555  Sum_probs=77.5

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..    +      .+    ...+|+.||++|||+.|++++|++|||++||||.|+|||||.+|+..||
T Consensus       476 F~Vlg~G~-G~~~~----~------~~----~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM  540 (566)
T PLN02604        476 FWVLGYGE-GKFNM----S------SD----PKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGM  540 (566)
T ss_pred             eEEEEecC-CCCCc----c------cc----ccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCC
Confidence            89999997 34431    1      11    1258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCccCCCCCCCCCCccC
Q psy9698          81 TLVFQVGDRKQFVRAPPHFPQCDNF  105 (123)
Q Consensus        81 ~~~~~V~~~~~~~~~p~~~~~C~~~  105 (123)
                      +++|.++ +++++++|..+++|+..
T Consensus       541 ~~v~~e~-~~~~~~~p~~~~~C~~~  564 (566)
T PLN02604        541 GVVFEEG-IERVGKLPSSIMGCGES  564 (566)
T ss_pred             EEEEeeC-hhhccCCCCCcCccccC
Confidence            9999987 67999999999999854

>PLN02191 L-ascorbate oxidase

Probab=99.90  E-value=2.2e-24  Score=185.75  Aligned_cols=90  Identities=28%  Similarity=0.539  Sum_probs=77.9

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..    ++      +..    .+|+.||++|||+.|++++|++|||++||||.|+||||+.+|+..||
T Consensus       476 F~Vlg~G~-g~~~~----~~------~~~----~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm  540 (574)
T PLN02191        476 FWVLGYGD-GKFKP----GI------DEK----TYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGM  540 (574)
T ss_pred             eEEEEecC-CCCCc----cc------Ccc----cccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCC
Confidence            89999998 44431    11      111    48999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGDRKQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~~~~~~~~p~~~~~C~~~~  106 (123)
                      ..+|..+ .+.++++|.+++.|+.|+
T Consensus       541 ~~~~~e~-~~~~~~~p~~~~~C~~~~  565 (574)
T PLN02191        541 GVVFAEG-LNRIGKIPDEALGCGLTK  565 (574)
T ss_pred             EEEEecC-hhhccCCCcchhhhhccc
Confidence            9999876 578888999999999886

>PLN02792 oxidoreductase

Probab=99.89  E-value=2.1e-23  Score=178.68  Aligned_cols=90  Identities=19%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..           .++    ..||+.||++|||+.|++++|++|||++||||+|+||||+..|+..||
T Consensus       434 F~Vvg~G~-G~~~~-----------~~~----~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm  497 (536)
T PLN02792        434 FWVVGINK-GIWSR-----------ASR----REYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQ  497 (536)
T ss_pred             eEEEeecC-CCCCc-----------ccc----cccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccce
Confidence            89999998 45531           112    258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeec----cCccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGD----RKQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~----~~~~~~~p~~~~~C~~~~  106 (123)
                      +.+|.|.+    .+.++++|++++.||..+
T Consensus       498 ~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~  527 (536)
T PLN02792        498 QFYLRVYSPTHSLKDEYPLPKNALLCGRAS  527 (536)
T ss_pred             EEEEEEccCCCccccccCCCcccCcccccc
Confidence            99998863    257889999999998554

>PLN02991 oxidoreductase

Probab=99.89  E-value=3.2e-23  Score=177.81  Aligned_cols=90  Identities=16%  Similarity=0.221  Sum_probs=76.7

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..           .++    ..+|+.||++|||+.|++++|++|||++||||.|+||||+..|+..||
T Consensus       441 F~Vvg~G~-G~f~~-----------~~~----~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm  504 (543)
T PLN02991        441 FYVVGMEL-GKWSA-----------ASR----KVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQ  504 (543)
T ss_pred             eEEEEeCC-CCCCc-----------ccc----cccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccE
Confidence            89999997 45531           111    248999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeec----cCccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGD----RKQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~----~~~~~~~p~~~~~C~~~~  106 (123)
                      +.+++|.+    .++++++|++++.||..+
T Consensus       505 ~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~  534 (543)
T PLN02991        505 QFYMRVYTTSTSLRDEYLIPKNALLCGRAT  534 (543)
T ss_pred             EEEEEecCCCCccccccCCCcccCccccCC
Confidence            99998853    257889999999997443

>PLN02168 copper ion binding / pectinesterase

Probab=99.88  E-value=6.3e-23  Score=176.03  Aligned_cols=87  Identities=16%  Similarity=0.277  Sum_probs=73.6

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. +.|..           .++    ..+|+.||++|||+.|++++|++|||+|||||.|+||||+..|+..||
T Consensus       446 F~Vvg~g~-g~~~~-----------~~~----~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~  509 (545)
T PLN02168        446 FFVVGYGF-GAWSE-----------SKK----AGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQ  509 (545)
T ss_pred             eEEEECCC-CCCCc-----------ccc----ccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecC
Confidence            89999997 45541           111    248999999999999999999999999999999999999999999999


Q ss_pred             eEEEEee----------ccCccCCCCCCCCCCc
Q psy9698          81 TLVFQVG----------DRKQFVRAPPHFPQCD  103 (123)
Q Consensus        81 ~~~~~V~----------~~~~~~~~p~~~~~C~  103 (123)
                      .+.+.|.          ..+.++++|+++++||
T Consensus       510 gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg  542 (545)
T PLN02168        510 ELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCG  542 (545)
T ss_pred             cEEEEEEcccccCccccccccccCCChhhcccc
Confidence            9888773          1246778999999997

>PLN02354 copper ion binding / oxidoreductase

Probab=99.88  E-value=9.5e-23  Score=175.09  Aligned_cols=90  Identities=16%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. +.|..           .+    ..++|+.||++|||+.|+++||++|||++||||+|+||||+..|+..||
T Consensus       449 F~Vlg~G~-G~~~~-----------~~----~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~  512 (552)
T PLN02354        449 FFAVAVEP-GTWTP-----------EK----RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQ  512 (552)
T ss_pred             EEEEeecC-CCCCc-----------cc----cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccc
Confidence            89999998 44431           11    1258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecc----CccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGDR----KQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~~----~~~~~~p~~~~~C~~~~  106 (123)
                      ...+.|.+.    .+++++|++.+.|+..+
T Consensus       513 ~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~  542 (552)
T PLN02354        513 QLYASVLSPERSLRDEYNMPENALLCGKVK  542 (552)
T ss_pred             eEEEEEeCCccccCcCCCCCcccccccccc
Confidence            999987532    34556899999998654

>PLN00044 multi-copper oxidase-related protein; Provisional

Probab=99.88  E-value=6.3e-23  Score=177.50  Aligned_cols=90  Identities=16%  Similarity=0.276  Sum_probs=77.7

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..           .+    ...||++||++|||+.|++++|++|||++||||.|+||||+..|+..||
T Consensus       464 F~Vvg~G~-G~~~~-----------~~----~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm  527 (596)
T PLN00044        464 FFVVGMDY-GLWTD-----------NS----RGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQ  527 (596)
T ss_pred             EEEEeecC-CCCCC-----------Cc----ccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccC
Confidence            89999998 56541           12    2258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeec-----cCccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGD-----RKQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~-----~~~~~~~p~~~~~C~~~~  106 (123)
                      ..+|.|.+     .+.++++|++++.||..+
T Consensus       528 ~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~  558 (596)
T PLN00044        528 EVYINVVNPEDNSNKTVLPIPDNAIFCGALS  558 (596)
T ss_pred             cEEEEEecCCCCccccccCCCcccCcccccc
Confidence            99998752     247888999999998664

>KOG1263|consensus

Probab=99.87  E-value=2e-22  Score=173.37  Aligned_cols=92  Identities=32%  Similarity=0.585  Sum_probs=79.0

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|.+ .         .|+   ...||+.+|+.||||.|+||+|++|||.|||||+|++|||+.+|+..||
T Consensus       464 F~Vvg~g~-G~~~~-~---------~d~---~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~  529 (563)
T KOG1263|consen  464 FYVVGYGF-GNWDP-A---------KDP---RKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGM  529 (563)
T ss_pred             EEEEEecc-cccCc-C---------cCh---hhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccC
Confidence            89999988 56652 1         022   1368999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecc----CccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGDR----KQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~~----~~~~~~p~~~~~C~~~~  106 (123)
                      ..+|.|.+.    ..+.++|.+.++||.-+
T Consensus       530 ~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~  559 (563)
T KOG1263|consen  530 ETVFIVGNGEESLSSEYPPPKNLPKCGRAS  559 (563)
T ss_pred             eEEEEEeCCCccCCcCCCCCCCcccccccC
Confidence            999999743    35668999999999875

>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=99.81  E-value=4.6e-20  Score=130.68  Aligned_cols=57  Identities=42%  Similarity=0.767  Sum_probs=53.0

Q ss_pred             ccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          32 RLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        32 ~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      ...+++.+|.+|||+.|+++++++|||.++|||.|++|||+++|++.||++.|.|.+
T Consensus        80 ~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~  136 (138)
T PF07731_consen   80 TQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGP  136 (138)
T ss_dssp             GGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred             ccccccccCcccccccccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence            446889999999999999999999999999999999999999999999999999974

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....

>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type

Probab=99.79  E-value=8.7e-20  Score=156.25  Aligned_cols=75  Identities=28%  Similarity=0.595  Sum_probs=62.7

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeC----------CCCEEEEEEEecCCceEEEee
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNL----------PSGYTVVRVHFNNPGMWYFHC   70 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~----------pg~~~~irf~adnpG~Wl~HC   70 (123)
                      |||||+|. +.|..    +.++          ..+|+.||++|||+.|+          |++|++|||++||||.|+|||
T Consensus       451 F~vlg~G~-G~~~~----~~~~----------~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HC  515 (538)
T TIGR03390       451 FYDIGGGD-GEYNA----TANE----------AKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHC  515 (538)
T ss_pred             EEEEcccc-cccCC----ccCh----------hhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEec
Confidence            89999997 34431    1111          14688999999999996          899999999999999999999


Q ss_pred             cCccccccCceEEEEeeccC
Q psy9698          71 HFVMHTDTGMTLVFQVGDRK   90 (123)
Q Consensus        71 Hi~~H~~~GM~~~~~V~~~~   90 (123)
                      ||.+|+..||+++|.|.+.+
T Consensus       516 Hi~~H~~~Gm~~~~~~~~~~  535 (538)
T TIGR03390       516 HILQHMVMGMQTVWVFGDAE  535 (538)
T ss_pred             cchhhhhccceEEEEeCChH
Confidence            99999999999999997543

This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.

>TIGR01480 copper_res_A copper-resistance protein, CopA family

Probab=99.30  E-value=2.1e-12  Score=112.09  Aligned_cols=47  Identities=34%  Similarity=0.646  Sum_probs=45.4

Q ss_pred             CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ++++||+.|+||++.+++|.++|||.|+||||++.|++.||++.|.|
T Consensus       540 ~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v  586 (587)
T TIGR01480       540 QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV  586 (587)
T ss_pred             cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence            57889999999999999999999999999999999999999999987

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.

>PRK10883 FtsI repressor; Provisional

Probab=99.28  E-value=3.4e-12  Score=108.14  Aligned_cols=45  Identities=27%  Similarity=0.209  Sum_probs=41.4

Q ss_pred             ceeeeEEeCCCCEEEEEEEecCCc----eEEEeecCccccccCceEEEEee
Q psy9698          41 IVKDTVGNLPSGYTVVRVHFNNPG----MWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~adnpG----~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .|||||.|+  +.++|+++++++|    .|||||||++|++.|||+.|.|.
T Consensus       420 gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~  468 (471)
T PRK10883        420 GWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVN  468 (471)
T ss_pred             CcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEe
Confidence            689999995  4699999999887    89999999999999999999995

>PRK10965 multicopper oxidase; Provisional

Probab=99.26  E-value=6.6e-12  Score=107.71  Aligned_cols=46  Identities=41%  Similarity=0.564  Sum_probs=39.9

Q ss_pred             CceeeeEEeCCCCEEEEEEEec----CCceEEEeecCccccccCceEEEEe
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~ad----npG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +.|||||.|+| +.++|+++++    ++|.|+||||+++|++.|||+.|.|
T Consensus       473 ~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V  522 (523)
T PRK10965        473 AGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV  522 (523)
T ss_pred             cccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence            46899999988 6677776664    5779999999999999999999987

>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.24  E-value=8.8e-12  Score=104.48  Aligned_cols=50  Identities=42%  Similarity=0.653  Sum_probs=47.5

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+.||||+.+.|++..+++|.+++||.|+||||+++|++.||+..+.|.
T Consensus       400 ~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~  449 (451)
T COG2132         400 AAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV  449 (451)
T ss_pred             ccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence            45789999999999999999999999999999999999999999999885

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=98.63  E-value=5.1e-08  Score=78.90  Aligned_cols=55  Identities=20%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeec----CccccccCceEEEEeeccCccCCCCCCC
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCH----FVMHTDTGMTLVFQVGDRKQFVRAPPHF   99 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCH----i~~H~~~GM~~~~~V~~~~~~~~~p~~~   99 (123)
                      +..|+||++.+++|.+++||.|+||||    +..|...||++.|.|.+.+..++...++
T Consensus        99 ~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~~~d~e~  157 (311)
T TIGR02376        99 LTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLPEYDKEY  157 (311)
T ss_pred             ceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCcCcceeE
Confidence            456999999999999999999999999    4679999999999998654444433333

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PLN02604 oxidoreductase

Probab=98.03  E-value=6.5e-06  Score=71.47  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ...|+||+..+++|.++++|.|.||||...|...||.+.|.|.+.
T Consensus       101 q~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~  145 (566)
T PLN02604        101 QCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLP  145 (566)
T ss_pred             cCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEec
Confidence            447899999999999999999999999999999999999999754

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=97.94  E-value=2.1e-05  Score=55.33  Aligned_cols=43  Identities=16%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             EEeCCCCEEEEEEEecC-CceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNN-PGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adn-pG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      -.|.||+..+.+|.++. +|.+.||||...|...||.+.|.|.+
T Consensus        72 ~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~  115 (117)
T PF07732_consen   72 CPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEP  115 (117)
T ss_dssp             SSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-
T ss_pred             eeEEeecceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcC
Confidence            35889999999999998 99999999999987899999999974

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

>TIGR03388 ascorbase L-ascorbate oxidase, plant type

Probab=97.48  E-value=0.00019  Score=62.04  Aligned_cols=44  Identities=18%  Similarity=0.371  Sum_probs=40.9

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||+..+.+|.++.+|.|.||||...|...||.+.|.|.+.
T Consensus        79 ~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~  122 (541)
T TIGR03388        79 CAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVP  122 (541)
T ss_pred             CCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecC
Confidence            46899999999999999999999999999999999999999754

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=97.37  E-value=0.00038  Score=56.38  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=42.1

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~   87 (123)
                      .|++.|.||+.+.|.++++.||.|.+|||...|. ..|+.+++.|.
T Consensus       251 ~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~  296 (311)
T TIGR02376       251 VETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVE  296 (311)
T ss_pred             cceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence            7999999999999999999999999999999887 77999999885

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>TIGR03095 rusti_cyanin rusticyanin

Probab=97.27  E-value=0.00039  Score=50.97  Aligned_cols=34  Identities=29%  Similarity=0.637  Sum_probs=31.3

Q ss_pred             EEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          53 YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        53 ~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +..+.|.++.||.+.||||+..|...||.+.+.|
T Consensus       114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV  147 (148)
T TIGR03095       114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV  147 (148)
T ss_pred             eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence            4688888899999999999999999999999987

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR02656 cyanin_plasto plastocyanin

Probab=97.24  E-value=0.00057  Score=46.41  Aligned_cols=40  Identities=28%  Similarity=0.393  Sum_probs=35.1

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +++.+.||+...+.|..  ||.+.|+|.  .|..+||.+.+.|.
T Consensus        60 ~~~~~~pG~t~~~tF~~--~G~y~y~C~--~H~~aGM~G~I~V~   99 (99)
T TIGR02656        60 KDLLNSPGESYEVTFST--PGTYTFYCE--PHRGAGMVGKITVE   99 (99)
T ss_pred             cccccCCCCEEEEEeCC--CEEEEEEcC--CccccCCEEEEEEC
Confidence            56778899999887775  999999998  89999999999873

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=96.82  E-value=0.0055  Score=41.40  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .+..+.||+...+.|.  .||.+.|+|- - |...||.+.+.|.
T Consensus        60 ~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V~   99 (99)
T PF00127_consen   60 SSPLLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIVE   99 (99)
T ss_dssp             EEEEBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred             cceecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence            5677889999888877  9999999999 4 9999999999873

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>PLN02191 L-ascorbate oxidase

Probab=96.66  E-value=0.0029  Score=55.30  Aligned_cols=43  Identities=19%  Similarity=0.350  Sum_probs=40.1

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      ..|+||+..+.+|.++.+|.+.||||...+...||.+.+.|.+
T Consensus       101 ~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~  143 (574)
T PLN02191        101 CAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDV  143 (574)
T ss_pred             CCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEcc
Confidence            4689999999999999999999999999999999999999963

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=96.34  E-value=0.012  Score=43.88  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             eeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      -..++.+.||....+-+.+.+||.+-+-|-+..|.+.||.+.|.|.
T Consensus       112 ~~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~  157 (158)
T COG4454         112 DPNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS  157 (158)
T ss_pred             CcceeEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence            4578999999999999999999999999999999999999999885

>TIGR01480 copper_res_A copper-resistance protein, CopA family

Probab=96.14  E-value=0.009  Score=52.52  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=39.7

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      -.|+||+..+.+|.+..+|.+.||||...+...||.+.|.|.+
T Consensus       120 ~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~  162 (587)
T TIGR01480       120 AGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDP  162 (587)
T ss_pred             cccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECC
Confidence            3688999999999999999999999999899999999999974

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.

>PLN02168 copper ion binding / pectinesterase

Probab=95.49  E-value=0.024  Score=49.49  Aligned_cols=44  Identities=11%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||++.+.+|.+ +.+|.+.||+|...+...||.+.+.|.+.
T Consensus       102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~  146 (545)
T PLN02168        102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNP  146 (545)
T ss_pred             CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCC
Confidence            469999999999999 58999999999999999999999999754

>TIGR03389 laccase laccase, plant

Probab=95.45  E-value=0.027  Score=48.77  Aligned_cols=43  Identities=12%  Similarity=0.149  Sum_probs=36.9

Q ss_pred             EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||+..+.+|.+ +.+|.+.||||.. +...||.+.+.|.+.
T Consensus        80 ~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~-~~~~Gl~G~lIV~~~  123 (539)
T TIGR03389        80 CPIQPGQSYVYNFTITGQRGTLWWHAHIS-WLRATVYGAIVILPK  123 (539)
T ss_pred             CCcCCCCeEEEEEEecCCCeeEEEecCch-hhhccceEEEEEcCC
Confidence            368899999999998 5899999999985 456799999999753

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.

>PLN02354 copper ion binding / oxidoreductase

Probab=95.38  E-value=0.025  Score=49.42  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ...|+||++.+.+|.+ +.+|.+-||+|...+...||.+.+.|.+.
T Consensus       102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~  147 (552)
T PLN02354        102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSR  147 (552)
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCC
Confidence            4569999999999998 57999999999999999999999999754

>PLN02835 oxidoreductase

Probab=95.32  E-value=0.032  Score=48.51  Aligned_cols=43  Identities=12%  Similarity=0.136  Sum_probs=39.0

Q ss_pred             EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      ..|+||++.+.+|.+ +.+|.+.||||...+...||.+.+.|.+
T Consensus       105 ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~  148 (539)
T PLN02835        105 CPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYE  148 (539)
T ss_pred             CCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeC
Confidence            458999999999986 6799999999999999999999999963

>KOG1263|consensus

Probab=95.32  E-value=0.039  Score=48.45  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=42.8

Q ss_pred             eEEeCCCCEEEEEEEec-CCceEEEeecCccccccCceEEEEeeccCccC
Q psy9698          45 TVGNLPSGYTVVRVHFN-NPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV   93 (123)
Q Consensus        45 Tv~v~pg~~~~irf~ad-npG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~   93 (123)
                      .-.|+||+..+-+|..+ ..|.+.||.|..+|.+.|+.+.|.|.+...++
T Consensus       103 qCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p  152 (563)
T KOG1263|consen  103 QCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP  152 (563)
T ss_pred             cCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC
Confidence            34788999999999997 89999999999999999999999997554333

>PLN00044 multi-copper oxidase-related protein; Provisional

Probab=94.87  E-value=0.046  Score=48.28  Aligned_cols=45  Identities=9%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ...|+||+..+.+|.+ +.+|.+-||+|...+...||.+.|.|.+.
T Consensus       104 QcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~  149 (596)
T PLN00044        104 NCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNR  149 (596)
T ss_pred             cCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCc
Confidence            5678999999999999 58999999999999999999999999754

>PRK02710 plastocyanin; Provisional

Probab=94.78  E-value=0.062  Score=37.61  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ..+.||+..++.|..  ||.+.|+|-  .|...||.+.+.|
T Consensus        82 ~~~~pg~t~~~tF~~--~G~y~y~C~--~H~~~gM~G~I~V  118 (119)
T PRK02710         82 LAFAPGESWEETFSE--AGTYTYYCE--PHRGAGMVGKITV  118 (119)
T ss_pred             cccCCCCEEEEEecC--CEEEEEEcC--CCccCCcEEEEEE
Confidence            346788888877775  999999997  8999999999987

>PLN02792 oxidoreductase

Probab=94.58  E-value=0.052  Score=47.26  Aligned_cols=44  Identities=9%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeec
Q psy9698          45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +..|+||+..+.+|.+ +.+|.+.||||...+...||.+.+.|.+
T Consensus        91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~  135 (536)
T PLN02792         91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYS  135 (536)
T ss_pred             cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeC
Confidence            4568999999999998 5799999999999999999999887753

>TIGR02375 pseudoazurin pseudoazurin

Probab=94.45  E-value=0.087  Score=37.20  Aligned_cols=32  Identities=31%  Similarity=0.544  Sum_probs=27.9

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.+.++.||.+-|+|-  .|...||.+.+.|++
T Consensus        57 ~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~   88 (116)
T TIGR02375        57 EYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD   88 (116)
T ss_pred             EEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence            35555579999999999  999999999999985

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=94.32  E-value=0.12  Score=37.48  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=39.9

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecC-CceEEEee----cCccccccCceEEEEe
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNN-PGMWYFHC----HFVMHTDTGMTLVFQV   86 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adn-pG~Wl~HC----Hi~~H~~~GM~~~~~V   86 (123)
                      .|...|++.|.||+.+.+.++++. +|.|.+++    +...+...|+...+++
T Consensus       103 ~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~  155 (159)
T PF00394_consen  103 EPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILR  155 (159)
T ss_dssp             EEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEE
T ss_pred             cccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEE
Confidence            488999999999999999999998 99999999    4556677788766654

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=94.21  E-value=0.099  Score=35.30  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=21.4

