Psyllid ID: psy9711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
YSNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHccccEEEEEccccHHHHHHHHHHcccccEEEEccHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccEEcccHHHHHHHHccccEEEEEccccHHHHHHHHHHccccEEEEEcccHHHHHHHHccccEEEEEEHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
ysnsfkstEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFisvadnspipviiynntfvtnidISVDTLVKLAhhenirgvkdtdniKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL
Flexible Loop (DISEMBL)
ysnsfksteeeKLKIISTlrqetkktiiagtycesTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHenirgvkdtdnIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLqhrlvkpdvtl
Low Complexity Region (SEG)
YSNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQkaakaganaaLILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFagsagyllsgllvgCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL
Disordered region (IsUnstruct)
**************IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKL***********
Disordered Region (DISOPRED)
YSNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV**
Disordered Region (DISEMBL)
***********KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL
Disordered Region (DISPRO)
****FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YSNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q5XGL6	326	Probable 4-hydroxy-2-oxog	N/A	N/A	0.949	0.576	0.437	1e-44
Q5M8W9	328	Probable 4-hydroxy-2-oxog	yes	N/A	0.949	0.573	0.437	3e-44
Q0P5I5	327	Probable 4-hydroxy-2-oxog	yes	N/A	0.949	0.574	0.406	5e-42
Q86XE5	327	Probable 4-hydroxy-2-oxog	yes	N/A	0.964	0.584	0.4	6e-42
Q6NY77	324	Probable 4-hydroxy-2-oxog	yes	N/A	0.964	0.589	0.384	3e-40
Q9DCU9	321	Probable 4-hydroxy-2-oxog	yes	N/A	0.949	0.585	0.406	7e-40
P0CL20	314	Putative 4-hydroxy-2-oxog	N/A	N/A	0.954	0.601	0.369	9e-25
Q8EQJ1	295	4-hydroxy-tetrahydrodipic	yes	N/A	0.919	0.616	0.322	2e-23
B9DS79	309	4-hydroxy-tetrahydrodipic	yes	N/A	0.924	0.592	0.329	3e-22
B1I383	294	4-hydroxy-tetrahydrodipic	yes	N/A	0.919	0.619	0.326	9e-20

>sp|Q5XGL6|HOGA1_XENLA Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Xenopus laevis GN=hoga1 PE=2 SV=1

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 133/192 (69%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+L+++  +RQ    +K I+AG+ CEST+ATI++T + A++GA+  L++ P Y++ K
Sbjct: 82  TREERLEVVRRVRQAVPKEKLIMAGSGCESTQATIEMTVEMARSGADVVLVVTPSYYRGK 141

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           MT   +  H+  VAD+SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 142 MTSSALVHHYTKVADHSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIIGLKDSGGDITR 201

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++TK L F V +GSAG+LL+G  VG  GG+ AL+ VLG  +CEL  L   G+W+E
Sbjct: 202 IGLIIHKTKHLGFQVLSGSAGFLLAGYSVGAVGGVCALANVLGAQVCELEKLCLNGRWQE 261

Query: 184 AMKLQHRLVKPD 195
           A +LQHRL++P+
Sbjct: 262 AKELQHRLIEPN 273

Catalyzes the final step in the metabolic pathway of hydroxyproline.
Xenopus laevis (taxid: 8355)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q5M8W9|HOGA1_XENTR Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Xenopus tropicalis GN=hoga1 PE=2 SV=2

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+L+++  +RQ    +K I+AG+ CEST+ATI++T + A++GA+A L++ P Y++ K
Sbjct: 84  TREERLEVVRRVRQAVPKEKLIMAGSGCESTQATIEMTVEMAQSGADAVLVVTPSYYRGK 143

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           MT   +  H+  VAD+SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 144 MTSSALVHHYTKVADHSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIIGLKDSGGDITR 203

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++TK L F V +GSAG+LL+G  VG  GG+ AL+ VLG  +CEL  L   G+W+E
Sbjct: 204 IGLIIHKTKHLGFQVLSGSAGFLLAGYSVGAVGGVCALANVLGAQVCELERLCLNGRWQE 263

Query: 184 AMKLQHRLVKPD 195
           A +LQ+RL++P+
Sbjct: 264 AKELQYRLIEPN 275

Catalyzes the final step in the metabolic pathway of hydroxyproline.

Xenopus tropicalis (taxid: 8364)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q0P5I5|HOGA1_BOVIN Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Bos taurus GN=HOGA1 PE=1 SV=1

 Score =  170 bits (431), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 129/192 (67%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S  RQ     K ++AG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 85  TSSERLEVVSRARQALPKDKLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 144

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 145 MSSAALIHHYTKVADLSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGIKDSGGDVTR 204

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T+  +F V AGSAG+LL+   +G  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 205 IGLIVHKTRSQDFQVLAGSAGFLLASYAIGAVGGVCALANVLGSQVCQLERLCLTGQWED 264

Query: 184 AMKLQHRLVKPD 195
           A KLQHRL++P+
Sbjct: 265 AQKLQHRLIEPN 276

Catalyzes the final step in the metabolic pathway of hydroxyproline.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q86XE5|HOGA1_HUMAN Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Homo sapiens GN=HOGA1 PE=1 SV=1

 Score =  170 bits (430), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 131/195 (67%), Gaps = 4/195 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 85  TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 144

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 145 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTR 204

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T+  +F V AGSAG+L++   +G  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 205 IGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWED 264

Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P+  +
Sbjct: 265 AQKLQHRLIEPNAAV 279

Catalyzes the final step in the metabolic pathway of hydroxyproline.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q6NY77|HOGA1_DANRE Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Danio rerio GN=zgc:77082 PE=2 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 130/195 (66%), Gaps = 4/195 (2%)

Query: 8   TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+++++  ++Q     K ++AG+ CESTRATI ++Q+ A AGA+  L++ P +++ +
Sbjct: 82  TAEERVEVVKRVKQALPKDKLVMAGSGCESTRATIQMSQRMADAGADCVLVVTPCFYRGR 141

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M    +  H+  VAD+  +PV++Y+    T +D+ VD +++L+ H NI G+KD+  D  +
Sbjct: 142 MDSRALINHYSKVADSCSVPVVLYSVPANTGLDLPVDAVIQLSKHPNIVGLKDSGGDITR 201

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +A M  +T+  +F V AGSAG+L++   VG  GG+ AL+ VLG  +CEL  L  +G+W+E
Sbjct: 202 IALMVQKTRSQDFQVLAGSAGFLMAAYAVGAVGGVCALANVLGQQVCELAQLCVSGRWDE 261

Query: 184 AMKLQHRLVKPDVTL 198
           A +LQ+RL++P+  +
Sbjct: 262 AKELQYRLIEPNTAV 276

Catalyzes the final step in the metabolic pathway of hydroxyproline.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9DCU9|HOGA1_MOUSE Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Mus musculus GN=Hoga1 PE=1 SV=1

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 126/192 (65%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ   K   +IAG+ CEST+AT+++T   A+ GA+ A+++ P Y++ +
Sbjct: 79  TSLERLEVVSRVRQAIPKDKFLIAGSGCESTQATVEMTVSMAQVGADVAMVVTPCYYRGR 138

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +++ VD +V L+ H NI G+KD+  D  +
Sbjct: 139 MSSAALIHHYTKVADVSPIPVVLYSVPANTGLELPVDAVVTLSQHPNIIGLKDSGGDVTR 198

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T   +F V AGSAG+LL+   VG  GGI  L+ VLG  +C+L  L   G+WE 
Sbjct: 199 IGLIVHKTSKQDFQVLAGSAGFLLASYAVGAVGGICGLANVLGAQVCQLERLCLTGQWEA 258

Query: 184 AMKLQHRLVKPD 195
           A +LQHRL++P+
Sbjct: 259 AQELQHRLIEPN 270

Catalyzes the final step in the metabolic pathway of hydroxyproline.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|P0CL20|HOGA1_COCIM Putative 4-hydroxy-2-oxoglutarate aldolase, mitochondrial OS=Coccidioides immitis (strain RS) GN=CIMG_00151 PE=3 SV=1

 Score =  113 bits (282), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 6/195 (3%)

Query: 2   SNSFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCP 59
           + +F  T EE+ ++I+T R+       I+AG    STR  ++    A+ AGAN  L+L P
Sbjct: 52  AEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 111

Query: 60  YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN-IDISVDTLVKLAH-HENIRGVK 117
            YF K  T  +I   F  V+  SP+PV+IYN   V N ID+  D +  +A  + N+ GVK
Sbjct: 112 AYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVK 171

Query: 118 DT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDL 175
            T     K+  +A       FSVF G + +L+ GL VG AG I A + V    + ++Y+L
Sbjct: 172 LTCASVGKITRLAATLPPAAFSVFGGQSDFLIGGLSVGSAGCIAAFANVFPKTVSKIYEL 231

Query: 176 AKAGKWEEAMKLQHR 190
            KAGK ++AM+L  +
Sbjct: 232 YKAGKVDQAMELHRK 246

May catalyze the final step in the metabolic pathway of hydroxyproline.

Coccidioides immitis (strain RS) (taxid: 246410)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8EQJ1|DAPA_OCEIH 4-hydroxy-tetrahydrodipicolinate synthase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=dapA PE=3 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 112/189 (59%), Gaps = 7/189 (3%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE++K+   + ++    +  IAGT    T+A+I+LT++ AK G +  +++ PYY   K
Sbjct: 53  THEERIKLFEYVVKKVNGAVPVIAGTGSNYTKASIELTKEVAKTGVDGVMLVAPYY--NK 110

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNI-K 123
            ++D +YEHF  +A+++ +PV++YN    T +D+ V T+V+L+  +NI  +KD + N+ K
Sbjct: 111 PSQDSMYEHFKVIAESTELPVMLYNVPGRTGVDMDVSTVVRLSQIDNIVSIKDASGNLEK 170

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           + N+   T D NFSV++G     L  L +G  G ++  S ++G  + E+    + G+  E
Sbjct: 171 MTNIIRLTDD-NFSVYSGEDSLTLPALAIGADGIVSVSSHIIGNDMQEMIQRFEQGQVAE 229

Query: 184 AMKLQHRLV 192
           A  +  R++
Sbjct: 230 AANIHQRVL 238

Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 2

>sp|B9DS79|DAPA_STRU0 4-hydroxy-tetrahydrodipicolinate synthase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dapA PE=3 SV=1

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 5/188 (2%)

Query: 8   TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQKAAKAGANAA-LILCPYYFQK 64
           T EE+L++ S +++    +  +IAG     TR ++D  ++ A  G  AA L + PYY   
Sbjct: 58  THEEELELFSEVQRIVNGRVPLIAGIGTNDTRDSVDFAKEVANFGGFAAGLAIVPYY--N 115

Query: 65  KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKL 124
           K T++ +Y+HF+++A+ S +P+IIYN      +D+  DTL+KLA H NI GVKD  N+  
Sbjct: 116 KPTQEGLYQHFLAIAEASSLPIIIYNIPGRVVVDLHPDTLLKLAQHPNIIGVKDCTNLDH 175

Query: 125 ANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEA 184
                + K  +F ++ G  G +   + +G  G I+  S   G  I E+ +    G+ +EA
Sbjct: 176 LAYIIENKPEDFLIYTGEDGQIFHAMNLGADGVISVASHTNGSEIFEMINHITNGRIKEA 235

Query: 185 MKLQHRLV 192
            ++Q R +
Sbjct: 236 AQIQRRFL 243

Streptococcus uberis (strain ATCC BAA-854 / 0140J) (taxid: 218495)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 2

>sp|B1I383|DAPA_DESAP 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dapA PE=3 SV=1

 Score = 96.7 bits (239), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 106/187 (56%), Gaps = 5/187 (2%)

Query: 8   TEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           ++EEKL++  T+  E   +  ++AGT   ST+ +I LTQ A K G +A +++CPYY   K
Sbjct: 55  SKEEKLELFRTVVDEVGGRAVVVAGTGSYSTKDSIALTQAAEKLGVDAVMLVCPYY--NK 112

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
            ++D +Y+HF +VA+++ +PV+IYN    T+I++   T  +LA   NI  +K+ + N+  
Sbjct: 113 PSQDGLYQHFRAVAESTNLPVMIYNIPGRTSINLLPQTCARLAEIGNIVAIKEASGNMDQ 172

Query: 125 ANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEA 184
           A    +    +F +++G     L  L VG  G ++  + ++GG I E+ +   +G    A
Sbjct: 173 ATELRRLLPDHFHIYSGDDSMTLPLLAVGGKGVVSVAAHLVGGKIQEMINAFTSGNITLA 232

Query: 185 MKLQHRL 191
            KL   L
Sbjct: 233 AKLHSSL 239

Desulforudis audaxviator (strain MP104C) (taxid: 477974)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
328720437	319	PREDICTED: probable 4-hydroxy-2-oxogluta	0.954	0.592	0.518	4e-54
148227582	326	probable 4-hydroxy-2-oxoglutarate aldola	0.949	0.576	0.437	7e-43
431838934	370	Dihydrodipicolinate synthase-like, mitoc	0.964	0.516	0.425	1e-42
452085182	328	probable 4-hydroxy-2-oxoglutarate aldola	0.949	0.573	0.437	1e-42
56556268	327	LOC496669 protein [Xenopus (Silurana) tr	0.949	0.574	0.437	1e-42
344274891	327	PREDICTED: probable 4-hydroxy-2-oxogluta	0.964	0.584	0.415	5e-42
449277165	295	Dihydrodipicolinate synthase-like, mitoc	0.954	0.640	0.414	8e-42
432113101	268	Putative 4-hydroxy-2-oxoglutarate aldola	0.949	0.701	0.427	4e-41
355683770	327	N-acetylneuraminate pyruvate lyase 2 [Mu	0.964	0.584	0.415	4e-41
301763210	327	PREDICTED: dihydrodipicolinate synthase-	0.964	0.584	0.410	5e-41

>gi|328720437|ref|XP_003247030.1| PREDICTED: probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/191 (51%), Positives = 143/191 (74%), Gaps = 2/191 (1%)

Query: 10  EEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           EEK++++S +R      K +IAGT CEST+ T DL++ AA+ GA+  L++ P+YF+ +MT
Sbjct: 81  EEKIEMVSKIRSMIGKDKLLIAGTTCESTKMTCDLSKAAAEVGADGVLVMSPFYFKTRMT 140

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANM 127
           E+ +YEHF+SVAD+ P PVI+YN   VT ID+SV+ L K++ H NI GVKD D  KLA +
Sbjct: 141 EESLYEHFVSVADSCPAPVIVYNMVPVTGIDLSVEILKKMSLHPNIVGVKDKDMGKLAAL 200

Query: 128 ANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKL 187
             +T+D  F + AGSA YLL+ +LVGC+GGIN L+AVLG P+C++++LA AG+W+EA++L
Sbjct: 201 VTETRDQRFQIVAGSASYLLAAMLVGCSGGINGLAAVLGEPLCKMHELAAAGRWQEALEL 260

Query: 188 QHRLVKPDVTL 198
           Q +LV  D+ L
Sbjct: 261 QRKLVNIDLLL 271

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148227582|ref|NP_001088351.1| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial precursor [Xenopus laevis] gi|82180296|sp|Q5XGL6.1|DAPAL_XENLA RecName: Full=Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; AltName: Full=Dihydrodipicolinate synthase-like; Short=DHDPS-like protein; AltName: Full=Probable 2-keto-4-hydroxyglutarate aldolase; Short=Probable KHG-aldolase; Flags: Precursor gi|54038471|gb|AAH84421.1| LOC495193 protein [Xenopus laevis]

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 133/192 (69%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+L+++  +RQ    +K I+AG+ CEST+ATI++T + A++GA+  L++ P Y++ K
Sbjct: 82  TREERLEVVRRVRQAVPKEKLIMAGSGCESTQATIEMTVEMARSGADVVLVVTPSYYRGK 141

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           MT   +  H+  VAD+SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 142 MTSSALVHHYTKVADHSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIIGLKDSGGDITR 201

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++TK L F V +GSAG+LL+G  VG  GG+ AL+ VLG  +CEL  L   G+W+E
Sbjct: 202 IGLIIHKTKHLGFQVLSGSAGFLLAGYSVGAVGGVCALANVLGAQVCELEKLCLNGRWQE 261

Query: 184 AMKLQHRLVKPD 195
           A +LQHRL++P+
Sbjct: 262 AKELQHRLIEPN 273

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431838934|gb|ELK00863.1| Dihydrodipicolinate synthase-like, mitochondrial [Pteropus alecto]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 132/195 (67%), Gaps = 4/195 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ   K   +IAG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 128 TSSERLEVVSRVRQAMPKNKLLIAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 187

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ VDT+V L+ H NI G+KD+  D  +
Sbjct: 188 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDTVVTLSQHPNIAGIKDSSGDVTR 247

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  M ++TK  +F V AGSAG+LL+   +G  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 248 IGMMVHKTKRQDFQVLAGSAGFLLASYALGAVGGVCALANVLGAQVCQLERLCLTGQWED 307

Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P+  +
Sbjct: 308 AQKLQHRLIEPNTAV 322

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|452085182|ref|NP_001263607.1| probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [Xenopus (Silurana) tropicalis] gi|124007133|sp|Q5M8W9.2|DAPAL_XENTR RecName: Full=Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; AltName: Full=Dihydrodipicolinate synthase-like; Short=DHDPS-like protein; AltName: Full=Probable 2-keto-4-hydroxyglutarate aldolase; Short=Probable KHG-aldolase; Flags: Precursor

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+L+++  +RQ    +K I+AG+ CEST+ATI++T + A++GA+A L++ P Y++ K
Sbjct: 84  TREERLEVVRRVRQAVPKEKLIMAGSGCESTQATIEMTVEMAQSGADAVLVVTPSYYRGK 143

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           MT   +  H+  VAD+SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 144 MTSSALVHHYTKVADHSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIIGLKDSGGDITR 203

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++TK L F V +GSAG+LL+G  VG  GG+ AL+ VLG  +CEL  L   G+W+E
Sbjct: 204 IGLIIHKTKHLGFQVLSGSAGFLLAGYSVGAVGGVCALANVLGAQVCELERLCLNGRWQE 263

Query: 184 AMKLQHRLVKPD 195
           A +LQ+RL++P+
Sbjct: 264 AKELQYRLIEPN 275

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|56556268|gb|AAH87798.1| LOC496669 protein [Xenopus (Silurana) tropicalis]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/192 (43%), Positives = 134/192 (69%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+L+++  +RQ    +K I+AG+ CEST+ATI++T + A++GA+A L++ P Y++ K
Sbjct: 83  TREERLEVVRRVRQAVPKEKLIMAGSGCESTQATIEMTVEMAQSGADAVLVVTPSYYRGK 142

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           MT   +  H+  VAD+SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 143 MTSSALVHHYTKVADHSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIIGLKDSGGDITR 202

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++TK L F V +GSAG+LL+G  VG  GG+ AL+ VLG  +CEL  L   G+W+E
Sbjct: 203 IGLIIHKTKHLGFQVLSGSAGFLLAGYSVGAVGGVCALANVLGAQVCELERLCLNGRWQE 262

Query: 184 AMKLQHRLVKPD 195
           A +LQ+RL++P+
Sbjct: 263 AKELQYRLIEPN 274

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344274891|ref|XP_003409248.1| PREDICTED: probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial-like isoform 2 [Loxodonta africana]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 133/195 (68%), Gaps = 4/195 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ T K   +IAG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 85  TSTERLEVVSRVRQATPKDKLLIAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 144

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ VD ++ L+ H NI G+KD+  D  +
Sbjct: 145 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVITLSQHPNIVGIKDSGGDVTR 204

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T+  NF V AGSAG+LL+   +G  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 205 IGLIVHKTRKQNFQVLAGSAGFLLASYALGAVGGVCALANVLGAQVCQLERLCLTGQWED 264

Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P++ +
Sbjct: 265 AQKLQHRLIEPNIAV 279

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449277165|gb|EMC85441.1| Dihydrodipicolinate synthase-like, mitochondrial, partial [Columba livia]

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 132/193 (68%), Gaps = 4/193 (2%)

Query: 10  EEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
            E+L+++S +R+     + ++AG+ CEST+ATI+LT   A+AGAN AL++ P Y++  MT
Sbjct: 55  HERLEVVSCVRRALPRDRLLLAGSGCESTQATIELTSSMAEAGANVALVVTPCYYRGAMT 114

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLA 125
              + +H+  VAD SPIPV++Y+    T +D+ ++ ++ LA H NI G+KD+  D  ++ 
Sbjct: 115 SAALVQHYTEVADASPIPVVLYSVPANTGLDLPLEAVLTLAQHPNILGIKDSSGDITRMG 174

Query: 126 NMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAM 185
            M ++T+  +F V AGSAG+LL+   +G +GG+ AL+ VLG P+C+L  L + G+W+EA 
Sbjct: 175 LMVHKTRQEDFQVLAGSAGFLLASYALGASGGVCALANVLGAPLCQLDHLCREGQWQEAR 234

Query: 186 KLQHRLVKPDVTL 198
            LQHRL++P+  +
Sbjct: 235 DLQHRLIEPNTAV 247

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432113101|gb|ELK35679.1| Putative 4-hydroxy-2-oxoglutarate aldolase, mitochondrial [Myotis davidii]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 129/192 (67%), Gaps = 4/192 (2%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T   A+ GA+ A++L P Y++ +
Sbjct: 26  TSSERLEVVSRVRQAMPKDKLLVAGSGCESTQATVEMTVSMAQVGADVAMVLTPCYYRGR 85

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++YN    T +D+ VDT+V L+ H NI G+KD+  D  +
Sbjct: 86  MSSAALIHHYTKVADLSPIPVVLYNVPANTGLDLPVDTVVTLSQHPNIIGIKDSGGDVTR 145

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  M ++T+  +F V AGSAG+LL+   VG  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 146 IGLMIHKTRRQDFQVLAGSAGFLLASYAVGAVGGVCALANVLGAQVCQLERLCLTGQWED 205

Query: 184 AMKLQHRLVKPD 195
           A KLQ RL++P+
Sbjct: 206 AQKLQLRLIEPN 217

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355683770|gb|AER97188.1| N-acetylneuraminate pyruvate lyase 2 [Mustela putorius furo]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 131/195 (67%), Gaps = 4/195 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 85  TSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVEMTVSMAQVGADAAIVVTPCYYRGR 144

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ VD +V L+ H NI G+KD+  D  K
Sbjct: 145 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGIKDSGGDVTK 204

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T+  +F V AGSAG+LL+   VG  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 205 MGLLVHKTRRQDFQVLAGSAGFLLASYAVGAVGGVCALANVLGAQVCQLERLCLTGQWED 264

Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P+  +
Sbjct: 265 ARKLQHRLIEPNTAV 279

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301763210|ref|XP_002917023.1| PREDICTED: dihydrodipicolinate synthase-like, mitochondrial-like [Ailuropoda melanoleuca] gi|281348500|gb|EFB24084.1| hypothetical protein PANDA_005187 [Ailuropoda melanoleuca]

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 131/195 (67%), Gaps = 4/195 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S  RQ   K   ++AG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 85  TSSERLEVVSRARQAMSKDKLLLAGSGCESTQATVEMTVSMAQVGADAAIVVTPCYYRGR 144

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ +D +V L+ H NI G+KD+  D  +
Sbjct: 145 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPMDAVVTLSQHPNIVGIKDSGGDLTR 204

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  M ++T+  +F V AGSAG+LL+   VG  GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 205 MGLMVHKTRRQDFQVLAGSAGFLLASYAVGAVGGVCALANVLGAQVCQLERLCLTGQWED 264

Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P++ +
Sbjct: 265 AQKLQHRLIEPNIAV 279

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|F1PVY8	319	HOGA1 "Uncharacterized protein	0.964	0.598	0.338	2e-31
UNIPROTKB|Q0P5I5	327	HOGA1 "Probable 4-hydroxy-2-ox	0.964	0.584	0.333	4.2e-31
UNIPROTKB|Q86XE5	327	HOGA1 "Probable 4-hydroxy-2-ox	0.964	0.584	0.338	4.2e-31
UNIPROTKB|F1S8X9	326	HOGA1 "Uncharacterized protein	0.964	0.585	0.338	4.2e-31
UNIPROTKB|E1C1D7	279	HOGA1 "Uncharacterized protein	0.949	0.673	0.333	4.9e-30
ZFIN|ZDB-GENE-040426-2242	324	hoga1 "4-hydroxy-2-oxoglutarat	0.964	0.589	0.323	2.1e-29
MGI|MGI:1914682	321	Hoga1 "4-hydroxy-2-oxoglutarat	0.964	0.595	0.333	3.4e-29
UNIPROTKB|J9P6C5	204	HOGA1 "Uncharacterized protein	0.878	0.852	0.340	5.6e-29
RGD|1310475	321	Hoga1 "4-hydroxy-2-oxoglutarat	0.964	0.595	0.328	2.2e-27
TIGR_CMR|BA_3935	292	BA_3935 "dihydrodipicolinate s	0.924	0.626	0.3	4.4e-20

UNIPROTKB|F1PVY8 HOGA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 66/195 (33%), Positives = 113/195 (57%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T           +++ P Y++ +
Sbjct:    77 TSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVEMTVSMAQVGADAAIVVTPCYYRGR 136

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M+   +  H+  VAD SPIPV++Y+    T +D+ +D +V L+ H NI G+KD+  D  +
Sbjct:   137 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPIDAVVTLSQHPNIVGIKDSGGDVTR 196

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             L  + ++T+  +F V                 GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct:   197 LGLIVHKTRKQDFQVLAGSAGFLLASYAVGAVGGVCALANVLGAQVCQLERLCLTGQWED 256

Query:   184 AMKLQHRLVKPDVTL 198
             A KLQHRL++P+  +
Sbjct:   257 AQKLQHRLIEPNTAV 271

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|Q0P5I5 HOGA1 "Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 65/195 (33%), Positives = 112/195 (57%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T  E+L+++S  RQ   K   ++AG+ CEST+AT+++T           +++ P Y++ +
Sbjct:    85 TSSERLEVVSRARQALPKDKLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 144

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M+   +  H+  VAD SP+PV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct:   145 MSSAALIHHYTKVADLSPVPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGIKDSGGDVTR 204

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +  + ++T+  +F V                 GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct:   205 IGLIVHKTRSQDFQVLAGSAGFLLASYAIGAVGGVCALANVLGSQVCQLERLCLTGQWED 264

Query:   184 AMKLQHRLVKPDVTL 198
             A KLQHRL++P+  +
Sbjct:   265 AQKLQHRLIEPNTAV 279

GO:0005739 "mitochondrion" evidence=IDA

GO:0009436 "glyoxylate catabolic process" evidence=IDA

GO:0008700 "4-hydroxy-2-oxoglutarate aldolase activity" evidence=IDA

GO:0042866 "pyruvate biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033609 "oxalate metabolic process" evidence=IEA

GO:0019470 "4-hydroxyproline catabolic process" evidence=IEA

UNIPROTKB|Q86XE5 HOGA1 "Probable 4-hydroxy-2-oxoglutarate aldolase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 66/195 (33%), Positives = 113/195 (57%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T           +++ P Y++ +
Sbjct:    85 TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 144

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M+   +  H+  VAD SPIPV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct:   145 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTR 204

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +  + ++T+  +F V                 GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct:   205 IGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWED 264

Query:   184 AMKLQHRLVKPDVTL 198
             A KLQHRL++P+  +
Sbjct:   265 AQKLQHRLIEPNAAV 279

GO:0008700 "4-hydroxy-2-oxoglutarate aldolase activity" evidence=ISS;IDA

GO:0009436 "glyoxylate catabolic process" evidence=IMP

GO:0019470 "4-hydroxyproline catabolic process" evidence=IDA

GO:0042866 "pyruvate biosynthetic process" evidence=IDA

GO:0046487 "glyoxylate metabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0033609 "oxalate metabolic process" evidence=IMP

UNIPROTKB|F1S8X9 HOGA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 66/195 (33%), Positives = 113/195 (57%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T           +++ P Y++ +
Sbjct:    84 TSSERLEVVSRVRQAMPKDKLLLAGSGCESTQATVEMTVSMAQVGADAVMVVTPCYYRGR 143

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M+   +  H+  VAD SPIPV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct:   144 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGIKDSGGDVTR 203

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +  + ++T+  +F V                 GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct:   204 IGLIVHKTRRQDFQVLAGSAGFLLASYAVGAVGGVCALANVLGAQVCQLERLCLTGQWED 263

Query:   184 AMKLQHRLVKPDVTL 198
             A KLQHRL++P+  +
Sbjct:   264 AQKLQHRLIEPNTAV 278

GO:0042866 "pyruvate biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033609 "oxalate metabolic process" evidence=IEA

GO:0019470 "4-hydroxyproline catabolic process" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|E1C1D7 HOGA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 64/192 (33%), Positives = 114/192 (59%)

Query:    11 EKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTE 68
             E+L+++S +R+   +   ++AG+ CESTRATI+LT           L++ P Y++  M+ 
Sbjct:    87 ERLELVSRVRRALPRDRLLLAGSGCESTRATIELTGSMAEAGADAALVVTPCYYRGAMSS 146

Query:    69 DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLAN 126
               +  H+  VA+ SP+PV++Y+    TN+++ V+ ++ LA H NI G+KD+  D  ++  
Sbjct:   147 AALVRHYTEVAEASPVPVVLYSVPANTNLELPVEAVLTLAQHPNIIGIKDSGGDITRIGL 206

Query:   127 MANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMK 186
             + ++T+  +F V                +GGI AL+ VLG P+C+L  L + G+W+EA +
Sbjct:   207 IVHKTQQEDFQVLSGSAGFLLASYAVGASGGICALANVLGAPLCQLEHLCRQGRWQEARE 266

Query:   187 LQHRLVKPDVTL 198
             LQ RL++P+  +
Sbjct:   267 LQQRLIEPNAAV 278

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

GO:0019470 "4-hydroxyproline catabolic process" evidence=IEA

GO:0033609 "oxalate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042866 "pyruvate biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-040426-2242 hoga1 "4-hydroxy-2-oxoglutarate aldolase 1" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 63/195 (32%), Positives = 113/195 (57%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T EE+++++  ++Q   K   ++AG+ CESTRATI ++Q          L++ P +++ +
Sbjct:    82 TAEERVEVVKRVKQALPKDKLVMAGSGCESTRATIQMSQRMADAGADCVLVVTPCFYRGR 141

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M    +  H+  VAD+  +PV++Y+    T +D+ VD +++L+ H NI G+KD+  D  +
Sbjct:   142 MDSRALINHYSKVADSCSVPVVLYSVPANTGLDLPVDAVIQLSKHPNIVGLKDSGGDITR 201

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +A M  +T+  +F V                 GG+ AL+ VLG  +CEL  L  +G+W+E
Sbjct:   202 IALMVQKTRSQDFQVLAGSAGFLMAAYAVGAVGGVCALANVLGQQVCELAQLCVSGRWDE 261

Query:   184 AMKLQHRLVKPDVTL 198
             A +LQ+RL++P+  +
Sbjct:   262 AKELQYRLIEPNTAV 276

GO:0016829 "lyase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008700 "4-hydroxy-2-oxoglutarate aldolase activity" evidence=IEA;ISS

GO:0009436 "glyoxylate catabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1914682 Hoga1 "4-hydroxy-2-oxoglutarate aldolase 1" [Mus musculus (taxid:10090)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 65/195 (33%), Positives = 110/195 (56%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T  E+L+++S +RQ   K   +IAG+ CEST+AT+++T           +++ P Y++ +
Sbjct:    79 TSLERLEVVSRVRQAIPKDKFLIAGSGCESTQATVEMTVSMAQVGADVAMVVTPCYYRGR 138

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M+   +  H+  VAD SPIPV++Y+    T +++ VD +V L+ H NI G+KD+  D  +
Sbjct:   139 MSSAALIHHYTKVADVSPIPVVLYSVPANTGLELPVDAVVTLSQHPNIIGLKDSGGDVTR 198

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +  + ++T   +F V                 GGI  L+ VLG  +C+L  L   G+WE 
Sbjct:   199 IGLIVHKTSKQDFQVLAGSAGFLLASYAVGAVGGICGLANVLGAQVCQLERLCLTGQWEA 258

Query:   184 AMKLQHRLVKPDVTL 198
             A +LQHRL++P+  +
Sbjct:   259 AQELQHRLIEPNTAV 273

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008700 "4-hydroxy-2-oxoglutarate aldolase activity" evidence=ISO

GO:0009436 "glyoxylate catabolic process" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0019470 "4-hydroxyproline catabolic process" evidence=ISO

GO:0033609 "oxalate metabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042866 "pyruvate biosynthetic process" evidence=ISO

GO:0046487 "glyoxylate metabolic process" evidence=ISO

UNIPROTKB|J9P6C5 HOGA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 60/176 (34%), Positives = 102/176 (57%)

Query:    25 KTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPI 84
             K ++AG+ CEST+AT+++T           +++ P Y++ +M+   +  H+  VAD SPI
Sbjct:     5 KLLLAGSGCESTQATVEMTVSMAQVGADAAIVVTPCYYRGRMSSAALIHHYTKVADLSPI 64

Query:    85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFXXX 142
             PV++Y+    T +D+ +D +V L+ H NI G+KD+  D  +L  + ++T+  +F V    
Sbjct:    65 PVVLYSVPANTGLDLPIDAVVTLSQHPNIVGIKDSGGDVTRLGLIVHKTRKQDFQVLAGS 124

Query:   143 XXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198
                          GG+ AL+ VLG  +C+L  L   G+WE+A KLQHRL++P+  +
Sbjct:   125 AGFLLASYAVGAVGGVCALANVLGAQVCQLERLCLTGQWEDAQKLQHRLIEPNTAV 180

GO:0016829 "lyase activity" evidence=IEA

RGD|1310475 Hoga1 "4-hydroxy-2-oxoglutarate aldolase 1" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/195 (32%), Positives = 107/195 (54%)

Query:     8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T  E+L+++S +RQ   K   +IAG+ CEST+AT+++T           +++ P Y++ +
Sbjct:    79 TSLERLEVVSRVRQAIPKDKLLIAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 138

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
             M    +  H+  VAD SPIPV++Y+    T +++ VD +V L+ H NI G+KD+  D  +
Sbjct:   139 MNSAALIHHYTKVADLSPIPVVLYSVPGNTGLELPVDAVVTLSQHPNIIGLKDSGGDVTR 198

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
                + ++T   +F V                 GGI  L+ VLG  +C+L  L   G+ E 
Sbjct:   199 TGLIVHKTSKQDFQVLAGSVGFLLASYAVGAVGGICGLANVLGAQVCQLERLCLTGQGEA 258

Query:   184 AMKLQHRLVKPDVTL 198
             A +LQHRL++P+  +
Sbjct:   259 AQRLQHRLIEPNTAV 273

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008700 "4-hydroxy-2-oxoglutarate aldolase activity" evidence=ISO

GO:0009436 "glyoxylate catabolic process" evidence=IEA;ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0019470 "4-hydroxyproline catabolic process" evidence=IEA;ISO

GO:0033609 "oxalate metabolic process" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0042866 "pyruvate biosynthetic process" evidence=IEA;ISO

GO:0046487 "glyoxylate metabolic process" evidence=ISO

TIGR_CMR|BA_3935 BA_3935 "dihydrodipicolinate synthase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 57/190 (30%), Positives = 104/190 (54%)

Query:     8 TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
             T EEK+ +   +     K +  IAGT   +T A+IDLT+          +++ PYY   K
Sbjct:    54 TSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY--NK 111

Query:    66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
              +++ +Y+HF ++A+++P+PV++YN    + + ISVDT+V+L+  ENI  +KD   D + 
Sbjct:   112 PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLT 171

Query:   124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +  +  +T D +F+V+                G ++  S V+G  + E+    +AG++++
Sbjct:   172 MTEIIEKTAD-DFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGEFKK 230

Query:   184 AMKLQHRLVK 193
             A KL   LV+
Sbjct:   231 AQKLHQLLVR 240

GO:0008840 "4-hydroxy-tetrahydrodipicolinate synthase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5D2Q5	DAPA_PELTS	4, ., 2, ., 1, ., 5, 2	0.3031	0.9141	0.6156	yes	N/A
O26892	DAPA_METTH	4, ., 2, ., 1, ., 5, 2	0.3298	0.9191	0.6431	yes	N/A
B9M380	DAPA_GEOSF	4, ., 2, ., 1, ., 5, 2	0.3048	0.9191	0.6275	yes	N/A
A9HIW2	DAPA_GLUDA	4, ., 2, ., 1, ., 5, 2	0.3244	0.9191	0.6127	yes	N/A
Q8Y099	DAPA_RALSO	4, ., 2, ., 1, ., 5, 2	0.3297	0.9292	0.6258	yes	N/A
O29352	DAPA_ARCFU	4, ., 2, ., 1, ., 5, 2	0.3060	0.9090	0.6228	yes	N/A
B4SE03	DAPA_PELPB	4, ., 2, ., 1, ., 5, 2	0.3089	0.9242	0.6182	yes	N/A
Q4FLS1	DAPA_PELUB	4, ., 2, ., 1, ., 5, 2	0.3636	0.9040	0.6109	yes	N/A
A5GD89	DAPA_GEOUR	4, ., 2, ., 1, ., 5, 2	0.3105	0.9040	0.6172	yes	N/A
Q1QTP6	DAPA_CHRSD	4, ., 2, ., 1, ., 5, 2	0.3225	0.9090	0.6122	yes	N/A
B1I383	DAPA_DESAP	4, ., 2, ., 1, ., 5, 2	0.3262	0.9191	0.6190	yes	N/A
O67216	DAPA_AQUAE	4, ., 2, ., 1, ., 5, 2	0.3333	0.9494	0.6394	yes	N/A
A1US27	DAPA_BARBK	4, ., 2, ., 1, ., 5, 2	0.3174	0.9242	0.6224	yes	N/A
B3QM33	DAPA_CHLP8	4, ., 2, ., 1, ., 5, 2	0.3263	0.9292	0.6216	yes	N/A
B8DE74	DAPA_LISMH	4, ., 2, ., 1, ., 5, 2	0.3298	0.9141	0.6177	yes	N/A
Q1WU86	DAPA_LACS1	4, ., 2, ., 1, ., 5, 2	0.3315	0.9141	0.6241	yes	N/A
C1L2Z1	DAPA_LISMC	4, ., 2, ., 1, ., 5, 2	0.3247	0.9141	0.6177	yes	N/A
O58577	DAPAL_PYRHO	4, ., -, ., -, ., -	0.3417	0.9444	0.6515	yes	N/A
B3EH29	DAPA_CHLL2	4, ., 2, ., 1, ., 5, 2	0.3027	0.9040	0.6047	yes	N/A
Q8EQJ1	DAPA_OCEIH	4, ., 2, ., 1, ., 5, 2	0.3227	0.9191	0.6169	yes	N/A
B5YKK4	DAPA_THEYD	4, ., 2, ., 1, ., 5, 2	0.3351	0.9090	0.6185	yes	N/A
A5FZS7	DAPA_ACICJ	4, ., 2, ., 1, ., 5, 2	0.34	0.9242	0.6267	yes	N/A
C0QT41	DAPA_PERMH	4, ., 2, ., 1, ., 5, 2	0.3076	0.9545	0.6450	yes	N/A
Q8KC06	DAPA_CHLTE	4, ., 2, ., 1, ., 5, 2	0.3368	0.9292	0.6216	yes	N/A
Q71ZN5	DAPA_LISMF	4, ., 2, ., 1, ., 5, 2	0.3247	0.9141	0.6177	yes	N/A
Q8Y766	DAPA_LISMO	4, ., 2, ., 1, ., 5, 2	0.3247	0.9141	0.6177	yes	N/A
Q92BS0	DAPA_LISIN	4, ., 2, ., 1, ., 5, 2	0.3247	0.9141	0.6177	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!
4th Layer	4.2.1.52	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
cd00408	281	cd00408, DHDPS-like, Dihydrodipicolinate synthase	5e-60
COG0329	299	COG0329, DapA, Dihydrodipicolinate synthase/N-acet	1e-50
cd00950	284	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDP	9e-45
PRK03170	292	PRK03170, PRK03170, dihydrodipicolinate synthase;	8e-43
pfam00701	289	pfam00701, DHDPS, Dihydrodipicolinate synthetase f	2e-33
TIGR00674	285	TIGR00674, dapA, dihydrodipicolinate synthase	5e-29
cd00954	288	cd00954, NAL, N-Acetylneuraminic acid aldolase, al	8e-20
TIGR02313	294	TIGR02313, HpaI-NOT-DapA, 2,4-dihydroxyhept-2-ene-	3e-18
PRK04147	293	PRK04147, PRK04147, N-acetylneuraminate lyase; Pro	7e-18
PLN02417	280	PLN02417, PLN02417, dihydrodipicolinate synthase	1e-14
TIGR00683	290	TIGR00683, nanA, N-acetylneuraminate lyase	6e-14
cd00953	279	cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconat	1e-12
cd00951	289	cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydra	3e-09
PRK03620	303	PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate deh	1e-08
cd00952	309	cd00952, CHBPH_aldolase, Trans-o-hydroxybenzyliden	3e-06
TIGR03249	296	TIGR03249, KdgD, 5-dehydro-4-deoxyglucarate dehydr	1e-04

>gnl|CDD|188630 cd00408, DHDPS-like, Dihydrodipicolinate synthase family

 Score =  188 bits (480), Expect = 5e-60
 Identities = 70/195 (35%), Positives = 107/195 (54%), Gaps = 7/195 (3%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T+EE+ ++I  + +       +IAG    STR  I+L + A +AGA+  L++ PYY   K
Sbjct: 48  TDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYN--K 105

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
            +++ I  HF +VAD S +PVI+YN    T +D+S +T+ +LA H NI G+KD+  D  +
Sbjct: 106 PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDR 165

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           L  +       +F+V +G    LL  L +G  G I+  + V       LY+ A+AG  EE
Sbjct: 166 LTRLIALLGP-DFAVLSGDDDLLLPALALGADGAISGAANVAPKLAVALYEAARAGDLEE 224

Query: 184 AMKLQHRLVKPDVTL 198
           A  LQ RL+     L
Sbjct: 225 ARALQDRLLPLIEAL 239

Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. Length = 281

>gnl|CDD|223406 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score =  165 bits (419), Expect = 1e-50
 Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+ +++  + +       +IAG    ST   I+L + A K GA+  L++ PYY   K
Sbjct: 55  TLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN--K 112

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNI-K 123
            +++ +Y HF ++A+   +PVI+YN    T +D+S +T+ +LA H NI GVKD + ++ +
Sbjct: 113 PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDR 172

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           L  +     D +F V +G     L  LL+G  G I+  + V      ELY  AKAG  EE
Sbjct: 173 LEEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTANVAPELAVELYRAAKAGDIEE 232

Query: 184 AMKLQHRLVK 193
           A +LQ RL+ 
Sbjct: 233 ARELQDRLLP 242

Length = 299

>gnl|CDD|188637 cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)

 Score =  149 bits (379), Expect = 9e-45
 Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 17/193 (8%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           ++EE   +I  + +     +  IAGT   +T   I+LT++A KAGA+AAL++ PYY   K
Sbjct: 51  SDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY--NK 108

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
            +++ +Y HF ++A+ + +PVI+YN    T ++I  +T+++LA H NI G+K+ T ++  
Sbjct: 109 PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDL-- 166

Query: 125 ANMANQTKDL------NFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKA 178
               ++  +L      +F+V +G     L  L +G  G I+  + V    + E+   A A
Sbjct: 167 ----DRVSELIALCPDDFAVLSGDDALTLPFLALGGVGVISVAANVAPKLMAEMVRAALA 222

Query: 179 GKWEEAMKLQHRL 191
           G  E+A +L  +L
Sbjct: 223 GDLEKARELHRKL 235

Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. Length = 284

>gnl|CDD|235107 PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional

 Score =  144 bits (366), Expect = 8e-43
 Identities = 63/189 (33%), Positives = 108/189 (57%), Gaps = 5/189 (2%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE  ++I  + +       +IAGT   ST   I+LT+ A KAGA+ AL++ PYY   K
Sbjct: 52  THEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY--NK 109

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
            T++ +Y+HF ++A+ + +P+I+YN    T +DI  +T+ +LA H NI G+K+ T +++ 
Sbjct: 110 PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGDLER 169

Query: 125 ANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEA 184
            +   +    +F+V++G     L  L +G  G I+  + V    + E+ D A AG + EA
Sbjct: 170 VSELIELVPDDFAVYSGDDALALPFLALGGVGVISVAANVAPKEMAEMCDAALAGDFAEA 229

Query: 185 MKLQHRLVK 193
            ++  RL+ 
Sbjct: 230 REIHRRLLP 238

Length = 292

>gnl|CDD|201403 pfam00701, DHDPS, Dihydrodipicolinate synthetase family

 Score =  120 bits (303), Expect = 2e-33
 Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 5/185 (2%)

Query: 10  EEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           EE  ++I     E K  I  IAGT   STR  I L Q A  AGA+  L + PYY   K +
Sbjct: 54  EEHEQLIEITVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAGADGVLAVTPYYN--KPS 111

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLAN 126
           ++ +Y+HF ++A  + +PVI+YN    T  D++ +T+ +LA   N+ GVKD   +++   
Sbjct: 112 QEGLYQHFKAIAAATDLPVILYNVPSRTGQDLTPETIERLAECPNVVGVKDAVGDLERME 171

Query: 127 MANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMK 186
              +    +F++ +G     LS L +G  G I+  S +    + ++Y   K G +  A  
Sbjct: 172 NIRKRAGPDFTILSGDDETALSYLSLGADGVISVTSNIAPKLMRDIYRALKNGDFATAAL 231

Query: 187 LQHRL 191
           L  +L
Sbjct: 232 LNEKL 236

This family has a TIM barrel structure. Length = 289

>gnl|CDD|129757 TIGR00674, dapA, dihydrodipicolinate synthase

 Score =  108 bits (272), Expect = 5e-29
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 5/189 (2%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           + EE  K+I  +         +IAGT   +T   I LT+ A   GA+  L++ PYY   K
Sbjct: 49  SHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY--NK 106

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
            T++ +Y+HF ++A+   +P+I+YN    T + +  +T+ +LA   NI  +K+ T N++ 
Sbjct: 107 PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLER 166

Query: 125 ANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEA 184
            +        +F V +G     L  + +G  G I+  + V    + E+ + A  G + EA
Sbjct: 167 ISEIKAIAPDDFVVLSGDDALTLPMMALGGKGVISVTANVAPKLMKEMVNNALEGDFAEA 226

Query: 185 MKLQHRLVK 193
            ++  +L+ 
Sbjct: 227 REIHQKLMP 235

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment [Amino acid biosynthesis, Aspartate family]. Length = 285

>gnl|CDD|188641 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL)

 Score = 84.3 bits (209), Expect = 8e-20
 Identities = 45/187 (24%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 7   STEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK 64
           S EE K  I   + +  K   T+IA     + + + +L + A + G +A   + P+Y+  
Sbjct: 52  SVEERKQ-IAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYY-- 108

Query: 65  KMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTD-NI 122
           K + + I +++  +   +  +P+IIY+   +T ++++++  ++L    N+ GVK T  ++
Sbjct: 109 KFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDL 168

Query: 123 KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWE 182
                       +  V  G    LLS L +G  G I +   V G    ++++   AG  +
Sbjct: 169 YDLERIRAASPEDKLVLNGFDEMLLSALALGADGAIGSTYNVNGKRYRKIFEAFNAGDID 228

Query: 183 EAMKLQH 189
            A +LQH
Sbjct: 229 TARELQH 235

N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. Length = 288

>gnl|CDD|131366 TIGR02313, HpaI-NOT-DapA, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

 Score = 80.0 bits (197), Expect = 3e-18
 Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 26/204 (12%)

Query: 4   SFKSTEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF 62
              + EE K  I + + Q   +     GT   +   T++LT+ A +AGA+AA+++ PYY 
Sbjct: 48  GSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY- 106

Query: 63  QKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN 121
             K  ++ +Y+HF  VAD  P  P+IIYN       +I+  T+ +L         KD  N
Sbjct: 107 -NKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARL--------RKDCPN 157

Query: 122 IKLANMANQTKDL------------NFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPI 169
           I  A  +N  KD             +F +F G     L  L +G AG I A + V    +
Sbjct: 158 IVGAKESN--KDFEHLNHLFLEAGRDFLLFCGIELLCLPMLAIGAAGSIAATANVEPKEV 215

Query: 170 CELYDLAKAGKWEEAMKLQHRLVK 193
            EL + A+AG  + A  L   L++
Sbjct: 216 AELCEAAEAGDIKGAQDLHFELLE 239

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. Length = 294

>gnl|CDD|179749 PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 9/187 (4%)

Query: 7   STEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK 64
           STEE+K +++  + +E K    +IA     +T    +L + A + G +A   + P+Y+  
Sbjct: 55  STEEKK-QVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYY-- 111

Query: 65  KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNI 122
             + + I +++  + D++  P+I+YN   +T +++S+D   +L     + GVK T  D  
Sbjct: 112 PFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDLY 171

Query: 123 KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWE 182
           +L  +     D    ++ G      SGLL G  G I +   V G    ++++ AKAG  +
Sbjct: 172 QLERIRKAFPDK--LIYNGFDEMFASGLLAGADGAIGSTYNVNGWRARQIFEAAKAGDIQ 229

Query: 183 EAMKLQH 189
           EA +LQH
Sbjct: 230 EAQELQH 236

Length = 293

>gnl|CDD|178038 PLN02417, PLN02417, dihydrodipicolinate synthase

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 27  IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +I  T   STR  I  T++    G +AAL + PYY  K   E LI +HF +V D  P   
Sbjct: 73  VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY-GKTSQEGLI-KHFETVLDMGP--T 128

Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
           IIYN    T  DI  + + K+A H N  GVK+
Sbjct: 129 IIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKE 160

Length = 280

>gnl|CDD|188072 TIGR00683, nanA, N-acetylneuraminate lyase

 Score = 68.1 bits (166), Expect = 6e-14
 Identities = 45/191 (23%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 4   SFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
           +F  + EEK +I    + E K  I  IA     + +  ++L + A + G +    + P+Y
Sbjct: 48  NFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 107

Query: 62  FQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT- 119
           ++    E  I  ++ ++   +  + +I+Y+  F+T +++ ++   +L  +  + GVK T 
Sbjct: 108 YKFSFPE--IKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTA 165

Query: 120 -DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKA 178
            D   L  +     +    ++AG    +L    +G  G I +   V G    ++++L KA
Sbjct: 166 GDFYLLERLKKAYPNH--LIWAGFDEMMLPAASLGVDGAIGSTFNVNGVRARQIFELTKA 223

Query: 179 GKWEEAMKLQH 189
           GK +EA+++QH
Sbjct: 224 GKLQEALEIQH 234

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 290

>gnl|CDD|188640 cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconate) aldolases found in archaea

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 10  EEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           +EKL+++      T K I  +     E +   I+L + A   G  A   L PYYF   + 
Sbjct: 52  QEKLELLKAYSDITDKVIFQVGSLNLEES---IELARAAKSFGIYAIASLPPYYF-PGIP 107

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDTDNIKLAN 126
           E+ + ++F  ++  SP P  IYN    T  DI+     ++     +I GVKDT N  +++
Sbjct: 108 EEWLIKYFTDIS--SPYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDT-NEDISH 164

Query: 127 MANQTKDL--NFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEA 184
           M    K L  +F V++G    + S L  G  G + A S  L     ++ D       E+A
Sbjct: 165 MLE-YKRLVPDFKVYSGPDSLIFSALRSGLDGSVAAASNYLPEVFVKIKDHVAI---EDA 220

Query: 185 MKLQ 188
            KLQ
Sbjct: 221 FKLQ 224

KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. Length = 279

>gnl|CDD|188638 cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH)

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 5   FKSTEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYY 61
           F  T +E  +++    +ET  +  ++AG  Y   T   I   Q A KAGA+  L+L PY 
Sbjct: 48  FSLTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIAYAQAAEKAGADGILLLPPY- 104

Query: 62  FQKKMTE---DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVK 117
               +TE   + +Y H  +V  ++ + VI+YN     N  ++ D+L +LA    N+ G K
Sbjct: 105 ----LTEAPQEGLYAHVEAVCKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFK 157

Query: 118 D 118
           D
Sbjct: 158 D 158

5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. Length = 289

>gnl|CDD|235141 PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase; Provisional

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 17/118 (14%)

Query: 8   TEEEKLKIISTLRQETKKT--IIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQK 64
           T +E  +++    + T     +IAG      T   I+  Q A +AGA+  L+L PY    
Sbjct: 58  TPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPY---- 111

Query: 65  KMTE---DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKD 118
            +TE   + +  H  +V  ++ + VI+YN     N  ++ DTL +LA    N+ G KD
Sbjct: 112 -LTEAPQEGLAAHVEAVCKSTDLGVIVYNR---DNAVLTADTLARLAERCPNLVGFKD 165

Length = 303

>gnl|CDD|188639 cd00952, CHBPH_aldolase, Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 19/202 (9%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EEK   ++T+ +     +    G    +TR TI  T+     GA+  ++  P +    
Sbjct: 59  TWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL--P 116

Query: 66  MTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNI-K 123
           +  D   + +  VA+  P + + IY N      D       +LA    +   K   +I  
Sbjct: 117 LDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLGDIGA 176

Query: 124 LANMANQTKD------LNFSVFAGSAGYLLSGLLVGCAGGINALSAVLG-GPICELYDLA 176
           L +     K       L    +A  A  L    +           A  G  P+  L D  
Sbjct: 177 LLSDLAAVKGRMRLLPLEDDYYA--AARLFPEEVTAFWSS----GAACGPAPVTALRDAV 230

Query: 177 KAGKWEEAMKLQHRLVKPDVTL 198
             G W +A  L  R+      L
Sbjct: 231 ATGDWTDARALTDRMRWAAEPL 252

Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. Length = 309

>gnl|CDD|132293 TIGR03249, KdgD, 5-dehydro-4-deoxyglucarate dehydratase

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 5   FKSTEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF 62
           F  T  E  +++       K    +  G    +T   I++ + A KAGA+  L+L PY  
Sbjct: 53  FSLTPAEYEQVVEIAVSTAKGKVPVYTGV-GGNTSDAIEIARLAEKAGADGYLLLPPYLI 111

Query: 63  QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD 118
             +  ++ +Y H  +V +++ + VI+Y      N  ++ DTL +LA    N+ G KD
Sbjct: 112 NGE--QEGLYAHVEAVCESTDLGVIVYQR---DNAVLNADTLERLADRCPNLVGFKD 163