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccc
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMH   75 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H   75 (123)
                      ..+.||+..++.|.++.||.+-|+|-+..+
T Consensus        68 ~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~   97 (104)
T PF13473_consen   68 KVLPPGETATVTFTPLKPGEYEFYCTMHPN   97 (104)
T ss_dssp             EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred             EEECCCCEEEEEEcCCCCEEEEEEcCCCCc
Confidence            677899999999999999999999996554

>PRK10965 multicopper oxidase; Provisional

Probab=94.07  E-value=0.092  Score=45.58  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             EEeCCCCEEEEEEEecC-CceEEEeecC----ccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNN-PGMWYFHCHF----VMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adn-pG~Wl~HCHi----~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||+..+.+|.++. +|.+-||||.    ..+...||.+.+.|.+.
T Consensus       118 ~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~  166 (523)
T PRK10965        118 GIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDD  166 (523)
T ss_pred             CCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCc
Confidence            46889999999999986 6999999996    56788999999999754

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.93  E-value=0.14  Score=45.63  Aligned_cols=44  Identities=18%  Similarity=0.391  Sum_probs=37.0

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG   87 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~   87 (123)
                      --+.+.||....+.|.++.||.|.++|....|. ..+|.+.+.|.
T Consensus       589 I~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVe  633 (635)
T PRK02888        589 VNMEVAPQATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVE  633 (635)
T ss_pred             ccEEEcCCceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEE
Confidence            346777999999999999999999999985553 35899998886

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=93.91  E-value=0.09  Score=38.29  Aligned_cols=29  Identities=7%  Similarity=0.170  Sum_probs=25.9

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCc
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFV   73 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~   73 (123)
                      ...|+||+..+++|.++.||.+.|||.+-
T Consensus        93 s~~I~pGet~TitF~adKpG~Y~y~C~~H  121 (135)
T TIGR03096        93 SEVIKAGETKTISFKADKAGAFTIWCQLH  121 (135)
T ss_pred             ceEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence            45688999999999999999999999753

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>PLN02991 oxidoreductase

Probab=93.56  E-value=0.13  Score=44.99  Aligned_cols=45  Identities=16%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             eEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          45 TVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        45 Tv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ...|+||+..+.+|.+ +.+|.+-||+|...+...|+.+.+.|.+.
T Consensus       103 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~  148 (543)
T PLN02991        103 TCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSR  148 (543)
T ss_pred             CCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCC
Confidence            3568999999999999 58999999999988888999999999753

>PRK10883 FtsI repressor; Provisional

Probab=93.52  E-value=0.17  Score=43.34  Aligned_cols=43  Identities=14%  Similarity=0.191  Sum_probs=36.1

Q ss_pred             EeCCCCEEEEEEEecC-CceEEEeecCcc----ccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNN-PGMWYFHCHFVM----HTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adn-pG~Wl~HCHi~~----H~~~GM~~~~~V~~~   89 (123)
                      .|+||+....+|..+. +|.+.||+|...    +...||.+.+.|.+.
T Consensus       119 ~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~  166 (471)
T PRK10883        119 MMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDE  166 (471)
T ss_pred             cCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCC
Confidence            4789999999998764 899999999654    556899999999754

>TIGR03102 halo_cynanin halocyanin domain

Probab=91.84  E-value=0.34  Score=34.16  Aligned_cols=30  Identities=27%  Similarity=0.545  Sum_probs=25.3

Q ss_pred             EEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          56 VRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        56 irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +.+.++.||.+.|+|-  .|...||.+.+.|+
T Consensus        86 ~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~  115 (115)
T TIGR03102        86 YEHTFEEPGIYLYVCV--PHEALGMKGAVVVE  115 (115)
T ss_pred             EEEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence            4445578999999998  89999999999884

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type

Probab=90.92  E-value=0.44  Score=41.42  Aligned_cols=42  Identities=14%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             EeCCCCEEEEEEEec--CCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFN--NPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~ad--npG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.++  .+|.+.||||..... .||.+.+.|.+.
T Consensus        87 pI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~-~~l~G~lIV~~~  130 (538)
T TIGR03390        87 PIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQA-VTAFGPLIVEDC  130 (538)
T ss_pred             CCCCCCcEEEEEEecCCCCeeeEEecCCchhh-hcceeEEEEccC
Confidence            588999999999973  799999999986654 479999999753

This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=85.03  E-value=2.3  Score=32.88  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=36.1

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .|.+|.....-+..-.||.+.+=|-+.-|...||-..+.|.+
T Consensus       146 GI~~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~  187 (196)
T PF06525_consen  146 GISSGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS  187 (196)
T ss_pred             CccCCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence            455777777777777899999999999999999999999974

The most closely related proteins characterised as functionally different are the rusticyanins.

>TIGR02657 amicyanin amicyanin

Probab=83.59  E-value=2.4  Score=27.48  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=23.6

Q ss_pred             eCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          48 NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        48 v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +.++...+  +.++.||.+.|||-+-.    +|.+.+.|
T Consensus        50 ~~~g~~~~--~tf~~~G~y~y~C~~Hp----~M~G~v~V   82 (83)
T TIGR02657        50 MKKEQAYS--LTFTEAGTYDYHCTPHP----FMRGKVVV   82 (83)
T ss_pred             cCCCCEEE--EECCCCEEEEEEcCCCC----CCeEEEEE
Confidence            34555544  55678999999998633    48888876

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=80.93  E-value=4.2  Score=31.34  Aligned_cols=42  Identities=19%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.+|....+-+..-.||.+.+=|-+.-|...||-+.+.|..
T Consensus       145 Gi~~Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs  186 (195)
T TIGR03094       145 GISSGHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS  186 (195)
T ss_pred             cccccceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence            344677777777778999999999999999999999999874

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=80.10  E-value=4.4  Score=29.20  Aligned_cols=30  Identities=30%  Similarity=0.579  Sum_probs=24.1

Q ss_pred             EEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          56 VRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        56 irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ....++.||.+.|.|-  .|..+||-+.+.|+
T Consensus        98 ~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV~  127 (128)
T COG3794          98 FTHTFETPGEYTYYCT--PHPGMGMKGKIVVG  127 (128)
T ss_pred             eEEEecccceEEEEec--cCCCCCcEEEEEeC
Confidence            3344445999999995  69999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
1aoz_A	552	Refined Crystal Structure Of Ascorbate Oxidase At 1		5e-07
2hzh_A	499	Crystal Structure Of Laccase From Coriolus Zonatus		6e-05
3t9w_A	299	Small Laccase From Amycolatopsis Sp. Atcc 39116 Len		9e-05
2xyb_A	497	Crystal Structure Of A Fully Functional Laccase Fro		1e-04
3pps_A	604	Crystal Structure Of An Ascomycete Fungal Laccase F		2e-04
3v9e_A	580	Structure Of The L513m Mutant Of The Laccase From B		2e-04
1kya_A	499	Active Laccase From Trametes Versicolor Complexed W		4e-04
3t6v_A	495	Crystal Structure Of Laccase From Steccherinum Ochr		5e-04
1hfu_A	503	Type-2 Cu-Depleted Laccase From Coprinus Cinereus A		5e-04
3sqr_A	580	Crystal Structure Of Laccase From Botrytis Aclada A		6e-04
1gyc_A	499	Crystal Structure Determination At Room Temperature		6e-04
3kw7_A	502	Crystal Structure Of Lacb From Trametes Sp. Ah28-2		7e-04
1a65_A	504	Type-2 Cu-depleted Laccase From Coprinus Cinereus L		9e-04

>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolution Length = 552

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 39  RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK 90
            P +++TV   P G+T +R   +NPG+W FHCH   H   GM +VF  G  K
Sbjct: 476 NPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEK 527

>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6 A Resolution Length = 499

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 40  PIVKDTVGN-LPSGYTVVRVHF--NNPGMWYFHCHFVMHTDTGMTLVF 84
           PI +DTV    P+    V + F  NNPG W+ HCH   H + G  +VF
Sbjct: 420 PIFRDTVSTGTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467

>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116 Length = 299

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 24  RQLD-QEGPRLRTTQPRPIV--KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
           R LD + G R     P P++  KD    +  G+ V+      PGMW +HCH   H+D GM
Sbjct: 220 RWLDNRTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHSDMGM 279
Query: 81  TLVFQV 86
             +F V
Sbjct: 280 AGMFLV 285

>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The Ligninolytic Fungus Pycnoporus Cinnabarinus Length = 497

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 39  RPIVKDTVG-NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLV 83
            PI +D V    P     +R   NNPG W+ HCH   H D G  +V
Sbjct: 419 NPIFRDVVSTGQPGDNVTIRFETNNPGPWFLHCHIDFHLDAGFAVV 464

>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From Thielavia Arenaria Length = 604

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 31  PRLRTTQPRPIVKDTVGNLPSG-YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           PRL+   P   V+  V  LP+G + ++    +NPG W FHCH   H   G+++ F
Sbjct: 507 PRLKGNNP---VRRDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSVDF 558

>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada Length = 580

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 38  PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           PR  V    GN   GY  +    +NPG W  HCH   H   GM + F
Sbjct: 497 PRRDVAALPGN---GYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQF 540

>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With 2,5-Xylidine Length = 499

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 40  PIVKDTV--GNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           PI +D V  G   +G  V +R   +NPG W+ HCH   H + G  +VF
Sbjct: 420 PIFRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467

>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum Length = 495

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 40  PIVKDTVGNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           PI +D V     G  V +R   +NPG W+ HCH   H D G  +VF
Sbjct: 422 PIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467

>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68 A Resolution Length = 503

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 40  PIVKDTVGNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           P+ +D V    +G  V +R   +NPG W+FHCH   H   G+ +VF
Sbjct: 421 PVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466

>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67 A Resolution Length = 580

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 38  PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           PR  V    GN   GY  +    +NPG W  HCH   H   G+ + F
Sbjct: 497 PRRDVAALPGN---GYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQF 540

>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A Laccase From Trametes Versicolor In Its Oxidised Form Containing A Full Complement Of Copper Ions Length = 499

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 40  PIVKDTV--GNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRK 90
           PI +D V  G   +G  V +R   +NPG W+ HCH   H + G  +VF   V D K
Sbjct: 420 PIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVK 475

>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2 Length = 502

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 40  PIVKDTV--GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
           P+ +DTV  GN P     +R   +N G W+ HCH   H + G  +VF
Sbjct: 425 PVRRDTVSTGN-PGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVF 470

>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus Length = 504

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 39  RPIVKDTVGNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLVF 84
            P+ +D V    +G  V +R   +NPG W+FHCH   H   G+ +VF
Sbjct: 420 NPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVF 466

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
1aoz_A	552	Ascorbate oxidase; oxidoreductase(oxygen acceptor)	4e-18
2q9o_A	559	Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct	1e-15
1zpu_A	534	Iron transport multicopper oxidase FET3; ferroxida	6e-15
1hfu_A	503	Laccase 1; oxidoreductase, blue multi-copper oxida	7e-15
3sqr_A	580	Laccase; multicopper oxidase, glycosylation, oxido	9e-15
3t6v_A	495	Laccase; beta barrel, oxidoreductase; HET: CBS; 2.	2e-14
3pxl_A	499	Laccase; 4-copper protein, metal-binding, oxidored	4e-14
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	1e-13
2xu9_A	439	Laccase; oxidoreductase, multicopper oxidases; 1.5	1e-13
3zx1_A	481	Oxidoreductase, putative; laccase, metallo-oxidase	2e-12
3abg_A	534	Bilirubin oxidase; cleavage on PAIR of basic resid	3e-11
2wsd_A	513	Spore coat protein A; oxidoreductase, multi-copper	2e-10
2g23_A	612	PHS, phenoxazinone synthase; copper, metalloprotei	6e-10
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	6e-09
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	7e-09
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	2e-08
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	8e-09
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	1e-08
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	2e-07
3aw5_A	448	Multicopper oxidase; beta barrel, oxidoreductase;	1e-08
3od3_A	488	Blue copper oxidase CUEO; multicopper oxidase, Cu(	2e-08
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	2e-08
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	3e-08
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	3e-08
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	1e-06
2uxt_A	451	Protein SUFI, SUFI; oxidoreductase, periplasmic, c	2e-06
2zwn_A	339	Two-domain type laccase; muticopper oxidase, oxido	2e-05
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	9e-04

>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Length = 552

 Score = 77.7 bits (192), Expect = 4e-18
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHF 99
           P +++TV   P G+T +R   +NPG+W FHCH   H   GM +VF  G  K   R P   
Sbjct: 477 PPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEK-VGRIPTKA 535

Query: 100 PQCDNFQPAVTKQ 112
             C     ++   
Sbjct: 536 LACGGTAKSLINN 548

>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A* Length = 559

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVRAP 96
           P  +DT      G+ ++    +NPG W FHCH   H   G+++ F       R++  +  
Sbjct: 473 PPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQED 532

Query: 97  P--HFPQCDNF 105
                  CD +
Sbjct: 533 EDDFNRVCDEW 543

>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} Length = 534

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVRAP 96
           P+ +DT+   P    V+R   +NPG+W+FHCH   H   G+ LV        +    +  
Sbjct: 433 PMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDPFGIQDAHSQQL 492

Query: 97  P--HFPQCDN 104
              H   C +
Sbjct: 493 SENHLEVCQS 502

>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A* Length = 503

 Score = 68.5 bits (168), Expect = 7e-15
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 40  PIVKDTVGNLPSG-YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRAP 96
           P+ +D V    +G    +R   +NPG W+FHCH   H   G+ +VF   + +       P
Sbjct: 421 PVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPP 480

Query: 97  P-HFPQCDNFQP 107
                 C+ +  
Sbjct: 481 VEWAQLCEIYDD 492

>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada} Length = 580

 Score = 68.2 bits (167), Expect = 9e-15
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 40  PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRAPP 97
           P  +D      +GY  +    +NPG W  HCH   H   G+ + F          +    
Sbjct: 496 PPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFVESQSSIAVKMTDTA 555

Query: 98  -HFPQCDNF 105
                C N+
Sbjct: 556 IFEDTCANW 564

>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A* Length = 495

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 40  PIVKDTVGNLPS--GYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRA 95
           PI +D V  +        +R   +NPG W+ HCH   H D G  +VF   + +       
Sbjct: 422 PIWRDVVS-IGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDIPNTASANPV 480

Query: 96  PP-HFPQCDNF 105
           P      C ++
Sbjct: 481 PEAWSNLCPSY 491

>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A* Length = 499

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 40  PIVKDTVG---NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG--DRKQFVR 94
           PI +D V            +R   NNPG W+ HCH   H + G  +V      D K    
Sbjct: 420 PIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAEDTPDVKAVNP 479

Query: 95  APP-HFPQCDNF 105
            P      C  +
Sbjct: 480 VPQAWSDLCPTY 491

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Length = 521

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 40  PIVKDTVGNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD---RKQFVR 94
           P+ +D V  +  G      R   +NPG W+ HCH   H + G+ +VF             
Sbjct: 442 PVRRDVVS-IGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAI 500

Query: 95  APPHFPQCDNF 105
           +P     C  +
Sbjct: 501 SPAWDDLCPKY 511

>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A Length = 439

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 18/50 (36%), Positives = 20/50 (40%)

Query: 38  PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG 87
           P    KD V         + V     G   FHCH V H D GM  V +VG
Sbjct: 390 PYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 439

>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp} Length = 481

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 26  LDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQ 85
           +  +            ++DT+   P+    +R+  +  G+  +HCH + H D GM    +
Sbjct: 419 ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLE 478

Query: 86  VGD 88
           V +
Sbjct: 479 VKE 481

>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A* Length = 534

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 43  KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHF-- 99
           KD V        VV  H+   PG++ FHCH ++H D  M   F       +      F  
Sbjct: 429 KDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLPDYGYNATVFVD 488

Query: 100 PQCDNFQP 107
           P  + +Q 
Sbjct: 489 PMEELWQA 496

>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A Length = 513

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 25  QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLV 83
           +L   GP +         KDT+         +   F    G + +HCH + H D  M   
Sbjct: 446 ELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHALEHEDYDMMRP 505

Query: 84  FQVGD 88
             + D
Sbjct: 506 MDITD 510

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 Length = 306

 Score = 51.3 bits (122), Expect = 6e-09
 Identities = 6/50 (12%), Positives = 13/50 (26%)

Query: 39  RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
                  +  + +  T   +  +  G W        H   GM     + +
Sbjct: 251 NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKN 300

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Length = 742

 Score = 51.2 bits (121), Expect = 7e-09
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 43  KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
           +DT+   P     V +   NPG+W   CH     + GMT + +V
Sbjct: 666 EDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKV 709

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Length = 742

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 8/59 (13%), Positives = 19/59 (32%)

Query: 43  KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQ 101
           + ++   P  +   +    + G +   CH   H   GM    +V    +  +      +
Sbjct: 284 QASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCPEEPQLRMKNNE 342

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065

 Score = 51.1 bits (121), Expect = 8e-09
 Identities = 14/61 (22%), Positives = 20/61 (32%)

Query: 30   GPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR 89
            G   +         D     P  Y  + +    PG+W  HCH   H   GM   + V   
Sbjct: 1000 GHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQN 1059

Query: 90   K 90
            +
Sbjct: 1060 E 1060

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 37  QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV-GDRKQFVRA 95
             +    DT+   P+      +   NPG W   C  + H   G+   FQV    K   + 
Sbjct: 305 TNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKD 364

Query: 96  PPHFPQCDNFQPAVTKQDW 114
                   ++  A  +  W
Sbjct: 365 NIRGKHVRHYYIAAEEIIW 383

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 11/75 (14%), Positives = 24/75 (32%)

Query: 43  KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQC 102
           +DT    P     + +  +  G +   C    H   GM   + V   ++       +   
Sbjct: 672 RDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGE 731

Query: 103 DNFQPAVTKQDWAAA 117
             +  A  + +W  +
Sbjct: 732 RTYYIAAVEVEWDYS 746

>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum} Length = 448

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 43  KDTVGNLPSGYTVVRVHFNNP---GMWYFHCHFVMHTDTGMTLVFQV 86
           KDTV   P     + V+F+      ++ FHCH + H D GM +   V
Sbjct: 401 KDTVLIWPGETVKIVVNFDAKKRGQLFPFHCHNLEHEDGGMMINIAV 447

>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ... Length = 488

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 43  KDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV 86
           KDTV  +    + V V FN        +  HCH + H DTGM L F V
Sbjct: 442 KDTV-KVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Length = 288

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 39  RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
                DT+  +     ++ + F  PG + FH H     + G    F+V
Sbjct: 239 PSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKTEFAELGWMGFFEV 286

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} Length = 276

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 37  QPRPIVKDTVGNLPSG---YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV 93
                V D     P+    + ++       G W +HCH   H+D GM  +F V       
Sbjct: 211 DDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG-- 268

Query: 94  RAPPHFP 100
             P + P
Sbjct: 269 TIPGYEP 275

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor} Length = 343

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 37  QPRPIVKDTVGNLPSG---YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV 93
                V D     P+    + ++       G W +HCH   H+D GM  +F V       
Sbjct: 252 DDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG-- 309

Query: 94  RAPPHFPQ 101
             P + P 
Sbjct: 310 TIPGYEPH 317

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea} Length = 318

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 38  PRPIVKDTVGNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGMT 81
            +PI  DTV  +  G  Y V+ ++ +NPG+W  H H   HT  G  
Sbjct: 220 DKPIKGDTV-LIGPGERYDVI-LNMDNPGLWMIHDHVDTHTTNGDK 263

>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A Length = 451

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 38  PRPIVKDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV 86
                KDTV     G   + V+F         +YF+   +   D G      V
Sbjct: 389 EDRGWKDTV--WVDGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLV 439

>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} Length = 339

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 38  PRPIVKDTVGNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
             P   DTV  +  G  Y V+ +  +NPG + FH H   H   G 
Sbjct: 221 DSPYYADTV-LVSPGERYDVI-IEADNPGRFIFHDHVDTHVTAGG 263

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Length = 447

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 50  PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
           P G T+V    +  G +    H +   + G+     V
Sbjct: 395 PGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNV 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
1aoz_A	552	Ascorbate oxidase; oxidoreductase(oxygen acceptor)	99.9
3sqr_A	580	Laccase; multicopper oxidase, glycosylation, oxido	99.84
2q9o_A	559	Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct	99.83
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	99.82
1hfu_A	503	Laccase 1; oxidoreductase, blue multi-copper oxida	99.81
1zpu_A	534	Iron transport multicopper oxidase FET3; ferroxida	99.8
3pxl_A	499	Laccase; 4-copper protein, metal-binding, oxidored	99.79
3t6v_A	495	Laccase; beta barrel, oxidoreductase; HET: CBS; 2.	99.78
2xu9_A	439	Laccase; oxidoreductase, multicopper oxidases; 1.5	99.71
3abg_A	534	Bilirubin oxidase; cleavage on PAIR of basic resid	99.71
3gyr_A	612	PHS, phenoxazinone synthase; metalloprotein, lacca	99.7
2wsd_A	513	Spore coat protein A; oxidoreductase, multi-copper	99.6
3aw5_A	448	Multicopper oxidase; beta barrel, oxidoreductase;	99.56
3zx1_A	481	Oxidoreductase, putative; laccase, metallo-oxidase	99.55
2g23_A	612	PHS, phenoxazinone synthase; copper, metalloprotei	99.54
2uxt_A	451	Protein SUFI, SUFI; oxidoreductase, periplasmic, c	99.53
3tas_A	313	Small laccase, multi-copper oxidase; two-domain la	99.43
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	99.4
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	99.39
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	99.38
3t9w_A	299	Small laccase, multi-copper oxidase; two-domain co	99.35
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	99.33
3od3_A	488	Blue copper oxidase CUEO; multicopper oxidase, Cu(	99.33
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	99.3
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	99.25
2zwn_A	339	Two-domain type laccase; muticopper oxidase, oxido	99.16
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	99.1
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	99.04
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.04
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	98.98
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	98.94
2bw4_A	340	Copper-containing nitrite reductase; oxidoreductas	98.93
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	98.89
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.79
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	98.69
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	98.62
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	98.57
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	98.52
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	98.42
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.4
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	98.35
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	98.32
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.17
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	98.11
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	98.1
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.1
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	98.08
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	98.08
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	97.98
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	97.97
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	97.97
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	97.88
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	97.86
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	97.86
2bw4_A	340	Copper-containing nitrite reductase; oxidoreductas	97.68
2cal_A	154	Rusticyanin; iron respiratory electron transport c	97.66
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	97.63
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	97.61
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	97.4
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	97.37
1aoz_A	552	Ascorbate oxidase; oxidoreductase(oxygen acceptor)	97.25
2zwn_A	339	Two-domain type laccase; muticopper oxidase, oxido	97.17
2q9o_A	559	Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct	97.13
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	97.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.01
3t9w_A	299	Small laccase, multi-copper oxidase; two-domain co	96.98
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	96.98
3tas_A	313	Small laccase, multi-copper oxidase; two-domain la	96.96
1hfu_A	503	Laccase 1; oxidoreductase, blue multi-copper oxida	96.93
3pxl_A	499	Laccase; 4-copper protein, metal-binding, oxidored	96.91
3t6v_A	495	Laccase; beta barrel, oxidoreductase; HET: CBS; 2.	96.91
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	96.91
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	96.88
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	96.82
2uxt_A	451	Protein SUFI, SUFI; oxidoreductase, periplasmic, c	96.81
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	96.77
3sqr_A	580	Laccase; multicopper oxidase, glycosylation, oxido	96.76
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	96.76
1zpu_A	534	Iron transport multicopper oxidase FET3; ferroxida	96.74
3aw5_A	448	Multicopper oxidase; beta barrel, oxidoreductase;	96.69
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	96.64
2xu9_A	439	Laccase; oxidoreductase, multicopper oxidases; 1.5	96.29
3od3_A	488	Blue copper oxidase CUEO; multicopper oxidase, Cu(	96.15
3zx1_A	481	Oxidoreductase, putative; laccase, metallo-oxidase	96.1
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	96.1
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	96.09
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	96.06
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	96.02
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	95.92
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	95.82
2g23_A	612	PHS, phenoxazinone synthase; copper, metalloprotei	95.52
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	95.39
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	95.3
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	95.25
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	95.17
3abg_A	534	Bilirubin oxidase; cleavage on PAIR of basic resid	94.98
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	94.64
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	94.56
2wsd_A	513	Spore coat protein A; oxidoreductase, multi-copper	94.23
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	93.58
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	93.16
3gyr_A	612	PHS, phenoxazinone synthase; metalloprotein, lacca	92.93
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.66
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	90.79