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	100.0
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	100.0
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	100.0
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	100.0
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	100.0
PRK04147	293	N-acetylneuraminate lyase; Provisional	100.0
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	100.0
PRK03170	292	dihydrodipicolinate synthase; Provisional	100.0
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	100.0
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	100.0
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	100.0
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	100.0
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	100.0
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	100.0
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	100.0
PLN02417	280	dihydrodipicolinate synthase	100.0
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	99.86
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	99.65
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	99.48
PF06187	382	DUF993: Protein of unknown function (DUF993); Inte	99.37
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	99.17
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	98.62
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.43
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	97.69
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	97.58
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	97.44
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.44
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.23
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.09
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.04
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	96.95
PRK08227	264	autoinducer 2 aldolase; Validated	96.94
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	96.9
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	96.84
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	96.68
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	96.52
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.51
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	96.51
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	96.48
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	96.47
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.41
PRK07226	267	fructose-bisphosphate aldolase; Provisional	96.37
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.35
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	96.32
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	96.3
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	96.18
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	96.13
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	96.09
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	96.05
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	96.04
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	96.03
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	96.03
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	96.02
CHL00040	475	rbcL ribulose-1,5-bisphosphate carboxylase/oxygena	95.95
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	95.93
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	95.93
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	95.92
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	95.89
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	95.87
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.81
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	95.79
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.78
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	95.76
PRK09250	348	fructose-bisphosphate aldolase; Provisional	95.75
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.75
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	95.73
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	95.72
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	95.69
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	95.69
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	95.68
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	95.65
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	95.65
PLN02433	345	uroporphyrinogen decarboxylase	95.56
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	95.55
cd03307	326	Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al	95.53
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	95.51
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	95.51
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	95.48
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	95.46
PLN02591	250	tryptophan synthase	95.45
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	95.42
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	95.37
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	95.36
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	95.32
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	95.29
PRK06806	281	fructose-bisphosphate aldolase; Provisional	95.24
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	95.24
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	95.22
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.17
PRK04208	468	rbcL ribulose bisophosphate carboxylase; Reviewed	95.14
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.12
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	95.08
PRK08185	283	hypothetical protein; Provisional	94.98
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	94.97
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	94.87
PRK15063	428	isocitrate lyase; Provisional	94.84
PRK04302	223	triosephosphate isomerase; Provisional	94.78
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	94.77
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.77
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.76
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	94.73
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	94.61
cd08208	424	RLP_Photo Ribulose bisphosphate carboxylase like p	94.6
PLN02424	332	ketopantoate hydroxymethyltransferase	94.55
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	94.55
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	94.55
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	94.49
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	94.48
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	94.48
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	94.41
PRK07226	267	fructose-bisphosphate aldolase; Provisional	94.37
PRK13523	337	NADPH dehydrogenase NamA; Provisional	94.36
cd08212	450	RuBisCO_large_I Ribulose bisphosphate carboxylase	94.33
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	94.19
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	94.18
cd08206	414	RuBisCO_large_I_II_III Ribulose bisphosphate carbo	94.17
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	94.16
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	94.06
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	94.06
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	94.05
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	94.04
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	94.02
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	94.02
cd00717	335	URO-D Uroporphyrinogen decarboxylase (URO-D) is a	94.01
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	93.99
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	93.98
cd08213	412	RuBisCO_large_III Ribulose bisphosphate carboxylas	93.85
PLN02746	347	hydroxymethylglutaryl-CoA lyase	93.84
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	93.81
cd08209	391	RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent	93.72
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	93.7
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	93.69
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	93.59
PRK09490	1229	metH B12-dependent methionine synthase; Provisiona	93.56
PRK08227	264	autoinducer 2 aldolase; Validated	93.54
COG2159	293	Predicted metal-dependent hydrolase of the TIM-bar	93.54
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	93.54
PLN02746	347	hydroxymethylglutaryl-CoA lyase	93.5
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	93.5
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	93.49
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	93.48
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	93.42
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.4
PRK00115	346	hemE uroporphyrinogen decarboxylase; Validated	93.27
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	93.24
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	93.19
cd08148	366	RuBisCO_large Ribulose bisphosphate carboxylase la	93.15
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	93.06
TIGR03332	407	salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosp	93.05
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	93.03
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	93.02
KOG2335|consensus	358		92.97
PLN02489	335	homocysteine S-methyltransferase	92.96
PRK06252	339	methylcobalamin:coenzyme M methyltransferase; Vali	92.96
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.95
PRK09549	407	mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno	92.82
PRK06852	304	aldolase; Validated	92.63
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	92.55
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	92.5
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	92.48
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	92.47
cd01295	422	AdeC Adenine deaminase (AdeC) directly deaminates	92.44
TIGR01464	338	hemE uroporphyrinogen decarboxylase. This model re	92.41
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	92.39
cd03465	330	URO-D_like The URO-D _like protein superfamily inc	92.36
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	92.35
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	92.34
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	92.33
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	92.33
cd03309	321	CmuC_like CmuC_like. Proteins similar to the putat	92.26
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	92.2
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	92.18
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	92.16
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.07
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	92.06
PRK07709	285	fructose-bisphosphate aldolase; Provisional	92.02
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	91.99
TIGR02082	1178	metH 5-methyltetrahydrofolate--homocysteine methyl	91.95
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	91.92
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	91.91
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	91.89
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	91.87
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	91.85
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	91.84
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	91.84
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	91.83
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	91.78
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	91.73
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	91.67
PRK10605	362	N-ethylmaleimide reductase; Provisional	91.63
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	91.44
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	91.44
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	91.42
PF00016	309	RuBisCO_large: Ribulose bisphosphate carboxylase l	91.42
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	91.37
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	91.37
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	91.32
PRK09261	349	phospho-2-dehydro-3-deoxyheptonate aldolase; Valid	91.27
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	91.18
PRK00208	250	thiG thiazole synthase; Reviewed	91.18
COG4981	717	Enoyl reductase domain of yeast-type FAS1 [Lipid m	91.17
PF10113	505	Fibrillarin_2: Fibrillarin-like archaeal protein;	91.09
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	91.06
TIGR02634	302	xylF D-xylose ABC transporter, substrate-binding p	91.05
PRK12755	353	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	91.03
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	90.96
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	90.96
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	90.88
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	90.78
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	90.77
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	90.66
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	90.66
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	90.64
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	90.56
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	90.54
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	90.5
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	90.39
PRK14042	596	pyruvate carboxylase subunit B; Provisional	90.39
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	90.36
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	90.35
PF04909	273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	90.34
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	90.12
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	90.08
cd03308	378	CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro	90.06
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	90.05
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	90.02
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	89.96
PRK15408	336	autoinducer 2-binding protein lsrB; Provisional	89.93
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	89.88
PRK00208	250	thiG thiazole synthase; Reviewed	89.86
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	89.85
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	89.77
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	89.76
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	89.75
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	89.75
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	89.66
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	89.66
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	89.62
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	89.61
cd06322	267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	89.58
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.53
PRK09250	348	fructose-bisphosphate aldolase; Provisional	89.48
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	89.46
PRK00915	513	2-isopropylmalate synthase; Validated	89.39
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	89.39
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	89.37
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	89.34
cd00465	306	URO-D_CIMS_like The URO-D_CIMS_like protein superf	89.34
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	89.3
PRK07315	293	fructose-bisphosphate aldolase; Provisional	89.28
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	89.25
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	89.24
cd06302	298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	89.2
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	89.13
COG3684	306	LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr	89.13
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	89.12
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	88.96
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	88.94
PRK09389	488	(R)-citramalate synthase; Provisional	88.92
PRK12331	448	oxaloacetate decarboxylase; Provisional	88.9
PRK06852	304	aldolase; Validated	88.9
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	88.89
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	88.87
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	88.74
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	88.74
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	88.65
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	88.65
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	88.53
PRK04302	223	triosephosphate isomerase; Provisional	88.38
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	88.36
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	88.36
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	88.35
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	88.29
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	88.24
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	88.08
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	88.04
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	87.99
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	87.87
PRK12756	348	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	87.86
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	87.77
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	87.66
COG4018	505	Uncharacterized protein conserved in archaea [Func	87.66
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	87.61
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	87.45
PRK12928	290	lipoyl synthase; Provisional	87.42
PLN02591	250	tryptophan synthase	87.42
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	87.41
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.36
PTZ00413	398	lipoate synthase; Provisional	87.33
PLN02274	505	inosine-5'-monophosphate dehydrogenase	87.28
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	87.25
cd06309	273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	87.24
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	87.21
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	87.02
PRK07695	201	transcriptional regulator TenI; Provisional	87.02
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	86.97
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	86.95
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	86.91
cd06317	275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	86.87
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	86.74
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	86.72
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	86.67
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	86.66
PRK14041	467	oxaloacetate decarboxylase; Provisional	86.57
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	86.48
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	86.48
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	86.48
cd06313	272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	86.33
PRK05481	289	lipoyl synthase; Provisional	86.28
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	86.23
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	86.21
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	86.1
PF01208	343	URO-D: Uroporphyrinogen decarboxylase (URO-D); Int	86.01
PLN02979	366	glycolate oxidase	85.96
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	85.95
PLN02460	338	indole-3-glycerol-phosphate synthase	85.94
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	85.75
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	85.73
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	85.72
TIGR02637	302	RhaS rhamnose ABC transporter, rhamnose-binding pr	85.72
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	85.69
cd06315	280	PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi	85.68
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	85.61
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	85.5
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	85.49
TIGR01463	340	mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi	85.49
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	85.45
PRK06256	336	biotin synthase; Validated	85.44
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	85.43
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	85.43
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	85.32
PRK14024	241	phosphoribosyl isomerase A; Provisional	85.3
cd08211	439	RuBisCO_large_II Ribulose bisphosphate carboxylase	85.26
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	85.05
TIGR00587	274	nfo apurinic endonuclease (APN1). All proteins in	85.0
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	84.9
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	84.88
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	84.75
PLN02460	338	indole-3-glycerol-phosphate synthase	84.75
TIGR00486	249	YbgI_SA1388 dinuclear metal center protein, YbgI/S	84.64
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	84.55
PRK10799	247	metal-binding protein; Provisional	84.46
PRK08999	312	hypothetical protein; Provisional	84.36
cd06314	271	PBP1_tmGBP Periplasmic sugar-binding domain of The	84.29
PRK08645	612	bifunctional homocysteine S-methyltransferase/5,10	84.28
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	84.23
COG1856	275	Uncharacterized homolog of biotin synthetase [Func	84.12
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	84.09
PLN02424	332	ketopantoate hydroxymethyltransferase	84.08
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	84.07
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	83.94
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	83.9
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	83.89
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	83.86
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	83.82
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	83.77
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	83.74
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	83.74
PRK10355	330	xylF D-xylose transporter subunit XylF; Provisiona	83.71
cd00578	452	L-fuc_L-ara-isomerases L-fucose isomerase (FucIase	83.59
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	83.57
TIGR03884	74	sel_bind_Methan selenium-binding protein. This mod	83.57
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	83.49
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	83.47
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	83.44
PLN02428	349	lipoic acid synthase	83.27
PRK13475	443	ribulose bisphosphate carboxylase; Provisional	83.23
PRK09875	292	putative hydrolase; Provisional	83.18
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	83.16
TIGR00034	344	aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	83.13
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	83.11
TIGR02955	295	TMAO_TorT TMAO reductase system periplasmic protei	83.1
PLN03228	503	methylthioalkylmalate synthase; Provisional	83.09
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	83.06
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	82.99
PRK08185	283	hypothetical protein; Provisional	82.94
cd06316	294	PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi	82.88
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	82.84
TIGR01178	552	ade adenine deaminase. The family described by thi	82.82
PRK06801	286	hypothetical protein; Provisional	82.81
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	82.78
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	82.74
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	82.68
PRK10528	191	multifunctional acyl-CoA thioesterase I and protea	82.61
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	82.56
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	82.5
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	82.48
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	82.45
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	82.32
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	82.28
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	82.25
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	82.07
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	82.04
PRK14024	241	phosphoribosyl isomerase A; Provisional	81.82
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	81.77
PLN02826	409	dihydroorotate dehydrogenase	81.77
COG1609	333	PurR Transcriptional regulators [Transcription]	81.71
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	81.68
KOG0633|consensus	375		81.65
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	81.62
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	81.58
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	81.57
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	81.49
TIGR01927	307	menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe	81.48
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	81.47
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	81.4
COG1879	322	RbsB ABC-type sugar transport system, periplasmic	81.31
cd06324	305	PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b	81.31
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	81.14
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	81.13
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	80.98
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	80.96
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	80.95
PLN02321	632	2-isopropylmalate synthase	80.91
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	80.84
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	80.73
COG0327	250	Uncharacterized conserved protein [Function unknow	80.73
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	80.73
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	80.66
PRK10076	213	pyruvate formate lyase II activase; Provisional	80.6
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	80.58
TIGR03586	327	PseI pseudaminic acid synthase.	80.55
PRK09485	304	mmuM homocysteine methyltransferase; Provisional	80.34
cd03328	352	MR_like_3 Mandelate racemase (MR)-like subfamily o	80.32
cd01301	309	rDP_like renal dipeptidase (rDP), best studied in	80.2
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	80.19
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	80.12
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	80.04

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-53  Score=352.23  Aligned_cols=193  Identities=35%  Similarity=0.510  Sum_probs=186.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|++|++||||++++  ++++++||+.|+
T Consensus        49 GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~--~~gl~~hf~~ia  126 (299)
T COG0329          49 GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPS--QEGLYAHFKAIA  126 (299)
T ss_pred             ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC--hHHHHHHHHHHH
Confidence            8999999999999999999999  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC-CeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL-NFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~-~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++|+++||+|.+||.+++++++.+|+++|||+|+|++  |..++.+++. ..++ +|.+++|.|+++++.+..|++|
T Consensus       127 ~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~~~~-~~~~~~f~v~~G~d~~~~~~~~~G~~G  205 (299)
T COG0329         127 EAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEEIIA-ALGDRDFIVLSGDDELALPALLLGADG  205 (299)
T ss_pred             HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHHHHHH-hcCccCeeEEeCchHHHHHHHhCCCCe
Confidence            9999999999999999999999999999999999999999  9999998874 4455 7999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|+++|++|+++++||+++++||+++|+++|+++.|+.+.
T Consensus       206 ~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~~l~~~  246 (299)
T COG0329         206 VISVTANVAPELAVELYRAAKAGDIEEARELQDRLLPLIRL  246 (299)
T ss_pred             EEecccccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=100.00  E-value=7.2e-52  Score=343.32  Aligned_cols=193  Identities=30%  Similarity=0.430  Sum_probs=185.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++++|+++++++++|+++|+|++++.||+|++++  ++++++||+.|+
T Consensus        45 GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~--~~~l~~~f~~ia  122 (294)
T TIGR02313        45 GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPN--QEALYDHFAEVA  122 (294)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999988  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccC-CCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCC
Q psy9711          80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCA  155 (198)
Q Consensus        80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~  155 (198)
                      +++ ++||++||+|.+||++++++++.+|+ ++|||+|+|++  |..++.++++ ..+++|.||+|.|.++++++.+|++
T Consensus       123 ~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~Ga~  201 (294)
T TIGR02313       123 DAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESNKDFEHLNHLFL-EAGRDFLLFCGIELLCLPMLAIGAA  201 (294)
T ss_pred             HhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEEcchHHHHHHHHCCCC
Confidence            999 89999999999999999999999999 69999999999  8999888774 4567999999999999999999999


Q ss_pred             eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         156 GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       156 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      |++|+++|++|++++++|+++++||+++|+++|.++.++++.
T Consensus       202 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~~~~~  243 (294)
T TIGR02313       202 GSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLEANDA  243 (294)
T ss_pred             EEEecHHhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=100.00  E-value=3.3e-51  Score=338.30  Aligned_cols=193  Identities=25%  Similarity=0.419  Sum_probs=185.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++.|++++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        43 GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~--~~~i~~~~~~i~  120 (285)
T TIGR00674        43 GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPT--QEGLYQHFKAIA  120 (285)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||+.++++++.+|+++|||+|+|++  |..++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus       121 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~  199 (285)
T TIGR00674       121 EEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIKA-IAPDDFVVLSGDDALTLPMMALGGKGV  199 (285)
T ss_pred             hcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEECchHHHHHHHHcCCCEE
Confidence            9999999999999999999999999999999999999999  8999888874 456799999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +++++|++|++++++|+++++||+++|+++|+++.|+++.
T Consensus       200 i~~~~~~~P~~~~~l~~a~~~gd~~~A~~lq~~l~~l~~~  239 (285)
T TIGR00674       200 ISVTANVAPKLMKEMVNNALEGDFAEAREIHQKLMPLHKA  239 (285)
T ss_pred             EehHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=100.00  E-value=1.1e-50  Score=335.68  Aligned_cols=193  Identities=23%  Similarity=0.359  Sum_probs=185.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  ++|||+|+++.+++++++++++|+++|||+++++||+|++++  ++++++||++|+
T Consensus        46 GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~--~~~i~~~~~~v~  123 (288)
T cd00954          46 GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFS--FEEIKDYYREII  123 (288)
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999987  999999999999


Q ss_pred             ccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++ ++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.+|+|.|.++.+++..|++|
T Consensus       124 ~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~~~~G~~G  202 (288)
T cd00954         124 AAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDLYDLERIRA-ASPEDKLVLNGFDEMLLSALALGADG  202 (288)
T ss_pred             HhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hCCCCcEEEEechHHHHHHHHcCCCE
Confidence            999 8999999999999999999999999999999999999  8888888774 45569999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++++++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       203 ~i~~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~~~~~~~~  243 (288)
T cd00954         203 AIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVINDVITV  243 (288)
T ss_pred             EEeChhhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=100.00  E-value=9.4e-51  Score=336.07  Aligned_cols=192  Identities=22%  Similarity=0.357  Sum_probs=183.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++.+++++++++++|+++|+|++++.||+|++++  ++++++||++|+
T Consensus        46 GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~--~~~i~~yf~~v~  123 (290)
T TIGR00683        46 GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTII  123 (290)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC--HHHHHHHHHHHH
Confidence            9999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++ ++|+++||+|.+||++++++++.+|+++|||+|||++  |+.++.++++ . .++|.|++|.|.++++.+.+|++|
T Consensus       124 ~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~G~~G  201 (290)
T TIGR00683       124 AETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKK-A-YPNHLIWAGFDEMMLPAASLGVDG  201 (290)
T ss_pred             hhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-h-CCCCEEEECchHHHHHHHHCCCCE
Confidence            988 7999999999999999999999999999999999999  8999888773 3 358999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++++++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       202 ~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~~~~~  242 (290)
T TIGR00683       202 AIGSTFNVNGVRARQIFELTKAGKLQEALEIQHVTNDLIEG  242 (290)
T ss_pred             EEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998764

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=100.00  E-value=1e-50  Score=336.57  Aligned_cols=192  Identities=26%  Similarity=0.382  Sum_probs=184.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+++.+++++++++++|+++|||+++++||+|++++  ++++++||++|+
T Consensus        49 GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~--~~~l~~~f~~va  126 (293)
T PRK04147         49 GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFS--FEEICDYYREII  126 (293)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |+.++.++++ . .++|.+|+|.|.++.+++..|++|+
T Consensus       127 ~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~G~~G~  204 (293)
T PRK04147        127 DSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDLYQLERIRK-A-FPDKLIYNGFDEMFASGLLAGADGA  204 (293)
T ss_pred             HhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-h-CCCCEEEEeehHHHHHHHHcCCCEE
Confidence            9999999999999999999999999999999999999999  9988888773 3 3578999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       205 is~~~n~~p~~~~~l~~~~~~gd~~~a~~l~~~~~~~~~~  244 (293)
T PRK04147        205 IGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDVIDL  244 (293)
T ss_pred             EechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=100.00  E-value=1.2e-50  Score=335.53  Aligned_cols=193  Identities=36%  Similarity=0.598  Sum_probs=184.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++.|++++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        46 GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s--~~~l~~y~~~ia  123 (289)
T PF00701_consen   46 GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPS--QEELIDYFRAIA  123 (289)
T ss_dssp             TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCC--HHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccch--hhHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||.+++++++.+|+++|||+|+|++  |+.++.++++ ..+++|.+++|.|.++..++..|++|+
T Consensus       124 ~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~~~~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~  202 (289)
T PF00701_consen  124 DATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSSGDLERLIQLLR-AVGPDFSVFCGDDELLLPALAAGADGF  202 (289)
T ss_dssp             HHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESSSBHHHHHHHHH-HSSTTSEEEESSGGGHHHHHHTTSSEE
T ss_pred             hhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCchhHHHHHHHhh-hcccCeeeeccccccccccccccCCEE
Confidence            9999999999999999999999999999999999999998  8888888774 567899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|++++++++.
T Consensus       203 is~~~n~~P~~~~~i~~~~~~Gd~~~A~~l~~~l~~~~~~  242 (289)
T PF00701_consen  203 ISGLANVFPELIVEIYDAFQAGDWEEARELQQRLLPLREA  242 (289)
T ss_dssp             EESGGGTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEcccccChHHHHHHHHHHHcCcHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999999999999999998864

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=100.00  E-value=8.7e-50  Score=330.90  Aligned_cols=193  Identities=32%  Similarity=0.511  Sum_probs=185.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++.+++++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        46 GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~--~~~i~~~~~~ia  123 (292)
T PRK03170         46 GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPT--QEGLYQHFKAIA  123 (292)
T ss_pred             CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++|+++||+|..+|..++++++.+|+++|||+|+|++  |..++.++++ ..+++|.+|.|.|.++++.+..|++|+
T Consensus       124 ~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~  202 (292)
T PRK03170        124 EATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGDLERVSELIE-LVPDDFAVYSGDDALALPFLALGGVGV  202 (292)
T ss_pred             hcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHHHHHHHHH-hCCCCeEEEECChHhHHHHHHcCCCEE
Confidence            9999999999999999999999999999999999999998  8999888874 456789999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|++++++|+++++||+++|+++|++++++++.
T Consensus       203 is~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~l~~~~~~  242 (292)
T PRK03170        203 ISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLHKA  242 (292)
T ss_pred             EEhHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998754

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=100.00  E-value=1.1e-49  Score=328.52  Aligned_cols=193  Identities=35%  Similarity=0.540  Sum_probs=186.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  ++||++|+++.+++++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        42 GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~--~~~~~~~~~~ia  119 (281)
T cd00408          42 GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPS--QEGIVAHFKAVA  119 (281)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999987  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++|+++||+|.+||+.++++++.+|+++|||+|+|++  |..++.++++ ..+++|.+|+|.|.++.+.+..|++|+
T Consensus       120 ~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~  198 (281)
T cd00408         120 DASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIA-LLGPDFAVLSGDDDLLLPALALGADGA  198 (281)
T ss_pred             hcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEEcchHHHHHHHHcCCCEE
Confidence            9999999999999999999999999999999999999999  8999988874 456899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|++++++|+++++||+++|+++|+++.++++.
T Consensus       199 i~~~~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  238 (281)
T cd00408         199 ISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEA  238 (281)
T ss_pred             EehHHhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=100.00  E-value=7.1e-50  Score=333.38  Aligned_cols=193  Identities=19%  Similarity=0.220  Sum_probs=179.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      -||+++||.+||+++++.+++++  |+|||+||++.+|+++++++++|+++|||++|++||+|++++  ++++++||++|
T Consensus        52 tGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~--~~~l~~yf~~v  129 (309)
T cd00952          52 FGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLD--VDTAVQFYRDV  129 (309)
T ss_pred             cccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCC--HHHHHHHHHHH
Confidence            39999999999999999999998  899999999999999999999999999999999999999988  99999999999


Q ss_pred             HccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCC--
Q psy9711          79 ADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGC--  154 (198)
Q Consensus        79 ~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~--  154 (198)
                      ++++ ++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|.|.++ ..+..|+  
T Consensus       130 a~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdssd~~~~~~~i~-~~~~~~~v~~g~d~~l-~~~~~~~~~  207 (309)
T cd00952         130 AEAVPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLGDIGALLSDLA-AVKGRMRLLPLEDDYY-AAARLFPEE  207 (309)
T ss_pred             HHhCCCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecCChHHHHHHHH-HcCCCeEEeecchhHH-HHHHhcCcc
Confidence            9999 6999999999999999999999999999999999999 9988887774 4567999999999965 5554454  


Q ss_pred             -CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         155 -AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       155 -~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                       +|++++++|++|++++++|+++++||+++|+++|+++.++++.
T Consensus       208 ~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~lq~~~~~~~~~  251 (309)
T cd00952         208 VTAFWSSGAACGPAPVTALRDAVATGDWTDARALTDRMRWAAEP  251 (309)
T ss_pred             CccEEEeccccCcHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             6999999999999999999999999999999999999988764

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=100.00  E-value=5.3e-49  Score=325.04  Aligned_cols=193  Identities=31%  Similarity=0.485  Sum_probs=185.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  ++||++||++.+++++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        45 GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~--~~~l~~~~~~ia  122 (284)
T cd00950          45 GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPS--QEGLYAHFKAIA  122 (284)
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.++|+.+|++++.+|+++|||+|+|++  |..++.++++ ..+++|.+|+|.|.++.+.+..|++|+
T Consensus       123 ~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~  201 (284)
T cd00950         123 EATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLDRVSELIA-LCPDDFAVLSGDDALTLPFLALGGVGV  201 (284)
T ss_pred             hcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHH-hCCCCeEEEeCChHhHHHHHHCCCCEE
Confidence            9999999999999999999999999999999999999998  8888888774 457899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       202 ~s~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~~~~~  241 (284)
T cd00950         202 ISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLIKA  241 (284)
T ss_pred             EehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=100.00  E-value=2.2e-47  Score=316.94  Aligned_cols=189  Identities=21%  Similarity=0.298  Sum_probs=177.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++ +|+++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        50 GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s--~~~i~~~f~~v~  126 (296)
T TIGR03249        50 GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLINGE--QEGLYAHVEAVC  126 (296)
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  8999999996 7999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC---hhhHHHHhhcC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLLVG  153 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~G  153 (198)
                      +++++||++||   ++|.+++++++.+|++ +|||+|||++  |+.++.++++ ..+++|.||+|.   |..+++.+..|
T Consensus       127 ~a~~~pvilYn---~~g~~l~~~~~~~La~~~~nvvgiKds~~d~~~~~~~~~-~~~~~~~v~~G~~~~d~~~~~~~~~G  202 (296)
T TIGR03249       127 ESTDLGVIVYQ---RDNAVLNADTLERLADRCPNLVGFKDGIGDMEQMIEITQ-RLGDRLGYLGGMPTAEVTAPAYLPLG  202 (296)
T ss_pred             hccCCCEEEEe---CCCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEeCCCcchhhHHHHHhCC
Confidence            99999999999   5789999999999996 9999999999  9999988874 456799999996   66788999999


Q ss_pred             CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHH-Hhhchhhc
Q psy9711         154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQH-RLVKPDVT  197 (198)
Q Consensus       154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~-~~~~l~~~  197 (198)
                      ++|++|+++|++|++++++|+++++||+++|+++|+ ++.|+++.
T Consensus       203 a~G~is~~~n~~P~~~~~~~~~~~~gd~~~a~~l~~~~~~~l~~~  247 (296)
T TIGR03249       203 VTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKEFILPINEI  247 (296)
T ss_pred             CCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999977 58887653

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=100.00  E-value=8e-47  Score=312.62  Aligned_cols=190  Identities=24%  Similarity=0.335  Sum_probs=176.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      .||+++||.+||+++++.+++++  |+|||+|++. +|+++++++++|+++|+|+++++||+|++++  ++++++||++|
T Consensus        44 tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~--~~~i~~~f~~v  120 (289)
T cd00951          44 TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAP--QEGLYAHVEAV  120 (289)
T ss_pred             CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHH
Confidence            39999999999999999999998  8999999997 9999999999999999999999999999988  99999999999


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC---hhhHHHHhhc
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLLV  152 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~  152 (198)
                      ++++++||++||.   +|.+++++++.+|++ +|||+|+|++  |..++.++++ ..+++|.||+|.   |.++.+.+.+
T Consensus       121 ~~~~~~pi~lYn~---~g~~l~~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~-~~~~~~~v~~G~~~~d~~~~~~l~~  196 (289)
T cd00951         121 CKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFKDGVGDIELMRRIVA-KLGDRLLYLGGLPTAEVFALAYLAM  196 (289)
T ss_pred             HhcCCCCEEEEeC---CCCCCCHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEeCCCcchHhHHHHHHC
Confidence            9999999999994   678999999999997 9999999999  9999888874 456789999996   6778899999


Q ss_pred             CCCeEEecccccchHHHHHHHHHHHcCCHHHHHHH-HHHhhchhhc
Q psy9711         153 GCAGGINALSAVLGGPICELYDLAKAGKWEEAMKL-QHRLVKPDVT  197 (198)
Q Consensus       153 G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l-~~~~~~l~~~  197 (198)
                      |++|++|+++|++|++++++|+++++||+++|+++ |+++.|+++.
T Consensus       197 Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~~~~~~~~~~~~~  242 (289)
T cd00951         197 GVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFFLPYVDI  242 (289)
T ss_pred             CCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997 5668787653

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=100.00  E-value=1.7e-46  Score=309.21  Aligned_cols=186  Identities=26%  Similarity=0.349  Sum_probs=174.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~   80 (198)
                      ||+++||.+||+++++.+++.++ +|++||++.+++++++++++|+++|||+++++||+|++ ++  ++++++||++|++
T Consensus        44 GE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~--~~~i~~yf~~v~~  120 (279)
T cd00953          44 GLGPSLSFQEKLELLKAYSDITD-KVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIP--EEWLIKYFTDISS  120 (279)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcC-CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCC--HHHHHHHHHHHHh
Confidence            99999999999999999999883 38999999999999999999999999999999999988 46  9999999999999


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                        ++|+++||+|.+||++++++++.+|++ +|||+|||++  |..++.++.+ . .++|.||+|.|.++++++..|++|+
T Consensus       121 --~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~s~~d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~Ga~G~  196 (279)
T cd00953         121 --PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKR-L-VPDFKVYSGPDSLIFSALRSGLDGS  196 (279)
T ss_pred             --cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEeCccCHHHHHHHHH-h-CCCeEEEEccHHHHHHHHHcCCCeE
Confidence              899999999999999999999999995 7999999999  8999888763 3 3589999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +++++|++|++++++|++++   +++|+++|+++.++++.
T Consensus       197 i~~~~n~~P~~~~~l~~a~~---~~~a~~~q~~~~~l~~~  233 (279)
T cd00953         197 VAAASNYLPEVFVKIKDHVA---IEDAFKLQFLINEVLDA  233 (279)
T ss_pred             EechhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            99999999999999999997   89999999999998763

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=100.00  E-value=2.5e-46  Score=311.51  Aligned_cols=188  Identities=23%  Similarity=0.310  Sum_probs=175.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+++ +++++++++++|+++|+|++++.||+|++++  ++++++||++|+
T Consensus        52 GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~--~~~i~~~f~~va  128 (303)
T PRK03620         52 GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEAP--QEGLAAHVEAVC  128 (303)
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  8999999997 9999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecCh---hhHHHHhhcC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA---GYLLSGLLVG  153 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d---~~~~~~l~~G  153 (198)
                      +++++||++||.   +|.+++++++.+|+ ++|||+|||++  |..++.++++ ..+++|.||+|.|   ..+.+++..|
T Consensus       129 ~~~~lpi~lYn~---~g~~l~~~~l~~L~~~~pni~giK~s~~d~~~~~~~~~-~~~~~f~vl~G~d~~e~~~~~~~~~G  204 (303)
T PRK03620        129 KSTDLGVIVYNR---DNAVLTADTLARLAERCPNLVGFKDGVGDIELMQRIVR-ALGDRLLYLGGLPTAEVFAAAYLALG  204 (303)
T ss_pred             HhCCCCEEEEcC---CCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEeCCCcchhhHHHHHhCC
Confidence            999999999995   46899999999999 89999999999  8999988874 4568999999974   5667888999


Q ss_pred             CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHH-Hhhchhh
Q psy9711         154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQH-RLVKPDV  196 (198)
Q Consensus       154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~-~~~~l~~  196 (198)
                      ++|++|+++|++|++++++|+++++||+++|+++|+ .+.|+++
T Consensus       205 ~~G~is~~an~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~~l~~  248 (303)
T PRK03620        205 VPTYSSAVFNFVPEIALAFYRALRAGDHATVDRLLDDFFLPYVA  248 (303)
T ss_pred             CCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999965 5788765

>PLN02417 dihydrodipicolinate synthase

Probab=100.00  E-value=1.4e-46  Score=309.77  Aligned_cols=181  Identities=25%  Similarity=0.333  Sum_probs=169.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++++|+++++++++|+++|+|++++.||+|++++  ++++++||++|+
T Consensus        46 GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~--~~~i~~~f~~va  123 (280)
T PLN02417         46 GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS--QEGLIKHFETVL  123 (280)
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC--HHHHHHHHHHHH
Confidence            9999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHH-hhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSG-LLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G  156 (198)
                      +++  |+++||+|.+||++++++++.+|+++|||+|||++  | .++.+.+    +++|.||+|.|.+++++ +..|++|
T Consensus       124 ~~~--pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKdss~~-~~~~~~~----~~~~~v~~G~d~~~~~~~l~~Ga~G  196 (280)
T PLN02417        124 DMG--PTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKECTGN-DRVKQYT----EKGILLWSGNDDECHDARWDYGADG  196 (280)
T ss_pred             hhC--CEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEeCCCc-HHHHHHh----cCCeEEEEcccHHhhHHHHhCCCCE
Confidence            976  99999999999999999999999999999999998  8 7766533    36899999999999898 8999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|+++|++|+.++++|+++++      +++|+++.|+++.
T Consensus       197 ~is~~~n~~P~~~~~l~~a~~~------~~l~~~l~~l~~~  231 (280)
T PLN02417        197 VISVTSNLVPGLMHKLMFAGKN------KELNDKLLPLMDW  231 (280)
T ss_pred             EEecHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            9999999999999999999854      7888988888763

>cd00945 Aldolase_Class_I Class I aldolases

Probab=99.86  E-value=1.3e-20  Score=147.00  Aligned_cols=143  Identities=13%  Similarity=0.100  Sum_probs=119.4

Q ss_pred             HHHHHHHHhc---CCeEEEeCCCCc----HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CC
Q psy9711          14 KIISTLRQET---KKTIIAGTYCES----TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PI   84 (198)
Q Consensus        14 ~l~~~~~~~~---~~pvi~gv~~~~----~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~   84 (198)
                      ++++.+++..   ++|+++|+++.+    ++++++++++|+++|+|++++.+|+|+.++.+++++.+||+++++++  ++
T Consensus        35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  114 (201)
T cd00945          35 GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGL  114 (201)
T ss_pred             HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCc
Confidence            5677777766   499999999999    99999999999999999999999999877534899999999999995  89


Q ss_pred             CEEEEeCCCCcccccCHHHHHHH---HcCCCEEEEeeC-C-------HHHHHHHHhhcCC--CCeEEEecCh--hhHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKL---AHHENIRGVKDT-D-------NIKLANMANQTKD--LNFSVFAGSA--GYLLSG  149 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L---~~~p~i~giK~s-d-------~~~~~~~~~~~~~--~~~~v~~G~d--~~~~~~  149 (198)
                      |+++||+|..+   ++++.+.++   ++.+++.++|++ .       ...+.++++ ..+  -+|.++.|.+  ..+.++
T Consensus       115 pv~iy~~p~~~---~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~-~~~~~~~v~~~gg~~~~~~~~~~  190 (201)
T cd00945         115 PLKVILETRGL---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKE-AVGGRVGVKAAGGIKTLEDALAA  190 (201)
T ss_pred             eEEEEEECCCC---CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHH-hcccCCcEEEECCCCCHHHHHHH
Confidence            99999999876   677777765   457999999998 3       466666653 332  2677888888  778899


Q ss_pred             hhcCCCeEEec
Q psy9711         150 LLVGCAGGINA  160 (198)
Q Consensus       150 l~~G~~G~is~  160 (198)
                      +..|++|++.+
T Consensus       191 ~~~Ga~g~~~g  201 (201)
T cd00945         191 IEAGADGIGTS  201 (201)
T ss_pred             HHhccceeecC
Confidence            99999999864

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=99.65  E-value=4.1e-16  Score=132.87  Aligned_cols=141  Identities=16%  Similarity=0.139  Sum_probs=115.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH-----
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL-----   70 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~-----   70 (198)
                      +||+..++.+||.++++.+++.+     +.+++++..+.+++++++++++|+++|+|++|+.+|+|...+  .+.     
T Consensus       169 ~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~--~~~l~~~~  246 (367)
T cd08205         169 LADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLVGLDA--LRALAEDP  246 (367)
T ss_pred             ccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccccccH--HHHHHhcC
Confidence            58999999999999999999877     445544444446799999999999999999999999998544  443     


Q ss_pred             ---HHHHHHH-------------------HHccCCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC-------
Q psy9711          71 ---IYEHFIS-------------------VADNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT-------  119 (198)
Q Consensus        71 ---i~~y~~~-------------------i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s-------  119 (198)
                         +..|+..                   +++.++.|+++||+|. +++.++++.+.++++  .+++.++|.+       
T Consensus       247 ~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~-gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG  325 (367)
T cd08205         247 DLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPGPG-GRFPFSREECLAIARACRRPLGGIKPALPVPSGG  325 (367)
T ss_pred             CCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCCCc-cCcCCCHHHHHHHHHHHhCccccCCCceeeccCC
Confidence               4444555                   8888999999999997 589999999999996  6999999996       


Q ss_pred             -CHHHHHHHHhhcCCCCeEEEecChhh
Q psy9711         120 -DNIKLANMANQTKDLNFSVFAGSAGY  145 (198)
Q Consensus       120 -d~~~~~~~~~~~~~~~~~v~~G~d~~  145 (198)
                       ++.++.++++ ..++++.++.|.+-+
T Consensus       326 ~~~~~v~~l~~-~~G~dv~~~~GGgi~  351 (367)
T cd08205         326 MHPGRVPELYR-DYGPDVILLAGGGIL  351 (367)
T ss_pred             CCHHHHHHHHH-HhCCcEEEEcCchhc
Confidence             4577888874 567899999887753

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=99.48  E-value=3.3e-13  Score=114.76  Aligned_cols=140  Identities=16%  Similarity=0.137  Sum_probs=117.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-----CCCCCHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-----QKKMTED   69 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-----~~~~~~~   69 (198)
                      +||...++.+||.+.+..+++.+      ++++++++++. +.+.+++++.|+++|++++|+.++.|.     ...  ++
T Consensus       164 l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~--~~  240 (364)
T cd08210         164 LADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELA--ED  240 (364)
T ss_pred             ccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHH--hc
Confidence            47899999999999999888887      68899999986 669999999999999999999999886     333  33


Q ss_pred             HH----HHH-------------------HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC-----
Q psy9711          70 LI----YEH-------------------FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT-----  119 (198)
Q Consensus        70 ~i----~~y-------------------~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s-----  119 (198)
                      ..    ..|                   |..+++.++.|+++||+|. .++.++++.+.++++  .+++.++|.+     
T Consensus       241 ~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~-g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~s  319 (364)
T cd08210         241 FDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYG-GRFGFSREECQAIADACRRPMGGLKPILPAPG  319 (364)
T ss_pred             CCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCc-CCccCCHHHHHHHHHHhcCCccccCCCcCcCC
Confidence            33    344                   8999999999999999996 589999999999996  6899999996     


Q ss_pred             ---CHHHHHHHHhhcCCCCeEEEecChhh
Q psy9711         120 ---DNIKLANMANQTKDLNFSVFAGSAGY  145 (198)
Q Consensus       120 ---d~~~~~~~~~~~~~~~~~v~~G~d~~  145 (198)
                         ++.++.++++ ..++++.++.|.+-+
T Consensus       320 gG~~~~~v~~l~~-~~G~Dvil~aGGgi~  347 (364)
T cd08210         320 GGMSVERAPEMVE-LYGPDVMLLIGGSLL  347 (364)
T ss_pred             CCcCHHHHHHHHH-HcCCcEEEEcccccc
Confidence               4577888874 567889888887643

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=99.37  E-value=1.6e-11  Score=101.07  Aligned_cols=190  Identities=14%  Similarity=0.143  Sum_probs=129.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEEEeCCCCc--------HHHH----HHHHHHHHhcCCCEEEEcCCCCcCCCCCH
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTIIAGTYCES--------TRAT----IDLTQKAAKAGANAALILCPYYFQKKMTE   68 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~--------~~~~----i~~a~~a~~~Gad~v~~~~P~y~~~~~~~   68 (198)
                      +.-|+...-+++++...+++   +..|.+|+|+..        .++.    .++....++.|...+++.+-...+...++
T Consensus        84 GMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p  163 (382)
T PF06187_consen   84 GMGLDWAAARELIRRSAAEARAVGARIACGAGTDQLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARSP  163 (382)
T ss_dssp             TTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--TTS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--SH
T ss_pred             cCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCCH
Confidence            34578889999999999998   667888998443        2332    46777788999999888876665422359


Q ss_pred             HHHHHHHHHHHccCCCCEEEEeC-----CCCccc------ccCHHHHHHHH-cC-CCEEEEeeC--CHHHHHHHHhhcCC
Q psy9711          69 DLIYEHFISVADNSPIPVIIYNN-----TFVTNI------DISVDTLVKLA-HH-ENIRGVKDT--DNIKLANMANQTKD  133 (198)
Q Consensus        69 ~~i~~y~~~i~~~~~~pi~lYn~-----P~~tg~------~l~~~~l~~L~-~~-p~i~giK~s--d~~~~~~~~~~~~~  133 (198)
                      ++..+-|..|.++++-|||++..     |...|+      +-..+++.+|. ++ +.|-|||.|  |..+-..++ +..+
T Consensus       164 ~DY~~VY~~lL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~lI~~~~~kVdGIKiSLLD~~~Ei~lR-rrLP  242 (382)
T PF06187_consen  164 DDYLRVYDRLLSQADEPVILHWLGDMFDPALAGYWGSADLDAAMDTVLELIAAHADKVDGIKISLLDAEKEIALR-RRLP  242 (382)
T ss_dssp             HHHHHHHHHHHHH-SS-EEEEEE-TTT-GGGTTTTS-SSHHHHHHHHHHHHHHTGGGEEEEEEES--HHHHHHHH-TS--
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecccccCcccccccCCCcHHHHHHHHHHHHHhChhhcCeeEecccCcHHHHHHH-HhCC
Confidence            99999999999999999999985     666666      23467888887 45 699999999  888777776 4578


Q ss_pred             CCeEEEecChhhHHHHhhcC-----CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711         134 LNFSVFAGSAGYLLSGLLVG-----CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV  196 (198)
Q Consensus       134 ~~~~v~~G~d~~~~~~l~~G-----~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~  196 (198)
                      +++++|+|+|..+ +.+..|     .+.....+..+.|... .-.+++.+||.++.+++.+...||.+
T Consensus       243 ~gVr~YTGDDFnY-peLI~GD~~g~S~ALLGIFdaiAPaAs-aAl~~Ld~gd~~~f~~il~pTvpLsR  308 (382)
T PF06187_consen  243 EGVRMYTGDDFNY-PELIAGDGQGHSHALLGIFDAIAPAAS-AALAALDAGDTAGFRAILDPTVPLSR  308 (382)
T ss_dssp             TT-EEEE--TTTH-HHHHH--SS---EEEESHHHHTHHHHH-HHHHHHHTT-HHHHHHHHTTHHHHHH
T ss_pred             ccceeecCCCcCc-HHHhcCCCCCccHHHhhcchhhchHHH-HHHHHHhCCCHHHHHHHhccchHhHH
Confidence            9999999999876 446667     6777777777888776 45577888999999998877776644

; PDB: 4DNH_A.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=99.17  E-value=4.7e-10  Score=90.85  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc-C---CeEEEe-----CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET-K---KTIIAG-----TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI   71 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~-~---~pvi~g-----v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i   71 (198)
                      +||...+|.+|+.+.++.++++. +   ++|+++     ++..++++++++++.++++|||++++.+|.    +  .   
T Consensus       115 ~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~----~--~---  185 (243)
T cd00377         115 HGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK----D--P---  185 (243)
T ss_pred             CCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC----C--H---
Confidence            47889999999999999999987 4   788999     665789999999999999999999998886    3  4   


Q ss_pred             HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                       ++++.++++.++|+++|+.|...  .++++.+.+|
T Consensus       186 -~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l  218 (243)
T cd00377         186 -EEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL  218 (243)
T ss_pred             -HHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC
Confidence             78888999999999999988532  5788888887

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=98.62  E-value=8.6e-07  Score=73.34  Aligned_cols=98  Identities=18%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc---CCeEEEe----CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET---KKTIIAG----TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH   74 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~---~~pvi~g----v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y   74 (198)
                      ||...++.+|+.+.++.++++.   +++|++.    +...++++++++++.++++|||++++.   +...+  .+++.++
T Consensus       127 ~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~---~~~~~--~~ei~~~  201 (285)
T TIGR02320       127 VAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH---SRKKD--PDEILEF  201 (285)
T ss_pred             CcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec---CCCCC--HHHHHHH
Confidence            4667899999999999999984   7899999    555679999999999999999999996   22244  9999999


Q ss_pred             HHHHHccC-CCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          75 FISVADNS-PIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        75 ~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      ++.+.... ++|+++ + |..+ ..++.+.+.+|
T Consensus       202 ~~~~~~~~p~~pl~~-~-~~~~-~~~~~~eL~~l  232 (285)
T TIGR02320       202 ARRFRNHYPRTPLVI-V-PTSY-YTTPTDEFRDA  232 (285)
T ss_pred             HHHhhhhCCCCCEEE-e-cCCC-CCCCHHHHHHc
Confidence            99986333 578864 2 4222 23466666655

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.43  E-value=4.3e-05  Score=64.74  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=103.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE---cCCCCcCC-CCCH-HHHHHHHHHHHc
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALI---LCPYYFQK-KMTE-DLIYEHFISVAD   80 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~---~~P~y~~~-~~~~-~~i~~y~~~i~~   80 (198)
                      ....+++.+.++.+.+..++||+++++..+.++..+.++.++++|+|++.+   .||.-... ..+. +.+.+..+.|.+
T Consensus        83 n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~  162 (334)
T PRK07565         83 YVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKS  162 (334)
T ss_pred             CcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHh
Confidence            356788999888776655899999999999999999999999999999999   45542211 1112 336677788888


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--------CHH--------------------HHHHHHhhcC
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--------DNI--------------------KLANMANQTK  132 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~--------------------~~~~~~~~~~  132 (198)
                      .+++||++.-.|..+    +...+.+.++--++.||-..        |..                    +....+++..
T Consensus       163 ~~~iPV~vKl~p~~~----~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~  238 (334)
T PRK07565        163 AVSIPVAVKLSPYFS----NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV  238 (334)
T ss_pred             ccCCcEEEEeCCCch----hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc
Confidence            889999999877432    23334443322223333221        211                    1111111212


Q ss_pred             CCCeEEE-ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         133 DLNFSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       133 ~~~~~v~-~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                        ++.|+ +| -.  ......+.+|++++..+.+.+.  |+.+.++.+.+
T Consensus       239 --~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L  286 (334)
T PRK07565        239 --GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGL  286 (334)
T ss_pred             --CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence              34443 22 22  2356778899999998888765  66655555443

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=97.69  E-value=0.015  Score=48.38  Aligned_cols=161  Identities=17%  Similarity=0.177  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE--cCCCCcCC----CCCHHHHHHHHHHHHcc
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALI--LCPYYFQK----KMTEDLIYEHFISVADN   81 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~~----~~~~~~i~~y~~~i~~~   81 (198)
                      ..++..+-++...+..+.|+++.+...+.++-.+.++.++++|+|++-+  ..|.....    ..+++.+.+..+.+-+.
T Consensus        73 g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~  152 (296)
T cd04740          73 GVEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA  152 (296)
T ss_pred             CHHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc
Confidence            3455555444443323789999999999999999999999999999977  35654321    12477788888999888


Q ss_pred             CCCCEEEEeCCCCcccccCHHHHHH-HHcCCCEEEEee-------------------------C---C----HHHHHHHH
Q psy9711          82 SPIPVIIYNNTFVTNIDISVDTLVK-LAHHENIRGVKD-------------------------T---D----NIKLANMA  128 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~~l~~-L~~~p~i~giK~-------------------------s---d----~~~~~~~~  128 (198)
                      +++||++=-.|..+    ....+.+ +.+. .+.++..                         +   .    +..+.++.
T Consensus       153 ~~~Pv~vKl~~~~~----~~~~~a~~~~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~  227 (296)
T cd04740         153 TDVPVIVKLTPNVT----DIVEIARAAEEA-GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY  227 (296)
T ss_pred             cCCCEEEEeCCCch----hHHHHHHHHHHc-CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH
Confidence            89999985444321    1222333 3332 1222211                         0   0    12223332


Q ss_pred             hhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecccccc-hHHHHHHHHHH
Q psy9711         129 NQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAVL-GGPICELYDLA  176 (198)
Q Consensus       129 ~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~~-P~~~~~l~~~~  176 (198)
                       +..  ++.|+  .|..  ......+..|++++..+.+.+. |..+.++.+-+
T Consensus       228 -~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l  277 (296)
T cd04740         228 -KAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGL  277 (296)
T ss_pred             -Hhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHH
Confidence             222  23333  3322  3566778899999998888665 77666655433

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=97.58  E-value=0.019  Score=47.85  Aligned_cols=165  Identities=15%  Similarity=0.151  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC-CCEEEEc--CCCC----cCCCCCHHHHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG-ANAALIL--CPYY----FQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G-ad~v~~~--~P~y----~~~~~~~~~i~~y~~~i~   79 (198)
                      ...++..+-+....+..+.|+++.+++.+.++-.+.++.++++| +|++-+-  .|..    .....+++.+.+..+.|-
T Consensus        74 ~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr  153 (301)
T PRK07259         74 PGVDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK  153 (301)
T ss_pred             cCHHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence            33445444444333223789999999999999999999999999 9999772  3321    111124788888889998


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHH-HHHcC--CCEE------EEee----------------C-------CHHHHHHH
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLV-KLAHH--ENIR------GVKD----------------T-------DNIKLANM  127 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~-~L~~~--p~i~------giK~----------------s-------d~~~~~~~  127 (198)
                      +.+++||++==.|..+    ....+. .+.+.  ..|+      |.+.                +       ....+.++
T Consensus       154 ~~~~~pv~vKl~~~~~----~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i  229 (301)
T PRK07259        154 EVVKVPVIVKLTPNVT----DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQV  229 (301)
T ss_pred             HhcCCCEEEEcCCCch----hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHH
Confidence            8889999985554321    222233 33332  2232      2110                0       11223333


Q ss_pred             HhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccc-hHHHHHHHHHH
Q psy9711         128 ANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVL-GGPICELYDLA  176 (198)
Q Consensus       128 ~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~-P~~~~~l~~~~  176 (198)
                      . +..+-.+....|..  ......+..|++++..+.+.+. |.++.++.+..
T Consensus       230 ~-~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l  280 (301)
T PRK07259        230 Y-QAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL  280 (301)
T ss_pred             H-HhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence            3 22222232223322  2456777899999988888666 77776665543

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.44  E-value=0.023  Score=47.01  Aligned_cols=162  Identities=17%  Similarity=0.214  Sum_probs=100.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC---CCHHHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK---MTEDLIYEHFISV   78 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~---~~~~~i~~y~~~i   78 (198)
                      .....++..+-++...+.. +.|+++.+...+.++..+.++.+++.|+|++-+-  .|......   .+++.+.+..+++
T Consensus        78 ~~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~v  157 (289)
T cd02810          78 PNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAV  157 (289)
T ss_pred             CCcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHH
Confidence            3455666666666555542 7999999999899999999999999999999874  55532210   1367778888888


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHH----HHHHcCCCEEEEeeC--------------------------------CHH
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTL----VKLAHHENIRGVKDT--------------------------------DNI  122 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~p~i~giK~s--------------------------------d~~  122 (198)
                      .+.+++||++==.|.     ++.+..    ..+.+. .+.++.-+                                .+.
T Consensus       158 r~~~~~pv~vKl~~~-----~~~~~~~~~a~~l~~~-Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~  231 (289)
T cd02810         158 KAAVDIPLLVKLSPY-----FDLEDIVELAKAAERA-GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALR  231 (289)
T ss_pred             HHccCCCEEEEeCCC-----CCHHHHHHHHHHHHHc-CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHH
Confidence            888899999854442     343333    333232 23333221                                011


Q ss_pred             HHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHH
Q psy9711         123 KLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAVL--GGPICELY  173 (198)
Q Consensus       123 ~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~  173 (198)
                      .+.++. +..++++.|+  .|..  ......+..|++++..+.+.+.  |.++.++.
T Consensus       232 ~v~~i~-~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~  287 (289)
T cd02810         232 WVARLA-ARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK  287 (289)
T ss_pred             HHHHHH-HhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence            223332 2332244444  3333  2466778899999988887654  77666553

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.44  E-value=0.048  Score=46.11  Aligned_cols=163  Identities=18%  Similarity=0.157  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC-cCCCC----CHHHHHHHHHHHHc
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY-FQKKM----TEDLIYEHFISVAD   80 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y-~~~~~----~~~~i~~y~~~i~~   80 (198)
                      +...+...+-++.+.+..+.||++.+...+.++-.+.++.++++|+|++-+--... ..+..    .++.+.+..+.+.+
T Consensus        81 n~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~  160 (325)
T cd04739          81 NLGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKS  160 (325)
T ss_pred             CcCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHh
Confidence            34456666655554433378999999888899999999999999999997743211 11110    12446677788888


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--------CH---------------------HHHHHHHhh
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--------DN---------------------IKLANMANQ  130 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--------d~---------------------~~~~~~~~~  130 (198)
                      ++++||++==.|..+    ....+.+.+ +. ++.|+-.+        |.                     ..+.++. +
T Consensus       161 ~~~iPv~vKl~p~~~----~~~~~a~~l~~~-Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~-~  234 (325)
T cd04739         161 AVTIPVAVKLSPFFS----ALAHMAKQLDAA-GADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS-G  234 (325)
T ss_pred             ccCCCEEEEcCCCcc----CHHHHHHHHHHc-CCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH-c
Confidence            889999987655422    233333333 32 22222211        11                     1111222 2


Q ss_pred             cCCCCeEEE-e-cCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         131 TKDLNFSVF-A-GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       131 ~~~~~~~v~-~-G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      .  .++.|+ + |-.  ......+.+|++++..+++.+.  |..+.+|.+.+
T Consensus       235 ~--~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L  284 (325)
T cd04739         235 R--VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL  284 (325)
T ss_pred             c--cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence            2  234444 2 222  2356777899999998888765  66665555544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.23  E-value=0.075  Score=44.34  Aligned_cols=161  Identities=21%  Similarity=0.252  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEE--cCCCCc--C-----CCCCHHHHHHHHHH
Q psy9711           9 EEEKLKIISTLRQET-KKTIIAGTYCE-STRATIDLTQKAAKAGANAALI--LCPYYF--Q-----KKMTEDLIYEHFIS   77 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~-~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~--~~P~y~--~-----~~~~~~~i~~y~~~   77 (198)
                      .++..+-++...+.. ..|+++.+.+. +.++-.+.++.+++.|+|++-+  ..|...  +     ...+++.+.+..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~  162 (299)
T cd02940          83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRW  162 (299)
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHH
Confidence            455555555444444 58999999776 8999999999999999999887  344431  0     00247888888999


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHHHH-cC--CCEE---------EE-------------ee-----C---C----
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HH--ENIR---------GV-------------KD-----T---D----  120 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~--p~i~---------gi-------------K~-----s---d----  120 (198)
                      +-+.+++||++==.|..+    ....+.+.+ +.  ..|+         ++             +.     |   +    
T Consensus       163 v~~~~~~Pv~vKl~~~~~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~  238 (299)
T cd02940         163 VREAVKIPVIAKLTPNIT----DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIA  238 (299)
T ss_pred             HHHhcCCCeEEECCCCch----hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHH
Confidence            988889999987555322    233444433 32  3333         11             00     0   1    


Q ss_pred             HHHHHHHHhhcCCCCeEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHH
Q psy9711         121 NIKLANMANQTKDLNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD  174 (198)
Q Consensus       121 ~~~~~~~~~~~~~~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~  174 (198)
                      +..+.++. +..++++.|+. | -.  ......+.+|++++..+++.+.  |..+.+|.+
T Consensus       239 l~~v~~~~-~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~  297 (299)
T cd02940         239 LRAVSQIA-RAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT  297 (299)
T ss_pred             HHHHHHHH-HhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhh
Confidence            23334433 33334566553 2 11  2456778899999999988775  666666543