>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*

Probab=99.90  E-value=6.5e-25  Score=185.64  Aligned_cols=90  Identities=29%  Similarity=0.545  Sum_probs=78.2

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |+||++|. +.|.     .      .+    ...+|+.+|++||||.|+|++|++|||++||||.|+||||+++|++.||
T Consensus       454 F~Vl~~g~-G~~~-----~------~~----~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDNPG~W~~HCHi~~H~~~GM  517 (552)
T 1aoz_A          454 FWVLGYGD-GKFS-----A------EE----ESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGM  517 (552)
T ss_dssp             EEEEEEEE-SSCC-----G------GG----GGGSCCSSCCEESEEEECTTEEEEEEEECCSCEEEEEEESSHHHHHTTC
T ss_pred             eEEEeccc-CccC-----c------cc----ccccccCCCCccCeEEeCCCceEEEEEEcCCCeEEEEEeeehhHhhCCC
Confidence            79999986 3443     1      11    2258999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCccCCCCCCCCCCccCCC
Q psy9698          81 TLVFQVGDRKQFVRAPPHFPQCDNFQP  107 (123)
Q Consensus        81 ~~~~~V~~~~~~~~~p~~~~~C~~~~~  107 (123)
                      +++|.|+ +++++++|++++.|+.+++
T Consensus       518 ~~~~~~~-~~~~~~~P~~~~~C~~~~~  543 (552)
T 1aoz_A          518 GVVFAEG-VEKVGRIPTKALACGGTAK  543 (552)
T ss_dssp             EEEEEEC-GGGCCCCCHHHHSSHHHHH
T ss_pred             eEEEEeC-chhhccCCcchhhhhccCc
Confidence            9999997 4588899999999999863

>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}

Probab=99.84  E-value=3.8e-22  Score=170.86  Aligned_cols=90  Identities=21%  Similarity=0.482  Sum_probs=73.7

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. ++|..          +.   + ...+|+.||++|||+.|+|++|++|||++||||.|+||||+.+|++.||
T Consensus       472 F~vv~~g~-G~f~~----------~~---~-~~~~nl~nP~~rDTv~v~~~g~~~irf~adNPG~W~~HCHi~~H~~~Gm  536 (580)
T 3sqr_A          472 FFIVAQET-DVFNS----------DE---S-PAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGL  536 (580)
T ss_dssp             EEEEEEES-SCCCT----------TT---S-GGGCCCBSCCEESEEEECTTSEEEEEEESCSCEEEEEEECSHHHHHTTC
T ss_pred             EEEEecCC-CccCc----------cc---c-ccccccCCCceeeEEEeCCCceEEEEEEcCCCeeeEEEECcHHHhhCCC
Confidence            89999987 45441          01   1 2358999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCccCC---CCCCC-CCCccCC
Q psy9698          81 TLVFQVGDRKQFVR---APPHF-PQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~~~~~~~---~p~~~-~~C~~~~  106 (123)
                      +++|.++ ++++++   +|+.+ ..|..|+
T Consensus       537 ~~~~~e~-~~~i~~~~~~~~~~~~~C~~~~  565 (580)
T 3sqr_A          537 AMQFVES-QSSIAVKMTDTAIFEDTCANWN  565 (580)
T ss_dssp             EEEEEES-GGGCCCCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEC-HHHHhhccCCcHHHHHhhHHHh
Confidence            9999986 444543   44544 5899885

>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*

Probab=99.83  E-value=9e-22  Score=167.01  Aligned_cols=73  Identities=26%  Similarity=0.545  Sum_probs=62.7

Q ss_pred             ccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc--CccCCC--CC-CCCCCccCC
Q psy9698          34 RTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR--KQFVRA--PP-HFPQCDNFQ  106 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~--~~~~~~--p~-~~~~C~~~~  106 (123)
                      .+|+.+|+|||||.|++++|++|||++||||.|+||||+++|++.||+++|.|...  .++.++  |. .++.|+.|+
T Consensus       467 ~~n~~~p~~RDTV~Vp~~g~v~IrF~adNPG~W~~HCHil~H~~~GM~~~~~v~~~~~~~~~~~~~p~~~~~~C~~~~  544 (559)
T 2q9o_A          467 RLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEWR  544 (559)
T ss_dssp             GCCCBSCCEESEEEECTTSEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCccceEEccCCccEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEECcchhhhccccCCchhhhhhccccc
Confidence            47899999999999999999999999999999999999999999999999998631  223333  54 457999996

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3

Probab=99.82  E-value=2.4e-21  Score=163.08  Aligned_cols=73  Identities=23%  Similarity=0.460  Sum_probs=63.4

Q ss_pred             cCCCCCceeeeEEe-CCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccC--ccCCCCC-CCCCCccCCC
Q psy9698          35 TTQPRPIVKDTVGN-LPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK--QFVRAPP-HFPQCDNFQP  107 (123)
Q Consensus        35 ~n~~~p~~rDTv~v-~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~--~~~~~p~-~~~~C~~~~~  107 (123)
                      +|+.+|+|||||.| +|++|++|||++||||.|+||||+++|++.||+++|.|...+  ++.++|. ..+.|+.|++
T Consensus       437 ~n~~~p~~rDTV~V~p~gg~v~Irf~aDNPG~W~~HCHi~~H~~~GM~~~~~v~~~~~~~~~~~p~~~~~~C~~~~~  513 (521)
T 1v10_A          437 YNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAISPAWDDLCPKYNA  513 (521)
T ss_dssp             CCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEEESCHHHHTTTCEEEEEESGGGHHHHSCCCHHHHTHHHHHTT
T ss_pred             cccCCCCeeeeEEeCCCCcEEEEEEEeCCCeeEEEeeChHHHHhCCCeEEEEECCcchhhccCCChHHhhhchhhhc
Confidence            67899999999999 899999999999999999999999999999999999997421  2334564 4689999974

>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*

Probab=99.81  E-value=3.7e-21  Score=161.26  Aligned_cols=73  Identities=25%  Similarity=0.531  Sum_probs=63.2

Q ss_pred             cCCCCCceeeeEEe-CCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc--CccCCCCC-CCCCCccCCC
Q psy9698          35 TTQPRPIVKDTVGN-LPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR--KQFVRAPP-HFPQCDNFQP  107 (123)
Q Consensus        35 ~n~~~p~~rDTv~v-~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~--~~~~~~p~-~~~~C~~~~~  107 (123)
                      +|+.+|.|||||.| +|++|++|||++||||.|+||||+++|++.||++.|.|...  ..+.++|. ..+.|+.|+.
T Consensus       416 ~n~~~p~~rDTV~V~ppg~~v~irf~adnPG~W~~HCHil~H~~~GM~~~~~v~~~~~~~~~~~p~~~~~~C~~~~~  492 (503)
T 1hfu_A          416 YNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPPVEWAQLCEIYDD  492 (503)
T ss_dssp             CCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECHHHHHHHCCCCHHHHHHHHHHHT
T ss_pred             cccCCCCeeeeEEecCCCceEEEEEEcCCCeeeeEecCchhHhhCCCeEEEEECchhhhhccCCChHHhhhccchhh
Confidence            57889999999999 89999999999999999999999999999999999999632  13344564 4679999964

>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}

Probab=99.80  E-value=9.3e-21  Score=160.15  Aligned_cols=73  Identities=27%  Similarity=0.535  Sum_probs=61.5

Q ss_pred             CCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccCcc-----CCCCCC-CCCCccCCCCCc
Q psy9698          37 QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQF-----VRAPPH-FPQCDNFQPAVT  110 (123)
Q Consensus        37 ~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~-----~~~p~~-~~~C~~~~~~~~  110 (123)
                      ..+|+|||||.|+|++|++|||++||||.|+||||+++|++.||+++|.|.. +.+     .++|.+ .+.|..|..+..
T Consensus       430 ~~~p~~RDTv~V~pgg~v~IrF~aDNPG~W~~HCHi~~H~~~GM~~~~~~~~-~~~~~~~~~~~p~~~~~~C~~~~~~~~  508 (534)
T 1zpu_A          430 PEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWHLLQGLGLVLVEDP-FGIQDAHSQQLSENHLEVCQSCSVATE  508 (534)
T ss_dssp             CSSCEEESEEEECTTCEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEECH-HHHHHCGGGSCCHHHHHHHHHTTCCCS
T ss_pred             cCCCCeeeEEEeCCCCEEEEEEEeCCCeeEEEEeCchhHhhcCCeEEEEECc-cccccccccCCChhHhhhhhccCCCCC
Confidence            5689999999999999999999999999999999999999999999999863 222     234554 469998875443

>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*

Probab=99.79  E-value=1.9e-20  Score=157.57  Aligned_cols=72  Identities=25%  Similarity=0.582  Sum_probs=62.4

Q ss_pred             ccCCCCCceeeeEEeCC---CCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccCccC---CCCCCC-CCCccCC
Q psy9698          34 RTTQPRPIVKDTVGNLP---SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV---RAPPHF-PQCDNFQ  106 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v~p---g~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~---~~p~~~-~~C~~~~  106 (123)
                      .+|+.+|++|||+.|++   ++|++|||++||||.|+||||+.+|++.||+++|.++ ++.++   ++|..+ ..|..|+
T Consensus       414 ~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnPG~W~~HCHi~~H~~~Gm~~~~~e~-~~~~~~~~~~p~~~~~~C~~~~  492 (499)
T 3pxl_A          414 VYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAED-TPDVKAVNPVPQAWSDLCPTYD  492 (499)
T ss_dssp             CCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEES-GGGHHHHSCCCHHHHTHHHHHH
T ss_pred             ccccCCCCccceEEcCCcCCCcEEEEEEEcCCCceEEEEeCChhHhhCCCcEEEEEC-hhHhccccCCCHHHHHhhhHhh
Confidence            47899999999999997   9999999999999999999999999999999999876 44443   356654 6899885

>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*

Probab=99.78  E-value=2e-20  Score=157.21  Aligned_cols=72  Identities=26%  Similarity=0.573  Sum_probs=61.7

Q ss_pred             ccCCCCCceeeeEEeCC-CCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccCccC---CCCCCC-CCCccCC
Q psy9698          34 RTTQPRPIVKDTVGNLP-SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFV---RAPPHF-PQCDNFQ  106 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v~p-g~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~---~~p~~~-~~C~~~~  106 (123)
                      .+|+.+|++|||+.|++ |+|++|||++||||.|+||||+.+|++.||+++|.++ +++++   ++|..+ ..|..|+
T Consensus       416 ~~n~~~P~~rDtv~v~~~g~~~~irf~adnPG~W~~HCHi~~H~~~Gm~~~~~e~-~~~~~~~~~~p~~~~~~C~~~~  492 (495)
T 3t6v_A          416 TSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAED-IPNTASANPVPEAWSNLCPSYD  492 (495)
T ss_dssp             CCCSSSCCEESEEECCSTTCEEEEEEECCSCEEEEEEESCHHHHHTTCEEEEEET-HHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CcccCCCCCccEEEcCCCCcEEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEEC-hhHhccccCCCHHHHHHhhHhh
Confidence            47889999999999997 9999999999999999999999999999999999876 44343   356654 5888774

>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A

Probab=99.71  E-value=5.1e-18  Score=139.83  Aligned_cols=51  Identities=35%  Similarity=0.485  Sum_probs=48.7

Q ss_pred             CCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          37 QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        37 ~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+|.|||||.|+|+++++|||++||||.|+||||+++|++.|||+.|+|+
T Consensus       389 ~~~p~~rDTv~v~p~~~v~i~f~adnpG~w~~HCHil~H~~~GMm~~~~Vg  439 (439)
T 2xu9_A          389 FPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG  439 (439)
T ss_dssp             CSSCCCBSEEEECTTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEEC
T ss_pred             CCCCCCeEEEEeCCCCEEEEEEEcCCCCCEEEECCcchhhhcCCcEEEEeC
Confidence            357999999999999999999999999999999999999999999999985

>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*

Probab=99.71  E-value=1.5e-17  Score=140.71  Aligned_cols=72  Identities=25%  Similarity=0.300  Sum_probs=56.5

Q ss_pred             cCCCCCceeeeEEeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEeeccCc--cCCCCCCCCCCccCCC
Q psy9698          35 TTQPRPIVKDTVGNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQ--FVRAPPHFPQCDNFQP  107 (123)
Q Consensus        35 ~n~~~p~~rDTv~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~--~~~~p~~~~~C~~~~~  107 (123)
                      .|+++ .|||||.|+|+++++|||+ ++|||.|+||||+++|++.|||+.|.|...++  .++..-.-|.|..|+.
T Consensus       422 ~~~~~-~~rDTV~v~pg~~v~I~~~~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~~~p~~~~w~~  496 (534)
T 3abg_A          422 MPYES-GLKDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNATVLPDYGYNATVFVDPMEELWQA  496 (534)
T ss_dssp             CSGGG-SCBSEECCCSSEEEEEEEECCSCCEEEEEEESCHHHHHTTCEEEEEECSSCCSSTTTTSCSSSSSCCCSS
T ss_pred             Ccccc-CCcCeEEcCCCCEEEEEEEECCCCccEEEecChHHHHhcCCceEEEEEeccccCCCCcccCCCCCccccc
Confidence            34556 8999999999999999999 99999999999999999999999999975432  2221111146666663

>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}

Probab=99.70  E-value=6.9e-18  Score=142.27  Aligned_cols=56  Identities=23%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             cCCCCCceeeeEEeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEeeccC
Q psy9698          35 TTQPRPIVKDTVGNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK   90 (123)
Q Consensus        35 ~n~~~p~~rDTv~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~   90 (123)
                      .+..++.|||||.|+++++++|||+ +||||.|+|||||++|++.|||+.|.|.+++
T Consensus       537 ~~~~~~~~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil~Hed~GMM~~f~V~~p~  593 (612)
T 3gyr_A          537 LAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPE  593 (612)
T ss_dssp             CCTTCSSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHHTTCEEEEEEECHH
T ss_pred             cccccCCCCcEEEECCCCEEEEEEEeCCCCcceEEcCCChHHHhCcCCcceEEeCCc
Confidence            3456788999999999999999998 7999999999999999999999999997544

>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A

Probab=99.60  E-value=7.3e-16  Score=129.37  Aligned_cols=49  Identities=24%  Similarity=0.380  Sum_probs=46.2

Q ss_pred             CceeeeEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeec
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +.|||||.|+|+++++|+|++ +|||.|+||||+++|++.|||+.|.|.+
T Consensus       461 ~~~rDTv~v~pg~~~~i~~~f~dnpG~w~~HCHil~H~~~GMm~~~~V~~  510 (513)
T 2wsd_A          461 KGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHALEHEDYDMMRPMDITD  510 (513)
T ss_dssp             SSCBSEEEECTTEEEEEEEECCSCCEEEEEEESCHHHHTTTCEEEEEEBC
T ss_pred             cCcccEEEeCCCCEEEEEEEecCCCCCEEEEcCChhhhhcCCceeEEEeC
Confidence            459999999999999999998 8999999999999999999999999964

>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}

Probab=99.56  E-value=9.5e-16  Score=127.03  Aligned_cols=48  Identities=29%  Similarity=0.367  Sum_probs=43.5

Q ss_pred             CCCceeeeEEeCCCCEEEEE--EE---ecCCceEEEeecCccccccCceEEEEee
Q psy9698          38 PRPIVKDTVGNLPSGYTVVR--VH---FNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~ir--f~---adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .+|.|||||.|+|+++++|+  |.   +|||  |+||||+++|++.|||+.|.|.
T Consensus       396 ~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp--w~~HCHil~H~d~GMm~~~~V~  448 (448)
T 3aw5_A          396 TDLGLKDTVLIWPGETVKIVVNFDAKKRGQL--FPFHCHNLEHEDGGMMINIAVK  448 (448)
T ss_dssp             GGGSCBSEEEECTTCEEEEEEEECGGGTTCE--EEEEESSHHHHHTTCEEEEEEC
T ss_pred             cccCCccEEEeCCCCEEEEEEEecccCCCCc--EEEEcCChHHHhCCCceEEEeC
Confidence            34579999999999999776  88   8999  9999999999999999999883

>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}

Probab=99.55  E-value=3.3e-15  Score=125.33  Aligned_cols=49  Identities=27%  Similarity=0.465  Sum_probs=47.4

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .+.|||||.|+|+++++|+|+++|||.|+||||+++|++.||++.|.|.
T Consensus       432 ~~~~kDTv~v~Pg~~~~i~~~~d~pG~w~~HCHil~H~d~GMm~~~~V~  480 (481)
T 3zx1_A          432 FRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVK  480 (481)
T ss_dssp             SCCEESEEEECTTCEEEEEECCCSCEEEEEEESSHHHHHTTCEEEEEEE
T ss_pred             cCcccceEEECCCCEEEEEEEcCCCeeEEEEcCChHHHhcCCceEEEEe
Confidence            4789999999999999999999999999999999999999999999995

>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A

Probab=99.53  E-value=3.6e-15  Score=123.53  Aligned_cols=52  Identities=25%  Similarity=0.261  Sum_probs=48.1

Q ss_pred             cCCCCCceeeeEEeCCCCEEEEEEEecCCce----EEEeecCccccccCceEEEEeec
Q psy9698          35 TTQPRPIVKDTVGNLPSGYTVVRVHFNNPGM----WYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        35 ~n~~~p~~rDTv~v~pg~~~~irf~adnpG~----Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +|+.+|.|||||.|  +++++|+|+++|||.    |+||||+++|++.|||+.|.|.+
T Consensus       386 ~~~~~p~~rDTv~v--g~~~~i~~~~dnpg~~~g~w~~HCHil~H~d~GMm~~~~v~~  441 (451)
T 2uxt_A          386 PFPEDRGWKDTVWV--DGQVELLVYFGQPSWAHFPFYFNSQTLEMADRGSIGQLLVNP  441 (451)
T ss_dssp             CCGGGSSCBSEEEE--EEEEEEEEECCSCCBTTBCEEEEESSHHHHHTTCEEEEEEEC
T ss_pred             CCcccCCCccEEEE--CCEEEEEEEeCCCCCCCCceEEeCCchhHHhCCCcEEEEEcc
Confidence            35567999999999  999999999999988    99999999999999999999974

>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*

Probab=99.43  E-value=3.4e-13  Score=106.90  Aligned_cols=54  Identities=28%  Similarity=0.407  Sum_probs=48.2

Q ss_pred             CCCCceeeeEEeCCCCEEEEEEEe---cCCceEEEeecCccccccCceEEEEeeccC
Q psy9698          37 QPRPIVKDTVGNLPSGYTVVRVHF---NNPGMWYFHCHFVMHTDTGMTLVFQVGDRK   90 (123)
Q Consensus        37 ~~~p~~rDTv~v~pg~~~~irf~a---dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~   90 (123)
                      ...|.++||+.|.|++..++++.+   +|||.|+||||+++|++.||++.|.|.+.+
T Consensus       217 ~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d  273 (313)
T 3tas_A          217 DDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPD  273 (313)
T ss_dssp             TCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred             CCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEEEEeCChHHHHCCCeEEEEEECCC
Confidence            346789999999999999888875   589999999999999999999999998654

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}

Probab=99.40  E-value=5.3e-13  Score=107.25  Aligned_cols=64  Identities=25%  Similarity=0.362  Sum_probs=51.0

Q ss_pred             CCceeeeEEeCCCCEEEEEEEe---cCCceEEEeecCccccccCceEEEEeeccCccCCCCCCCCCCcc
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHF---NNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPPHFPQCDN  104 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~a---dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~p~~~~~C~~  104 (123)
                      .+.++||+.|.||++++++|.+   +|||.|+||||+.+|++.||++.|.|.+.+  ...|.+.+.|-.
T Consensus       254 ~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~--~~~P~y~~~~~~  320 (343)
T 3cg8_A          254 PSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPD--GTIPGYEPHEHG  320 (343)
T ss_dssp             CCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT--SCCSCC------
T ss_pred             cccceeeEEeCCCCEEEEEEEECCCCCCeeEEEeCCCHHHHhccCcEEEEEecCC--CCCCCCCCCCcC
Confidence            3578999999999999999995   899999999999999999999999997533  345666665544

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=99.39  E-value=2.5e-13  Score=106.46  Aligned_cols=50  Identities=22%  Similarity=0.423  Sum_probs=47.7

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..|.++||+.|+||++.+++|.+++||.|+||||+..|++.||++.|.|.
T Consensus       238 ~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~  287 (288)
T 3gdc_A          238 TPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKTEFAELGWMGFFEVS  287 (288)
T ss_dssp             SCSEEESEEEEETTCEEEEEECCCSCEEEEEECSSHHHHTTTCEEEEEEE
T ss_pred             CCCceeeEEEeCCCceEEEEEECCCCEEEEEEecChHHHhcCCCEEEEEe
Confidence            45689999999999999999999999999999999999999999999985

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*

Probab=99.38  E-value=6.7e-13  Score=103.42  Aligned_cols=50  Identities=28%  Similarity=0.468  Sum_probs=47.2

Q ss_pred             CceeeeEEeCCCCEEEEEEEec---CCceEEEeecCccccccCceEEEEeecc
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFN---NPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~ad---npG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      +.++||+.|.||++.+++|.++   |||.|+||||+..|++.||++.|.|.+.
T Consensus       214 ~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~  266 (276)
T 3kw8_A          214 SRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKP  266 (276)
T ss_dssp             CCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECT
T ss_pred             ccCCccEEeCCCceEEEEEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCC
Confidence            5799999999999999999997   8999999999999999999999999754

>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}

Probab=99.35  E-value=1.3e-12  Score=103.20  Aligned_cols=53  Identities=30%  Similarity=0.448  Sum_probs=45.8

Q ss_pred             CCCCceeeeEEeCCCCEEEEEEE---ecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          37 QPRPIVKDTVGNLPSGYTVVRVH---FNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        37 ~~~p~~rDTv~v~pg~~~~irf~---adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ...+.++||+.|.||+...+++.   ++|||.|+||||+.+|++.||++.|.|.+.
T Consensus       233 ~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~HCHi~~H~~~GM~~~f~V~~~  288 (299)
T 3t9w_A          233 YDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRNA  288 (299)
T ss_dssp             TCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECT
T ss_pred             cCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEEEcCCHHHHhcCCeEEEEEECC
Confidence            34567899999999988776665   578999999999999999999999999754

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*

Probab=99.33  E-value=8e-13  Score=119.30  Aligned_cols=49  Identities=27%  Similarity=0.616  Sum_probs=47.7

Q ss_pred             CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      |.++||+.|+||++++|+|+++|||.|+||||+++|++.||++.|.|.+
T Consensus      1010 p~~~DTv~v~pg~~~~v~~~ad~pG~w~~HCH~~~H~~~GM~~~~~V~~ 1058 (1065)
T 2j5w_A         1010 VYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQ 1058 (1065)
T ss_dssp             CEEESEEEECTTCEEEEEECCCSCEEEEEEECCHHHHHTTCEEEEEEEC
T ss_pred             CceeeEEEECCCCeEEEEEECCCCeeEEEEeCCHHHHhcCCcEEEEEec
Confidence            8899999999999999999999999999999999999999999999974

>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...

Probab=99.33  E-value=6.5e-13  Score=111.70  Aligned_cols=46  Identities=41%  Similarity=0.550  Sum_probs=42.4

Q ss_pred             CceeeeEEeCCCCEEEEEEEec----CCceEEEeecCccccccCceEEEEe
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFN----NPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~ad----npG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +.|||||.|+ |++++|+|+++    +||.|+||||++.|++.|||+.|.|
T Consensus       439 ~~~kDTV~v~-g~~~~i~~~f~~~~~~~G~~m~HCH~l~Hed~GMm~~f~V  488 (488)
T 3od3_A          439 AGWKDTVKVE-GNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV  488 (488)
T ss_dssp             SSSBSEEEES-SSEEEEEECBCSCCCGGGCEEEEESSHHHHHTTCEEEEEC
T ss_pred             CCceeEEEeC-CCEEEEEEEeccCCCCCCCEEEeCCchHHHhcCCcEEEEC
Confidence            4699999999 99999999974    5789999999999999999999986

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}

Probab=99.30  E-value=2.2e-12  Score=102.58  Aligned_cols=51  Identities=31%  Similarity=0.507  Sum_probs=47.2

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccc------cCceEEEEeec
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTD------TGMTLVFQVGD   88 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~------~GM~~~~~V~~   88 (123)
                      .+|.++||+.|.||++++|+|.++|||.|+||||+++|++      .||++.+.|..
T Consensus       220 ~~p~~~dtv~l~pger~~v~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g  276 (318)
T 3g5w_A          220 DKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEE  276 (318)
T ss_dssp             EEEEEESEEEECTTCEEEEEEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETT
T ss_pred             CCCccccEEEECCCCEEEEEEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECC
Confidence            3678999999999999999999999999999999999997      68999999864

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=99.25  E-value=9.5e-12  Score=101.72  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=46.6

Q ss_pred             CCc-eeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          39 RPI-VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        39 ~p~-~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .|. ++||+.|+||++++|+|.++|||.|++|||+.+|.+.||+++|.|..
T Consensus       383 ~p~~~~dtv~l~pg~r~~i~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~  433 (447)
T 2dv6_A          383 PPLIGVQTVSVPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDG  433 (447)
T ss_dssp             CCEEEESEEEECTTEEEEEEEECCSCEEEEEEESSGGGGGGTCCEEEEECS
T ss_pred             CCcccccEEEECCCcEEEEEEECCCCEEEEEEecCcCccccCCEEEEEEeC
Confidence            344 69999999999999999999999999999999999999999999963

>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}

Probab=99.16  E-value=9.1e-11  Score=93.69  Aligned_cols=51  Identities=29%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccc------cccCceEEEEeec
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH------TDTGMTLVFQVGD   88 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H------~~~GM~~~~~V~~   88 (123)
                      .+|.++||+.|+||++++|+|.+++||.|++|||+..|      ...||++.+.+..
T Consensus       221 ~~p~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g  277 (339)
T 2zwn_A          221 DSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDG  277 (339)
T ss_dssp             EEEEEESEEEECTTCEEEEEEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETT
T ss_pred             CCCcEEEEEEECCCCEEEEEEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECC
Confidence            34789999999999999999999999999999999999      7789999998853

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2

Probab=99.10  E-value=6.1e-11  Score=101.61  Aligned_cols=51  Identities=18%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+|.++||+.|.||++++|+|.+++||.|+||||+.+|++.||++.|.|.+
T Consensus       277 ~d~~~~d~v~l~pg~r~~v~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~  327 (647)
T 1sdd_B          277 TQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD  327 (647)
T ss_dssp             SSCEEESSEEECTTEEEEEEEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred             CCCcccceEEECCCeEEEEEEEeccceEeecccCcccccccccccceeeec
Confidence            367899999999999999999999999999999999999999999999963

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3

Probab=99.04  E-value=1.1e-11  Score=97.82  Aligned_cols=50  Identities=12%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      ++.++||+.|.||+.++++|.+++||.|+||||+.+|++.||++.|.|.+
T Consensus       251 dG~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~  300 (306)
T 1sdd_A          251 NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKN  300 (306)
T ss_dssp             TTEECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBCCC----
T ss_pred             CCEEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCeEEEEEec
Confidence            56789999999999999999999999999999999999999999999963

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*

Probab=99.04  E-value=1.1e-11  Score=108.51  Aligned_cols=49  Identities=29%  Similarity=0.556  Sum_probs=47.2

Q ss_pred             CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      |.++||+.|.||+.++|.|.+++||.|+||||+++|++.||++.|.|.+
T Consensus       663 ~~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~~GM~~~~~V~~  711 (742)
T 2r7e_A          663 MVYEDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVSS  711 (742)
T ss_dssp             SSSBCSSCCCCCSSEECCEECCCCCCSCCEECCCSTTHHHHSCCCCCCC
T ss_pred             ccceeEEEECCCcEEEEEEEcCCCeEEEEEeCCchHHhCCCeEEEEEEe
Confidence            7899999999999999999999999999999999999999999999963

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=98.98  E-value=5.4e-11  Score=104.66  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=46.6

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ++.++||+.|.||++++|+|.+++||.|+||||+.+|++.||++.|.|.
T Consensus       407 dg~~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~~~H~~~GM~~~~~V~  455 (770)
T 2r7e_B          407 EEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVY  455 (770)
T ss_dssp             SCCEESEEECCTTCCCEEEECCSSCBCCCBCCCSHHHHTTBCCCCCCBC
T ss_pred             CCceeeEEEECCCeEEEEEEEeCCCCceEEEeccccccccccccccccc
Confidence            4669999999999999999999999999999999999999999999983

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*

Probab=98.94  E-value=1.8e-10  Score=100.94  Aligned_cols=49  Identities=16%  Similarity=0.337  Sum_probs=46.1

Q ss_pred             CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      ..++||+.|.|+++++++|.+++||.|+||||+..|++.||++.|.|..
T Consensus       281 g~~~Dtv~v~Pg~~~~v~~~~~~pG~w~~hCH~~~H~~~GM~~~~~V~~  329 (742)
T 2r7e_A          281 NHRQASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDS  329 (742)
T ss_dssp             TEECCSCCCCTTCCCEEEECCCSCSEECCCCCSSSSSTTSCCBCEEECC
T ss_pred             eEecceEEeCCCcEEEEEEEeCCCeeEEEEeCChhHHhCCCeEEEEEec
Confidence            3468999999999999999999999999999999999999999999964

>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...

Probab=98.93  E-value=2.1e-09  Score=85.31  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             eeeeEEeCCCCEEEEEEEecCCceEEEeecCc-cccccCceEEEEeec
Q psy9698          42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFV-MHTDTGMTLVFQVGD   88 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~-~H~~~GM~~~~~V~~   88 (123)
                      ++||+.|.||+.+.|.|.+++||.|+||||.. .|++.||++.|.|..
T Consensus       277 ~~dtv~l~pGer~~v~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~  324 (340)
T 2bw4_A          277 DQETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTG  324 (340)
T ss_dssp             EESCCCBCTTEEEEEEEECCSCEEEEEEESSHHHHHTTSCEEEEEEES
T ss_pred             cceEEEeCCCceEEEEEECCCCeeeEEEcCchHHHHhCCCEEEEEECC
Confidence            47999999999999999999999999999999 599999999999964

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=98.89  E-value=1.8e-09  Score=85.63  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             eeeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEeec
Q psy9698          42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVGD   88 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~~   88 (123)
                      ++||+.|.||+.+++.|.+++||.|++|||...|. +.||++.|+|..
T Consensus       271 ~~dtv~l~pGer~~v~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~  318 (333)
T 1mzy_A          271 DLETWFIRGGTAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEG  318 (333)
T ss_dssp             EESBCCBCTTEEEEEEEECCSCEEEEEEESSHHHHHTTCCEEEEEEES
T ss_pred             CcceEEECCCceEEEEEEcCCCEEEEEecChhhhHhhCCCEEEEEEcC
Confidence            58999999999999999999999999999999996 999999999964

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.79  E-value=6.8e-09  Score=72.96  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=42.7

Q ss_pred             ceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          41 IVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .++|+..|.||+..++.|.+++||.|.||||+..|.. ||.+.|.|
T Consensus        94 ~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V  138 (139)
T 2aan_A           94 IIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVV  138 (139)
T ss_dssp             EEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEE
T ss_pred             ccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEE
Confidence            5689999999999999999999999999999999999 99999987

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=98.69  E-value=2.6e-08  Score=66.03  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             eeeEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .++..+.||+..+++|.+ +.||.|.||||  .|...||.+.|.|.
T Consensus        61 ~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  104 (105)
T 3cvb_A           61 HSQLMFSPGESYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE  104 (105)
T ss_dssp             EEEEECSTTCEEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             ccccccCCCCeEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence            478899999999999998 79999999999  79999999999985

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*

Probab=98.62  E-value=4.8e-08  Score=88.30  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=48.5

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+|.++|++.|.||+++.|.+.+++||.|++|||+..|.+.||++.|.|..
T Consensus       306 v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~Gm~~~~~V~~  356 (1065)
T 2j5w_A          306 NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQE  356 (1065)
T ss_dssp             ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHTTCEEEEEEEC
T ss_pred             ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhCCCEEEEEEec
Confidence            468899999999999999999999999999999999999999999999964

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=98.57  E-value=9.4e-08  Score=75.83  Aligned_cols=62  Identities=13%  Similarity=0.176  Sum_probs=49.4

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEeeccCccCCCCCCC-CCCcc
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVGDRKQFVRAPPHF-PQCDN  104 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~~~~~~~~~p~~~-~~C~~  104 (123)
                      .|..+|++.|.||+.++|.|.+++||.|++|||...|. ..||.+++.|...    +.|+-| ..|.+
T Consensus       257 ~p~~~d~l~l~pGer~dv~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~----~~~~~~~~~~~~  320 (327)
T 1kbv_A          257 INENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGA----ENPEIMTQKLSD  320 (327)
T ss_dssp             EECSBSEEEECTTEEEEEEEEECSCEEEEEEESSTHHHHHSSCEEEEEEESC----CCTTTC------
T ss_pred             CCCceeEEEECCCCEEEEEEEeCCCeEEEEEeccccccccCCcEEEEEECCC----CCchhccCcccc
Confidence            47899999999999999999999999999999999995 8899999999632    234444 35654

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=98.52  E-value=1.7e-07  Score=74.10  Aligned_cols=47  Identities=15%  Similarity=0.161  Sum_probs=43.9

Q ss_pred             eeeeEEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEeec
Q psy9698          42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVGD   88 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~~   88 (123)
                      +.||+.|+||+.+.+.+.+++||.|++|||...|. ..||++.|.|..
T Consensus       271 ~~dtv~i~pGer~dvlv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~  318 (336)
T 1oe1_A          271 DLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEG  318 (336)
T ss_dssp             EESBCCBCTTEEEEEEEECCSCEEEEEEESSHHHHHTTSCEEEEEEES
T ss_pred             cceEEEECCCCcEEEEEEcCCCceEEEEechhhccccCCCeEEEEECC
Confidence            47999999999999999999999999999999885 999999999963

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=98.42  E-value=9.9e-08  Score=77.95  Aligned_cols=50  Identities=22%  Similarity=0.432  Sum_probs=42.9

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeec---CccccccCceEEEEeeccCccC
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCH---FVMHTDTGMTLVFQVGDRKQFV   93 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCH---i~~H~~~GM~~~~~V~~~~~~~   93 (123)
                      ++..|+||++.+++|.+++||.|.||||   +..|...||.+.|.|.+.+.++
T Consensus        99 ~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~~~~  151 (442)
T 2zoo_A           99 ESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGLA  151 (442)
T ss_dssp             GGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCCC
T ss_pred             ccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCccEEEEEEeCCCCCC
Confidence            4567999999999999999999999996   5789999999999997544333

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.40  E-value=1.9e-07  Score=62.08  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             eeeEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .|++.+.||+...+.|.+ +.||.|.||||  .|...||.+.+.|.
T Consensus        62 ~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~  105 (106)
T 2gim_A           62 HKQLLMSPGQSTSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA  105 (106)
T ss_dssp             BCSCCCSTTCEEEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             ccceeeCCCCEEEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence            467889999999999888 79999999999  89999999999985

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=98.35  E-value=6.1e-07  Score=62.81  Aligned_cols=48  Identities=21%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+.+|..|.||+...+.|.++.||.|.|||++..|...||.+.+.|.
T Consensus        92 ~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~  139 (140)
T 1qhq_A           92 NALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  139 (140)
T ss_dssp             TEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             cccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence            346789999999999999999999999999999999999999999885

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=98.32  E-value=4.9e-07  Score=70.50  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCc---cccccCceEEEEeeccCccC
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFV---MHTDTGMTLVFQVGDRKQFV   93 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~---~H~~~GM~~~~~V~~~~~~~   93 (123)
                      +...|+||++.+.+|.+++||.|.||||..   .|...||.+.+.|.+.+..+
T Consensus       107 ~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~~~  159 (288)
T 3gdc_A          107 GAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP  159 (288)
T ss_dssp             TTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECSSCCC
T ss_pred             cceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcCeEEEEEeCCccCC
Confidence            346789999999999999999999999997   68999999999997654333

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.17  E-value=3.2e-06  Score=55.32  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .+++.+.||+..++.|  +.||.|.|||+  .|...||.+.+.|
T Consensus        58 ~~~~~~~pG~~~~~tf--~~~G~y~~~C~--~H~~~gM~G~i~V   97 (98)
T 1pcs_A           58 HKGLLFAAGESFTSTF--TEPGTYTYYCE--PHRGAGMVGKVVV   97 (98)
T ss_dssp             EEEEECSTTCEEEEEC--CSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred             ccccccCCCCEEEEEc--CCCeEEEEEcC--CccccCCeEEEEE
Confidence            4688899999988877  79999999999  7999999999987

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=98.11  E-value=3.8e-06  Score=68.53  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccc-cccCceEEEEeec
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMH-TDTGMTLVFQVGD   88 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H-~~~GM~~~~~V~~   88 (123)
                      .|.+.|++.|.||+.+.+.|.+++||.|.+|||...| ...||++.|.|..
T Consensus       247 ~p~~~~~~~l~pg~r~~v~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~  297 (442)
T 2zoo_A          247 KNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEG  297 (442)
T ss_dssp             EECSBSEEEECTTEEEEEEEECCSCEEEEEEESSTHHHHTTSCEEEEEEES
T ss_pred             CCccceEEEECCCeeEEEEEEcCCCCeEEEEecccccccccCceEEEEecC
Confidence            3788999999999999999999999999999999999 5899999999964

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=98.10  E-value=2.2e-06  Score=67.88  Aligned_cols=49  Identities=20%  Similarity=0.403  Sum_probs=41.9

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecC---ccccccCceEEEEeeccCccCC
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHF---VMHTDTGMTLVFQVGDRKQFVR   94 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi---~~H~~~GM~~~~~V~~~~~~~~   94 (123)
                      ..|.||++.+++|.+++||.|.||||.   ..|...||.+.+.|.+.+.+|+
T Consensus       111 ~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~~~p~  162 (327)
T 1kbv_A          111 TFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPK  162 (327)
T ss_dssp             TCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCCCC
T ss_pred             eeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcceEEEEEEecCCCCCC
Confidence            358999999999999999999999997   5789999999999976443443

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.10  E-value=5e-06  Score=54.32  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=35.6

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +|+..+.||+..++.|  +.||.|.|||+  .|...||.+.+.|
T Consensus        58 ~~~~~~~pG~~~~~tf--~~~G~y~y~C~--~H~~~gM~G~i~V   97 (98)
T 2plt_A           58 RDDYLNAPGETYSVKL--TAAGEYGYYCE--PHQGAGMVGKIIV   97 (98)
T ss_dssp             EEEEECSTTCEEEEEC--CSCEEEEEECG--GGGGGTCEEEEEE
T ss_pred             ccceecCCCCEEEEEe--CCCeEEEEEcC--CccccCCeEEEEE
Confidence            5678899999988866  59999999999  7999999999987

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=98.08  E-value=7.2e-06  Score=55.14  Aligned_cols=42  Identities=7%  Similarity=0.067  Sum_probs=37.3

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +..+.||+...+.|.++.||.|.||||...|... |.+.+.|.
T Consensus        70 ~~~i~pG~~~~~~f~~~~~G~y~~~C~~~~~~~~-M~g~i~V~  111 (112)
T 1iby_A           70 QEVIKAGETKTISFTADKAGAFTIWCQLHPKNIH-LPGTLNVV  111 (112)
T ss_dssp             EEEECTTCEEEEEEECCSCEEEEEBCSSSCTTTB-CCEEEEEE
T ss_pred             eeEeCCCCEEEEEEECCCCEEEEEECCCCCchHH-CEEEEEEe
Confidence            6678999999999999999999999999887554 99999885

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=98.08  E-value=6.4e-06  Score=52.89  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=35.6

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .++..+.||+...+.|  +.||.|.|||+  .|...||.+.+.|
T Consensus        51 ~~~~~~~~g~~~~~~f--~~~G~y~~~C~--~H~~~gM~g~i~V   90 (91)
T 1bxv_A           51 HKDLAFSPGETFEATF--SEPGTYTYYCE--PHRGAGMVGKIVV   90 (91)
T ss_dssp             EEEEECSTTCEEEEEC--CSCEEEEEECT--TTGGGTCEEEEEE
T ss_pred             cccceeCCCCEEEEEe--CCCEEEEEEeC--CCccCCCEEEEEE
Confidence            5778899999888876  89999999999  8998999999987

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=97.98  E-value=7.1e-06  Score=64.77  Aligned_cols=43  Identities=26%  Similarity=0.320  Sum_probs=39.5

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCc-----cccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFV-----MHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~-----~H~~~GM~~~~~V~~~   89 (123)
                      .|.||++.+++|.++++|.|.||||..     .|...||.+.+.|.+.
T Consensus       106 ~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~  153 (333)
T 1mzy_A          106 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPR  153 (333)
T ss_dssp             CBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECT
T ss_pred             EeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhCCCEEEEEEccC
Confidence            589999999999999999999999997     6999999999999743

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=97.97  E-value=5.9e-06  Score=53.96  Aligned_cols=40  Identities=25%  Similarity=0.522  Sum_probs=35.7

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .++..+.||+...+.|  +.||.|.|||+  .|.+.||.+.+.|
T Consensus        57 ~~~~~~~~g~~~~~tf--~~~G~y~y~C~--~H~~~gM~G~i~V   96 (97)
T 1b3i_A           57 NTKLAIAPGSFYSVTL--GTPGTYSFYCT--PHRGAGMVGTITV   96 (97)
T ss_dssp             BCCCCCSCSCCEEEEC--CSCSEEEEECS--STTTTTCEEEEEE
T ss_pred             ccceecCCCCEEEEEe--CCCeEEEEEcc--ChhhcCCEEEEEE
Confidence            4677889999988877  89999999999  8999999999987

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=97.97  E-value=5.2e-06  Score=67.61  Aligned_cols=50  Identities=24%  Similarity=0.329  Sum_probs=42.6

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCc---cccccCceEEEEeeccCccC
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFV---MHTDTGMTLVFQVGDRKQFV   93 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~---~H~~~GM~~~~~V~~~~~~~   93 (123)
                      +++.|.||++.+++|.+++||.|.||||..   .|...||.+.+.|.+.+.+|
T Consensus       234 ~~~~i~pG~~~~~~~~~~~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~~~P  286 (447)
T 2dv6_A          234 AFTQTDPGEETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGLP  286 (447)
T ss_dssp             GGCCBCTTCEEEEEEECCSCEEEEEECCSSSHHHHHHTTCEEEEEEECTTCSC
T ss_pred             ccEEeCCCCEEEEEEECCCCeEEEEEeCCCChHHHHhCCCEEEEEEeCCCCCC
Confidence            566799999999999999999999999974   67889999999997543344

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=97.88  E-value=1.4e-05  Score=63.03  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.0

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCc----cccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFV----MHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~----~H~~~GM~~~~~V~~~   89 (123)
                      .|.||++.+.+|.++++|.|.||||..    .|...||.+.+.|.+.
T Consensus       107 ~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~  153 (336)
T 1oe1_A          107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPR  153 (336)
T ss_dssp             CBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECT
T ss_pred             EeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCCCeEEEEEecC
Confidence            589999999999999999999999984    6899999999999743

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=97.86  E-value=1.5e-05  Score=52.19  Aligned_cols=40  Identities=25%  Similarity=0.401  Sum_probs=34.5

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ++++.+.||+..++.|  +.||.|.|||+  .|.+.||.+.+.|
T Consensus        59 ~~~~~~~~G~~~~~~f--~~~G~y~~~C~--~H~~~gM~G~i~V   98 (99)
T 1byp_A           59 EEDLLNAPGEEYSVTL--TEKGTYKFYCA--PHAGAGMVGKVTV   98 (99)
T ss_dssp             TTCCBCSTTCEEEEEE--CSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred             ccceeeCCCCEEEEEe--CCCcEEEEEcC--CccccCCEEEEEE
Confidence            4556788999888866  59999999999  7999999999987

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=97.86  E-value=1.1e-05  Score=53.16  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +++.+.||+..++.|  +.||.|.|||+  .|...||.+.+.|
T Consensus        63 ~~~~~~pG~~~~~tf--~~~G~y~y~C~--~H~~~gM~G~i~V  101 (102)
T 1kdj_A           63 NDLLSEDEPSFKAKV--STPGTYTFYCT--PHKSANMKGTLTV  101 (102)
T ss_dssp             TCCBBTTBCEEEECC--CSCEEEEEECS--TTGGGTCEEEEEE
T ss_pred             cceecCCCCEEEEEe--CCCeEEEEEeC--CCcccCCeEEEEE
Confidence            567788999888877  89999999999  9999999999987

>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...