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=97.09  E-value=0.11  Score=42.55  Aligned_cols=141  Identities=18%  Similarity=0.228  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHhc-CCeEEEeCCCCc-HHHHH-HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           6 KSTEEEKLKIISTLRQET-KKTIIAGTYCES-TRATI-DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~-~~~~i-~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      -+|.+.-.++++.+.+.- ++|++.=...+- ...-+ +..+++++.|+|++++.-=        +-+--+.+...+++.
T Consensus        75 g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--------P~ee~~~~~~~~~~~  146 (265)
T COG0159          75 GVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--------PPEESDELLKAAEKH  146 (265)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--------ChHHHHHHHHHHHHc
Confidence            367788889999998776 899876554433 33334 4589999999999998521        222234666777788


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHcCC----------CEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hh
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAHHE----------NIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GY  145 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p----------~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~  145 (198)
                      ++-.+..-.|.     -+.+.++++++..          .+.|.+..   +..+..+.+++..  +..+..|.+    ++
T Consensus       147 gi~~I~lvaPt-----t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~  219 (265)
T COG0159         147 GIDPIFLVAPT-----TPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQ  219 (265)
T ss_pred             CCcEEEEeCCC-----CCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHH
Confidence            98888877774     4578888888643          45555555   2233333332333  556676655    35


Q ss_pred             HHHHhhcCCCeEEeccc
Q psy9711         146 LLSGLLVGCAGGINALS  162 (198)
Q Consensus       146 ~~~~l~~G~~G~is~~~  162 (198)
                      ....... +||++.|++
T Consensus       220 ~~~v~~~-ADGVIVGSA  235 (265)
T COG0159         220 AAQVAEA-ADGVIVGSA  235 (265)
T ss_pred             HHHHHHh-CCeEEEcHH
Confidence            5566677 999999975

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.04  E-value=0.14  Score=44.81  Aligned_cols=164  Identities=15%  Similarity=0.159  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc--CCCCc-C------CCCCHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGTYCE-STRATIDLTQKAAKAGANAALIL--CPYYF-Q------KKMTEDLIYEHFI   76 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~--~P~y~-~------~~~~~~~i~~y~~   76 (198)
                      ..+++.+.++...+.. +.|+++++.+. +.++-.+.++.+++.|+|++-+-  .|... .      ...+++.+.+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~  161 (420)
T PRK08318         82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTR  161 (420)
T ss_pred             CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHH
Confidence            3455556565555555 68999999887 78889999999999999998864  45411 1      0124788888889


Q ss_pred             HHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEe------------------------------eC-C-----
Q psy9711          77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK------------------------------DT-D-----  120 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK------------------------------~s-d-----  120 (198)
                      .+.+.+++||++==.|..+    +...+.+.++-.++.|+-                              .| .     
T Consensus       162 ~v~~~~~~Pv~vKl~p~~~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~  237 (420)
T PRK08318        162 WVKRGSRLPVIVKLTPNIT----DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPI  237 (420)
T ss_pred             HHHhccCCcEEEEcCCCcc----cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHH
Confidence            9988889999987666432    233444433212222222                              11 1     


Q ss_pred             -HHHHHHHHhhcCC-CCeEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         121 -NIKLANMANQTKD-LNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       121 -~~~~~~~~~~~~~-~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                       +..+.++. +..+ +++.|+. | -.  ......+.+|++++..+++.+.  |..+.+|.+-+
T Consensus       238 ~l~~v~~~~-~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L  300 (420)
T PRK08318        238 ALNMVAEIA-RDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGL  300 (420)
T ss_pred             HHHHHHHHH-hccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHH
Confidence             12222322 2221 2455552 2 11  2356678899999999999887  76666665543

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.016  Score=47.17  Aligned_cols=137  Identities=15%  Similarity=0.172  Sum_probs=92.3

Q ss_pred             CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~   93 (198)
                      ++|+|+..++.+       -...+-..+.|..+|+|+|.+.-......   +.+.++-+.++.+.+   ++|+++.-.|.
T Consensus        77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---e~~~i~~~~~v~~~a~~~Gmp~v~~~YpR  153 (265)
T COG1830          77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET---EREMIENISQVVEDAHELGMPLVAWAYPR  153 (265)
T ss_pred             CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc---hHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence            789999887763       13334556778899999999975554433   555555555555443   89999988886


Q ss_pred             Cccc----ccCHHHHH---HHH-cC-CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh--------hHHHHhhcCCC
Q psy9711          94 VTNI----DISVDTLV---KLA-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG--------YLLSGLLVGCA  155 (198)
Q Consensus        94 ~tg~----~l~~~~l~---~L~-~~-p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~--------~~~~~l~~G~~  155 (198)
                      ..+.    ..+++.+.   ||+ ++ -.|+=.|.+ |.+.|++... ..+-.+.+-.|...        +...++..|+.
T Consensus       154 g~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~-~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~  232 (265)
T COG1830         154 GPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVA-ACGVPVVIAGGPKTETEREFLEMVTAAIEAGAM  232 (265)
T ss_pred             CCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHH-hCCCCEEEeCCCCCCChHHHHHHHHHHHHccCc
Confidence            5555    56777665   676 55 478888888 9999999884 45544444333221        23456788999


Q ss_pred             eEEecccccc
Q psy9711         156 GGINALSAVL  165 (198)
Q Consensus       156 G~is~~~n~~  165 (198)
                      |.+.|= |+|
T Consensus       233 G~~~GR-Nif  241 (265)
T COG1830         233 GVAVGR-NIF  241 (265)
T ss_pred             chhhhh-hhh
Confidence            998774 443

>PRK08227 autoinducer 2 aldolase; Validated

Probab=96.94  E-value=0.042  Score=45.11  Aligned_cols=161  Identities=11%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~   93 (198)
                      ++|+|+.+++.+       .+..+--.+.|.++|||+|.+.-..- ...  +.+.++.+.+|++.+   ++|++. -.|.
T Consensus        74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~G-s~~--E~~~l~~l~~v~~ea~~~G~Plla-~~pr  149 (264)
T PRK08227         74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIG-SEY--EHQSIKNIIQLVDAGLRYGMPVMA-VTAV  149 (264)
T ss_pred             CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHH--HHHHHHHHHHHHHHHHHhCCcEEE-EecC
Confidence            689999887632       24445557889999999999874332 222  777777788777665   799998 4464


Q ss_pred             CcccccCHHH---HHHHH-cC-CCEEEEeeCCHHHHHHHHhhcCCCCeEEEecCh---h----hHHHHhhcCCCeEEecc
Q psy9711          94 VTNIDISVDT---LVKLA-HH-ENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA---G----YLLSGLLVGCAGGINAL  161 (198)
Q Consensus        94 ~tg~~l~~~~---l~~L~-~~-p~i~giK~sd~~~~~~~~~~~~~~~~~v~~G~d---~----~~~~~l~~G~~G~is~~  161 (198)
                      .....=+++.   ..|++ ++ ..|+=++.+. +.+.++.. ..+-.+.+-.|.-   .    +...++..|+.|+..|=
T Consensus       150 G~~~~~~~~~ia~aaRiaaELGADiVK~~y~~-~~f~~vv~-a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GR  227 (264)
T PRK08227        150 GKDMVRDARYFSLATRIAAEMGAQIIKTYYVE-EGFERITA-GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGR  227 (264)
T ss_pred             CCCcCchHHHHHHHHHHHHHHcCCEEecCCCH-HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeech
Confidence            3222223333   34666 55 3777777764 55666663 3434443333422   1    23457889999988764


Q ss_pred             cccc----hHHHHHHHHHHHcC--CHHHHHHHHHHh
Q psy9711         162 SAVL----GGPICELYDLAKAG--KWEEAMKLQHRL  191 (198)
Q Consensus       162 ~n~~----P~~~~~l~~~~~~g--d~~~A~~l~~~~  191 (198)
                       |+|    |..+.+-..++-.+  ..++|.++++++
T Consensus       228 -NIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~~~  262 (264)
T PRK08227        228 -NIFQSEHPVAMIKAVHAVVHENETAKEAYELYLSE  262 (264)
T ss_pred             -hhhccCCHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence             665    44444444443323  578888887664

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=96.90  E-value=0.014  Score=47.19  Aligned_cols=89  Identities=24%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEEEeCCC-----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTIIAGTYC-----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~-----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ..++.+|..+=++.++++.   +.-|++=+-+     .+.+++|++++.+.++|||++++..+    .  +.+++.++-+
T Consensus       115 ~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~----~--~~~~i~~~~~  188 (238)
T PF13714_consen  115 QLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGL----Q--SEEEIERIVK  188 (238)
T ss_dssp             -B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTS----S--SHHHHHHHHH
T ss_pred             ceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCC----C--CHHHHHHHHH
Confidence            3458899999999999887   5667776544     46799999999999999999998766    2  2666555555


Q ss_pred             HHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      ++    +.|+.+-..|.    .++.+.+.+|
T Consensus       189 ~~----~~Pl~v~~~~~----~~~~~eL~~l  211 (238)
T PF13714_consen  189 AV----DGPLNVNPGPG----TLSAEELAEL  211 (238)
T ss_dssp             HH----SSEEEEETTSS----SS-HHHHHHT
T ss_pred             hc----CCCEEEEcCCC----CCCHHHHHHC
Confidence            44    58877655332    3787877777

...

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=96.84  E-value=0.24  Score=41.71  Aligned_cols=153  Identities=17%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE--cCCC------CcCC--CCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALI--LCPY------YFQK--KMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~--~~P~------y~~~--~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ..|+++++.+++.++..+.++.++++|+|++=+  ..|.      |...  -..++-+.+-.+.|-+++++||.+.-..+
T Consensus        62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g  141 (319)
T TIGR00737        62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG  141 (319)
T ss_pred             cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence            789999999999999999999999999999966  3553      1110  01256666777778778899999876433


Q ss_pred             CcccccCH-HHHHHHHcC--CCE--EEE-ee-----C-CHHHHHHHHhhcCCCCeEEE-ecC-h--hhHHHHh-hcCCCe
Q psy9711          94 VTNIDISV-DTLVKLAHH--ENI--RGV-KD-----T-DNIKLANMANQTKDLNFSVF-AGS-A--GYLLSGL-LVGCAG  156 (198)
Q Consensus        94 ~tg~~l~~-~~l~~L~~~--p~i--~gi-K~-----s-d~~~~~~~~~~~~~~~~~v~-~G~-d--~~~~~~l-~~G~~G  156 (198)
                      ......+. +...+|.+.  ..|  .|- +.     . ++..+.++. +..+  +.|+ +|. .  ......+ ..|++|
T Consensus       142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~-~~~~--ipvi~nGgI~~~~da~~~l~~~gad~  218 (319)
T TIGR00737       142 WDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVK-QAVR--IPVIGNGDIFSPEDAKAMLETTGCDG  218 (319)
T ss_pred             cCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHH-HcCC--CcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence            22222223 444445443  222  221 11     1 444444444 3332  3333 332 1  2345556 478999


Q ss_pred             EEeccccc-chHHHHHHHHHHHcC
Q psy9711         157 GINALSAV-LGGPICELYDLAKAG  179 (198)
Q Consensus       157 ~is~~~n~-~P~~~~~l~~~~~~g  179 (198)
                      ++.|-+.+ -|.++.++-+.+..|
T Consensus       219 VmigR~~l~~P~l~~~~~~~~~~~  242 (319)
T TIGR00737       219 VMIGRGALGNPWLFRQIEQYLTTG  242 (319)
T ss_pred             EEEChhhhhCChHHHHHHHHHhCC
Confidence            99998765 588887776666555

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=96.68  E-value=0.043  Score=45.70  Aligned_cols=89  Identities=20%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHHHHhc-C--CeEEEeCC---CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           7 STEEEKLKIISTLRQET-K--KTIIAGTY---CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv~---~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .+.+|..+=++.++++. +  +-|++=+-   ....+++|++++.++++|||++++..|.      +.+++.    .+++
T Consensus       130 v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~------~~~~i~----~~~~  199 (292)
T PRK11320        130 VSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT------ELEMYR----RFAD  199 (292)
T ss_pred             cCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC------CHHHHH----HHHH
Confidence            58889999999998876 3  34444432   2358999999999999999999996542      255555    4555


Q ss_pred             cCCCCEEE--EeCCCCcccccCHHHHHHH
Q psy9711          81 NSPIPVII--YNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        81 ~~~~pi~l--Yn~P~~tg~~l~~~~l~~L  107 (198)
                      +.+.|++.  ...|. + -.++.+.+.+|
T Consensus       200 ~~~~Pl~~n~~~~~~-~-p~~s~~~L~~l  226 (292)
T PRK11320        200 AVKVPILANITEFGA-T-PLFTTEELASA  226 (292)
T ss_pred             hcCCCEEEEeccCCC-C-CCCCHHHHHHc
Confidence            55788744  22221 1 23566666665

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=96.52  E-value=0.024  Score=45.89  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCC------------------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYC------------------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~------------------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |..+.++.++++ +++|++.++.                  .+.++++++++.++++|||++++-.+     +  .+++ 
T Consensus       113 ~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-----~--~e~~-  183 (240)
T cd06556         113 WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-----P--VELA-  183 (240)
T ss_pred             HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-----C--HHHH-
Confidence            444555666544 7999999886                  24679999999999999999998533     2  4444 


Q ss_pred             HHHHHHHccCCCCEEEEeCCC-CcccccCHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTF-VTNIDISVDTLV  105 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~-~tg~~l~~~~l~  105 (198)
                         +.++++.++|++..=.|. ..|..+....+.
T Consensus       184 ---~~i~~~~~~P~~~~gag~~~dgq~lv~~d~l  214 (240)
T cd06556         184 ---KQITEALAIPLAGIGAGSGTDGQFLVLADAF  214 (240)
T ss_pred             ---HHHHHhCCCCEEEEecCcCCCceEEeHHhhh
Confidence               456667889987644433 234445544443

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.51  E-value=0.23  Score=39.52  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHhc-CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           6 KSTEEEKLKIISTLRQET-KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +|+.+.-.+.++...+.. +.| +++|+|+-.+.+   .++.|.++|++.++  +|.+      .+++.++    |...+
T Consensus        45 t~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~---~~~~a~~aGA~Fiv--sP~~------~~~v~~~----~~~~~  109 (213)
T PRK06552         45 TYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV---TARLAILAGAQFIV--SPSF------NRETAKI----CNLYQ  109 (213)
T ss_pred             ECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHH----HHHcC
Confidence            345556667777777665 333 889999876655   56778899999877  4543      5667776    44556


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEee-C--CHHHHHHHHhhcCCCCeE--EEecCh-hhHHHHhhcCCCe
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKD-T--DNIKLANMANQTKDLNFS--VFAGSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~-s--d~~~~~~~~~~~~~~~~~--v~~G~d-~~~~~~l~~G~~G  156 (198)
                      +|++    |   |. .++..+.+..+ -..++++=- +  .+..+..+. ... +++.  ...|-. +.+...+..|+++
T Consensus       110 i~~i----P---G~-~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~-~~~-p~ip~~atGGI~~~N~~~~l~aGa~~  179 (213)
T PRK06552        110 IPYL----P---GC-MTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIK-GPL-PQVNVMVTGGVNLDNVKDWFAAGADA  179 (213)
T ss_pred             CCEE----C---Cc-CCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHh-hhC-CCCEEEEECCCCHHHHHHHHHCCCcE
Confidence            7765    3   33 45665655543 345555511 1  455555554 222 3344  344544 4577888999998


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      +..+.+ +++        ...++||++-.+.-+.+
T Consensus       180 vavgs~-l~~--------~~~~~~~~~i~~~a~~~  205 (213)
T PRK06552        180 VGIGGE-LNK--------LASQGDFDLITEKAKKY  205 (213)
T ss_pred             EEEchH-HhC--------ccccCCHHHHHHHHHHH
Confidence            876643 222        23367776655544443

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=96.51  E-value=0.1  Score=43.87  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             HHHHH----HHHHHHHHhc--CCeEEEeCCC-------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC-------CH
Q psy9711           9 EEEKL----KIISTLRQET--KKTIIAGTYC-------ESTRATIDLTQKAAKAGANAALILCPYYFQKKM-------TE   68 (198)
Q Consensus         9 ~~Er~----~l~~~~~~~~--~~pvi~gv~~-------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~-------~~   68 (198)
                      .+.|.    ++++.+++.+  ++||.+=++.       .+.++++++++.+++.|+|.+-+....+..+..       .+
T Consensus       187 ~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~  266 (327)
T cd02803         187 LENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPE  266 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCc
Confidence            45664    5555555555  5677764442       367899999999999999999988766543220       02


Q ss_pred             HHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEE
Q psy9711          69 DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGV  116 (198)
Q Consensus        69 ~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~gi  116 (198)
                      ..-.++.+.+.+.+++||+.      .|.--+++...++.+.  -.++++
T Consensus       267 ~~~~~~~~~ir~~~~iPVi~------~Ggi~t~~~a~~~l~~g~aD~V~i  310 (327)
T cd02803         267 GYFLELAEKIKKAVKIPVIA------VGGIRDPEVAEEILAEGKADLVAL  310 (327)
T ss_pred             chhHHHHHHHHHHCCCCEEE------eCCCCCHHHHHHHHHCCCCCeeee
Confidence            34456777888888999886      3444468888888754  345554

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=96.48  E-value=0.25  Score=41.47  Aligned_cols=165  Identities=10%  Similarity=0.033  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcC-CCEEEE--cCCCCcC---CCCCHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAG-ANAALI--LCPYYFQ---KKMTEDLIYEHFISV   78 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~G-ad~v~~--~~P~y~~---~~~~~~~i~~y~~~i   78 (198)
                      +...++..+-++...+.. +.|+|+.+.+.+.++-.+.++..+++| +|++-+  ..|....   ...+++.+.+..+.|
T Consensus        73 n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v  152 (310)
T PRK02506         73 NLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEV  152 (310)
T ss_pred             CcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHH
Confidence            445566666666554444 699999988889999999999999998 999876  3454211   112367888888999


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHc---CCCEEE---Ee--------------------e-----C-CH-----
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAH---HENIRG---VK--------------------D-----T-DN-----  121 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~g---iK--------------------~-----s-d~-----  121 (198)
                      -+.+++||++==.|.     ++...+.+.++   ...+.|   +.                    .     | ..     
T Consensus       153 ~~~~~~Pv~vKlsp~-----~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~a  227 (310)
T PRK02506        153 FTYFTKPLGVKLPPY-----FDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTA  227 (310)
T ss_pred             HHhcCCccEEecCCC-----CCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHH
Confidence            888899998855553     23344443331   112222   11                    0     1 00     


Q ss_pred             -HHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         122 -IKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       122 -~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                       ..+.++. +..++++.|.  .|-.  ......+.+|++.+..+++.+.  |..+.++.+.+
T Consensus       228 l~~v~~~~-~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L  288 (310)
T PRK02506        228 LANVRAFY-QRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKEL  288 (310)
T ss_pred             HHHHHHHH-HhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHH
Confidence             1112222 2333455554  2332  2466788999999998888776  77777776655

>TIGR02317 prpB methylisocitrate lyase

Probab=96.47  E-value=0.061  Score=44.67  Aligned_cols=91  Identities=20%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHhc-C--CeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           7 STEEEKLKIISTLRQET-K--KTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .+.+|..+=++.++++. +  +-|++=+   .....+++|++++.+.++|||++++-.|.      +.+++.    .+++
T Consensus       125 v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~------~~e~i~----~~~~  194 (285)
T TIGR02317       125 VSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT------SLEEFR----QFAK  194 (285)
T ss_pred             cCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC------CHHHHH----HHHH
Confidence            48889999999999887 4  3344443   23358999999999999999999995431      266654    5555


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      +.+.|+++--........++.+.+.+|
T Consensus       195 ~i~~Pl~~n~~~~~~~p~~s~~eL~~l  221 (285)
T TIGR02317       195 AVKVPLLANMTEFGKTPLFTADELREA  221 (285)
T ss_pred             hcCCCEEEEeccCCCCCCCCHHHHHHc
Confidence            567887432111001113566666655

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.41  E-value=0.14  Score=40.97  Aligned_cols=124  Identities=15%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH---ccCCCCEEEEeCCC--CcccccCHHHHHHH--
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA---DNSPIPVIIYNNTF--VTNIDISVDTLVKL--  107 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~---~~~~~pi~lYn~P~--~tg~~l~~~~l~~L--  107 (198)
                      ++..-...++.|.+.|++++.+....- ...  .+++.+..+++.   +..++|+++=....  ..+..++.+.+.+.  
T Consensus        74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~-~~~--~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~  150 (235)
T cd00958          74 NDKVLVASVEDAVRLGADAVGVTVYVG-SEE--EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAAR  150 (235)
T ss_pred             CchhhhcCHHHHHHCCCCEEEEEEecC-Cch--HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHH
Confidence            445556678899999999996654422 222  555555555555   45689999833221  11222456666653  


Q ss_pred             -H-c-CCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh--------hhHHHHhhcCCCeEEeccc
Q psy9711         108 -A-H-HENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--------GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       108 -~-~-~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d--------~~~~~~l~~G~~G~is~~~  162 (198)
                       + + -+.++++..+ ++..+.++.+ ..+-++.+..|..        +.+...+..|++|+..|.+
T Consensus       151 ~a~~~GaD~Ik~~~~~~~~~~~~i~~-~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~  216 (235)
T cd00958         151 IGAELGADIVKTKYTGDAESFKEVVE-GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN  216 (235)
T ss_pred             HHHHHCCCEEEecCCCCHHHHHHHHh-cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence             3 3 3567777656 8888888774 3444453333421        2255678899999876653

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=96.37  E-value=0.21  Score=40.98  Aligned_cols=147  Identities=17%  Similarity=0.183  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCC--cccccCHHHHHHH---H
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFV--TNIDISVDTLVKL---A  108 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~--tg~~l~~~~l~~L---~  108 (198)
                      +.-+..++.|.+.|||++.+....- ...  ++++.+..++|.+.   .++|+++-..|..  .....+++.+.+.   +
T Consensus        93 ~~~~~~ve~A~~~Gad~v~~~~~~g-~~~--~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a  169 (267)
T PRK07226         93 KVLVGTVEEAIKLGADAVSVHVNVG-SET--EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVA  169 (267)
T ss_pred             ceeeecHHHHHHcCCCEEEEEEecC-Chh--HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHH
Confidence            4446678899999999998875432 222  56677777766655   4899988543321  0112355554443   3


Q ss_pred             cCCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh--h------hHHHHhhcCCCeEEecccccc----hHHH-HHH
Q psy9711         109 HHENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA--G------YLLSGLLVGCAGGINALSAVL----GGPI-CEL  172 (198)
Q Consensus       109 ~~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d--~------~~~~~l~~G~~G~is~~~n~~----P~~~-~~l  172 (198)
                      ..-..-.+|.+   +...+.++.. ..+-++....|..  .      ++...+..|++|+..+- +++    |+.. .++
T Consensus       170 ~e~GAD~vKt~~~~~~~~l~~~~~-~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr-~i~~~~~p~~~~~~l  247 (267)
T PRK07226        170 AELGADIVKTNYTGDPESFREVVE-GCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGR-NVFQHEDPEAITRAI  247 (267)
T ss_pred             HHHCCCEEeeCCCCCHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhh-hhhcCCCHHHHHHHH
Confidence            22355666887   5677776663 2234465556655  2      24455789999776554 454    4433 344


Q ss_pred             HHHHHcC-CHHHHHHHH
Q psy9711         173 YDLAKAG-KWEEAMKLQ  188 (198)
Q Consensus       173 ~~~~~~g-d~~~A~~l~  188 (198)
                      ...+..| ..++|.+++
T Consensus       248 ~~~v~~~~~~~ea~~~~  264 (267)
T PRK07226        248 SAVVHEGASVEEALKIL  264 (267)
T ss_pred             HHHHhCCCCHHHHHHHh
Confidence            4444444 356666543

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.35  E-value=0.31  Score=38.72  Aligned_cols=153  Identities=13%  Similarity=0.075  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      |+.++..+.++...+... .+++|+|+-.+.   +.++.|.++||+.++.  |.+      .+++.++-++         
T Consensus        48 l~~~~~~~~I~~l~~~~p-~~~IGAGTVl~~---~~a~~a~~aGA~Fivs--P~~------~~~vi~~a~~---------  106 (212)
T PRK05718         48 LRTPAALEAIRLIAKEVP-EALIGAGTVLNP---EQLAQAIEAGAQFIVS--PGL------TPPLLKAAQE---------  106 (212)
T ss_pred             cCCccHHHHHHHHHHHCC-CCEEEEeeccCH---HHHHHHHHcCCCEEEC--CCC------CHHHHHHHHH---------
Confidence            666778888888877652 256666655444   7788999999997664  442      3477777665         


Q ss_pred             EEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeCC----HHHHHHHHhhcCCCCeEEE--ecChh-hHHHHhhcCCCeEE
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDTD----NIKLANMANQTKDLNFSVF--AGSAG-YLLSGLLVGCAGGI  158 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~sd----~~~~~~~~~~~~~~~~~v~--~G~d~-~~~~~l~~G~~G~i  158 (198)
                        ++.|...|. ++|..+.+..+.. .++-+-..+    +..+..+. ... +++.++  .|-+. .+...+..|...++
T Consensus       107 --~~i~~iPG~-~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~-~p~-p~~~~~ptGGV~~~ni~~~l~ag~v~~v  181 (212)
T PRK05718        107 --GPIPLIPGV-STPSELMLGMELGLRTFKFFPAEASGGVKMLKALA-GPF-PDVRFCPTGGISPANYRDYLALPNVLCI  181 (212)
T ss_pred             --cCCCEeCCC-CCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHh-ccC-CCCeEEEeCCCCHHHHHHHHhCCCEEEE
Confidence              555544454 4555566655543 565554442    34444443 222 444443  45543 56677888855555


Q ss_pred             ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy9711         159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV  192 (198)
Q Consensus       159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~  192 (198)
                      . .++++|+..      ..++||++..+..+++.
T Consensus       182 g-gs~L~~~~~------~~~~~~~~i~~~a~~~~  208 (212)
T PRK05718        182 G-GSWMVPKDA------IENGDWDRITRLAREAV  208 (212)
T ss_pred             E-ChHhCCcch------hccccHHHHHHHHHHHH
Confidence            4 556666332      45677777666555543

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=96.32  E-value=0.38  Score=38.15  Aligned_cols=145  Identities=17%  Similarity=0.174  Sum_probs=86.8

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC--------CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK--------MTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~--------~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.|+++++++.+.++..+.++.++++|+|++-+-  .|....-+        ...+.+.+..+.+-+.++.|+.+--...
T Consensus        54 ~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~  133 (231)
T cd02801          54 ERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG  133 (231)
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence            8999999999999999999999999999999774  34321100        1266677777777777788888743322


Q ss_pred             CcccccCHHHHHHHHcCCCEEEEe-------e----C-CHHHHHHHHhhcCCCCeEEE-ecC---hhhHHHHhhc-CCCe
Q psy9711          94 VTNIDISVDTLVKLAHHENIRGVK-------D----T-DNIKLANMANQTKDLNFSVF-AGS---AGYLLSGLLV-GCAG  156 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~p~i~giK-------~----s-d~~~~~~~~~~~~~~~~~v~-~G~---d~~~~~~l~~-G~~G  156 (198)
                      .+...-..+.+..|.+. ++.++.       .    . ++..+.++. +.  .++.|+ +|.   -+.....+.. |++|
T Consensus       134 ~~~~~~~~~~~~~l~~~-Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~-~~--~~ipvi~~Ggi~~~~d~~~~l~~~gad~  209 (231)
T cd02801         134 WDDEEETLELAKALEDA-GASALTVHGRTREQRYSGPADWDYIAEIK-EA--VSIPVIANGDIFSLEDALRCLEQTGVDG  209 (231)
T ss_pred             cCCchHHHHHHHHHHHh-CCCEEEECCCCHHHcCCCCCCHHHHHHHH-hC--CCCeEEEeCCCCCHHHHHHHHHhcCCCE
Confidence            11110112233334333 344441       1    1 555555544 32  334444 332   1235556666 8999


Q ss_pred             EEeccccc-chHHHHHH
Q psy9711         157 GINALSAV-LGGPICEL  172 (198)
Q Consensus       157 ~is~~~n~-~P~~~~~l  172 (198)
                      ++.|.+.+ -|.++.++
T Consensus       210 V~igr~~l~~P~~~~~~  226 (231)
T cd02801         210 VMIGRGALGNPWLFREI  226 (231)
T ss_pred             EEEcHHhHhCCHHHHhh
Confidence            99887754 36655544

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=96.30  E-value=0.11  Score=43.21  Aligned_cols=56  Identities=13%  Similarity=0.227  Sum_probs=46.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      |..+--+.+...++++.+.+..++||++=++. +.++.+++++.++++|+|++.+..
T Consensus       135 g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~-~~~~~~~~a~~l~~~G~d~i~v~n  190 (300)
T TIGR01037       135 GIAIGQDPELSADVVKAVKDKTDVPVFAKLSP-NVTDITEIAKAAEEAGADGLTLIN  190 (300)
T ss_pred             ccccccCHHHHHHHHHHHHHhcCCCEEEECCC-ChhhHHHHHHHHHHcCCCEEEEEc
Confidence            44555677888889998887768899988874 678999999999999999999864

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=96.18  E-value=0.059  Score=42.82  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCC-cH-HHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCE-ST-RATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      ..+.-.++++.+.+.++.||.+.+... +. ++++++++.+.+.|+|.+.+....... +.  ...-.++.+.+.+.+++
T Consensus       107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~--~~~~~~~~~~i~~~~~i  184 (231)
T cd02801         107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYS--GPADWDYIAEIKEAVSI  184 (231)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCC--CCCCHHHHHHHHhCCCC
Confidence            344455666666655467777765321 22 489999999999999999887643211 11  11124666778888889


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~  127 (198)
                      ||+.      .|.--+++.+.++.+...+.++=..     |+..+.++
T Consensus       185 pvi~------~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~  226 (231)
T cd02801         185 PVIA------NGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI  226 (231)
T ss_pred             eEEE------eCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence            9887      3444578888888765444333333     55555443

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=96.13  E-value=0.69  Score=39.03  Aligned_cols=154  Identities=14%  Similarity=0.084  Sum_probs=95.0

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCC--cCC------CCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYY--FQK------KMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y--~~~------~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ..|+++++.+++.++..+.++.+++.|+|++=+-  .|.-  .+.      -.+++-+.+-.+.+.++++.||.+--.-+
T Consensus        64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G  143 (321)
T PRK10415         64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG  143 (321)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence            5788899999999999999999999999998775  3531  110      01378888888888888899988765322


Q ss_pred             CcccccCHHHHH-HHHcC--CCE--EEEe------eC-CHHHHHHHHhhcCCCCeEEE-ecCh---hhHHHHhh-cCCCe
Q psy9711          94 VTNIDISVDTLV-KLAHH--ENI--RGVK------DT-DNIKLANMANQTKDLNFSVF-AGSA---GYLLSGLL-VGCAG  156 (198)
Q Consensus        94 ~tg~~l~~~~l~-~L~~~--p~i--~giK------~s-d~~~~~~~~~~~~~~~~~v~-~G~d---~~~~~~l~-~G~~G  156 (198)
                      ++....+...+. .+.+.  ..|  .|..      -. |+..+.++.+ ..  ++.|+ +|.=   ......+. .|++|
T Consensus       144 ~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~-~~--~iPVI~nGgI~s~~da~~~l~~~gadg  220 (321)
T PRK10415        144 WAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ-KV--SIPVIANGDITDPLKARAVLDYTGADA  220 (321)
T ss_pred             ccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHH-hc--CCcEEEeCCCCCHHHHHHHHhccCCCE
Confidence            222112232333 33332  222  2221      11 5565555542 22  34443 3421   12344554 69999


Q ss_pred             EEeccccc-chHHHHHHHHHHHcCC
Q psy9711         157 GINALSAV-LGGPICELYDLAKAGK  180 (198)
Q Consensus       157 ~is~~~n~-~P~~~~~l~~~~~~gd  180 (198)
                      ++.|-+.+ -|.++.++-+.+..|+
T Consensus       221 VmiGR~~l~nP~if~~~~~~~~~~~  245 (321)
T PRK10415        221 LMIGRAAQGRPWIFREIQHYLDTGE  245 (321)
T ss_pred             EEEChHhhcCChHHHHHHHHHhCCC
Confidence            99998876 6888888877666553

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=96.09  E-value=0.052  Score=45.57  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=72.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeC--CCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGT--YCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      |-+..-+++.-.++++.+++.+++||-+-+  +.. +.++++++++..+++|++++.+.+-.--.. .+...=.++++.|
T Consensus       100 Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~-~~~~a~w~~i~~i  178 (309)
T PF01207_consen  100 GAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR-YKGPADWEAIAEI  178 (309)
T ss_dssp             GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC-CTS---HHHHHHC
T ss_pred             ChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc-CCcccchHHHHHH
Confidence            445556777778899999887777776643  333 578899999999999999999987432111 1123345677888


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      .+.+++||+.      .|--.+++...++.+..++.|+=-.
T Consensus       179 ~~~~~ipvi~------NGdI~s~~d~~~~~~~tg~dgvMig  213 (309)
T PF01207_consen  179 KEALPIPVIA------NGDIFSPEDAERMLEQTGADGVMIG  213 (309)
T ss_dssp             HHC-TSEEEE------ESS--SHHHHHHHCCCH-SSEEEES
T ss_pred             hhcccceeEE------cCccCCHHHHHHHHHhcCCcEEEEc
Confidence            8888988876      4556788999998877778888776

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=96.05  E-value=0.15  Score=42.60  Aligned_cols=90  Identities=19%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHhc-C--CeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           7 STEEEKLKIISTLRQET-K--KTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .+.+|..+=++.++++. .  +-|++=+   .....+++|++++.+.++|||++++-.|    .+  .+++.+    +++
T Consensus       129 v~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~----~~--~~ei~~----~~~  198 (294)
T TIGR02319       129 ISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM----LD--VEEMKR----VRD  198 (294)
T ss_pred             cCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC----CC--HHHHHH----HHH
Confidence            58888888899998876 3  4444533   2346899999999999999999998533    23  666544    455


Q ss_pred             cCCCCEEEEeCCCCccc-ccCHHHHHHH
Q psy9711          81 NSPIPVIIYNNTFVTNI-DISVDTLVKL  107 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~-~l~~~~l~~L  107 (198)
                      ..+.|++ .|.-..++. .++.+.+.+|
T Consensus       199 ~~~~P~~-~nv~~~~~~p~~s~~eL~~l  225 (294)
T TIGR02319       199 EIDAPLL-ANMVEGGKTPWLTTKELESI  225 (294)
T ss_pred             hcCCCee-EEEEecCCCCCCCHHHHHHc
Confidence            5567863 222111122 3565555555

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=96.04  E-value=0.56  Score=38.43  Aligned_cols=141  Identities=15%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +|.+.-.++++.+.+.- ++|++.=...+..-.  .=+..+.++++|+|++++.-=.       .|+- +-|+..++..+
T Consensus        69 ~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-------~ee~-~~~~~~~~~~g  140 (259)
T PF00290_consen   69 FTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-------PEES-EELREAAKKHG  140 (259)
T ss_dssp             --HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-------GGGH-HHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-------hHHH-HHHHHHHHHcC
Confidence            46667778888888444 899987666654322  3358899999999999996311       2222 35566788889


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecChh---hHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSAG---YLL  147 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d~---~~~  147 (198)
                      +.++..=.|.     -+.+-+.++++ -+.++.+         +..   +...+.+.+++..  +..++.|.+-   --.
T Consensus       141 l~~I~lv~p~-----t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~  213 (259)
T PF00290_consen  141 LDLIPLVAPT-----TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQA  213 (259)
T ss_dssp             -EEEEEEETT-----S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHH
T ss_pred             CeEEEEECCC-----CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHH
Confidence            9999888774     46788888884 4555554         332   1222333333333  6677777662   234


Q ss_pred             HHhhcCCCeEEeccc
Q psy9711         148 SGLLVGCAGGINALS  162 (198)
Q Consensus       148 ~~l~~G~~G~is~~~  162 (198)
                      ..+..|+||+|-|.+
T Consensus       214 ~~~~~~aDGvIVGSa  228 (259)
T PF00290_consen  214 KKLAAGADGVIVGSA  228 (259)
T ss_dssp             HHHHTTSSEEEESHH
T ss_pred             HHHHccCCEEEECHH
Confidence            455689999999874

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=96.03  E-value=0.73  Score=38.38  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHh---cCCeEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEc--CCCCcC---CCCCHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQE---TKKTIIAGTYCESTRATIDLTQKAAKA---GANAALIL--CPYYFQ---KKMTEDLIYEHF   75 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~---~~~pvi~gv~~~~~~~~i~~a~~a~~~---Gad~v~~~--~P~y~~---~~~~~~~i~~y~   75 (198)
                      ...++..+-++...+.   .+.||++++.+. .++-++.++..++.   |+|++-+-  .|....   ...+++.+.+..
T Consensus        71 ~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~  149 (294)
T cd04741          71 LGLDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYL  149 (294)
T ss_pred             cCHHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHH
Confidence            3455556555544433   268999999988 99999999998886   69998763  455311   112488899999


Q ss_pred             HHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc----CC-C---EEE---------Ee-----------e--C--C---
Q psy9711          76 ISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH----HE-N---IRG---------VK-----------D--T--D---  120 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~----~p-~---i~g---------iK-----------~--s--d---  120 (198)
                      +.+.+.+++||++==.|..     +.+.+.++++    .. .   |+.         |.           .  .  .   
T Consensus       150 ~~v~~~~~iPv~vKl~p~~-----~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~  224 (294)
T cd04741         150 TAVKAAYSIPVGVKTPPYT-----DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAY  224 (294)
T ss_pred             HHHHHhcCCCEEEEeCCCC-----CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchh
Confidence            9999988999998776643     3333344432    21 1   331         11           1  0  0   


Q ss_pred             -----HHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHHH
Q psy9711         121 -----NIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLAK  177 (198)
Q Consensus       121 -----~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~~  177 (198)
                           +..+.++. +..+.++.|+.  |-.  ......+.+|++++..+++.+.  |..+.++.+.++
T Consensus       225 i~~~al~~v~~~~-~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~  291 (294)
T cd04741         225 LHPLALGNVRTFR-RLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELE  291 (294)
T ss_pred             hHHHHHHHHHHHH-HhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHH
Confidence                 01122222 23333455542  222  2456778899999999999874  988888876554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=96.03  E-value=0.72  Score=38.31  Aligned_cols=85  Identities=22%  Similarity=0.273  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEE--cCCCCcC----CCCCHHHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG--ANAALI--LCPYYFQ----KKMTEDLIYEHFISVA   79 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~--~~P~y~~----~~~~~~~i~~y~~~i~   79 (198)
                      ..++..+.++...+..+.|+++++.+.+.++..+.++..+++|  +|++-+  ..|....    ...+++.+.+..+++-
T Consensus        74 g~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr  153 (300)
T TIGR01037        74 GVEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK  153 (300)
T ss_pred             CHHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence            3445444444433222679999998889999999999999874  899888  4565422    1124788889999998


Q ss_pred             ccCCCCEEEEeCC
Q psy9711          80 DNSPIPVIIYNNT   92 (198)
Q Consensus        80 ~~~~~pi~lYn~P   92 (198)
                      +++++||.+==.|
T Consensus       154 ~~~~~pv~vKi~~  166 (300)
T TIGR01037       154 DKTDVPVFAKLSP  166 (300)
T ss_pred             HhcCCCEEEECCC
Confidence            8889999875433

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=96.02  E-value=0.17  Score=42.20  Aligned_cols=92  Identities=21%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHHHHhc-C--CeEEEeCC----CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET-K--KTIIAGTY----CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv~----~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      .+.+|..+-++.++++. +  +-|++=+-    ..+.+++|++++.+.++|||++++-.|.   .  +.+++.+.-+.+.
T Consensus       129 ~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~--~~~ei~~~~~~~~  203 (290)
T TIGR02321       129 VRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---K--TPDEILAFVKSWP  203 (290)
T ss_pred             cCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---C--CHHHHHHHHHhcC
Confidence            58888888888888875 3  34444432    2356999999999999999999995332   2  3777776666552


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                        .++|+++-  |. .+..++.+.+.+|.
T Consensus       204 --~p~pv~~~--~~-~~p~~~~~~l~~lg  227 (290)
T TIGR02321       204 --GKVPLVLV--PT-AYPQLTEADIAALS  227 (290)
T ss_pred             --CCCCeEEe--cC-CCCCCCHHHHHHhc
Confidence              25788743  32 22346777777664

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

Probab=95.95  E-value=0.3  Score=43.43  Aligned_cols=99  Identities=6%  Similarity=-0.076  Sum_probs=65.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||.+....+++.+     +..+ .+.+++.++++.+++++.+++.|+.++|+.+-.+ ..+     ..+..+
T Consensus       208 dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~-G~~-----al~~l~  281 (475)
T CHL00040        208 SQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTG-GFT-----ANTSLA  281 (475)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEecccc-ccc-----hHHHHH
Confidence            345567789988777777766     3344 5678877899999999999999999998864443 332     134444


Q ss_pred             HHHccCCCCEEEEeCCCCcc-------cccCHHHHHHHHc
Q psy9711          77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLVKLAH  109 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L~~  109 (198)
                      +-++..++||..|-.  ..|       .-++.-++.+|.+
T Consensus       282 ~~~~~~~l~IhaHrA--~~ga~~r~~~~Gis~~vl~KL~R  319 (475)
T CHL00040        282 HYCRDNGLLLHIHRA--MHAVIDRQKNHGIHFRVLAKALR  319 (475)
T ss_pred             HHhhhcCceEEeccc--cccccccCccCCCcHHHHHHHHH
Confidence            444456788766533  222       2355566666654

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=95.93  E-value=0.23  Score=40.27  Aligned_cols=146  Identities=12%  Similarity=0.103  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH--HHHHccCC-------
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF--ISVADNSP-------   83 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~--~~i~~~~~-------   83 (198)
                      .++++.+.+.+++||++|-|-.+.+++.+...    .|++++++....+..|. --+++.+.|  +.+.-+.+       
T Consensus        63 ~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viigt~~l~~p~-~~~ei~~~~g~~~iv~slD~~~~~~~  137 (253)
T PRK02083         63 LDVVERVAEQVFIPLTVGGGIRSVEDARRLLR----AGADKVSINSAAVANPE-LISEAADRFGSQCIVVAIDAKRDPEP  137 (253)
T ss_pred             HHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH----cCCCEEEEChhHhhCcH-HHHHHHHHcCCCCEEEEEEeccCCCC
Confidence            45666666655899999888776666655544    69999999887765442 123333333  11222222       


Q ss_pred             CCEEEEeCCCCcccccCHHHH-HHHHcC--CCEE-------EEeeC-CHHHHHHHHhhcCCCCeEEEec-Ch--hhHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTL-VKLAHH--ENIR-------GVKDT-DNIKLANMANQTKDLNFSVFAG-SA--GYLLSG  149 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l-~~L~~~--p~i~-------giK~s-d~~~~~~~~~~~~~~~~~v~~G-~d--~~~~~~  149 (198)
                      -|+-++..-+.....+++..+ .++.+.  ..++       |.+.. |+..+.++.+ ..+-++ +.+| ..  +.+...
T Consensus       138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~-~~~ipv-ia~GGv~s~~d~~~~  215 (253)
T PRK02083        138 GRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD-AVNVPV-IASGGAGNLEHFVEA  215 (253)
T ss_pred             CCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh-hCCCCE-EEECCCCCHHHHHHH
Confidence            234444433223334555444 444433  2222       33333 6777777663 332233 3333 22  235556


Q ss_pred             hh-cCCCeEEecccccc
Q psy9711         150 LL-VGCAGGINALSAVL  165 (198)
Q Consensus       150 l~-~G~~G~is~~~n~~  165 (198)
                      +. .|++|++.|.+-..
T Consensus       216 ~~~~G~~gvivg~al~~  232 (253)
T PRK02083        216 FTEGGADAALAASIFHF  232 (253)
T ss_pred             HHhCCccEEeEhHHHHc
Confidence            65 59999999887443

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=95.93  E-value=0.7  Score=37.36  Aligned_cols=157  Identities=15%  Similarity=0.170  Sum_probs=87.7

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCc-HHHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          14 KIISTLRQETKKTIIAGTYCES-TRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~-~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ++++.+.+..++|++.-+.-+. ..+.-+.++.++++|+|++.+.. |+   .+  .++..+++ ..+...++..++.=+
T Consensus        64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~---e~--~~~~~~~~-~~~~~~Gl~~~~~v~  137 (244)
T PRK13125         64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLI---DY--PDDLEKYV-EIIKNKGLKPVFFTS  137 (244)
T ss_pred             HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCC---Cc--HHHHHHHH-HHHHHcCCCEEEEEC
Confidence            4566665444788754332222 34556678889999999999952 22   11  34554444 444567887777777


Q ss_pred             CCCcccccCHHHHHHHHc-CCCEE--EEeeC-------CHH-HHHHHHhhcCC-CCeEEEecC-h-hhHHHHhhcCCCeE
Q psy9711          92 TFVTNIDISVDTLVKLAH-HENIR--GVKDT-------DNI-KLANMANQTKD-LNFSVFAGS-A-GYLLSGLLVGCAGG  157 (198)
Q Consensus        92 P~~tg~~l~~~~l~~L~~-~p~i~--giK~s-------d~~-~~~~~~~~~~~-~~~~v~~G~-d-~~~~~~l~~G~~G~  157 (198)
                      |.     -+.+.+..+++ .+.++  ++.-.       +.. ++.++. +... ..+.+=.|- . +........|+||+
T Consensus       138 p~-----T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr-~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~v  211 (244)
T PRK13125        138 PK-----FPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVR-NLVGNKYLVVGFGLDSPEDARDALSAGADGV  211 (244)
T ss_pred             CC-----CCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHH-HhcCCCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence            74     25677888774 67766  33221       222 333333 2221 223332333 2 24555578999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      +.|.+     ++ +++   .+++.+++.+..+++
T Consensus       212 vvGSa-----i~-~~~---~~~~~~~~~~~~~~~  236 (244)
T PRK13125        212 VVGTA-----FI-EEL---EKNGVESALNLLKKI  236 (244)
T ss_pred             EECHH-----HH-HHH---HhcCHHHHHHHHHHH
Confidence            99964     11 222   234566655555544

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=95.92  E-value=0.75  Score=37.59  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHHh-cCCeEEEeCCCCcH--H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           7 STEEEKLKIISTLRQE-TKKTIIAGTYCEST--R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~-~~~pvi~gv~~~~~--~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +|.+.-.++++.+.+. .++|++ +-+-.++  + -.-+..+.++++|+|++++..    -|   .++..+ +...++..
T Consensus        69 ~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD----lp---~ee~~~-~~~~~~~~  139 (256)
T TIGR00262        69 MTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD----LP---LEESGD-LVEAAKKH  139 (256)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC----CC---hHHHHH-HHHHHHHC
Confidence            4556667777777765 377865 3333333  1 225678899999999998852    12   455544 44445667


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHc-CC---------CEEEEeeC---CH-HHHHHHHhhcCCCCeEEEecCh--hhH
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAH-HE---------NIRGVKDT---DN-IKLANMANQTKDLNFSVFAGSA--GYL  146 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p---------~i~giK~s---d~-~~~~~~~~~~~~~~~~v~~G~d--~~~  146 (198)
                      ++..++.-.|.     -+.+.+..+++ .+         .+.|.|..   +. ..+.++. +..+..+.+=.|-.  +..
T Consensus       140 gl~~i~lv~P~-----T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr-~~~~~pi~vgfGI~~~e~~  213 (256)
T TIGR00262       140 GVKPIFLVAPN-----ADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK-AYSAKPVLVGFGISKPEQV  213 (256)
T ss_pred             CCcEEEEECCC-----CCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH-hhcCCCEEEeCCCCCHHHH
Confidence            88877666664     24666666664 23         23344432   22 3344433 33333333323332  355


Q ss_pred             HHHhhcCCCeEEeccc
Q psy9711         147 LSGLLVGCAGGINALS  162 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~  162 (198)
                      -.....|+||++.|.+
T Consensus       214 ~~~~~~GADgvVvGSa  229 (256)
T TIGR00262       214 KQAIDAGADGVIVGSA  229 (256)
T ss_pred             HHHHHcCCCEEEECHH
Confidence            6667899999999975

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=95.89  E-value=0.2  Score=41.76  Aligned_cols=55  Identities=15%  Similarity=0.294  Sum_probs=44.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           3 NSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +....+.+.-.++++.+.+.+++||++-++. +.++..+.++.++++|+|++.+..
T Consensus       136 ~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~n  190 (301)
T PRK07259        136 MAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLIN  190 (301)
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEc
Confidence            3444567777888888887668999998874 567899999999999999998753

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=95.87  E-value=0.81  Score=37.59  Aligned_cols=141  Identities=18%  Similarity=0.157  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcH-H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCEST-R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~-~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +|.+.-.++++.+.+..++|++.=...+.. + -.-+..+.++++|+|++++..=    |   .++..+ |...++..++
T Consensus        74 ~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL----P---~ee~~~-~~~~~~~~gi  145 (263)
T CHL00200         74 INLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL----P---YEESDY-LISVCNLYNI  145 (263)
T ss_pred             CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCC----C---HHHHHH-HHHHHHHcCC
Confidence            345555666666654337886543443332 2 2245788999999999998521    1   445444 4445567888


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc-C---------CCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH-H---------ENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLL  147 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~-~---------p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~  147 (198)
                      ..+..=.|.     -+.+-+.++++ .         +.+.|.|..   +...+.+.+++..+  ..+..|.+    +..-
T Consensus       146 ~~I~lv~Pt-----T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~--~Pi~vGFGI~~~e~~~  218 (263)
T CHL00200        146 ELILLIAPT-----SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN--KPIILGFGISTSEQIK  218 (263)
T ss_pred             CEEEEECCC-----CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC--CCEEEECCcCCHHHHH
Confidence            888777775     25667777763 2         445555644   33444434433333  33444543    2455


Q ss_pred             HHhhcCCCeEEeccc
Q psy9711         148 SGLLVGCAGGINALS  162 (198)
Q Consensus       148 ~~l~~G~~G~is~~~  162 (198)
                      .....|+||++.|.+
T Consensus       219 ~~~~~GADGvVVGSa  233 (263)
T CHL00200        219 QIKGWNINGIVIGSA  233 (263)
T ss_pred             HHHhcCCCEEEECHH
Confidence            556789999999975

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.81  E-value=0.86  Score=37.48  Aligned_cols=92  Identities=21%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-------
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-------   89 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-------   89 (198)
                      +.-+|+| ++-.+.+.+++.|+..+++|+..+...      .|+-++.-  .++-++..+++++..++|++--       
T Consensus        27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d~~~~  104 (266)
T PRK13398         27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMDTRDV  104 (266)
T ss_pred             CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCChhhH
Confidence            4567888 455578889999999999999865555      25444422  3555566777777777877632       


Q ss_pred             ----------eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          90 ----------NNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        90 ----------n~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                -+|+++  .-+.+++.++++...-+++|-.
T Consensus       105 ~~l~~~vd~~kIga~~--~~n~~LL~~~a~~gkPV~lk~G  142 (266)
T PRK13398        105 EEVADYADMLQIGSRN--MQNFELLKEVGKTKKPILLKRG  142 (266)
T ss_pred             HHHHHhCCEEEECccc--ccCHHHHHHHhcCCCcEEEeCC
Confidence                      222221  2234456666666666666665

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=95.79  E-value=0.34  Score=41.28  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeCCC-------CcHHHHHHHHHHHHhcC-CCEEEEcCCCCcCC--------C
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGTYC-------ESTRATIDLTQKAAKAG-ANAALILCPYYFQK--------K   65 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv~~-------~~~~~~i~~a~~a~~~G-ad~v~~~~P~y~~~--------~   65 (198)
                      |.+.|.+++..+++..      +++|.+=++.       .+.++++++++..+++| +|.+-+....+...        +
T Consensus       186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~  265 (343)
T cd04734         186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPS  265 (343)
T ss_pred             CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCC
Confidence            4567766666555554      3344433332       46789999999999998 89998864433211        0


Q ss_pred             -C-CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711          66 -M-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA  128 (198)
Q Consensus        66 -~-~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~  128 (198)
                       . .+.-..++.+.+-+.+++||+.      +|.-.+++...++.+...+-++=..     |+....++.
T Consensus       266 ~~~~~~~~~~~~~~ik~~~~ipvi~------~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~  329 (343)
T cd04734         266 MGMPPGPFLPLAARIKQAVDLPVFH------AGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAR  329 (343)
T ss_pred             CCCCcchhHHHHHHHHHHcCCCEEe------eCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence             0 0111245556666777899876      4544578888888866544444333     666666655

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.78  E-value=0.063  Score=42.97  Aligned_cols=64  Identities=11%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             HHHHHHHHhcCCeEEE-e-CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIA-G-TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      +.++.+++..++||++ | ++..+.+++++.++.+.+.|++++.+..-.|..++  +.+..+-++.+.
T Consensus       169 ~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d--p~~~~~~~~~~~  234 (235)
T cd00958         169 ESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD--PVAMLRAISAVV  234 (235)
T ss_pred             HHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC--HHHHHHHHHHHh
Confidence            3445555544778766 3 45568899999999999999999999999888877  888888887764

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=95.76  E-value=0.45  Score=40.35  Aligned_cols=113  Identities=7%  Similarity=0.051  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--------C
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKK--------M   66 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--------~   66 (198)
                      |.+.|.++...+++++      +.||.+=++       +.+.+++++.++..++.|+|.+-+..-.+..+.        .
T Consensus       194 slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~  273 (338)
T cd04733         194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKEST  273 (338)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCc
Confidence            4567776555554444      467766553       457899999999999999999987643322111        0


Q ss_pred             -CHHH-HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHH
Q psy9711          67 -TEDL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLAN  126 (198)
Q Consensus        67 -~~~~-i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~  126 (198)
                       ..+. ..++.+.|.+++++||+.      .|.--+++...++.+..  .++++=-.   |+....+
T Consensus       274 ~~~~~~~~~~~~~ik~~v~iPVi~------~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k  334 (338)
T cd04733         274 IAREAYFLEFAEKIRKVTKTPLMV------TGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK  334 (338)
T ss_pred             cccchhhHHHHHHHHHHcCCCEEE------eCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHH
Confidence             0111 245667777888999887      34344788888887543  44444333   5544443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=95.75  E-value=0.13  Score=43.64  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             CCeEEEeCCCCc--------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCC
Q psy9711          24 KKTIIAGTYCES--------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNT   92 (198)
Q Consensus        24 ~~pvi~gv~~~~--------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P   92 (198)
                      ++|+|+.+++.+        .+...--.+.|.++|||+|.+.--.- ...  +.+.++-..++++.+   ++|+++.-.|
T Consensus       125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~--E~~ml~~l~~i~~ea~~~GlPlv~~~Yp  201 (348)
T PRK09250        125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEE--SRRQIEEISEAFEEAHELGLATVLWSYL  201 (348)
T ss_pred             CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHH--HHHHHHHHHHHHHHHHHhCCCEEEEecc
Confidence            689999876532        13334447889999999999873322 222  666777777777655   7999987666