Probab=97.68  E-value=3.9e-05  Score=60.54  Aligned_cols=43  Identities=28%  Similarity=0.451  Sum_probs=39.0

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCc----cccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFV----MHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~----~H~~~GM~~~~~V~~~   89 (123)
                      .|.||++.+++|.++++|.|.||||..    .|...||.+.+.|.+.
T Consensus       113 ~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~  159 (340)
T 2bw4_A          113 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPR  159 (340)
T ss_dssp             CBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECT
T ss_pred             EeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCcCEEEEEEccC
Confidence            489999999999999999999999986    5889999999999754

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=97.66  E-value=4.9e-05  Score=54.61  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=36.2

Q ss_pred             EeCCCC--EEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          47 GNLPSG--YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        47 ~v~pg~--~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .|.||+  ..++.|.+ .||.+.||||+..|...||.+.+.|
T Consensus       113 ~i~PG~sgt~t~tft~-~pGtY~y~C~~~gH~~~GM~G~IiV  153 (154)
T 2cal_A          113 VPKDGKFGYTDFTWHP-TAGTYYYVCQIPGMAATGMFGKIVV  153 (154)
T ss_dssp             CCBTTBEEEEEEEECC-CSEEEEEECCSTTTGGGTCEEEEEE
T ss_pred             ccCCCCceEEEEEEEE-CCceEEEECCCCCHHHCCCEEEEEE
Confidence            567899  99999999 9999999999999999999999987

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=97.63  E-value=4.9e-05  Score=49.73  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +.+.+.||+..++.|  +.||.|.|+|+  .|...||.+.+.|
T Consensus        60 ~~~~~~~G~~~~~tf--~~~G~y~~~C~--~H~~~gM~G~i~V   98 (99)
T 1plc_A           60 EDLLNAKGETFEVAL--SNKGEYSFYCS--PHQGAGMVGKVTV   98 (99)
T ss_dssp             TCCBCSTTCEEEEEC--CSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred             CccccCCCCEEEEEE--CCCceEEEEcC--CCcccCCEEEEEE
Confidence            446678999888866  59999999999  7999999999987

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=97.61  E-value=0.00011  Score=48.39  Aligned_cols=41  Identities=20%  Similarity=0.166  Sum_probs=36.5

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ...+.||....+.|.++.||.+.|+|.  .|...||.+.+.|.
T Consensus        60 ~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i~Ve  100 (100)
T 4hci_A           60 DVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKVIVK  100 (100)
T ss_dssp             EEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred             ceeecCCcceeEEEecccCceEEEECc--cccCCCCEEEEEEC
Confidence            456789999999999999999999996  59999999999873

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*

Probab=97.40  E-value=0.00018  Score=55.49  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=38.8

Q ss_pred             EEeCCCCEEEEEEEecC-------------CceEEEeecCc------cccccCceEEEEeeccC
Q psy9698          46 VGNLPSGYTVVRVHFNN-------------PGMWYFHCHFV------MHTDTGMTLVFQVGDRK   90 (123)
Q Consensus        46 v~v~pg~~~~irf~adn-------------pG~Wl~HCHi~------~H~~~GM~~~~~V~~~~   90 (123)
                      ..|.||+..+.+|.++.             +|.|.||||..      .|...||.+.+.|.+..
T Consensus        79 ~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~  142 (276)
T 3kw8_A           79 SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG  142 (276)
T ss_dssp             CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT
T ss_pred             CCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCC
Confidence            46889999999999975             58999999984      57899999999997543

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}

Probab=97.37  E-value=0.0002  Score=56.53  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccc--c-ccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMH--T-DTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H--~-~~GM~~~~~V~~~   89 (123)
                      ..|.||++.+.+|.++.+|.|.||||....  . ..||.+.|.|.+.
T Consensus        80 ~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~  126 (318)
T 3g5w_A           80 HAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPK  126 (318)
T ss_dssp             CCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHHSCCEEEEEEECS
T ss_pred             ccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhccCCCEEEEEEcCC
Confidence            468999999999999999999999998543  2 4799999999754

>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*

Probab=97.25  E-value=0.00052  Score=57.71  Aligned_cols=43  Identities=21%  Similarity=0.386  Sum_probs=40.3

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.++.+|.|.||||...+...||.+.|.|.+.
T Consensus        82 ~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~  124 (552)
T 1aoz_A           82 AINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPP  124 (552)
T ss_dssp             CBCTTCEEEEEEECCSCEEEEEEECSTTTGGGTCEEEEEEECC
T ss_pred             CcCCCCeEEEEEECCCCEEEEEEECchhHHhccCeeeEEEeCC
Confidence            5899999999999999999999999999999999999999754

>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}

Probab=97.17  E-value=0.00058  Score=54.11  Aligned_cols=45  Identities=18%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCcc--ccc-cCceEEEEeecc
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVM--HTD-TGMTLVFQVGDR   89 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~--H~~-~GM~~~~~V~~~   89 (123)
                      ...|.||++.+++|.++.+|.|.||||...  +.. .||.+.+.|.+.
T Consensus        80 q~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~  127 (339)
T 2zwn_A           80 QQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPK  127 (339)
T ss_dssp             BCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEECS
T ss_pred             cCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcCCceEeEEecCC
Confidence            356899999999999999999999999866  677 899999998643

>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*

Probab=97.13  E-value=0.00066  Score=57.38  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             EeCC-CCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLP-SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~p-g~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+| |++.+.+|.++.+|.+.||||...|...||.+.|.|.++
T Consensus       115 ~I~P~G~~~~Y~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~  158 (559)
T 2q9o_A          115 PIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGP  158 (559)
T ss_dssp             CBCTTTEEEEEEEECCSCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred             ccCCCCCeEEEEEECCCCEEEEEEEcccchhcCCceEEEEecCC
Confidence            4899 999999999999999999999999999999999999754

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=97.04  E-value=0.0013  Score=42.85  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ...+.||+..++.|  +.||.+.|+|-+  |...||.+.+.|
T Consensus        60 ~~~~~~g~~~~~tf--~~~G~y~y~C~~--H~~~gM~G~I~V   97 (98)
T 1iuz_A           60 DYLNSKGETVVRKL--STPGVYGVYCEP--HAGAGMKMTITV   97 (98)
T ss_dssp             EEECSTTCEEEEEC--CSCEEEEEECTT--TGGGTCEEEEEE
T ss_pred             ccccCCCCEEEEEc--CCCEEEEEEchh--hccCCCEEEEEE
Confidence            36788999888776  799999999986  999999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.01  E-value=0.0011  Score=57.15  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=35.9

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecC---ccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHF---VMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi---~~H~~~GM~~~~~V~~   88 (123)
                      ..+.||+...+.|.++.||.|.||||.   ..|.  ||.+.+.|.+
T Consensus       549 ~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H~--gM~G~IiV~p  592 (595)
T 1fwx_A          549 MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHM--EMRGRMLVEP  592 (595)
T ss_dssp             EEECTTCEEEEEEECCSCEEEEEECCSCCSTTCT--TCEEEEEEEC
T ss_pred             eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCcc--CCEEEEEEEc
Confidence            568899999999999999999999994   4564  9999999964

>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}

Probab=96.98  E-value=0.00087  Score=52.43  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=36.0

Q ss_pred             EeCCCCEEEEEEEec-------------CCceEEEeecCcc------ccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFN-------------NPGMWYFHCHFVM------HTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~ad-------------npG~Wl~HCHi~~------H~~~GM~~~~~V~~~   89 (123)
                      .|.||++.+.+|.+.             .+|.|.||||...      +...||.+.|.|.++
T Consensus       102 ~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~  163 (299)
T 3t9w_A          102 AVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQ  163 (299)
T ss_dssp             CBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECT
T ss_pred             ccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhcccccceEEEecc
Confidence            578999999999876             5699999999743      567899999999754

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=96.98  E-value=0.00067  Score=47.33  Aligned_cols=40  Identities=28%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      +.+.||+..++.|  +.||.+.|+|-  .|...||.+.+.|+++
T Consensus        57 ~~~~pg~t~s~TF--~~~G~y~Y~C~--~H~~~GM~G~I~V~~p   96 (124)
T 3ef4_A           57 VKGGFSKEVVFNA--EKEGLYVLKCA--PHYGMGMVVLVQVGKP   96 (124)
T ss_dssp             CBCCTTCCEEEEC--CSSEEEEEECT--TTGGGTCEEEEEESSC
T ss_pred             cccCCCCEEEEEe--CCCeEEEEEcC--CCCcCCCEEEEEECCC
Confidence            3456777766666  89999999996  8999999999999853

>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*

Probab=96.96  E-value=0.0011  Score=52.13  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             EEeCCCCEEEEEEEecC-------------CceEEEeecCcc------ccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNN-------------PGMWYFHCHFVM------HTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adn-------------pG~Wl~HCHi~~------H~~~GM~~~~~V~~~   89 (123)
                      ..|.||++.+.+|.+..             .|.|.||||...      |...||.+.|.|.++
T Consensus        85 ~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~  147 (313)
T 3tas_A           85 SDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK  147 (313)
T ss_dssp             CCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECT
T ss_pred             CCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhccccCceEeecc
Confidence            45889999999998764             489999999743      357899999999754

>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*

Probab=96.93  E-value=0.0011  Score=55.25  Aligned_cols=43  Identities=16%  Similarity=0.274  Sum_probs=39.5

Q ss_pred             EeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|. ++.+|.+.||||...+...||.+.|.|.++
T Consensus        86 ~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~  129 (503)
T 1hfu_A           86 PISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDD  129 (503)
T ss_dssp             CBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             CcCCCCeEEEEEEeCCCCccEEEEecchhhhhCcceeeEEEcCC
Confidence            4899999999999 688999999999999999999999999754

>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*

Probab=96.91  E-value=0.0016  Score=54.56  Aligned_cols=43  Identities=19%  Similarity=0.312  Sum_probs=39.7

Q ss_pred             EeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.+ +.+|.+.||||...+...||.+.|.|.++
T Consensus        86 pI~PG~s~tY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~  129 (499)
T 3pxl_A           86 PISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP  129 (499)
T ss_dssp             CBCTTCEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             CCCCCCeEEEEEEcCCCCceeeeeccchhHHhccceeEEEEcCC
Confidence            58999999999999 78999999999999999999999999754

>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*

Probab=96.91  E-value=0.0016  Score=54.45  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=39.7

Q ss_pred             EeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.+ +.+|.+.||||...+...||.+.|.|.++
T Consensus        87 pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~  130 (495)
T 3t6v_A           87 PIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDP  130 (495)
T ss_dssp             CBCTTCEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             CCCCCCeEEEEEEeCCCCceeeeeccchhHHhcCceEEEEEcCc
Confidence            48999999999999 78999999999999999999999999754

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3

Probab=96.91  E-value=0.0013  Score=55.10  Aligned_cols=43  Identities=21%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             EeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|. ++.+|.+.||||...+...||.+.|.|.++
T Consensus       107 ~I~PG~s~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~  150 (521)
T 1v10_A          107 PIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDP  150 (521)
T ss_dssp             CBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             CcCCCCeEEEEEecCCCCccEEEEeccCCchhcCceEEEEEcCC
Confidence            4899999999999 688999999999999999999999999754

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=96.88  E-value=0.0012  Score=45.83  Aligned_cols=39  Identities=28%  Similarity=0.459  Sum_probs=33.0

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +.+.||+..++.|  +.||.|.|+|.  .|...||.+.+.|++
T Consensus        56 f~~~pg~t~s~TF--~~pG~y~y~C~--~H~~~GM~G~I~V~~   94 (123)
T 3erx_A           56 FKSKINESYTLTV--TEPGLYGVKCT--PHFGMGMVGLVQVGD   94 (123)
T ss_dssp             CBCCTTCCEEEEE--CSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred             eecCCCCEEEEEe--CCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence            3456787776666  89999999999  899999999999975

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=96.82  E-value=0.0016  Score=43.14  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=28.3

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .+.||+...+.|  +.||.+.|||++  |.  ||.+.+.|
T Consensus        71 ~~~pG~~~~~tf--~~~G~y~y~C~~--H~--gM~G~i~V  104 (105)
T 2ov0_A           71 MMKKEQAYSLTF--TEAGTYDYHCTP--HP--FMRGKVVV  104 (105)
T ss_dssp             CBCTTEEEEEEE--CSCEEEEEECSS--CT--TCEEEEEE
T ss_pred             ccCCCCEEEEEe--CCCEEEEEEeCC--CC--CCEEEEEE
Confidence            477888777666  899999999987  54  99999887

>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A

Probab=96.81  E-value=0.0008  Score=55.37  Aligned_cols=44  Identities=11%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             EEeCCCCEEEEEEEecC-CceEEEeecC----ccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNN-PGMWYFHCHF----VMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adn-pG~Wl~HCHi----~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||++.+.+|.++. +|.|.||||.    ..+...||.+.+.|.+.
T Consensus        91 ~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~  139 (451)
T 2uxt_A           91 RMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDE  139 (451)
T ss_dssp             GCBCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTTCEEEEEEECH
T ss_pred             CcCCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhcceEEEEEecC
Confidence            46889999999999987 9999999999    66889999999999754

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}

Probab=96.77  E-value=0.0016  Score=51.84  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=37.2

Q ss_pred             EEeCCCCEEEEEEEecCC-------------ceEEEeecC------ccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNNP-------------GMWYFHCHF------VMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adnp-------------G~Wl~HCHi------~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||+..+.+|.++.|             |.|.||||.      ..+...||.+.+.|.+.
T Consensus       120 ~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~~~  182 (343)
T 3cg8_A          120 SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRK  182 (343)
T ss_dssp             CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECT
T ss_pred             ccccCCCEEEEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEecC
Confidence            368999999999998765             889999997      35788999999988754

>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}

Probab=96.76  E-value=0.0026  Score=54.40  Aligned_cols=43  Identities=14%  Similarity=0.282  Sum_probs=40.2

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.++.+|.+.||||...+...||.+.|.|.++
T Consensus       146 pI~PG~sftY~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p  188 (580)
T 3sqr_A          146 PIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP  188 (580)
T ss_dssp             CBCTTCEEEEEEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred             CCCCCCeEEEEEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence            5899999999999999999999999999999999999999754

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=96.76  E-value=0.0011  Score=46.27  Aligned_cols=39  Identities=23%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +.+.||+..++.|  +.||.+.|+|.  .|...||.+.+.|++
T Consensus        58 f~s~pGet~s~TF--~~pG~y~y~C~--~H~~~GM~G~I~V~~   96 (127)
T 3tu6_A           58 WKGKINEEITVTL--SKPGVYMYQCA--PHVGMGMIGAIVVGE   96 (127)
T ss_dssp             CBCCTTCCCEEEC--CSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred             eecCCCCEEEEEe--CCCeEEEEEeC--CCCcCCcEEEEEECc
Confidence            4456787766655  89999999999  699999999999975

>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0024  Score=53.71  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=40.1

Q ss_pred             EeCCCCEEEEEEEec-CCceEEEeecCccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFN-NPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~ad-npG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.++ .+|.+.||||...+...||.+.|.|.+.
T Consensus        82 pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~  125 (534)
T 1zpu_A           82 PIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDD  125 (534)
T ss_dssp             CBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECT
T ss_pred             CcCCCCeEEEEEEeCccceeEEEEEcCcccccCcceeeEEeCCC
Confidence            589999999999998 8999999999999999999999999754

>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}

Probab=96.69  E-value=0.0019  Score=53.07  Aligned_cols=44  Identities=16%  Similarity=0.143  Sum_probs=39.6

Q ss_pred             EEeCCCCEEEEEEEec-CCceEEEeec----CccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFN-NPGMWYFHCH----FVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~ad-npG~Wl~HCH----i~~H~~~GM~~~~~V~~~   89 (123)
                      ..|.||++.+.+|.+. .+|.+.||||    ...+...||.+.+.|.+.
T Consensus        79 ~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~q~~~Gl~G~liV~~~  127 (448)
T 3aw5_A           79 FAITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDS  127 (448)
T ss_dssp             GCBCTTCEEEEEEECCSCSEEEEEEECCTTTHHHHHHTTCCEEEEEECT
T ss_pred             ccCCCCCEEEEEEEcCCCCCceEeccCCCCchHHHHhccceEEEEEeCC
Confidence            4688999999999998 7999999999    677889999999999754

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3

Probab=96.64  E-value=0.0026  Score=49.61  Aligned_cols=45  Identities=4%  Similarity=-0.020  Sum_probs=38.7

Q ss_pred             eEEeCCCCEEEEEEEecCC----------ceEEEeecCcc--ccccCceEEEEeecc
Q psy9698          45 TVGNLPSGYTVVRVHFNNP----------GMWYFHCHFVM--HTDTGMTLVFQVGDR   89 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnp----------G~Wl~HCHi~~--H~~~GM~~~~~V~~~   89 (123)
                      ...|+||+..+.+|.++.+          |.|.||||...  +...||.+.+.|.+.
T Consensus       111 ~~~I~PG~~~~Y~f~~~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~  167 (306)
T 1sdd_A          111 DDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKK  167 (306)
T ss_dssp             TTCBCTTCEEEEEEECCGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECT
T ss_pred             CCccCCCCeEEEEEEeCCccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccC
Confidence            4678999999999999654          89999999876  778999999999754

>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A

Probab=96.29  E-value=0.0037  Score=51.00  Aligned_cols=43  Identities=14%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             EeCCCCEEEEEEEe--cCCceEEEeecC----ccccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHF--NNPGMWYFHCHF----VMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~a--dnpG~Wl~HCHi----~~H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.+  +.+|.|.||||.    ..+...||.+.+.|.+.
T Consensus        88 ~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~  136 (439)
T 2xu9_A           88 EIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESS  136 (439)
T ss_dssp             CBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCEEEEECCG
T ss_pred             cCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeEEEEEcCc
Confidence            48999999999996  469999999998    45888999999999753

>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...

Probab=96.15  E-value=0.0043  Score=51.99  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=38.2

Q ss_pred             EEeCCCCEEEEEEEecC-CceEEEeecC----ccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNN-PGMWYFHCHF----VMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adn-pG~Wl~HCHi----~~H~~~GM~~~~~V~~~   89 (123)
                      ..|.||++.+.+|.++. +|.+.||||.    ..+...||.+.+.|.+.
T Consensus        89 ~~i~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~  137 (488)
T 3od3_A           89 GIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDD  137 (488)
T ss_dssp             CCBCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECH
T ss_pred             CcCcCCCeEEEEEecCCCceeEEEEecCCCcchhhhhccceeEEEEcCc
Confidence            36889999999999988 5999999998    45778999999999754

>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}

Probab=96.10  E-value=0.0066  Score=50.67  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=38.3

Q ss_pred             EEeCCCCEEEEEEEecC--CceEEEeecC----ccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFNN--PGMWYFHCHF----VMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~adn--pG~Wl~HCHi----~~H~~~GM~~~~~V~~~   89 (123)
                      ..|+||++.+.+|.+..  +|.+.||||.    ..+...||.+.+.|.+.
T Consensus       123 ~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~  172 (481)
T 3zx1_A          123 DPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAK  172 (481)
T ss_dssp             SCBCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCCCeEEEEEeCCCCCCceEEEeecCCCcchhhhhccceEEEEEcCc
Confidence            36789999999999976  7999999997    45788999999999754

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=96.10  E-value=0.01  Score=41.35  Aligned_cols=44  Identities=14%  Similarity=0.087  Sum_probs=39.4

Q ss_pred             eeeEEeCCCCEEEEEEEec---CCceEEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHFN---NPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~ad---npG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+..|.||++..+.|.+.   .||.+-|.|-+-.|.. ||.+.+.|.
T Consensus        82 ~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~  128 (129)
T 1cuo_A           82 AFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE  128 (129)
T ss_dssp             EECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred             eeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence            3566789999999999997   9999999999999988 899999885

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=96.09  E-value=0.0082  Score=43.85  Aligned_cols=45  Identities=18%  Similarity=0.071  Sum_probs=39.9

Q ss_pred             eeeeEEeCCCCEEEEEEEec--CCceEEEeecCccccccCceEEEEee
Q psy9698          42 VKDTVGNLPSGYTVVRVHFN--NPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~ad--npG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ...+..|.||+...+.|.+.  .||.+-|+|-+-.|.. ||.+.|.|.
T Consensus       120 l~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~  166 (167)
T 3ay2_A          120 VAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV  166 (167)
T ss_dssp             EEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred             hccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence            34566789999999999987  8999999999999988 999999885

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=96.06  E-value=0.0058  Score=42.15  Aligned_cols=39  Identities=31%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +.+.||+..++.|  +.||.+.|+|.  .|...||.+.+.|.+
T Consensus        56 ~~~~pG~t~~~tF--~~~G~y~y~C~--~H~~~gM~G~I~V~~   94 (123)
T 1pmy_A           56 VKTTVGQEAVVKF--DKEGVYGFKCA--PHYMMGMVALVVVGD   94 (123)
T ss_dssp             CBCCTTSCEEEEC--CSCEEEEEECS--TTTTTTCEEEEEESS
T ss_pred             eecCCCCEEEEEe--CCCeEEEEEeC--CccccCCEEEEEEcC
Confidence            3456788766555  79999999997  599999999999974

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=96.02  E-value=0.0066  Score=41.85  Aligned_cols=38  Identities=29%  Similarity=0.511  Sum_probs=30.9

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.||+..++.|  +.||.|.|+|.  .|...||.+.+.|.+
T Consensus        57 ~~~pG~t~~~tF--~~~G~y~y~C~--~H~~~gM~G~I~V~~   94 (123)
T 1paz_A           57 KSKINENYVLTV--TQPGAYLVKCT--PHYAMGMIALIAVGD   94 (123)
T ss_dssp             BCCTTCCEEEEC--CSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred             ecCCCCEEEEEe--CCCEEEEEEeC--CcccCCCEEEEEEcC
Confidence            345777655555  89999999997  599999999999974

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=95.92  E-value=0.0048  Score=54.30  Aligned_cols=45  Identities=9%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             EEeCCCCEEEEEEEec----------CCceEEEeecCcc--ccccCceEEEEeeccC
Q psy9698          46 VGNLPSGYTVVRVHFN----------NPGMWYFHCHFVM--HTDTGMTLVFQVGDRK   90 (123)
Q Consensus        46 v~v~pg~~~~irf~ad----------npG~Wl~HCHi~~--H~~~GM~~~~~V~~~~   90 (123)
                      ..|+||+..+.+|.+.          .+|.|.||||...  |...||.+.|.|.+..
T Consensus       243 ~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~  299 (770)
T 2r7e_B          243 NFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSGLIGPLLVCHTN  299 (770)
T ss_dssp             SCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHHTSCCEEEEEECST
T ss_pred             CccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccCCcHHHHhCCceeeEEECCCc
Confidence            3688999999999987          7899999999876  6789999999997543

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=95.82  E-value=0.013  Score=38.86  Aligned_cols=37  Identities=16%  Similarity=0.110  Sum_probs=29.9

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ++-.+.||+...+.|  +.||.+.|+|-+  |.  ||.+.+.|
T Consensus        69 ~s~~l~~g~~~~~tf--~~~G~y~~~C~~--H~--~M~G~I~V  105 (106)
T 1id2_A           69 RGEMMTKDQAYAITF--NEAGSYDYFCTP--HP--FMRGKVIV  105 (106)
T ss_dssp             ECCCBCTTEEEEEEE--CSCEEEEEECSS--CT--TCEEEEEE
T ss_pred             cccccCCCCEEEEEe--CCCEEEEEEeCC--CC--CCEEEEEE
Confidence            334567888877776  799999999987  65  99999887

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2

Probab=95.39  E-value=0.013  Score=49.96  Aligned_cols=46  Identities=13%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             eEEeCCCCEEEEEEEecC------Cc----eEEEeecCc--cccccCceEEEEeeccC
Q psy9698          45 TVGNLPSGYTVVRVHFNN------PG----MWYFHCHFV--MHTDTGMTLVFQVGDRK   90 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adn------pG----~Wl~HCHi~--~H~~~GM~~~~~V~~~~   90 (123)
                      ...|+||+..+.+|.+..      +|    .|.||||..  .|...||.+.|.|.+..
T Consensus       120 ~~~I~PG~~~tY~f~~~~~~gp~~~G~~c~T~wYHsH~~~~~q~~~GL~G~lIV~~~~  177 (647)
T 1sdd_B          120 DNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKG  177 (647)
T ss_dssp             -CCBCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCSSHHHHHTTTCEEEEEEECTT
T ss_pred             CcccCCCCeEEEEEECCcccCCCCCCCCceEEEEccCCCCcccccccCccCEEEeeCC
Confidence            456899999999999976      58    999999994  57889999999997543

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=95.30  E-value=0.032  Score=38.73  Aligned_cols=45  Identities=20%  Similarity=0.218  Sum_probs=39.3

Q ss_pred             eeeeEEeCCCCEEEEEEEec--CCc-eEEEeecCccccccCceEEEEee
Q psy9698          42 VKDTVGNLPSGYTVVRVHFN--NPG-MWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~ad--npG-~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ...+..|.||++..+.|.+.  .|| .+-|.|-+-.|.. ||.+.+.|.
T Consensus        80 ~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~  127 (128)
T 2iaa_C           80 IAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG  127 (128)
T ss_dssp             EEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred             hccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence            34566789999999999998  899 5999999999999 999999885

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.25  E-value=0.025  Score=39.08  Aligned_cols=37  Identities=16%  Similarity=0.110  Sum_probs=30.1

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ++-.+.||+...+.|  +.||.+.|+|-+  |.  ||.+.+.|
T Consensus        95 ~s~~l~pG~t~~~tF--~~~G~y~y~C~~--H~--gM~G~I~V  131 (132)
T 3c75_A           95 RGEMMTKDQAYAITF--NEAGSYDYFCTP--HP--FMRGKVIV  131 (132)
T ss_dssp             ECCCBCTTEEEEEEE--CSCEEEEEECSS--CT--TCEEEEEE
T ss_pred             cccccCCCCEEEEEc--CCCEEEEEEeCC--Cc--CCEEEEEE
Confidence            344567888887776  799999999986  65  99999987

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=95.17  E-value=0.039  Score=38.33  Aligned_cols=44  Identities=18%  Similarity=0.193  Sum_probs=38.4

Q ss_pred             eeeEEeCCCCEEEEEEEec--CCce-EEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHFN--NPGM-WYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~ad--npG~-Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+..|.||++..+.|.+.  .||. +-|.|-+-.|.. ||.+.+.|.
T Consensus        82 ~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~  128 (129)
T 2ccw_A           82 AHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG  128 (129)
T ss_dssp             EECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred             eeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence            3566789999999999998  7865 999999999988 899999885

>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*

Probab=94.98  E-value=0.015  Score=48.87  Aligned_cols=43  Identities=12%  Similarity=0.170  Sum_probs=36.9

Q ss_pred             EeCCCCEEEEEEEecC-CceEEEeecCcc----ccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNN-PGMWYFHCHFVM----HTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adn-pG~Wl~HCHi~~----H~~~GM~~~~~V~~~   89 (123)
                      .|+||++.+.+|.++. +|.+.||||...    |...||.+.+.|.+.
T Consensus       111 ~i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~  158 (534)
T 3abg_A          111 ITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDP  158 (534)
T ss_dssp             CBSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECT
T ss_pred             CCCCCCeEEEEEecCCcceeEEEecCccccchhhhhhcceEEEEEECC
Confidence            3789999999999987 589999999864    567999999999764

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=94.64  E-value=0.06  Score=37.36  Aligned_cols=44  Identities=18%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             eeeeEEeCCCCEEEEEEEec--CCce-EEEeecCccccccCceEEEEe
Q psy9698          42 VKDTVGNLPSGYTVVRVHFN--NPGM-WYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~ad--npG~-Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ...|-.|.||++..+.|.+.  .||. +-|.|-+-.|.. ||.+.+.|
T Consensus        81 ~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V  127 (128)
T 1nwp_A           81 IAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTL  127 (128)
T ss_dssp             EEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEE
T ss_pred             heeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEE
Confidence            34555789999999999997  7876 999999999999 89999887

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=94.56  E-value=0.062  Score=37.53  Aligned_cols=43  Identities=14%  Similarity=0.198  Sum_probs=36.8

Q ss_pred             CceeeeEEeCCCCEEEEEEEec---CCceEEEeecCccccccCceEEEEe
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFN---NPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~ad---npG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .+...|..|.||+...+.|.+.   .||.+-|-|.  -|.  ||.+.+.|
T Consensus        79 ~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V  124 (125)
T 3fsa_A           79 RVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTL  124 (125)
T ss_dssp             TCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEE
T ss_pred             cceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEE
Confidence            3667888899999999999987   8999999999  887  99999887

>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A

Probab=94.23  E-value=0.025  Score=47.05  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CEEEEEEEec-CCceEEEeecCcc----ccccCceEEEEeecc
Q psy9698          52 GYTVVRVHFN-NPGMWYFHCHFVM----HTDTGMTLVFQVGDR   89 (123)
Q Consensus        52 ~~~~irf~ad-npG~Wl~HCHi~~----H~~~GM~~~~~V~~~   89 (123)
                      ++.+.+|.++ .+|.+.||||...    |...||.+.|.|.+.
T Consensus       135 ~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~  177 (513)
T 2wsd_A          135 KREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDP  177 (513)
T ss_dssp             CCSEEEECCCSCCEEEEEEECCTTTHHHHHHHTCEEEEEEECG
T ss_pred             ceEEEEEecCCCccceEECCCCCCcchhhhhccCeEEEEEecc
Confidence            6779999986 6999999999853    678899999999754

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=93.58  E-value=0.085  Score=36.04  Aligned_cols=36  Identities=31%  Similarity=0.373  Sum_probs=28.3

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.||+..++.|  +.||.+.|+|-+  |..  |.+.+.|.+
T Consensus        57 ~~~~g~t~~~tF--~~~G~y~y~C~~--H~~--M~G~I~V~~   92 (122)
T 2ux6_A           57 KSKINENYKVTF--TAPGVYGVKCTP--HPF--MVGVVQVGD   92 (122)
T ss_dssp             BCCTTCCEEEEE--CSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred             ecCCCCEEEEEe--CCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence            345677666665  899999999987  666  999999974

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=93.16  E-value=0.19  Score=34.98  Aligned_cols=40  Identities=30%  Similarity=0.454  Sum_probs=32.7

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecC---ccccccCceEEEEee
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHF---VMHTDTGMTLVFQVG   87 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi---~~H~~~GM~~~~~V~   87 (123)
                      +.+.||....+.|.++.||.+.++|..   ..|  .+|.+.+.|.
T Consensus        92 ~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M~g~v~V~  134 (135)
T 2cua_A           92 VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFGTIVVK  134 (135)
T ss_dssp             EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEEEEEEE
T ss_pred             eEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCCEEEEEEE
Confidence            346678888999999999999999976   455  5898888774

>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}

Probab=92.93  E-value=0.11  Score=43.38  Aligned_cols=43  Identities=14%  Similarity=0.220  Sum_probs=36.7

Q ss_pred             EeCCCCEEEEEEEecCC-ceEEEeecCc----cccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNP-GMWYFHCHFV----MHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnp-G~Wl~HCHi~----~H~~~GM~~~~~V~~~   89 (123)
                      .|.||++.+.+|.++.+ |.+-||+|..    .+...||.+.|.|.+.
T Consensus       148 ~I~PG~~~~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~Gl~G~liI~d~  195 (612)
T 3gyr_A          148 AVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDD  195 (612)
T ss_dssp             CBCTTCEEEEEECCCSCSEEEEEEECCTTTHHHHTTTTCEEEEEEECH
T ss_pred             ccCCCCCEEEEEEcCCCCceEEEeeCCCCcchhhhhccceeEEEEcCc
Confidence            57899999999999875 7999999973    4678999999999754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.66  E-value=0.24  Score=43.00  Aligned_cols=42  Identities=17%  Similarity=0.374  Sum_probs=36.7

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCcccc-ccCceEEEEee
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHT-DTGMTLVFQVG   87 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~-~~GM~~~~~V~   87 (123)
                      +.+.||....+.|.++.||.+.++|....|. ..+|.+.+.|.
T Consensus       594 ~DaiPGrtnsvtFtadkPGvY~y~CSE~CGa~Hs~M~G~ViVE  636 (638)
T 3sbq_A          594 MEISPQQTSSITFVADKPGLHWYYCSWFCHALHMEMVGRMMVE  636 (638)
T ss_dssp             EEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTCEEEEEEE
T ss_pred             eeeCCCCeEEEEEEcCCCEEEEEECCCcCCCCcccceEEEEEe
Confidence            4677999999999999999999999987765 36899999886

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=90.79  E-value=0.54  Score=34.10  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=35.2

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecC-ccccccCceEEEEee
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHF-VMHTDTGMTLVFQVG   87 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi-~~H~~~GM~~~~~V~   87 (123)
                      +.+.||....+.|.++.||.+.+.|.. .-+...+|.+.+.|.
T Consensus       125 ~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~V~V~  167 (168)
T 3s8f_B          125 VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGTIVVK  167 (168)
T ss_dssp             EEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred             EEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEEEEEe
Confidence            455689999999999999999999985 556678999988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1aoza3	214	b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (C	8e-15
d2q9oa3	216	b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyce	1e-13
d1gska3	154	b.6.1.3 (A:357-510) Spore coat protein A, CotA {Ba	1e-13
d1gyca3	199	b.6.1.3 (A:301-499) Laccase {Trametes versicolor,	7e-13
d1hfua3	200	b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Copr	2e-12
d1sddb2	139	b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (B	3e-10
d1v10a3	190	b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus	9e-10
d1kcwa2	146	b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sap	9e-10
d2j5wa5	149	b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sa	1e-09
d1kv7a3	181	b.6.1.3 (A:336-516) multi-copper oxidase CueO {Esc	8e-09
d2j5wa2	145	b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sap	4e-08
d1sdda2	116	b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos	7e-07
d1qhqa_	139	b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus	4e-05
d2bw4a2	173	b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcali	0.001
d1e30a_	153	b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidan	0.004

>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Length = 214

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

 Score = 65.3 bits (158), Expect = 8e-15
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 38  PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPP 97
             P +++TV   P G+T +R   +NPG+W FHCH   H   GM +VF  G   +  R P 
Sbjct: 137 KNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVE-KVGRIPT 195

Query: 98  HFPQCDNFQPAVTK 111
               C     ++  
Sbjct: 196 KALACGGTAKSLIN 209

>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId: 204285]} Length = 216

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

 Score = 62.6 bits (151), Expect = 1e-13
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 11/110 (10%)

Query: 1   MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF 60
             +L +    P   +  F        D      R     P  +DT      G+ ++    
Sbjct: 97  FLVLGRSPDVPAASQQRF------VFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRT 150

Query: 61  NNPGMWYFHCHFVMHTDTGMTLVF-----QVGDRKQFVRAPPHFPQCDNF 105
           +NPG W FHCH   H   G+++ F      +  R            CD +
Sbjct: 151 DNPGAWLFHCHIAWHVSGGLSVDFLERPADLRQRISQEDEDDFNRVCDEW 200

>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]} Length = 154

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

 Score = 61.2 bits (148), Expect = 1e-13
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 25  QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLV 83
           +L   GP +         KDT+         +   F    G + +HCH + H D  M   
Sbjct: 90  ELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRP 149

Query: 84  FQVGD 88
             + D
Sbjct: 150 MDITD 154

>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Length = 199

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

 Score = 60.3 bits (145), Expect = 7e-13
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 38  PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF--QVGDRKQFVRA 95
               V  T          +R   +NPG W+ HCH   H + G  +VF   V D K     
Sbjct: 121 IFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVKAANPV 180

Query: 96  PPHFPQ-CDNF 105
           P  +   C  +
Sbjct: 181 PKAWSDLCPIY 191

>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Length = 200

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

 Score = 59.1 bits (142), Expect = 2e-12
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 25  QLDQEGPRLRTTQPRPIVKDTVGNLPSGYTV-VRVHFNNPGMWYFHCHFVMHTDTGMTLV 83
            + +           P+ +D V    +G  V +R   +NPG W+FHCH   H   G+ +V
Sbjct: 103 SVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIV 162

Query: 84  FQV--GDRKQFVRAPPHFPQ-CDNF 105
           F     +       P  + Q C+ +
Sbjct: 163 FAEDMANTVDANNPPVEWAQLCEIY 187

>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Length = 139

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.1 bits (124), Expect = 3e-10
 Identities = 10/57 (17%), Positives = 16/57 (28%)

Query: 30  GPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
           G  L     +         LP  +  + +  + PG W            GM   F +
Sbjct: 82  GQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLI 138

>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId: 219653]} Length = 190

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

 Score = 51.8 bits (123), Expect = 9e-10
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 39  RPIVKDTVGNLPSGYTVV-RVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRAPP 97
            P+ +D V     G  V  R   +NPG W+ HCH   H + G+ +VF          A  
Sbjct: 116 NPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDI-PNIPIANA 174

Query: 98  HFPQCDNFQPA 108
             P  D+  P 
Sbjct: 175 ISPAWDDLCPK 185

>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 9e-10
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 37  QPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
             +    DT+   P+      +   NPG W   C  + H   G+   FQV +
Sbjct: 94  TNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQE 145

>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-09
 Identities = 13/57 (22%), Positives = 18/57 (31%)

Query: 32  RLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD 88
             +         D     P  Y  + +    PG+W  HCH   H   GM   + V  
Sbjct: 92  SFQYKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQ 148

>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Length = 181

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 8e-09
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 39  RPIVKDTVGNLPSGYTVV---RVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
           R   KDTV    +   V+            +  HCH + H DTGM L F V
Sbjct: 131 RAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 181

>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-08
 Identities = 11/52 (21%), Positives = 17/52 (32%)

Query: 35  TTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
           T   R   +DT    P     + +  +  G +   C    H   GM   + V
Sbjct: 91  TYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTV 142

>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.8 bits (100), Expect = 7e-07
 Identities = 6/46 (13%), Positives = 12/46 (26%)

Query: 35  TTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM 80
             +        +  + +  T   +  +  G W        H   GM
Sbjct: 67  VLEQNHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGM 112

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Length = 139

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 38.3 bits (88), Expect = 4e-05
 Identities = 10/46 (21%), Positives = 13/46 (28%)

Query: 41  IVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV 86
            +  T          V      PG + + C F  H   GM     V
Sbjct: 92  ALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 137

>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Length = 173

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 44  DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVM-HTDTGMTLVFQV 86
           +T              F  PG++ +  H ++   + G    F+V
Sbjct: 114 ETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKV 157

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Length = 153

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 1/42 (2%)

Query: 40  PIVKDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGM 80
                +       +      +    G +Y+ C    H  TG 
Sbjct: 105 AGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGHAATGQ 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1aoza3	214	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	99.91
d2q9oa3	216	Laccase {Melanocarpus albomyces [TaxId: 204285]}	99.89
d1v10a3	190	Laccase {Rigidoporus lignosus [TaxId: 219653]}	99.86
d1hfua3	200	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	99.84
d1gyca3	199	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	99.82
d1gska3	154	Spore coat protein A, CotA {Bacillus subtilis [Tax	99.8
d2j5wa5	149	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1kcwa2	146	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1sddb2	139	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	99.58
d2j5wa2	145	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1sdda2	116	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	99.45
d1kv7a3	181	multi-copper oxidase CueO {Escherichia coli [TaxId	99.41
d1kbva2	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	99.33
d2bw4a2	173	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	99.1
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	99.0
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	98.95
d1oe1a2	177	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	98.93
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	98.81
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	98.79
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.78
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	98.72
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	98.72
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	98.66
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	98.3
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	98.29
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	98.2
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	98.03
d1v10a1	136	Laccase {Rigidoporus lignosus [TaxId: 219653]}	97.94
d1kv7a1	140	multi-copper oxidase CueO {Escherichia coli [TaxId	97.77
d2j5wa1	192	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1sddb1	67	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	97.58
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	97.54
d1sdda1	180	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	97.28
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	97.08
d2j5wa3	207	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	96.71
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	96.66
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	96.49
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	96.35
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	96.34
d1gska1	181	Spore coat protein A, CotA {Bacillus subtilis [Tax	96.33
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	96.28
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	96.06
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	95.99
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	95.9
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	95.9
d2j5wa4	179	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	95.84
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	95.81
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	95.81
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	95.76
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	95.51
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	95.5
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	95.41
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	95.08
d1mzya2	178	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	93.87
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	93.73
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	90.32

>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=99.91  E-value=6.9e-26  Score=171.55  Aligned_cols=89  Identities=29%  Similarity=0.556  Sum_probs=77.8

Q ss_pred             CEEEeecCCCCCCCcccccHHHHHHhccCCCccccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCc
Q psy9698           1 MYILKQGKIPPNVDKGLFLSQLIRQLDQEGPRLRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGM   80 (123)
Q Consensus         1 f~vlg~g~~~~~~~~~~~~~~e~~~~~~~g~~~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM   80 (123)
                      |||||+|. +++..           .+    ...+|+.+|.+|||+.|++++|++|||++||||.|+||||+++|++.||
T Consensus       116 F~vl~~~~-g~~~~-----------~~----~~~~n~~~p~~rDTv~v~~g~~~~ir~~adnpG~w~~HCH~~~H~~~GM  179 (214)
T d1aoza3         116 FWVLGYGD-GKFSA-----------EE----ESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGM  179 (214)
T ss_dssp             EEEEEEEE-SSCCG-----------GG----GGGSCCSSCCEESEEEECTTEEEEEEEECCSCEEEEEEESSHHHHHTTC
T ss_pred             eEEeccCC-Ccccc-----------cc----cccccccCCceecCcccCCCceEEEEEecCCCeeEEEEECcHHHHhCcC
Confidence            79999987 34431           11    1257899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCccCCCCCCCCCCccCC
Q psy9698          81 TLVFQVGDRKQFVRAPPHFPQCDNFQ  106 (123)
Q Consensus        81 ~~~~~V~~~~~~~~~p~~~~~C~~~~  106 (123)
                      +++|.|+ .++++++|+++++||.+.
T Consensus       180 ~~~~~v~-~~~~~~~P~~~~~cg~~~  204 (214)
T d1aoza3         180 GVVFAEG-VEKVGRIPTKALACGGTA  204 (214)
T ss_dssp             EEEEEEC-GGGCCCCCHHHHSSHHHH
T ss_pred             cEEEEEc-cccccCCCccccccccch
Confidence            9999997 567888999999999885

>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=99.89  E-value=5.4e-26  Score=171.98  Aligned_cols=72  Identities=25%  Similarity=0.541  Sum_probs=62.5

Q ss_pred             ccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccCccCCC-----CCC-CCCCccCC
Q psy9698          34 RTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQFVRA-----PPH-FPQCDNFQ  106 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~~~~-----p~~-~~~C~~~~  106 (123)
                      .+|+.+|++|||+.|+|++|++|||.+||||.|+||||+++|++.||+++|.+. ++++++.     |.. ...|++|+
T Consensus       124 ~~n~~~p~~rDTv~v~~~g~~~ir~~adnpG~Wl~HCHi~~H~~~GM~~~~~~~-p~~~~~~~~~~~~~~~~~~C~~w~  201 (216)
T d2q9oa3         124 RLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFLER-PADLRQRISQEDEDDFNRVCDEWR  201 (216)
T ss_dssp             GCCCBSCCEESEEEECTTSEEEEEEECCSCEEEEEEECCHHHHHTTCEEEEEEC-HHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCceeceEEeCCCCEEEEEEECCCCeEEEEEccCCcccccCCeEEEEEc-chhhhhcccCCCchhhhccChhhc
Confidence            578999999999999999999999999999999999999999999999999765 4445442     333 47999996

>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=99.86  E-value=4.2e-23  Score=152.49  Aligned_cols=73  Identities=25%  Similarity=0.542  Sum_probs=60.8

Q ss_pred             ccCCCCCceeeeEEeCCCC-EEEEEEEecCCceEEEeecCccccccCceEEEEeeccCcc---CCCCCCC-CCCccCCC
Q psy9698          34 RTTQPRPIVKDTVGNLPSG-YTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQF---VRAPPHF-PQCDNFQP  107 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v~pg~-~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~~---~~~p~~~-~~C~~~~~  107 (123)
                      .+++.+|.+|||+.|++++ +++|||.+||||.|+||||+++|++.||+++|.++. +++   +++|..+ ..|.+|.+
T Consensus       111 ~~~~~~~~~rDTv~v~~~g~~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~  188 (190)
T d1v10a3         111 VYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDI-PNIPIANAISPAWDDLCPKYNA  188 (190)
T ss_dssp             CCCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEEESCHHHHTTTCEEEEEESG-GGHHHHSCCCHHHHTHHHHHTT
T ss_pred             ccccccCcccCEEEeCCCeEEEEEEEEcCCCeeEEEecCchhhhhCCCcEEEEECC-CCCCccCCCCHHHHhhhhhccC
Confidence            3578899999999999875 788999999999999999999999999999999874 333   3444444 58888864

>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=99.84  E-value=9.7e-23  Score=152.42  Aligned_cols=73  Identities=25%  Similarity=0.549  Sum_probs=62.5