Q ss_pred             CCccc------ccCHHHH---HHHH-cC-CCEEEEeeC-CHHHHHHH
Q psy9711          93 FVTNI------DISVDTL---VKLA-HH-ENIRGVKDT-DNIKLANM  127 (198)
Q Consensus        93 ~~tg~------~l~~~~l---~~L~-~~-p~i~giK~s-d~~~~~~~  127 (198)
                      .....      .-+++.+   .|++ ++ ..|+=+|.+ |...+.++
T Consensus       202 RG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v  248 (348)
T PRK09250        202 RNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI  248 (348)
T ss_pred             cCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence            42211      1124444   4666 55 489999988 76665554

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.75  E-value=0.36  Score=40.00  Aligned_cols=54  Identities=17%  Similarity=0.335  Sum_probs=42.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      .+.-+++.-.++++.+.+.+++||++-++. +.++..+.++.++++|+|++.+..
T Consensus       134 ~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~n  187 (296)
T cd04740         134 AFGTDPEAVAEIVKAVKKATDVPVIVKLTP-NVTDIVEIARAAEEAGADGLTLIN  187 (296)
T ss_pred             cccCCHHHHHHHHHHHHhccCCCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEEC
Confidence            344566666788888877668999998874 556899999999999999998753

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=95.73  E-value=0.77  Score=36.35  Aligned_cols=119  Identities=10%  Similarity=0.010  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE--
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV--  116 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi--  116 (198)
                      .+.++.+.++|||.+++..|.-..|+  .+++.+..+.+-+..++|++.-.        .+.+.+.++.+. ..++++  
T Consensus        78 ~~~v~~a~~aGad~I~~d~~~~~~p~--~~~~~~~i~~~~~~~~i~vi~~v--------~t~ee~~~a~~~G~d~i~~~~  147 (221)
T PRK01130         78 LKEVDALAAAGADIIALDATLRPRPD--GETLAELVKRIKEYPGQLLMADC--------STLEEGLAAQKLGFDFIGTTL  147 (221)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCC--CCCHHHHHHHHHhCCCCeEEEeC--------CCHHHHHHHHHcCCCEEEcCC
Confidence            35678999999998887766543332  13333444433322568877521        245555555543 233333  


Q ss_pred             --------eeC--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccchHHH
Q psy9711         117 --------KDT--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGGPI  169 (198)
Q Consensus       117 --------K~s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~~~  169 (198)
                              +..  +...+.++. +..+-.+..-.|..  +.+...+..|++|++.|.+-+-|+..
T Consensus       148 ~g~t~~~~~~~~~~~~~i~~i~-~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~  211 (221)
T PRK01130        148 SGYTEETKKPEEPDFALLKELL-KAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEI  211 (221)
T ss_pred             ceeecCCCCCCCcCHHHHHHHH-HhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHH
Confidence                    112  455555555 33333343444542  35667788999999998765545433

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=95.72  E-value=0.21  Score=41.97  Aligned_cols=111  Identities=12%  Similarity=0.043  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEe--CCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCCCCHHHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAG--TYCESTRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~g--v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~~~~~~i~~y~~~i~   79 (198)
                      .++--.++++.+++.+  ++||.+=  +|..+.+++++.++.++++|+|.+.+.+-.    |..+   .-. .++.+.|.
T Consensus       115 ~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~---~~~-~~~i~~ik  190 (312)
T PRK10550        115 DPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAE---HIN-WQAIGEIR  190 (312)
T ss_pred             CHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCC---ccc-HHHHHHHH
Confidence            4455566777777766  4888775  455555778999999999999999997643    2221   112 26788888


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA  128 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~  128 (198)
                      +++++||+. |     |--.+++...++.+...+-|+=..     |+.-+.++.
T Consensus       191 ~~~~iPVi~-n-----GdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~  238 (312)
T PRK10550        191 QRLTIPVIA-N-----GEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVK  238 (312)
T ss_pred             hhcCCcEEE-e-----CCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhh
Confidence            888999765 3     545689999998877777777666     666666543

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=95.69  E-value=0.15  Score=42.10  Aligned_cols=89  Identities=25%  Similarity=0.252  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHHHHHhc-CCe--EEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           7 STEEEKLKIISTLRQET-KKT--IIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~p--vi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .+.+|-.+=++.++++. +.+  +++-+   ....++++|++++.+.++|||++..  |..   + +.    +.|+.+++
T Consensus       130 ~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al---~-~~----e~i~~f~~  199 (289)
T COG2513         130 VSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP--EAL---T-DL----EEIRAFAE  199 (289)
T ss_pred             CCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccC---C-CH----HHHHHHHH
Confidence            46788888899998887 323  33321   3334899999999999999998764  321   1 24    44556666


Q ss_pred             cCC--CCEEEEeCCCCcccccCHHHHHHH
Q psy9711          81 NSP--IPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        81 ~~~--~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      +++  +|+-+--.+. | ..++.+.|.++
T Consensus       200 av~~pl~~N~t~~g~-t-p~~~~~~L~~~  226 (289)
T COG2513         200 AVPVPLPANITEFGK-T-PLLTVAELAEL  226 (289)
T ss_pred             hcCCCeeeEeeccCC-C-CCcCHHHHHhc
Confidence            665  5554444432 1 24666666665

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=95.69  E-value=0.57  Score=37.93  Aligned_cols=128  Identities=14%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             HHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-c--CC
Q psy9711          42 LTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H--HE  111 (198)
Q Consensus        42 ~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~--~p  111 (198)
                      -++.++++|++++.+..-.    +..|+   .+-+++..+-+.|+..+++| ++-|.|.-.|   +++.+.+.. +  --
T Consensus        21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G~g---~~~~~~~~v~~~~~~   96 (243)
T cd00377          21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADTGYG---NALNVARTVRELEEA   96 (243)
T ss_pred             HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCCCCC---CHHHHHHHHHHHHHc
Confidence            3566677799999987522    11121   35899999999999999999 6778875333   334443333 2  26


Q ss_pred             CEEEEeeC-----------------CH----HHHHHHHhhcCC-CCeEEEecChhhHH-------------HHhhcCCCe
Q psy9711         112 NIRGVKDT-----------------DN----IKLANMANQTKD-LNFSVFAGSAGYLL-------------SGLLVGCAG  156 (198)
Q Consensus       112 ~i~giK~s-----------------d~----~~~~~~~~~~~~-~~~~v~~G~d~~~~-------------~~l~~G~~G  156 (198)
                      .+.|+|-+                 +.    .+++.......+ ++|.|..+.|....             ....+|+|+
T Consensus        97 G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~  176 (243)
T cd00377          97 GAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADG  176 (243)
T ss_pred             CCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCE
Confidence            89999983                 22    223333322223 58999988554322             235689998


Q ss_pred             EEecccccchHHHHHHHH
Q psy9711         157 GINALSAVLGGPICELYD  174 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~  174 (198)
                      ++.-... -++.+.++.+
T Consensus       177 v~v~~~~-~~~~~~~~~~  193 (243)
T cd00377         177 IFVEGLK-DPEEIRAFAE  193 (243)
T ss_pred             EEeCCCC-CHHHHHHHHh
Confidence            8754332 3444444444

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=95.68  E-value=0.81  Score=36.21  Aligned_cols=119  Identities=12%  Similarity=0.058  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEEe
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVK  117 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK  117 (198)
                      ..++++.+.++|+|.+++..+....|.  .+.+.++++.+.+..++|++. .       ..+++...++.+. ..++++.
T Consensus        81 ~~~~~~~a~~aGad~I~~~~~~~~~p~--~~~~~~~i~~~~~~g~~~iiv-~-------v~t~~ea~~a~~~G~d~i~~~  150 (219)
T cd04729          81 TIEEVDALAAAGADIIALDATDRPRPD--GETLAELIKRIHEEYNCLLMA-D-------ISTLEEALNAAKLGFDIIGTT  150 (219)
T ss_pred             CHHHHHHHHHcCCCEEEEeCCCCCCCC--CcCHHHHHHHHHHHhCCeEEE-E-------CCCHHHHHHHHHcCCCEEEcc
Confidence            356889999999998888765543333  335556666665544688776 1       1245555555543 2333332


Q ss_pred             ----------eC--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccchHH
Q psy9711         118 ----------DT--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGGP  168 (198)
Q Consensus       118 ----------~s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~~  168 (198)
                                ..  +...+.++. +..+-.+..-.|-.  +.....+..|++|++.|.+-+-++.
T Consensus       151 ~~g~t~~~~~~~~~~~~~l~~i~-~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~  214 (219)
T cd04729         151 LSGYTEETAKTEDPDFELLKELR-KALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEH  214 (219)
T ss_pred             CccccccccCCCCCCHHHHHHHH-HhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHh
Confidence                      11  445555554 23333343344542  3566778899999998876443443

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=95.65  E-value=0.93  Score=38.32  Aligned_cols=144  Identities=11%  Similarity=0.077  Sum_probs=87.9

Q ss_pred             CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEE--cCCCCcC--CCCCHHHHHHHHHHHHccCC-----CCEE
Q psy9711          24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYEHFISVADNSP-----IPVI   87 (198)
Q Consensus        24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~--~~P~y~~--~~~~~~~i~~y~~~i~~~~~-----~pi~   87 (198)
                      +.|+++.++.++       .+|-.+.++.+.+ ++|++-+  ..|.+..  ...+++.+.+..+.+.+.++     +||+
T Consensus       128 ~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~  206 (327)
T cd04738         128 GGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLL  206 (327)
T ss_pred             CCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeE
Confidence            799999998765       4666777777665 4898887  5666421  11247888888899888775     8998


Q ss_pred             EEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-C----------------------------HHHHHHHHhhcCCCC
Q psy9711          88 IYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-D----------------------------NIKLANMANQTKDLN  135 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-d----------------------------~~~~~~~~~~~~~~~  135 (198)
                      +==.|.     ++.+.+.+++   +--++.||+-+ .                            +..+.++. +..+++
T Consensus       207 vKl~~~-----~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~-~~~~~~  280 (327)
T cd04738         207 VKIAPD-----LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY-KLTGGK  280 (327)
T ss_pred             EEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH-HHhCCC
Confidence            765553     3323333333   22356666533 1                            12222222 333334


Q ss_pred             eEEE-ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHH
Q psy9711         136 FSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD  174 (198)
Q Consensus       136 ~~v~-~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~  174 (198)
                      +.|. +| ..  ......+..|++++..+.+.+.  |..+.++.+
T Consensus       281 ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~  325 (327)
T cd04738         281 IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR  325 (327)
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence            5554 23 22  2456677889999988888754  877777644

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=95.65  E-value=0.21  Score=42.70  Aligned_cols=115  Identities=14%  Similarity=0.057  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcC-----CCCcCC-CCCH
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGT-------YCESTRATIDLTQKAAKAGANAALILC-----PYYFQK-KMTE   68 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~-----P~y~~~-~~~~   68 (198)
                      |.+.|.+++..+++++      +++|.+=+       +..+.++++++++..+++|+|.+-++.     |..... ...+
T Consensus       182 slenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~  261 (353)
T cd02930         182 SFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPR  261 (353)
T ss_pred             CHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCc
Confidence            3455665555555444      34554222       235789999999999999999998842     211100 0012


Q ss_pred             HHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          69 DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        69 ~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      .....+.+.|.+.+++||+.      .|.-.+++...++.+..  .++++=-.   |+....++.
T Consensus       262 ~~~~~~~~~ik~~v~iPVi~------~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~  320 (353)
T cd02930         262 GAFAWATAKLKRAVDIPVIA------SNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAA  320 (353)
T ss_pred             hhhHHHHHHHHHhCCCCEEE------cCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHH
Confidence            33456678888889999887      45556889899888644  33333322   666666655

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PLN02433 uroporphyrinogen decarboxylase

Probab=95.56  E-value=0.66  Score=39.48  Aligned_cols=127  Identities=20%  Similarity=0.238  Sum_probs=78.7

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH----HHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF----ISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~----~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +++.++...++||+.+.+.-|.-...+  +++..+|.    ++|.+..     +.|+++|..    |..   ..+..+++
T Consensus       181 ~~~~~~~~ieaGa~~i~i~d~~~~~ls--p~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c----G~~---~~~~~~~~  251 (345)
T PLN02433        181 VIEYVDYQIDAGAQVVQIFDSWAGHLS--PVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN----GSG---GLLERLAG  251 (345)
T ss_pred             HHHHHHHHHHcCCCEEEEecCccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC----CCH---HHHHHHHh
Confidence            356666667899999998877544444  77777554    6777665     357787763    332   56778887


Q ss_pred             CC-CEEEEeeC-CHHHHHHHHhhcCCCCeE--------EEecChhhH----HHHhh-cCCCeEEecccccch-----HHH
Q psy9711         110 HE-NIRGVKDT-DNIKLANMANQTKDLNFS--------VFAGSAGYL----LSGLL-VGCAGGINALSAVLG-----GPI  169 (198)
Q Consensus       110 ~p-~i~giK~s-d~~~~~~~~~~~~~~~~~--------v~~G~d~~~----~~~l~-~G~~G~is~~~n~~P-----~~~  169 (198)
                      .+ +++++=.. |+....+.+    +++..        ++.|..+.+    ...+. .|..|+|.++++-+|     +-+
T Consensus       252 ~~~~~i~~d~~~dl~e~~~~~----g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi  327 (345)
T PLN02433        252 TGVDVIGLDWTVDMADARRRL----GSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENV  327 (345)
T ss_pred             cCCCEEEcCCCCCHHHHHHHh----CCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHH
Confidence            54 78887666 887766554    22222        334433311    22233 355678877776543     777


Q ss_pred             HHHHHHHHc
Q psy9711         170 CELYDLAKA  178 (198)
Q Consensus       170 ~~l~~~~~~  178 (198)
                      ..+.++.++
T Consensus       328 ~a~v~av~~  336 (345)
T PLN02433        328 AHFFDVARE  336 (345)
T ss_pred             HHHHHHHHH
Confidence            777777765

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=95.55  E-value=0.83  Score=38.66  Aligned_cols=143  Identities=16%  Similarity=0.190  Sum_probs=83.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IP   85 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~p   85 (198)
                      ++.+|..+.++.+.+  +..+.+.++.  ..+..++++.+.+.|++.+.+....   .+  .+...+..+.+-+..+ +|
T Consensus        67 ~~~~~~~~~i~~vk~--~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~~---G~--~~~~~~~i~~ik~~~p~v~  137 (325)
T cd00381          67 MSIEEQAEEVRKVKG--RLLVGAAVGT--REDDKERAEALVEAGVDVIVIDSAH---GH--SVYVIEMIKFIKKKYPNVD  137 (325)
T ss_pred             CCHHHHHHHHHHhcc--CceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECCC---CC--cHHHHHHHHHHHHHCCCce
Confidence            567777666665542  2333333332  4677889999999999988875432   11  4455666666666654 88


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--h
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--A  143 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d  143 (198)
                      |+.       |...+++...++.+. .+-+||-.                  ++..+..+.+....-++.|+.  |.  .
T Consensus       138 Vi~-------G~v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~  209 (325)
T cd00381         138 VIA-------GNVVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTS  209 (325)
T ss_pred             EEE-------CCCCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCH
Confidence            887       445778888888753 22233310                  122222332111112455664  33  2


Q ss_pred             hhHHHHhhcCCCeEEecccccch
Q psy9711         144 GYLLSGLLVGCAGGINALSAVLG  166 (198)
Q Consensus       144 ~~~~~~l~~G~~G~is~~~n~~P  166 (198)
                      ..+..++.+|++|++.|..-...
T Consensus       210 ~di~kAla~GA~~VmiGt~fa~t  232 (325)
T cd00381         210 GDIVKALAAGADAVMLGSLLAGT  232 (325)
T ss_pred             HHHHHHHHcCCCEEEecchhccc
Confidence            45778899999999987764443

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>cd03307 Mta_CmuA_like MtaA_CmuA_like family

Probab=95.53  E-value=1.2  Score=37.35  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccCC-CCEEEEeCCCCcccccCHHHHHHHHcCC-C
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHE-N  112 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p-~  112 (198)
                      .++.++...++|||++.+..|.-...=.+++...    .|++.+.+... .|+++|..    |.  +...+..+.+.+ +
T Consensus       173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c----G~--~~~~l~~~~~~g~d  246 (326)
T cd03307         173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC----GN--TTPILEYIAQCGFD  246 (326)
T ss_pred             HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC----CC--ChhHHHHHHHcCCC
Confidence            3567777778999999998886443311377776    45578888775 48887764    22  234566777643 5


Q ss_pred             EEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh
Q psy9711         113 IRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG  144 (198)
Q Consensus       113 i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~  144 (198)
                      +..+=.. |+....+.+    +++..+..+.|.
T Consensus       247 ~~~~d~~~dl~e~~~~~----g~~~~i~Gnidp  275 (326)
T cd03307         247 GISVDEKVDVKTAKEIV----GGRAALIGNVSP  275 (326)
T ss_pred             eecccccCCHHHHHHHc----CCceEEEeCCCh
Confidence            6555444 776654433    445555555544

MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=95.51  E-value=0.81  Score=36.15  Aligned_cols=152  Identities=18%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++.++..+.++.+.+..+ .+++|+|+-.+.+   .++.+.++||+.+  ++|.+      ..++.++-    ...++|
T Consensus        40 t~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~---~a~~a~~aGA~Fi--vsP~~------~~~v~~~~----~~~~i~  103 (204)
T TIGR01182        40 TLRTPVALDAIRLLRKEVP-DALIGAGTVLNPE---QLRQAVDAGAQFI--VSPGL------TPELAKHA----QDHGIP  103 (204)
T ss_pred             eCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHH---HHHHHHHcCCCEE--ECCCC------CHHHHHHH----HHcCCc
Confidence            3566777788888877652 2667777665554   4677788999987  45654      44566553    344565


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C----HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCe
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d----~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G  156 (198)
                      ++       .|. ++|..+.+-.+. ...-+|.=  +    +..+..+. .-. |++.++  .|-+ +.+.+.+.+|+.+
T Consensus       104 ~i-------PG~-~TptEi~~A~~~-Ga~~vKlFPA~~~GG~~yikal~-~pl-p~i~~~ptGGV~~~N~~~~l~aGa~~  172 (204)
T TIGR01182       104 II-------PGV-ATPSEIMLALEL-GITALKLFPAEVSGGVKMLKALA-GPF-PQVRFCPTGGINLANVRDYLAAPNVA  172 (204)
T ss_pred             EE-------CCC-CCHHHHHHHHHC-CCCEEEECCchhcCCHHHHHHHh-ccC-CCCcEEecCCCCHHHHHHHHhCCCEE
Confidence            54       344 444444433322 33445654  2    44455443 222 555555  3444 3577888999998


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      +..|. +++|+.      +..++|+++..+.-+++
T Consensus       173 vg~Gs-~L~~~~------~~~~~~~~~i~~~a~~~  200 (204)
T TIGR01182       173 CGGGS-WLVPKD------LIAAGDWDEITRLAREA  200 (204)
T ss_pred             EEECh-hhcCch------hhccccHHHHHHHHHHH
Confidence            87664 555532      24567887776655554

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=95.51  E-value=0.34  Score=41.24  Aligned_cols=112  Identities=8%  Similarity=0.035  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHHHhc----CC-eEEEeCC----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           8 TEEEKLKIISTLRQET----KK-TIIAGTY----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~----~~-pvi~gv~----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |.+-|.+++..+++++    +. +|.+=++          +.+.+++++.++.+++.|+|.+-+....+....  +.-..
T Consensus       197 slenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~  274 (338)
T cd02933         197 SIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPP  274 (338)
T ss_pred             cHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccch
Confidence            3566776666666665    22 5544333          246799999999999999999999766544322  33344


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      ++.+.|-+.+++||+.-     .++  +++...++.+..  .+|++==.   |+....++.
T Consensus       275 ~~~~~ik~~~~ipvi~~-----G~i--~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~  328 (338)
T cd02933         275 DFLDFLRKAFKGPLIAA-----GGY--DAESAEAALADGKADLVAFGRPFIANPDLVERLK  328 (338)
T ss_pred             HHHHHHHHHcCCCEEEE-----CCC--CHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHh
Confidence            56666777789999882     233  388888888654  44444333   776666654

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=95.48  E-value=0.18  Score=42.59  Aligned_cols=115  Identities=12%  Similarity=0.057  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEE--eCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIA--GTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~--gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      .-+++.-.++++.+++.+++||.+  ..|. .+..+++++++.+++.|+|++.+.+-.-... .+...-.++.++|.+++
T Consensus       115 l~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~-~~G~a~~~~i~~ik~~~  193 (321)
T PRK10415        115 LQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL-FNGEAEYDSIRAVKQKV  193 (321)
T ss_pred             hcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccc-cCCCcChHHHHHHHHhc
Confidence            335666777888887766666654  2232 2445889999999999999998875321100 00111247888898889


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM  127 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~  127 (198)
                      ++||+.      .|--.+++...++.+..++.|+=-+     |+.-+.++
T Consensus       194 ~iPVI~------nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~  237 (321)
T PRK10415        194 SIPVIA------NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI  237 (321)
T ss_pred             CCcEEE------eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHH
Confidence            999775      4555688889888876666666665     55555444

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=95.46  E-value=0.86  Score=38.84  Aligned_cols=156  Identities=11%  Similarity=0.056  Sum_probs=91.8

Q ss_pred             HHHHHHHHh-cCCeEEEeCCCC-------cHHHHHHHHHHHHhcCCCEEEEc--CCCCc--CCCCCHHHHHHHHHHHHcc
Q psy9711          14 KIISTLRQE-TKKTIIAGTYCE-------STRATIDLTQKAAKAGANAALIL--CPYYF--QKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        14 ~l~~~~~~~-~~~pvi~gv~~~-------~~~~~i~~a~~a~~~Gad~v~~~--~P~y~--~~~~~~~~i~~y~~~i~~~   81 (198)
                      ++++...+. .++||++.++.+       +.+|-.+.++.+.+ ++|++.+-  .|..-  ....+++.+.+..++|-+.
T Consensus       126 ~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~  204 (344)
T PRK05286        126 ALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA  204 (344)
T ss_pred             HHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence            334433333 289999999765       56788888888766 69998764  45431  1112478888889999888


Q ss_pred             CC-----CCEEEEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-C----------------------------HHHH
Q psy9711          82 SP-----IPVIIYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-D----------------------------NIKL  124 (198)
Q Consensus        82 ~~-----~pi~lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-d----------------------------~~~~  124 (198)
                      ++     +||++==.|.     ++.+.+.+++   +--++.|+.-+ .                            +..+
T Consensus       205 ~~~~~~~~PV~vKlsp~-----~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v  279 (344)
T PRK05286        205 QAELHGYVPLLVKIAPD-----LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVI  279 (344)
T ss_pred             HhccccCCceEEEeCCC-----CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHH
Confidence            86     9999866554     3332233332   22234444433 1                            0112


Q ss_pred             HHHHhhcCCCCeEEE-ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         125 ANMANQTKDLNFSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       125 ~~~~~~~~~~~~~v~-~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      .++. +..++++.|+ +| ..  +.....+..|++++..+.+.+.  |.++.++.+.+
T Consensus       280 ~~l~-~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L  336 (344)
T PRK05286        280 RRLY-KELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGL  336 (344)
T ss_pred             HHHH-HHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence            2222 2333345554 22 22  2456677899999988888754  88877776543

>PLN02591 tryptophan synthase

Probab=95.45  E-value=1.2  Score=36.41  Aligned_cols=141  Identities=11%  Similarity=0.084  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcH-H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCEST-R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~-~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +|.+.-.++++.+.+..++|++.=...+.. + -.=+..+.++++|+|++++..     ..  .++..+|. ..++..++
T Consensus        61 ~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipD-----LP--~ee~~~~~-~~~~~~gl  132 (250)
T PLN02591         61 TTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPD-----LP--LEETEALR-AEAAKNGI  132 (250)
T ss_pred             CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCC-----CC--HHHHHHHH-HHHHHcCC
Confidence            455566667776664447886544444332 2 234568889999999999852     22  55555544 45567898


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc-CCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSA----GYLL  147 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~  147 (198)
                      ..+..=.|.     .+.+-++++++ -+.++.+         +..   +...+.+.+++.  .+..++.|.+    +...
T Consensus       133 ~~I~lv~Pt-----t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~  205 (250)
T PLN02591        133 ELVLLTTPT-----TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAK  205 (250)
T ss_pred             eEEEEeCCC-----CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHH
Confidence            888877774     35666777774 3444433         322   333323333232  4566777765    2455


Q ss_pred             HHhhcCCCeEEeccc
Q psy9711         148 SGLLVGCAGGINALS  162 (198)
Q Consensus       148 ~~l~~G~~G~is~~~  162 (198)
                      .....|+||++.|.+
T Consensus       206 ~~~~~GADGvIVGSa  220 (250)
T PLN02591        206 QIAGWGADGVIVGSA  220 (250)
T ss_pred             HHHhcCCCEEEECHH
Confidence            667889999999975

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=95.42  E-value=0.24  Score=41.69  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEeCC--C-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQETKKTIIAGTY--C-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~~~pvi~gv~--~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      ++--.++++.+++.+++||.+-+.  . .+..+.++.++.+++.|+|++.+....-.. ..+.....++.+.|.+.+++|
T Consensus       116 ~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~-~~~~~~~~~~i~~i~~~~~ip  194 (319)
T TIGR00737       116 PDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ-GYSGEANWDIIARVKQAVRIP  194 (319)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccc-cCCCchhHHHHHHHHHcCCCc
Confidence            444456677766655788877542  1 223467899999999999999886432110 001223468889999999999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~  127 (198)
                      |+.      .|---+++...++.+.....|+=..     |+..+.++
T Consensus       195 vi~------nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~  235 (319)
T TIGR00737       195 VIG------NGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQI  235 (319)
T ss_pred             EEE------eCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence            875      3455688888888865544444444     65544444

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=95.37  E-value=1.4  Score=36.78  Aligned_cols=126  Identities=16%  Similarity=0.176  Sum_probs=77.5

Q ss_pred             CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccC
Q psy9711          24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAALIL--CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS  100 (198)
Q Consensus        24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~  100 (198)
                      ..|+++++... +.+...++++.+.+.|++++.+.  +|.-  ..  . ...+..+.+.+.+++||++=..       ++
T Consensus       115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~--~~--~-~~~~~i~~l~~~~~~pvivK~v-------~s  182 (299)
T cd02809         115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL--GR--R-LTWDDLAWLRSQWKGPLILKGI-------LT  182 (299)
T ss_pred             CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC--CC--C-CCHHHHHHHHHhcCCCEEEeec-------CC
Confidence            45777776543 67888888899999999998874  3431  11  1 2335677788888899998642       56


Q ss_pred             HHHHHHHHcCC-CEEEE-------eeC---CHHHHHHHHhhcCCCCeEEEe-cC---hhhHHHHhhcCCCeEEeccc
Q psy9711         101 VDTLVKLAHHE-NIRGV-------KDT---DNIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       101 ~~~l~~L~~~p-~i~gi-------K~s---d~~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~is~~~  162 (198)
                      ++...++.+.. ..+.+       .+.   ++..+.++. +..++++.|+. |.   ......++.+|++|+..+..
T Consensus       183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~-~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~  258 (299)
T cd02809         183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIV-AAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRP  258 (299)
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHH
Confidence            77777776532 22222       111   233344443 22333455543 31   23467788999999998874

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=95.36  E-value=0.53  Score=40.71  Aligned_cols=115  Identities=10%  Similarity=0.084  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeCC---------------------CCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGTY---------------------CESTRATIDLTQKAAKAGANAALILCPY   60 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv~---------------------~~~~~~~i~~a~~a~~~Gad~v~~~~P~   60 (198)
                      |.+.|.+++..+++++      +.||.+=++                     +.+.++++++++..+++|+|.+-+....
T Consensus       196 slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~  275 (382)
T cd02931         196 SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS  275 (382)
T ss_pred             CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence            5678887777776666      335554333                     3467999999999999999999997543