Q ss_pred             ccCCCCCceeeeEEeC-CCCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccC--ccCCCCCCC-CCCccCC
Q psy9698          34 RTTQPRPIVKDTVGNL-PSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK--QFVRAPPHF-PQCDNFQ  106 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v~-pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~--~~~~~p~~~-~~C~~~~  106 (123)
                      .+|+.+|.+|||+.|+ +|+|++|||.+||||.|+||||+++|++.||+++|.++..+  ....+|+++ +.|++|+
T Consensus       112 ~~~~~~~~~rDtv~v~~~G~~~~ir~~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~~~~p~~~~~~C~~~~  188 (200)
T d1hfua3         112 TYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPPVEWAQLCEIYD  188 (200)
T ss_dssp             CCCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CCccccCcccceEEeCCCCEEEEEEEECCCCeeeEEEeCCChHHhCCCcEEEEEcCCCcccccCCChhhhccccccc
Confidence            4678899999999996 56799999999999999999999999999999999987421  334577776 5899996

>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=99.82  E-value=8.7e-22  Score=146.99  Aligned_cols=73  Identities=26%  Similarity=0.599  Sum_probs=62.8

Q ss_pred             ccCCCCCceeeeEEe---CCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeecc--CccCCCCCCCC-CCccCC
Q psy9698          34 RTTQPRPIVKDTVGN---LPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDR--KQFVRAPPHFP-QCDNFQ  106 (123)
Q Consensus        34 ~~n~~~p~~rDTv~v---~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~--~~~~~~p~~~~-~C~~~~  106 (123)
                      .+|+.+|.+|||+.+   ++++|++|||.+||||.|+||||+++|++.||+++|.++..  ....++|..+. .|++|+
T Consensus       114 ~~~~~~p~~rdt~~~~~~~~g~~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~~~~p~~~~~~C~~~~  192 (199)
T d1gyca3         114 TYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVKAANPVPKAWSDLCPIYD  192 (199)
T ss_dssp             CCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEETHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             ccCccCcccccceeeeccCCCcEEEEEEECCCCeeEEEEcCchhhHhccCcEEEEEcCCcccccCCCCHHHHhhhhhhc
Confidence            367889999999877   79999999999999999999999999999999999987532  24556788776 799985

>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=9.1e-21  Score=136.30  Aligned_cols=55  Identities=18%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             cccCCCCCceeeeEEeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEee
Q psy9698          33 LRTTQPRPIVKDTVGNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        33 ~~~n~~~p~~rDTv~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +..+..++.||||+.|+|+++++|||+ ++|||.|+||||+++|++.|||+.|.|.
T Consensus        98 ~~~~~~~~~~kDTv~v~pg~~~~i~~~~~d~pG~w~~HCHil~Hed~GMM~~~~V~  153 (154)
T d1gska3          98 VPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDIT  153 (154)
T ss_dssp             BCCCGGGSSCBSEEEECTTEEEEEEEECCSCCEEEEEEESCHHHHTTTCEEEEEEB
T ss_pred             cCCCcccCcccccEEeCCCCEEEEEEEeCCCCcceEEecCcchHhhCcCceEEEEe
Confidence            334455678999999999999999998 7999999999999999999999999985

>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.4e-16  Score=111.71  Aligned_cols=53  Identities=25%  Similarity=0.548  Sum_probs=49.2

Q ss_pred             cCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          35 TTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        35 ~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .....+.++||+.|+||++.+++|.+++||.|+||||+..|++.||++.|.|.
T Consensus        95 ~~~~g~~~~dtv~i~pg~~~~~~~~a~~pG~w~~HCHi~~H~~~GM~~~f~V~  147 (149)
T d2j5wa5          95 YKHRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTVL  147 (149)
T ss_dssp             ETTTTCEEESEEEECTTCEEEEEECCCSCEEEEEEECCHHHHHTTCEEEEEEE
T ss_pred             eeccCCCCcceEEECCCceEEEEEeCCCCeeEEEEcCCHHHHhccCceEEEEe
Confidence            34456789999999999999999999999999999999999999999999985

>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.6e-16  Score=108.53  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=48.2

Q ss_pred             CCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          38 PRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .++.++||+.|+||++.+++|.+++||.|+||||+..|.+.||++.|.|.
T Consensus        95 ~~~~~~dt~~i~pg~~~~v~f~~~~pG~w~~HCH~~~H~~~GM~~~~~V~  144 (146)
T d1kcwa2          95 NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQ  144 (146)
T ss_dssp             CSSSCCSEEEECTTCEEEEEEEECSCEEEEEEECCHHHHHTCCEEEEEEE
T ss_pred             ccCCCcceEEecCCCEEEEEEEcCCCeeEEEEcCCHHHHhcCCeEEEEEE
Confidence            46889999999999999999999999999999999999999999999996

>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=8.1e-16  Score=107.88  Aligned_cols=54  Identities=17%  Similarity=0.310  Sum_probs=49.7

Q ss_pred             cccCCCCCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          33 LRTTQPRPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        33 ~~~n~~~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      +..+..++.++||+.|+||++.+++|++++||.|++|||+..|++.||++.|.|
T Consensus        85 f~~~~~~~~~~dt~~i~pg~~~t~~~~~~~pG~w~~HcH~~~H~~~GM~~~~~V  138 (139)
T d1sddb2          85 LLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLI  138 (139)
T ss_dssp             EEECSSSCEEESSEEECTTEEEEEEEECCSSEEEEEECCCHHHHTTTCEEEEEE
T ss_pred             EEeccCCCCcCCeEEECCCCEEEEEEecCCCEeEEEEeCCHHHHhccCcEEEEE
Confidence            344556788999999999999999999999999999999999999999999987

>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.2e-15  Score=105.43  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=47.0

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ++.++||+.|+||++.+++|++++||.|+||||+..|++.||++.|.|.
T Consensus        95 ~~~~~dt~~i~pg~~~t~~~~a~~pG~w~~HCH~~~H~~~GM~~~~~V~  143 (145)
T d2j5wa2          95 RGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVN  143 (145)
T ss_dssp             TTEEESEEEECTTCEEEEEECCCSCEEEEEEECSHHHHHTTCEEEEEEE
T ss_pred             cccCccceEECCCCEEEEEEEcCCCEeEEEEcCCHHHHhCCCeEEEEEe
Confidence            4678999999999999999999999999999999999999999999996

>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=1.6e-15  Score=103.59  Aligned_cols=46  Identities=13%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             CCceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEE
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVF   84 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~   84 (123)
                      ++.++||+.|+||++.+++|++++||.|++|||++.|++.||++.+
T Consensus        71 ~~~~~dtv~i~pg~~~~v~~~a~~pG~w~~HCH~~~H~~~GM~a~i  116 (116)
T d1sdda2          71 NHHKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYI  116 (116)
T ss_dssp             TTEECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBCCC
T ss_pred             CCcccceEeecccEEEEEEEEcCCCeEEEEEcCCHHHHHccceecC
Confidence            6789999999999999999999999999999999999999999753

>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.8e-14  Score=104.82  Aligned_cols=49  Identities=35%  Similarity=0.474  Sum_probs=41.8

Q ss_pred             CCCceeeeEEeCCCCE-EEEEEEec--CCceEEEeecCccccccCceEEEEe
Q psy9698          38 PRPIVKDTVGNLPSGY-TVVRVHFN--NPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        38 ~~p~~rDTv~v~pg~~-~~irf~ad--npG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .++.|||||.|+|+++ +.|+|.++  ++|.|+||||++.|++.||++.|.|
T Consensus       130 ~~~~~kDTv~v~~~~~~v~v~f~~~~~~~G~w~fHCHil~H~d~GMm~~f~V  181 (181)
T d1kv7a3         130 HRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV  181 (181)
T ss_dssp             GGSSSBSEEEESSSEEEEEECCCSCCCGGGCEEEEESSHHHHHTTCEEEEEC
T ss_pred             cCCcceeEEEeCCCceEEEEEEEeeCCCCCeEEEeCChHHHHhCCCCEEEEC
Confidence            3567999999998765 56788765  4699999999999999999999986

>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=99.33  E-value=9e-13  Score=93.62  Aligned_cols=48  Identities=15%  Similarity=0.139  Sum_probs=43.6

Q ss_pred             ceeeeEEeCCCCEEEEEEEecCCceEEEeecCc-cccccCceEEEEeec
Q psy9698          41 IVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFV-MHTDTGMTLVFQVGD   88 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~-~H~~~GM~~~~~V~~   88 (123)
                      ..+||+.|+||++.+++|++++||.|+||||.+ .|++.||++.|.|..
T Consensus        96 ~~~~T~~v~pg~~~~~~f~a~~PG~y~~h~H~l~~~~~~G~~g~~~V~~  144 (151)
T d1kbva2          96 ENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEG  144 (151)
T ss_dssp             CSBSEEEECTTEEEEEEEEECSCEEEEEEESSTHHHHHSSCEEEEEEES
T ss_pred             ccceeEecccCceeEEeeecCCCceEEEECCcHHHHHhccCeEEEEEcC
Confidence            357999999999999999999999999999976 557899999999964

>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=99.10  E-value=3.9e-11  Score=87.46  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             CCCcee--eeEEeCCCCEEEEEEEecCCceEEEeecC-ccccccCceEEEEeec
Q psy9698          38 PRPIVK--DTVGNLPSGYTVVRVHFNNPGMWYFHCHF-VMHTDTGMTLVFQVGD   88 (123)
Q Consensus        38 ~~p~~r--DTv~v~pg~~~~irf~adnpG~Wl~HCHi-~~H~~~GM~~~~~V~~   88 (123)
                      .+++.+  +|+.|+||+.+++.|.+++||.|+||||. ..|++.||++.|.|..
T Consensus       106 ~~~p~~~~qTv~VppG~a~~ve~~f~~PG~y~~v~H~l~ea~~~G~~g~l~V~G  159 (173)
T d2bw4a2         106 RNPPDLDQETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTG  159 (173)
T ss_dssp             TSCCEEEESCCCBCTTEEEEEEEECCSCEEEEEEESSHHHHHTTSCEEEEEEES
T ss_pred             cCCCcCCceeEEccCCccEEEEEEecCceEEEEEechHHHHHhCCCEEEEEEcC
Confidence            456554  49999999999999999999999999996 5789999999999953

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=99.00  E-value=3.5e-10  Score=77.89  Aligned_cols=47  Identities=19%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccC
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRK   90 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~   90 (123)
                      ++..|.||++.+.+|.+++||.|+||||+..|.+.||.+.|.|.+++
T Consensus        79 ~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~~Gm~G~~iV~~~~  125 (129)
T d1aoza1          79 SQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQ  125 (129)
T ss_dssp             TBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGGGTCEEEEEEECCT
T ss_pred             ccceECCCCEEEEEEECCCCCceEEecCCHHHHhCCCEEEEEEcCCC
Confidence            34458999999999999999999999999999999999999997643

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=98.95  E-value=4.6e-10  Score=79.16  Aligned_cols=47  Identities=21%  Similarity=0.481  Sum_probs=41.1

Q ss_pred             eCCCCEEEEEEEecCCceEEEeecCc---cccccCceEEEEeeccCccCC
Q psy9698          48 NLPSGYTVVRVHFNNPGMWYFHCHFV---MHTDTGMTLVFQVGDRKQFVR   94 (123)
Q Consensus        48 v~pg~~~~irf~adnpG~Wl~HCHi~---~H~~~GM~~~~~V~~~~~~~~   94 (123)
                      |.||++.+++|.+++||.|+||||..   .|...||.+.+.|.+.+.+|+
T Consensus       101 i~PG~t~~y~f~a~~~Gt~~YH~H~~~~~~h~~~Gm~G~liV~p~~~~p~  150 (151)
T d1kbva1         101 TAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPK  150 (151)
T ss_dssp             BCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCCCC
T ss_pred             eCCCCEEEEEEeCCCCeEEEEECCCCChHHHHhCCCEEEEEEECCCCCCC
Confidence            67999999999999999999999954   499999999999976555554

>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=98.93  E-value=7e-10  Score=80.97  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=46.0

Q ss_pred             CCCCceee--eEEeCCCCEEEEEEEecCCceEEEeecC-ccccccCceEEEEee
Q psy9698          37 QPRPIVKD--TVGNLPSGYTVVRVHFNNPGMWYFHCHF-VMHTDTGMTLVFQVG   87 (123)
Q Consensus        37 ~~~p~~rD--Tv~v~pg~~~~irf~adnpG~Wl~HCHi-~~H~~~GM~~~~~V~   87 (123)
                      +.+++.+|  |+.|+||+..++.|+++.||.|+||||. ..|++.||++.|.|.
T Consensus       105 ~~n~p~~~~qT~~V~pG~~~~v~~tf~~PG~Y~fV~H~L~ea~~~Ga~g~l~V~  158 (177)
T d1oe1a2         105 FANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVE  158 (177)
T ss_dssp             TTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSHHHHHTTSCEEEEEEE
T ss_pred             eCCCCCcCceeEEecCCccEEEEEEecCceEEEEEecHHHHHHhcCCeEEEEec
Confidence            45777765  9999999999999999999999999997 468999999999995

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=98.81  E-value=1.3e-09  Score=76.10  Aligned_cols=47  Identities=15%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             ceeeeEEeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEee
Q psy9698          41 IVKDTVGNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ...++..+.||+..+++|. +++||.|.||||+..|...||.+.|.|+
T Consensus       106 ~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H~~~GM~G~iiVe  153 (153)
T d1e30a_         106 GTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGHAATGQFGKIVVK  153 (153)
T ss_dssp             EBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTTTTTTCEEEEEEC
T ss_pred             CccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhHHHCCCEEEEEEC
Confidence            3456677889999999997 5889999999999999999999999884

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=98.79  E-value=1.8e-09  Score=76.80  Aligned_cols=45  Identities=27%  Similarity=0.457  Sum_probs=40.0

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeec----CccccccCceEEEEeeccCc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCH----FVMHTDTGMTLVFQVGDRKQ   91 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCH----i~~H~~~GM~~~~~V~~~~~   91 (123)
                      .|.||++.+++|.+++||.|.||||    +..|...||.+.|.|.+.+.
T Consensus       106 ~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~~Gl~G~~iV~p~e~  154 (157)
T d2bw4a1         106 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDG  154 (157)
T ss_dssp             CBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBC
T ss_pred             eECcCCEEeEEEECCCCccceEEECCCCchHHHHhCCCEEEEEEeCCCC
Confidence            4889999999999999999999999    56789999999999975443

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.78  E-value=3.2e-09  Score=73.03  Aligned_cols=48  Identities=21%  Similarity=0.204  Sum_probs=45.1

Q ss_pred             CceeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          40 PIVKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        40 p~~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      -...+|..+.|++..+|.|++..||.|.||||+..|...||.+.|.|.
T Consensus        91 ~v~~~t~~~~pg~s~~i~f~~~~~G~y~f~Ct~pgH~~~GM~G~i~V~  138 (139)
T d1qhqa_          91 NALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT  138 (139)
T ss_dssp             TEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred             cccccccccCCcceEEEEEecCCCeEEEEEcCCcCcccccCeEEEEEc
Confidence            357889999999999999999999999999999999999999999985

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=98.72  E-value=9.5e-09  Score=73.17  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEeeccCc
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGDRKQ   91 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~~~   91 (123)
                      ..+++|++...+|.++.+|.|.||||+..|...||.+.|.|.++..
T Consensus       115 ~i~~pg~~~~y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~~iV~~p~~  160 (162)
T d2q9oa1         115 PIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPAS  160 (162)
T ss_dssp             CBCTTTEEEEEEEECCSCEEEEEEECSTTGGGGTCEEEEEEECCCS
T ss_pred             eecCCCCEEEeeecCCCCEEEEeecCCHHHHhCCCEEEEEECCCCC
Confidence            3467899999999999999999999999999999999999986543

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.72  E-value=4e-09  Score=74.54  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecC-----ccccccCceEEEEeec
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHF-----VMHTDTGMTLVFQVGD   88 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi-----~~H~~~GM~~~~~V~~   88 (123)
                      .|.||++.+++|.+++||.|+||||.     ..|...||.+.+.|.+
T Consensus       104 ~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~~~Gm~G~~iV~P  150 (153)
T d1mzya1         104 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLP  150 (153)
T ss_dssp             CBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHTTCEEEEEEEC
T ss_pred             cccCCCEEEEEEEcCCCceEEEEeCCcccccHhHHhCCCEEEEEEec
Confidence            58899999999999999999999995     3588999999999964

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=98.66  E-value=9.8e-09  Score=73.01  Aligned_cols=45  Identities=22%  Similarity=0.363  Sum_probs=39.6

Q ss_pred             EeCCCCEEEEEEEecCCceEEEeecC----ccccccCceEEEEeeccCc
Q psy9698          47 GNLPSGYTVVRVHFNNPGMWYFHCHF----VMHTDTGMTLVFQVGDRKQ   91 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG~Wl~HCHi----~~H~~~GM~~~~~V~~~~~   91 (123)
                      .|.||++.+++|.++.||.|.||||.    ..|...||.+.|.|.+.+.
T Consensus       107 ~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~~Gl~G~liV~p~e~  155 (159)
T d1oe2a1         107 NVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDG  155 (159)
T ss_dssp             CBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTC
T ss_pred             cCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHhCCCEEEEEEECCCC
Confidence            47899999999999999999999994    5688999999999975443

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=98.30  E-value=5.7e-07  Score=61.72  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=39.7

Q ss_pred             EEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ..|.||++.+.+|.+ +.+|.|.||||...|...||.+.+.|.++
T Consensus        85 ~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~p  129 (130)
T d1gyca1          85 CPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP  129 (130)
T ss_dssp             CCBCTTEEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             CCCCCCCeEEEEEECCCCCceeEEecCCHHHHhCCCEEEEEEeCC
Confidence            358999999999997 57999999999999999999999999753

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=98.29  E-value=4.8e-07  Score=62.30  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             EEeCCCCEEEEEEE-ecCCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVH-FNNPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~-adnpG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ..|.||+..+.+|. ++.+|.|.||||...|...||.+.+.|.++
T Consensus        85 ~~I~PG~~~~y~~~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~  129 (131)
T d1hfua1          85 CPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDD  129 (131)
T ss_dssp             CCBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             ceECCCCeEEEEEeCCCCcceEEEecCCHHHHhCCCEEEEEEcCC
Confidence            36889999999998 578999999999999999999999999754

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.20  E-value=1.3e-06  Score=58.05  Aligned_cols=44  Identities=7%  Similarity=0.062  Sum_probs=37.6

Q ss_pred             eeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .-+..+.||+..+++|.++.||.|.||||...| ..||.+.|.|.
T Consensus        68 ~~~~~~~pG~t~~~~f~~~~~G~y~y~C~~~~~-~~~M~G~i~V~  111 (112)
T d1ibya_          68 GVQEVIKAGETKTISFTADKAGAFTIWCQLHPK-NIHLPGTLNVV  111 (112)
T ss_dssp             TEEEEECTTCEEEEEEECCSCEEEEEBCSSSCT-TTBCCEEEEEE
T ss_pred             ccccccCCcceEEEEEEeccceEEEEECcccCh-hhcCeEEEEEE
Confidence            345577899999999999999999999998555 47899999885

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.03  E-value=5.8e-06  Score=56.63  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=38.3

Q ss_pred             eEEeCCCCEEEEEEEecCCceEEEeecCccccc-cCceEEEEeec
Q psy9698          45 TVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTD-TGMTLVFQVGD   88 (123)
Q Consensus        45 Tv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~-~GM~~~~~V~~   88 (123)
                      ...+.||...++.|.+++||.|.||||...|.. .||.+.+.|.+
T Consensus        87 ~~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~M~G~iiVeP  131 (132)
T d1fwxa1          87 AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEMRGRMLVEP  131 (132)
T ss_dssp             EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTCEEEEEEEC
T ss_pred             ccccCCCEEEEEEEeCCCCeEEEEECccccCcchhcCEEEEEEEc
Confidence            346678999999999999999999999877764 79999999963

>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=97.94  E-value=8.1e-06  Score=56.28  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=39.5

Q ss_pred             EEeCCCCEEEEEEEec-CCceEEEeecCccccccCceEEEEeecc
Q psy9698          46 VGNLPSGYTVVRVHFN-NPGMWYFHCHFVMHTDTGMTLVFQVGDR   89 (123)
Q Consensus        46 v~v~pg~~~~irf~ad-npG~Wl~HCHi~~H~~~GM~~~~~V~~~   89 (123)
                      ..|.||+..+.+|.+. .+|.+.||||...|...||.+.+.|.++
T Consensus        85 ~~I~PG~~~~Y~~~~~~~~Gt~wYH~H~~~q~~~GL~G~liV~~~  129 (136)
T d1v10a1          85 CPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDP  129 (136)
T ss_dssp             CCBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECT
T ss_pred             ceECCCCeEEEEEECCCCccceEEecCchhHHhCCCEEEEEECCC
Confidence            3588999999999984 6999999999999999999999999753

>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6e-06  Score=57.12  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=37.2

Q ss_pred             EeCCCCEEEEEEEecCC-ceEEEeecCc----cccccCceEEEEeecc
Q psy9698          47 GNLPSGYTVVRVHFNNP-GMWYFHCHFV----MHTDTGMTLVFQVGDR   89 (123)
Q Consensus        47 ~v~pg~~~~irf~adnp-G~Wl~HCHi~----~H~~~GM~~~~~V~~~   89 (123)
                      .|.||+..+.+|.+++| |.+.||||..    .|...||.+.+.|.+.
T Consensus        88 ~i~pg~~~~y~~~~~~~aGt~wyH~H~~~~~~~~~~~Gl~G~liV~~~  135 (140)
T d1kv7a1          88 IIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDD  135 (140)
T ss_dssp             CBCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECH
T ss_pred             eEccCCceeEEEEEecCCeeEEEEECCCCChHHHHhCCCeEEEEECCc
Confidence            47899999999999885 9999999963    5788999999999753

>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.7e-05  Score=57.28  Aligned_cols=51  Identities=8%  Similarity=0.071  Sum_probs=40.8

Q ss_pred             eeeeEEeCCCCEEEEEEEecC----------CceEEEeecCcc--ccccCceEEEEeeccCcc
Q psy9698          42 VKDTVGNLPSGYTVVRVHFNN----------PGMWYFHCHFVM--HTDTGMTLVFQVGDRKQF   92 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~adn----------pG~Wl~HCHi~~--H~~~GM~~~~~V~~~~~~   92 (123)
                      ...+..|+||+..+.+|.+..          +|.|+||||+..  |...||.+.|.|.+.+.+
T Consensus       124 ~~~~~~v~PG~t~tY~~~~~~~~~p~~~d~~~gt~~YHsHv~~~~~~~~GL~G~lIV~~~g~l  186 (192)
T d2j5wa1         124 QRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSL  186 (192)
T ss_dssp             GTGGGCBCTTCEEEEEEECCSTTSCCTTSCSEEEEEEECCSSHHHHHHHTCEEEEEEECTTCB
T ss_pred             CcccCcccCCCEEEEEEEccCccccccCCCCCceEEEeCCCCcHHHHhCCCeEEEEEccCCCC
Confidence            344557899999999999854          579999999854  889999999999754433

>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.58  E-value=3.5e-05  Score=47.28  Aligned_cols=43  Identities=9%  Similarity=0.109  Sum_probs=36.5

Q ss_pred             eCCCCEEEEEEEecCCc----------eEEEeecCcc--ccccCceEEEEeeccC
Q psy9698          48 NLPSGYTVVRVHFNNPG----------MWYFHCHFVM--HTDTGMTLVFQVGDRK   90 (123)
Q Consensus        48 v~pg~~~~irf~adnpG----------~Wl~HCHi~~--H~~~GM~~~~~V~~~~   90 (123)
                      |.||++.+-+|.+...+          .|.||||+..  +...||.+.|.|-.+.
T Consensus         3 V~PG~t~tY~w~v~~~~gp~~~d~~c~t~~YHsHv~~~~q~~~GL~G~liV~~~g   57 (67)
T d1sddb1           3 IQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKG   57 (67)
T ss_dssp             BCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCSSHHHHHTTTCEEEEEEECTT
T ss_pred             CCCCCeEEEEEEcCCcCCCccCCCCceeEEEEcccchHHHhhCCceEEEEEcCCC
Confidence            78999999999987655          8999999965  7889999999996543

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.54  E-value=8.7e-05  Score=50.55  Aligned_cols=42  Identities=19%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccc-cCceEEEEee
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTD-TGMTLVFQVG   87 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~-~GM~~~~~V~   87 (123)
                      ..+.||...++.|.+++||.|.+||+...|.. .+|.+.+.|.
T Consensus        87 ~~~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~M~g~i~Ve  129 (131)
T d1qnia1          87 MEISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEMVGRMLVE  129 (131)
T ss_dssp             EEECTTCEEEEEEECCSSEEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred             cccCCCceEEEEEEcCCCEEEEEECccccCcchhcCeeEEEEE
Confidence            35779999999999999999999999877763 7999999986

>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.28  E-value=0.00016  Score=51.67  Aligned_cols=45  Identities=4%  Similarity=-0.021  Sum_probs=37.3

Q ss_pred             EeCCCCEEEEEEEecC----------CceEEEeecCcc--ccccCceEEEEeeccCc
Q psy9698          47 GNLPSGYTVVRVHFNN----------PGMWYFHCHFVM--HTDTGMTLVFQVGDRKQ   91 (123)
Q Consensus        47 ~v~pg~~~~irf~adn----------pG~Wl~HCHi~~--H~~~GM~~~~~V~~~~~   91 (123)
                      .|+||++.+.+|.+..          .|.|+||||+..  |...||.+.|.|-++..
T Consensus       113 ~V~PGet~tY~w~v~~~~gp~~~d~~~gt~~YHshv~~~~~~~~GL~G~lIV~~~g~  169 (180)
T d1sdda1         113 AVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGT  169 (180)
T ss_dssp             CBCTTCEEEEEEECCGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEEeCCcccCccCCCCCEEEEEecCCCcHHHhhCCceEEEEEccCCC
Confidence            4899999999999853          389999999755  77899999999975433

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=97.08  E-value=0.00048  Score=43.87  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=37.1

Q ss_pred             eeeEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .++..+.|++...+.|.+ +.||.|.|+|..  |...||.+.+.|.
T Consensus        61 ~~~~~~~~g~~~~~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~Ve  104 (105)
T d2q5ba1          61 HSQLMFSPGESYEITFSSDFPAGTYTYYCAP--HRGAGMVGKITVE  104 (105)
T ss_dssp             EEEEECSTTCEEEEEECTTSCSEEEEEECST--TGGGTCEEEEEEC
T ss_pred             cccccccCCceEEEEEEeccCCceEEEEeCC--CCCCCCEEEEEEc
Confidence            567778899999999985 579999999974  9999999999984

>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00089  Score=48.67  Aligned_cols=46  Identities=7%  Similarity=-0.044  Sum_probs=36.4

Q ss_pred             EeCCCCEEEEEEEecCCc----------eEEEeecCcc--ccccCceEEEEeeccCcc
Q psy9698          47 GNLPSGYTVVRVHFNNPG----------MWYFHCHFVM--HTDTGMTLVFQVGDRKQF   92 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG----------~Wl~HCHi~~--H~~~GM~~~~~V~~~~~~   92 (123)
                      .|.||++.+.+|.+...+          .|+||||+..  |...||.+.|.|-....+
T Consensus       143 ~V~PGet~tY~w~v~~~~gP~~~d~~c~T~~YHshv~~~~d~~~GL~G~lIV~~~g~l  200 (207)
T d2j5wa3         143 HVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSL  200 (207)
T ss_dssp             CBCTTCEEEEEEECCGGGSCCSSSCSEEEEEEECBSSHHHHHHHTCEEEEEEECTTCB
T ss_pred             eecCCCEEEEEEEecCCCCCccCCCCceeEEEccCCChhHhhccCceEEEEEccCCCC
Confidence            488999999999986433          7999999854  557899999999654333

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=96.71  E-value=0.0007  Score=45.09  Aligned_cols=32  Identities=34%  Similarity=0.603  Sum_probs=28.4

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.+.++.||.|.|+|..  |...||.+.+.|++
T Consensus        63 ~~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vgd   94 (123)
T d1pmya_          63 EAVVKFDKEGVYGFKCAP--HYMMGMVALVVVGD   94 (123)
T ss_dssp             CEEEECCSCEEEEEECST--TTTTTCEEEEEESS
T ss_pred             ccccccCCCceEEEEecc--CCCCCCEEEEEECC
Confidence            456778999999999965  99999999999985

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=96.66  E-value=0.0016  Score=41.30  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             EEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          46 VGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        46 v~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+.+|....  +.++.||.+.|+|..  |...||.+.+.|.
T Consensus        61 ~~~~~g~t~~--~tf~~~G~y~Y~C~~--H~~~gM~G~I~Ve   98 (98)
T d1pcsa_          61 LLFAAGESFT--STFTEPGTYTYYCEP--HRGAGMVGKVVVE   98 (98)
T ss_dssp             EECSTTCEEE--EECCSCEEEEEECGG--GTTTTCEEEEEEC
T ss_pred             cccCCCcEEE--EeccCCceEEEEecc--CCCCCCEEEEEEC
Confidence            3455666544  455899999999964  9999999999883

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.49  E-value=0.0013  Score=41.24  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ++.+.++.||.+.|+|..  |...||.+.+.|+
T Consensus        68 t~~~tf~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d2plta_          68 TYSVKLTAAGEYGYYCEP--HQGAGMVGKIIVQ   98 (98)
T ss_dssp             EEEEECCSCEEEEEECGG--GGGGTCEEEEEEC
T ss_pred             eEEEEecCCceEEEEeCc--CCCCCCEEEEEEC
Confidence            466777999999999974  9999999999884

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=96.35  E-value=0.0019  Score=42.96  Aligned_cols=32  Identities=28%  Similarity=0.551  Sum_probs=27.8

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.+.++.||.|.|+|..  |...||.+.+.|++
T Consensus        63 ~~s~tF~~~G~y~Y~Ctp--H~~~GM~G~I~Vg~   94 (120)
T d1paza_          63 NYVLTVTQPGAYLVKCTP--HYAMGMIALIAVGD   94 (120)
T ss_dssp             CEEEECCSCEEEEEECTT--TGGGTCEEEEEESS
T ss_pred             eEEEEecCCCeEEEEEee--CCCCCCEEEEEECC
Confidence            356677899999999964  99999999999985

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=96.34  E-value=0.0038  Score=39.20  Aligned_cols=42  Identities=21%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             eeeeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          42 VKDTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        42 ~rDTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .-+...+.+|....  +.++.||.+.|+|..  |...||.+.+.|.
T Consensus        50 ~~~~~~~~~g~~~~--~tF~~~G~y~Y~C~~--H~~~gM~G~I~Ve   91 (91)
T d1bxua_          50 SHKDLAFSPGETFE--ATFSEPGTYTYYCEP--HRGAGMVGKIVVQ   91 (91)
T ss_dssp             CEEEEECSTTCEEE--EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             cccccccCCCCCEE--EEeccCceEEEEeCC--CCCCCCEEEEEEC
Confidence            34666777787654  566899999999965  9999999999873

>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.33  E-value=0.00099  Score=46.97  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             CCCCEEEEEEEecCC-ceEEEeecCc----cccccCceEEEEeecc
Q psy9698          49 LPSGYTVVRVHFNNP-GMWYFHCHFV----MHTDTGMTLVFQVGDR   89 (123)
Q Consensus        49 ~pg~~~~irf~adnp-G~Wl~HCHi~----~H~~~GM~~~~~V~~~   89 (123)
                      +++.+.+.+|.++.+ |.+.||||..    .|...||.+.+.|.++
T Consensus       131 ~~~~~~~y~~~~~~~~Gt~WYH~H~~g~t~~qv~~GL~G~~iV~d~  176 (181)
T d1gska1         131 PYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDP  176 (181)
T ss_dssp             TTCCCSEEEECCCSCSEEEEEEECCTTTHHHHHHHTCEEEEEEECG
T ss_pred             CCCcceeEEeecCCCCEEEEeCCCCCCCcHHHHhcCCEEEEEECCc
Confidence            446777889999875 8888999974    4778999999999754

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=96.28  E-value=0.0018  Score=40.85  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             EEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          54 TVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        54 ~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ..+.+.++.||.+.|+|..  |...||.+.|.|+
T Consensus        71 ~~~~~~f~~~G~y~Y~C~~--H~~~GM~G~I~Ve  102 (102)
T d1kdja_          71 PSFKAKVSTPGTYTFYCTP--HKSANMKGTLTVK  102 (102)
T ss_dssp             CEEEECCCSCEEEEEECST--TGGGTCEEEEEEC
T ss_pred             cEEEEeeCCCceEEEEecC--CcccCCeEEEEEC
Confidence            3556667899999999974  9999999999883

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.06  E-value=0.005  Score=41.30  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             ceeeeEEeCCCCEEEEEEEe---cCCceEEEeecCccccccCceEEEEee
Q psy9698          41 IVKDTVGNLPSGYTVVRVHF---NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~a---dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ....|..|.||+...|.|.+   +.||.+.|=|-+--|. .||.+.+.|.
T Consensus        80 vi~~t~~l~pGes~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~gM~G~l~Ve  128 (128)
T d1jzga_          80 VIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHS-ALMKGTLTLK  128 (128)
T ss_dssp             CCEECCCBCTTCEEEEEEEGGGCCTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             hhhcccccCCCceEEEEEEeeccCCCceEEEEECCCCcc-cccEEEEEEC
Confidence            45778899999999999997   4799999999999999 8999999873

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=95.99  E-value=0.0074  Score=40.07  Aligned_cols=42  Identities=29%  Similarity=0.407  Sum_probs=35.1

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecC---ccccccCceEEEEee
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHF---VMHTDTGMTLVFQVG   87 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi---~~H~~~GM~~~~~V~   87 (123)
                      -.+.+.||....+.|.+++||.+.+.|+.   ..|  .+|.+.+.|.
T Consensus        77 v~~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H--~~M~g~i~V~  121 (122)
T d2cuaa_          77 INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFGTIVVK  121 (122)
T ss_dssp             CEEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEEEEEEE
T ss_pred             eeEEEecCceEEEEEEeccceeEEEEehhccCCCc--ccCeEEEEEE
Confidence            34566789999999999999999999997   456  4799988875

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=95.90  E-value=0.0054  Score=41.04  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             ceeeeEEeCCCCEEEEEEEe---cCCceEEEeecCccccccCceEEEEee
Q psy9698          41 IVKDTVGNLPSGYTVVRVHF---NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~a---dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ....|..|.||+...|.|++   +.||.+.|-|-+--|. .||.+.+.|.
T Consensus        80 via~t~~l~pget~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~gM~G~l~V~  128 (129)
T d2ccwa1          80 VIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHW-AMMKGTLKLG  128 (129)
T ss_dssp             EEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGG-GTSEEEEEEC
T ss_pred             ccccccccCCCceEEEEEEecccCCCccEEEEeCCCChh-hCcEEEEEEc
Confidence            45668889999999999999   4799999999999996 8999999985

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=95.90  E-value=0.0057  Score=40.96  Aligned_cols=46  Identities=13%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             ceeeeEEeCCCCEEEEEEEe---cCCceEEEeecCccccccCceEEEEee
Q psy9698          41 IVKDTVGNLPSGYTVVRVHF---NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        41 ~~rDTv~v~pg~~~~irf~a---dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      ....|..|.||+...+.|.+   ..||.+.|=|-+--|. .||.+.+.|.
T Consensus        80 via~t~~l~pGe~~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~gM~G~l~V~  128 (129)
T d1cuoa_          80 VIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHF-SMMRGTLKLE  128 (129)
T ss_dssp             CSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCT-TTSEEEEEEE
T ss_pred             hhhhccccCccccceEEEEccccCCCceEEEEeCCCCcc-cCcEEEEEEe
Confidence            45678899999999999997   4699999999999997 8999999986

>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0039  Score=44.38  Aligned_cols=41  Identities=12%  Similarity=0.105  Sum_probs=34.3

Q ss_pred             EeCCCCEEEEEEEecCCc----------eEEEeecCcc--ccccCceEEEEee
Q psy9698          47 GNLPSGYTVVRVHFNNPG----------MWYFHCHFVM--HTDTGMTLVFQVG   87 (123)
Q Consensus        47 ~v~pg~~~~irf~adnpG----------~Wl~HCHi~~--H~~~GM~~~~~V~   87 (123)
                      .|.||+..+.+|.+...+          .|+||||+..  |...||.+.+.|-
T Consensus       124 ~v~PGet~tY~w~v~~~~gp~~~d~~c~t~~YHShv~~~~d~~sGL~GplIVc  176 (179)
T d2j5wa4         124 PTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVC  176 (179)
T ss_dssp             CBCTTCEEEEEEECCGGGSCCTTSCSEEEEEEECCTTHHHHHHTTCEEEEEEE
T ss_pred             cccCCccEEEEEEecCccCCccCCCCceeEEEecCCCcHHHhhCCCeEEEEEE
Confidence            478999999999985433          8999999954  7789999999985

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=95.84  E-value=0.0079  Score=40.25  Aligned_cols=48  Identities=15%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             CCceeeeEEeCCCCEEEEEEEe---cCCceEEEeecCccccccCceEEEEee
Q psy9698          39 RPIVKDTVGNLPSGYTVVRVHF---NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        39 ~p~~rDTv~v~pg~~~~irf~a---dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .+....|..|.||+..+|.|.+   +.||.+.|=|-+--|. .||.+.+.|.
T Consensus        78 ~~vla~t~~l~pGes~~i~f~~p~~~~~G~Y~f~Ct~PGH~-~~M~G~l~V~  128 (128)
T d1nwpa_          78 ARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHI-SMMKGTVTLK  128 (128)
T ss_dssp             TTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCG-GGSEEEEEEC
T ss_pred             hhheeecccccCCCceEEEEEecccCCCceEEEEECCCCcc-cCceEEEEEC
Confidence            3466789999999999999998   4799999999999998 8999999873

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=95.81  E-value=0.0067  Score=38.17  Aligned_cols=43  Identities=21%  Similarity=0.252  Sum_probs=35.8

Q ss_pred             eeeEEeCCCCEEEEEEEe-cCCceEEEeecCccccccCceEEEEee
Q psy9698          43 KDTVGNLPSGYTVVRVHF-NNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        43 rDTv~v~pg~~~~irf~a-dnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .+.....|+....+.|.+ +.||.+.|+|-.  |...||.+.+.|.
T Consensus        61 ~~~~~~~~~~~~~~~f~~~~~~G~y~y~C~~--H~~~GM~G~I~V~  104 (105)
T d2cj3a1          61 HKQLLMSPGQSTSTTFPADAPAGEYTFYCEP--HRGAGMVGKITVA  104 (105)
T ss_dssp             EEEEECSTTCEEEEECCTTCCSEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             ccccccCCCcceEEEEEeccCCceEEEEeCC--CcCCCcEEEEEEe
Confidence            356666788888888875 679999999964  9999999999884

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=95.81  E-value=0.0057  Score=40.27  Aligned_cols=31  Identities=32%  Similarity=0.603  Sum_probs=27.1

Q ss_pred             EEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          56 VRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        56 irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      +.+.++.+|.|.|+|-.  |...||.+.+.|++
T Consensus        64 ~~~tF~~~G~Y~Y~C~p--H~~~GM~G~I~Vg~   94 (123)
T d1adwa_          64 YTLTVTEPGLYGVKCTP--HFGMGMVGLVQVGD   94 (123)
T ss_dssp             EEEEECSCEEEEEECGG--GGGGTCEEEEEESS
T ss_pred             eEEeccCCCeEEEEEcc--CCCCCCEEEEEECC
Confidence            45666899999999965  99999999999975

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=95.76  E-value=0.0044  Score=38.76  Aligned_cols=35  Identities=26%  Similarity=0.456  Sum_probs=28.8

Q ss_pred             CCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          51 SGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        51 g~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +....+.+.++.||.+.|+|-  .|...||.+.+.|.
T Consensus        63 ~~~~~~~~tf~~~G~y~Y~C~--~H~~~GM~G~I~Ve   97 (97)
T d2jxma1          63 APGSFYSVTLGTPGTYSFYCT--PHRGAGMVGTITVE   97 (97)
T ss_dssp             SCSCCEEEECCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred             CcceEEEEecCCCeEEEEEEc--cCCCCCCEEEEEEC
Confidence            334467778899999999995  49999999999883

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=95.51  E-value=0.0075  Score=40.15  Aligned_cols=32  Identities=41%  Similarity=0.689  Sum_probs=27.6

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEeec
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVGD   88 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~~   88 (123)
                      .+.+.++.||.+.|+|.  .|...||.+.+.|++
T Consensus        63 ~~s~Tf~~~G~Y~Y~C~--pH~~~GM~G~IvVgd   94 (124)
T d1bqka_          63 NYKVTFTAPGVYGVKCT--PHYGMGMVGVVQVGD   94 (124)
T ss_dssp             CEEEECCSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred             cEEEecCCCceEEEEec--cCcCCCCEEEEEECC
Confidence            45567789999999996  599999999999984

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=95.50  E-value=0.0071  Score=37.80  Aligned_cols=30  Identities=27%  Similarity=0.423  Sum_probs=25.8

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      .+.+.++.||.+.|+|-.  |...||.+.+.|
T Consensus        69 ~~~~tf~~~G~y~y~C~~--H~~~GM~G~I~V   98 (99)
T d1bypa_          69 EYSVTLTEKGTYKFYCAP--HAGAGMVGKVTV   98 (99)
T ss_dssp             EEEEEECSCEEEEEECGG--GTTTTCEEEEEE
T ss_pred             eEEEEecCCceEEEEECc--CCCCCCEEEEEE
Confidence            456667899999999964  999999999987

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=95.41  E-value=0.01  Score=36.97  Aligned_cols=31  Identities=26%  Similarity=0.536  Sum_probs=26.4

Q ss_pred             EEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          55 VVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        55 ~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      .+.+.++.||.+.|+|-.  |...||.+.+.|+
T Consensus        68 ~~~~~f~~~G~y~y~C~~--H~~~GM~G~I~Ve   98 (98)
T d1iuza_          68 TVVRKLSTPGVYGVYCEP--HAGAGMKMTITVQ   98 (98)
T ss_dssp             EEEEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred             EEEEecCCCceEEEEeCC--CccCCCeEEEEEC
Confidence            456677899999999964  9999999999884

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=95.08  E-value=0.014  Score=36.79  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=28.0

Q ss_pred             eCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEe
Q psy9698          48 NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQV   86 (123)
Q Consensus        48 v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V   86 (123)
                      ..||.+..+  .++.||.+.|+|-  .|...||.+.+.|
T Consensus        64 ~~~g~t~~~--tF~~~G~y~Y~C~--pH~~~GM~G~I~V   98 (99)
T d1plca_          64 NAKGETFEV--ALSNKGEYSFYCS--PHQGAGMVGKVTV   98 (99)
T ss_dssp             CSTTCEEEE--ECCSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred             cCCCceEEE--ecCCCceEEEEeC--CCcCCCcEEEEEE
Confidence            346665554  4579999999994  6999999999987

>d1mzya2 b.6.1.3 (A:194-371) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.87  E-value=0.064  Score=37.92  Aligned_cols=51  Identities=16%  Similarity=0.109  Sum_probs=44.3

Q ss_pred             CCCCcee--eeEEeCCCCEEEEEEEecCCceEEEeecCcc-ccccCceEEEEee
Q psy9698          37 QPRPIVK--DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVM-HTDTGMTLVFQVG   87 (123)
Q Consensus        37 ~~~p~~r--DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~-H~~~GM~~~~~V~   87 (123)
                      +.|++.+  -|+.|++|+-..+.+....||.+.|-.|.+. .+..|..+.|.|.
T Consensus       109 ~~n~p~~~~qT~~v~~G~a~~~~~tf~~PG~Y~~VdH~l~~A~~kGA~g~l~V~  162 (178)
T d1mzya2         109 FHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVE  162 (178)
T ss_dssp             TTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESSHHHHHTTCCEEEEEEE
T ss_pred             cCCCCCCCceEEEecCCceeEEEEEeCCCeEEEEEccHHHHHHhCCCeEEEEeC
Confidence            4566554  5889999999999999999999999999975 4799999999995

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.73  E-value=0.048  Score=34.54  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             eeEEeCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          44 DTVGNLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        44 DTv~v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +.-.+.+++.  +++.++.||.+.|+|-+  |  .||.+.+.|.
T Consensus        68 ~~~~~~~g~~--~~~tf~~pG~y~y~C~~--H--~~M~G~I~Ve  105 (105)
T d2ov0a1          68 KGPMMKKEQA--YSLTFTEAGTYDYHCTP--H--PFMRGKVVVE  105 (105)
T ss_dssp             ECCCBCTTEE--EEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             cccccCCCce--EEEEecCCeEEEEEecC--C--CCCEEEEEEC
Confidence            3334455655  45566899999999976  6  6999999873

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=90.32  E-value=0.21  Score=31.28  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             eCCCCEEEEEEEecCCceEEEeecCccccccCceEEEEee
Q psy9698          48 NLPSGYTVVRVHFNNPGMWYFHCHFVMHTDTGMTLVFQVG   87 (123)
Q Consensus        48 v~pg~~~~irf~adnpG~Wl~HCHi~~H~~~GM~~~~~V~   87 (123)
                      +.++.  ...+.++.||.+.|+|-+  |  .||.+.+.|.
T Consensus        73 ~~~~~--~~~~tf~~~G~y~y~C~~--H--~~M~G~I~Ve  106 (106)
T d1id2a_          73 MTKDQ--AYAITFNEAGSYDYFCTP--H--PFMRGKVIVE  106 (106)
T ss_dssp             BCTTE--EEEEEECSCEEEEEECSS--C--TTCEEEEEEC
T ss_pred             cCCCc--eEEEecCCCeEEEEEccC--C--CCCEEEEEEC
Confidence            33444  355677899999999976  6  5999999873