Q ss_pred             Cc-----CCCC-CHHH-HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          61 YF-----QKKM-TEDL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        61 y~-----~~~~-~~~~-i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      +.     .+.. .+++ ...+-+.+.+.+++||+.      +|.--+++...++.+.  -.++++=-.   |+....++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~------~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~  349 (382)
T cd02931         276 YDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM------AGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR  349 (382)
T ss_pred             CcccccccCCccCCcchhHHHHHHHHHHCCCCEEE------eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHH
Confidence            21     1110 0122 234446666777899886      4444588888888753  356665444   777777765

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=95.32  E-value=0.95  Score=38.50  Aligned_cols=63  Identities=22%  Similarity=0.366  Sum_probs=40.7

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEE------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      +..+|+| ++-.+.+.+++.|+..+++|++.+--      ..||-++.-  .++-++++++.++.+++|++-
T Consensus        93 ~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~t  162 (335)
T PRK08673         93 KPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVT  162 (335)
T ss_pred             ceEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEE
Confidence            3556777 44457888999999999999983221      123333321  344455777777778888764

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=95.29  E-value=0.22  Score=40.82  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCC---CCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711          24 KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQK---KMTEDLIYEHFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        24 ~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~---~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      +.|+ +..+.+..      .|+.++++|+|++++....    +..+   ..|-++++.|-+.|++.++.|+++=|.|. +
T Consensus        14 g~~i~m~tayD~~------sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf-~   86 (263)
T TIGR00222        14 EEKIVAITAYDYS------FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPF-M   86 (263)
T ss_pred             CCcEEEEeccCHH------HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCc-C
Confidence            3444 45555532      4677788999999986422    2221   14699999999999999999999999996 5


Q ss_pred             ccccCHHHH----HHHHcCCCEEEEeeC
Q psy9711          96 NIDISVDTL----VKLAHHENIRGVKDT  119 (198)
Q Consensus        96 g~~l~~~~l----~~L~~~p~i~giK~s  119 (198)
                      ++. +++..    .+|.+.-+..|+|.+
T Consensus        87 sy~-~~e~a~~na~rl~~eaGa~aVkiE  113 (263)
T TIGR00222        87 SYA-TPEQALKNAARVMQETGANAVKLE  113 (263)
T ss_pred             CCC-CHHHHHHHHHHHHHHhCCeEEEEc
Confidence            665 45543    455555689999999

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=95.24  E-value=0.21  Score=41.42  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEE---EeCC---------CCcHHHHHHHHHHH-HhcCCCEEEE--cCCCCcCCCC
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTII---AGTY---------CESTRATIDLTQKA-AKAGANAALI--LCPYYFQKKM   66 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~---------~~~~~~~i~~a~~a-~~~Gad~v~~--~~P~y~~~~~   66 (198)
                      ..++.+|..++.+.+++.+   +++|=   .++|         +.++. ..+.++.+ ++.|+|.+-+  .+.+-..+. 
T Consensus       106 s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t-~~eea~~f~~~tg~DyLAvaiG~~hg~~~~-  183 (281)
T PRK06806        106 SHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLT-STTEAKRFAEETDVDALAVAIGNAHGMYNG-  183 (281)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeC-CHHHHHHHHHhhCCCEEEEccCCCCCCCCC-
Confidence            4678999999999999888   66652   2344         11122 23344444 4679999999  333322221 


Q ss_pred             CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          67 TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        67 ~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      .+.==++.+++|.+.+++|++++=     |..++++.+.++.+.. +.+|=..
T Consensus       184 ~~~l~~~~L~~i~~~~~iPlV~hG-----~SGI~~e~~~~~i~~G-~~kinv~  230 (281)
T PRK06806        184 DPNLRFDRLQEINDVVHIPLVLHG-----GSGISPEDFKKCIQHG-IRKINVA  230 (281)
T ss_pred             CCccCHHHHHHHHHhcCCCEEEEC-----CCCCCHHHHHHHHHcC-CcEEEEh
Confidence            133334678888888899998853     3457888888887543 4444333

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=95.24  E-value=0.21  Score=41.00  Aligned_cols=86  Identities=17%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCccccc
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI   99 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l   99 (198)
                      ++.++.+..      -++.++++|+|++++....    +..++   .|-+++..|.+.|++.++.|.++=|.|. .++..
T Consensus        18 ~~~tayD~~------sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pf-g~y~~   90 (264)
T PRK00311         18 VMLTAYDYP------FAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPF-GSYQA   90 (264)
T ss_pred             EEEeCCCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCC-CCccC
Confidence            455666543      3566778899999865221    11121   3699999999999999999988889984 45556


Q ss_pred             CHHH----HHHHHcCCCEEEEeeC
Q psy9711         100 SVDT----LVKLAHHENIRGVKDT  119 (198)
Q Consensus       100 ~~~~----l~~L~~~p~i~giK~s  119 (198)
                      +++.    ..++.+.-.+.|+|.+
T Consensus        91 ~~~~av~~a~r~~~~aGa~aVkiE  114 (264)
T PRK00311         91 SPEQALRNAGRLMKEAGAHAVKLE  114 (264)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEEEc
Confidence            6654    3455555689999999

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=95.22  E-value=0.41  Score=39.46  Aligned_cols=51  Identities=12%  Similarity=0.216  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCE-STRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +.+.-.++++.+.+.+++||++.++.. +.++..+.++.++++|+|++.+..
T Consensus       146 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~  197 (289)
T cd02810         146 DPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN  197 (289)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence            345566778887766689999987753 456899999999999999999864

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.17  E-value=1.4  Score=35.96  Aligned_cols=134  Identities=14%  Similarity=0.095  Sum_probs=81.4

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.++.+.+.+++||+.  -+.-+..-  ++..+.++|||++.+..-..   +  ++.+.+.++... ..++-+++-=   
T Consensus       101 ~~l~~v~~~v~iPvl~--kdfi~~~~--qi~~a~~~GAD~VlLi~~~l---~--~~~l~~li~~a~-~lGl~~lvev---  167 (260)
T PRK00278        101 EYLRAARAAVSLPVLR--KDFIIDPY--QIYEARAAGADAILLIVAAL---D--DEQLKELLDYAH-SLGLDVLVEV---  167 (260)
T ss_pred             HHHHHHHHhcCCCEEe--eeecCCHH--HHHHHHHcCCCEEEEEeccC---C--HHHHHHHHHHHH-HcCCeEEEEe---
Confidence            4455555555899985  33333333  68889999999999997652   2  556666665554 4577766532   


Q ss_pred             CcccccCHHHHHHHHc-CCCEEEEee----C---CHHHHHHHHhhcCCCC-eEEE-ecCh--hhHHHHhhcCCCeEEecc
Q psy9711          94 VTNIDISVDTLVKLAH-HENIRGVKD----T---DNIKLANMANQTKDLN-FSVF-AGSA--GYLLSGLLVGCAGGINAL  161 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~-~p~i~giK~----s---d~~~~~~~~~~~~~~~-~~v~-~G~d--~~~~~~l~~G~~G~is~~  161 (198)
                           -+.+.+.+..+ -+.++|+-.    +   |+....++.. ..+.+ ..|- +|..  +.....+..|++|++-|.
T Consensus       168 -----h~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~-~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGs  241 (260)
T PRK00278        168 -----HDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAP-LIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGE  241 (260)
T ss_pred             -----CCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHH-hCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECH
Confidence                 12334455444 467899865    2   5666666663 33333 3332 3432  355667789999999887


Q ss_pred             cccch
Q psy9711         162 SAVLG  166 (198)
Q Consensus       162 ~n~~P  166 (198)
                      +-.-+
T Consensus       242 aI~~~  246 (260)
T PRK00278        242 SLMRA  246 (260)
T ss_pred             HHcCC
Confidence            74433

>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed

Probab=95.14  E-value=0.41  Score=42.46  Aligned_cols=171  Identities=10%  Similarity=0.012  Sum_probs=96.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ......+||......+++.+     + +-..+.+++.++++.+++++.+.+.|+.++|+.+-. ...+     .....++
T Consensus       202 q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~-~G~~-----~l~~l~~  275 (468)
T PRK04208        202 QPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVT-AGWT-----ALQSLRE  275 (468)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeccc-cccH-----HHHHHHH
Confidence            34566788888766666655     3 334668888779999999999999999999986443 3332     2444555


Q ss_pred             HHccCCCCEEEEeCCCC--c---ccccCHHHHH---HHH--c---CCCEEEEeeC-CHH---HHHHHHhhc---------
Q psy9711          78 VADNSPIPVIIYNNTFV--T---NIDISVDTLV---KLA--H---HENIRGVKDT-DNI---KLANMANQT---------  131 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~--t---g~~l~~~~l~---~L~--~---~p~i~giK~s-d~~---~~~~~~~~~---------  131 (198)
                      -+...++||..|-.-..  +   ...++..++.   ||+  +   .|++ +=|.. +..   ++.+.++..         
T Consensus       276 ~~~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~  354 (468)
T PRK04208        276 WCRDNGLALHAHRAMHAAFTRNPNHGISFRVLAKLLRLIGVDHLHTGTV-VGKLEGDRAEVLGYYDILREDFVPEDRSRG  354 (468)
T ss_pred             hhhcCCcEEEecCCcccccccCcCCCCCHHHHHHHHHHcCCCccccCCc-cCCccCCHHHHHHHHHHHhhhhcccccccc
Confidence            54456788866543110  0   1134444555   444  2   2666 44555 333   333322110         


Q ss_pred             ---------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCCH
Q psy9711         132 ---------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGKW  181 (198)
Q Consensus       132 ---------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd~  181 (198)
                               ..+-|.+.+|.-+  .+...+ ..|-|-++...+.++  |       +.+++-|+++.+|.-
T Consensus       355 ~~~~q~~~~~k~~~Pv~SGG~~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~  425 (468)
T PRK04208        355 IFFDQDWGSIKPVFPVASGGIHPGHMPALLDIFGDDVVLQFGGGTHGHPDGTAAGATANRVALEACVEARN  425 (468)
T ss_pred             ccccccccCCCCceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHHHhcCc
Confidence                     1234667766433  232222 356554443333332  2       567777888777643

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.12  E-value=1.3  Score=34.98  Aligned_cols=131  Identities=13%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.++.+.+.+++||+++-+-.+.    ++++.+.++|+|++.+..+...     ++.+.++++... ..++.+++--.  
T Consensus        62 ~~~~~i~~~v~iPi~~~~~i~~~----~~v~~~~~~Gad~v~l~~~~~~-----~~~~~~~~~~~~-~~g~~~~v~v~--  129 (217)
T cd00331          62 EDLRAVREAVSLPVLRKDFIIDP----YQIYEARAAGADAVLLIVAALD-----DEQLKELYELAR-ELGMEVLVEVH--  129 (217)
T ss_pred             HHHHHHHHhcCCCEEECCeecCH----HHHHHHHHcCCCEEEEeeccCC-----HHHHHHHHHHHH-HcCCeEEEEEC--
Confidence            34455555448999976432222    3788899999999999877532     445555554442 24555433211  


Q ss_pred             CcccccCHHHHHHHHcC-CCEEEEee------C-CHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecc
Q psy9711          94 VTNIDISVDTLVKLAHH-ENIRGVKD------T-DNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINAL  161 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~-p~i~giK~------s-d~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~  161 (198)
                            +.+.+.+..+. ..++|+=.      . +...+.++.+ ..+.+..++  .|-.  +.+...+..|++|++.|.
T Consensus       130 ------~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~-~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs  202 (217)
T cd00331         130 ------DEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAP-LIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE  202 (217)
T ss_pred             ------CHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence                  45556666654 45665542      1 5555666553 322333444  3332  356677889999999887


Q ss_pred             cc
Q psy9711         162 SA  163 (198)
Q Consensus       162 ~n  163 (198)
                      +-
T Consensus       203 ai  204 (217)
T cd00331         203 SL  204 (217)
T ss_pred             HH
Confidence            63

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=95.08  E-value=1.2  Score=39.04  Aligned_cols=169  Identities=14%  Similarity=0.084  Sum_probs=97.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     +.. ..+.+++. +++.+++++.+++.|+.++|+.+-.+ ..+     ..+..+
T Consensus       185 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~-G~~-----~l~~l~  257 (412)
T TIGR03326       185 SQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITAP-VREMERRAELVADLGGQYVMVDVVVC-GWS-----ALQYIR  257 (412)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEEEeecc-chH-----HHHHHH
Confidence            345667889988777777665     333 45677764 89999999999999999999975443 222     234444


Q ss_pred             HHHccCCCCEEEEeCCCCcc-------cccCHHHHHH---HH--c---CCCEEEEeeC-CH---HHHHHHHhhc---CCC
Q psy9711          77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLVK---LA--H---HENIRGVKDT-DN---IKLANMANQT---KDL  134 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~---L~--~---~p~i~giK~s-d~---~~~~~~~~~~---~~~  134 (198)
                      +-+...++||..|-.  .+|       ..++..++.+   |+  +   .|++-+=|.. +.   .++.+..++.   ..+
T Consensus       258 ~~~~~~~l~ih~Hra--~~ga~~~~~~~Gis~~vl~kl~RLaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~  335 (412)
T TIGR03326       258 ELTEDLGLAIHAHRA--MHAAFTRNPKHGISMFALAKLYRLIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQKWHHIKP  335 (412)
T ss_pred             HhhccCCeEEEEcCC--cccccccCCCCcCcHHHHHHHHHHcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhCcccCCCC
Confidence            444455777776533  221       1344555554   44  2   2555243555 33   3343333221   134


Q ss_pred             CeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711         135 NFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK  180 (198)
Q Consensus       135 ~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd  180 (198)
                      -|.+.+|.-+  .+...+ ..|-|-.+...+.++  |       +.+++-|+++.+|.
T Consensus       336 ~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~  393 (412)
T TIGR03326       336 VFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAIDAIIEGI  393 (412)
T ss_pred             ceEecCCCCChhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHHHHHHHHcCC
Confidence            5777776443  233332 356554444433342  2       57788888888874

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>PRK08185 hypothetical protein; Provisional

Probab=94.98  E-value=0.54  Score=39.03  Aligned_cols=99  Identities=8%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEEE--e-CCCC--c----HHH----HHHHHHHHH-hcCCCEEEE-----cCCCC
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTIIA--G-TYCE--S----TRA----TIDLTQKAA-KAGANAALI-----LCPYY   61 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~--g-v~~~--~----~~~----~i~~a~~a~-~~Gad~v~~-----~~P~y   61 (198)
                      ...|+.+|..++.+.+++.+   +++|=+  | ++..  .    ..+    ..+.++... +.|+|.+.+     ...|-
T Consensus        99 ~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~  178 (283)
T PRK08185         99 GSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP  178 (283)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC
Confidence            35689999999999999887   555522  2 2211  0    011    234444444 459999988     44433


Q ss_pred             c--CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          62 F--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        62 ~--~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      .  +|..+    ++..++|.+.+++|++++     .|..++.+.+++..+..
T Consensus       179 ~~~kp~L~----~e~l~~I~~~~~iPLVlH-----Ggsg~~~e~~~~ai~~G  221 (283)
T PRK08185        179 KDKKPELQ----MDLLKEINERVDIPLVLH-----GGSANPDAEIAESVQLG  221 (283)
T ss_pred             CCCCCCcC----HHHHHHHHHhhCCCEEEE-----CCCCCCHHHHHHHHHCC
Confidence            3  34422    678888888889999985     45668899998887654

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=94.97  E-value=0.72  Score=40.01  Aligned_cols=88  Identities=20%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEE--cCCCCcC---C----CCCHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALI--LCPYYFQ---K----KMTEDLIYEHFI   76 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~---~----~~~~~~i~~y~~   76 (198)
                      ..++..+.++.+.+.. .+|||+.+.. .+.++-.+.++..++.|+|++-+  ..|....   .    ..+++.+.+..+
T Consensus        96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~  175 (385)
T PLN02495         96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG  175 (385)
T ss_pred             CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence            4666676666665555 7899999944 78999999999999999999986  3555421   0    123566666667


Q ss_pred             HHHccCCCCEEEEeCCCCc
Q psy9711          77 SVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~t   95 (198)
                      .+-+.+++||++==.|..+
T Consensus       176 ~Vk~~~~iPv~vKLsPn~t  194 (385)
T PLN02495        176 WINAKATVPVWAKMTPNIT  194 (385)
T ss_pred             HHHHhhcCceEEEeCCChh
Confidence            7777778999997777543

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=94.87  E-value=0.6  Score=39.94  Aligned_cols=141  Identities=15%  Similarity=0.224  Sum_probs=91.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .+|.+|+.+.++.+....         +..|-+.++.  .++..++++...++|+|.+++-...-.     .+.+.+..+
T Consensus        69 ~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~--~~~~~er~~~L~~agvD~ivID~a~g~-----s~~~~~~ik  141 (352)
T PF00478_consen   69 NMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGT--RDDDFERAEALVEAGVDVIVIDSAHGH-----SEHVIDMIK  141 (352)
T ss_dssp             SSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEES--STCHHHHHHHHHHTT-SEEEEE-SSTT-----SHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhccccccccccccccceEEEEecC--CHHHHHHHHHHHHcCCCEEEccccCcc-----HHHHHHHHH
Confidence            578899999998887531         4444444443  446788888899999999998766532     566667777


Q ss_pred             HHHccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-C-----H---------HHHHHHHh---hcCCCCeE
Q psy9711          77 SVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-D-----N---------IKLANMAN---QTKDLNFS  137 (198)
Q Consensus        77 ~i~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d-----~---------~~~~~~~~---~~~~~~~~  137 (198)
                      .|-+..+ +||+.=|       -.+.+....|.+.. +-++|.. .     .         +++..+..   ....-+..
T Consensus       142 ~ik~~~~~~~viaGN-------V~T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~  213 (352)
T PF00478_consen  142 KIKKKFPDVPVIAGN-------VVTYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVP  213 (352)
T ss_dssp             HHHHHSTTSEEEEEE-------E-SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHhCCCceEEecc-------cCCHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCc
Confidence            8877775 8888744       57889999998754 8888887 1     1         23332221   11122455


Q ss_pred             EEe-c---ChhhHHHHhhcCCCeEEecc
Q psy9711         138 VFA-G---SAGYLLSGLLVGCAGGINAL  161 (198)
Q Consensus       138 v~~-G---~d~~~~~~l~~G~~G~is~~  161 (198)
                      |.. |   ....+.-++.+|++.++.|.
T Consensus       214 iIADGGi~~sGDi~KAla~GAd~VMlG~  241 (352)
T PF00478_consen  214 IIADGGIRTSGDIVKALAAGADAVMLGS  241 (352)
T ss_dssp             EEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred             eeecCCcCcccceeeeeeecccceeech
Confidence            553 3   23467889999999998774

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK15063 isocitrate lyase; Provisional

Probab=94.84  E-value=0.31  Score=42.54  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHhc---CCe--EEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711           7 STEEEKLKIISTLRQET---KKT--IIAGTYC-------------------------------ESTRATIDLTQKAAKAG   50 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~p--vi~gv~~-------------------------------~~~~~~i~~a~~a~~~G   50 (198)
                      .+.+|..+=+++++.+.   ++|  |++=+-+                               ..++++|++++.+.+ |
T Consensus       199 vp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-G  277 (428)
T PRK15063        199 VPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-Y  277 (428)
T ss_pred             ecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-C
Confidence            56777777777777664   444  4444433                               358999999999999 9


Q ss_pred             CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHHHHHH
Q psy9711          51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTLVKLA  108 (198)
Q Consensus        51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l~~L~  108 (198)
                      ||.+.+-...   ++  .+++.++-+.|-...+.-++.||. |..+ ...++.+++++..
T Consensus       278 AD~iw~Et~~---~d--~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~  332 (428)
T PRK15063        278 ADLIWCETST---PD--LEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQ  332 (428)
T ss_pred             CCEEEeCCCC---CC--HHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHH
Confidence            9999886422   44  777777766664332333899984 5432 2348888855443

>PRK04302 triosephosphate isomerase; Provisional

Probab=94.78  E-value=1.6  Score=34.64  Aligned_cols=138  Identities=14%  Similarity=0.006  Sum_probs=77.2

Q ss_pred             CCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711          24 KKTIIAGTYCE-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID   98 (198)
Q Consensus        24 ~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~   98 (198)
                      .+|++++-...     .|.+  ..++.++++|+|++++...--. ..  .+++.++++... ..++..+ +..|.     
T Consensus        56 ~i~v~aq~~~~~~~G~~tg~--~~~~~l~~~G~~~vii~~ser~-~~--~~e~~~~v~~a~-~~Gl~~I-~~v~~-----  123 (223)
T PRK04302         56 DIPVYAQHVDPVEPGSHTGH--ILPEAVKDAGAVGTLINHSERR-LT--LADIEAVVERAK-KLGLESV-VCVNN-----  123 (223)
T ss_pred             CCeEEeccCCCCCCCCchhh--hHHHHHHHcCCCEEEEeccccc-cC--HHHHHHHHHHHH-HCCCeEE-EEcCC-----
Confidence            56776653222     2333  3377778899999988753211 22  556666666554 4687666 34432     


Q ss_pred             cCHHHHHHHHcC-CCEEEE---------ee-C--CHHHHH---HHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEE
Q psy9711          99 ISVDTLVKLAHH-ENIRGV---------KD-T--DNIKLA---NMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGI  158 (198)
Q Consensus        99 l~~~~l~~L~~~-p~i~gi---------K~-s--d~~~~~---~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~i  158 (198)
                        .+.+.++.+. +.++++         +. +  ++..+.   +.+++ ..++..++.|..    +.....+..|+||++
T Consensus       124 --~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~-~~~~~pvi~GggI~~~e~~~~~~~~gadGvl  200 (223)
T PRK04302        124 --PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKK-VNPDVKVLCGAGISTGEDVKAALELGADGVL  200 (223)
T ss_pred             --HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHcCCCCEEE
Confidence              4566666654 556663         12 1  233333   33422 234566665543    234455679999999


Q ss_pred             ecccccchHHHHHHHHHH
Q psy9711         159 NALSAVLGGPICELYDLA  176 (198)
Q Consensus       159 s~~~n~~P~~~~~l~~~~  176 (198)
                      .|.+.+-++-+.++.+.+
T Consensus       201 VGsa~l~~~~~~~~~~~~  218 (223)
T PRK04302        201 LASGVVKAKDPEAALRDL  218 (223)
T ss_pred             EehHHhCCcCHHHHHHHH
Confidence            998876554454554433

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=94.77  E-value=0.35  Score=39.52  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=60.0

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCccccc
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI   99 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l   99 (198)
                      ++.++-+..      .++.++++|+|++++....    +..|+   .|-+++..|.+.|++.++.|+++=|.|. .++.-
T Consensus        15 ~~~~ayD~~------sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f-g~y~~   87 (254)
T cd06557          15 VMLTAYDYP------TAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF-GSYQT   87 (254)
T ss_pred             EEEeCCCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC-CcccC
Confidence            455666532      3566778899999865331    11222   3699999999999999999988889884 34444


Q ss_pred             CHHHH----HHHHcCCCEEEEeeC
Q psy9711         100 SVDTL----VKLAHHENIRGVKDT  119 (198)
Q Consensus       100 ~~~~l----~~L~~~p~i~giK~s  119 (198)
                      +++..    .++.+--.+.|+|.+
T Consensus        88 ~~~~av~~a~r~~~~aGa~aVkiE  111 (254)
T cd06557          88 SPEQALRNAARLMKEAGADAVKLE  111 (254)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEEEc
Confidence            45543    445455789999999

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.77  E-value=1.5  Score=34.14  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      |+...=.+.++...+.. +..+++++--.+...  ..++.+.++|||.+.+.  +...+. +..++.++    +++.+++
T Consensus        34 l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~vh--~~~~~~-~~~~~i~~----~~~~g~~  104 (206)
T TIGR03128        34 LIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--YEAEQAFAAGADIVTVL--GVADDA-TIKGAVKA----AKKHGKE  104 (206)
T ss_pred             HHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--HHHHHHHHcCCCEEEEe--ccCCHH-HHHHHHHH----HHHcCCE
Confidence            33344456777777765 667777752222221  25778889999988854  221110 12344443    4556899


Q ss_pred             EEEE-eCCCCcccccCHHHHHHHHc-CCCEEEEee-----C----CHHHHHHHHhhcCCCCeEEEecCh-hhHHHHhhcC
Q psy9711          86 VIIY-NNTFVTNIDISVDTLVKLAH-HENIRGVKD-----T----DNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVG  153 (198)
Q Consensus        86 i~lY-n~P~~tg~~l~~~~l~~L~~-~p~i~giK~-----s----d~~~~~~~~~~~~~~~~~v~~G~d-~~~~~~l~~G  153 (198)
                      +++- ..|. +    +.+.+.+..+ ...++++--     +    .+.++.++.+......+.+-.|-. +.....+..|
T Consensus       105 ~~~~~~~~~-t----~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G  179 (206)
T TIGR03128       105 VQVDLINVK-D----KVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLG  179 (206)
T ss_pred             EEEEecCCC-C----hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC
Confidence            9874 2342 1    3455555555 355665421     1    233445544222223444445554 3566778899


Q ss_pred             CCeEEeccc
Q psy9711         154 CAGGINALS  162 (198)
Q Consensus       154 ~~G~is~~~  162 (198)
                      +++++.|.+
T Consensus       180 a~~v~vGsa  188 (206)
T TIGR03128       180 PDIVIVGGA  188 (206)
T ss_pred             CCEEEEeeh
Confidence            999998865

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.76  E-value=1.2  Score=36.55  Aligned_cols=62  Identities=19%  Similarity=0.254  Sum_probs=47.6

Q ss_pred             CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ++|||+-+-..|.        .+..++++.+++.||+++.+. -|.|+..+      .++.+.+.+.+++||+..|+
T Consensus        49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~------~~~l~~v~~~v~iPvl~kdf  119 (260)
T PRK00278         49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS------LEYLRAARAAVSLPVLRKDF  119 (260)
T ss_pred             CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC------HHHHHHHHHhcCCCEEeeee
Confidence            6899998743332        356899999999999999886 46677654      46777788888999998663

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=94.73  E-value=0.78  Score=38.86  Aligned_cols=97  Identities=9%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CHHHHHHHHH----HHHHhc--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC---CCCHHHH
Q psy9711           8 TEEEKLKIIS----TLRQET--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQK---KMTEDLI   71 (198)
Q Consensus         8 t~~Er~~l~~----~~~~~~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~---~~~~~~i   71 (198)
                      |.+.|.+++.    .+.+.+  +.||.+=++       +.+.+++++.++..++.|+|.+-+....+...   .......
T Consensus       199 sl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~  278 (336)
T cd02932         199 SLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQ  278 (336)
T ss_pred             CHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCcccc
Confidence            4455555444    444444  566765333       34689999999999999999998764332211   0012223


Q ss_pred             HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      .++.+.|.+.+++||+.      .|.-.+++...++.+.
T Consensus       279 ~~~~~~ir~~~~iPVi~------~G~i~t~~~a~~~l~~  311 (336)
T cd02932         279 VPFAERIRQEAGIPVIA------VGLITDPEQAEAILES  311 (336)
T ss_pred             HHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHHHc
Confidence            56778888888999986      4555688888888753

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=94.61  E-value=0.57  Score=38.94  Aligned_cols=80  Identities=9%  Similarity=-0.039  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH   74 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y   74 (198)
                      .|.+|-.+.++.+++.+   +..|.+.+         +..+.+..++.++.+.++|+|.+.+.-.. ...+  |.++.+.
T Consensus       113 ~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~-G~~~--P~~v~~l  189 (287)
T PRK05692        113 CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTI-GVGT--PGQVRAV  189 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecccc-CccC--HHHHHHH
Confidence            45556555555555555   44443221         12356677777777777777766554333 2223  7777777


Q ss_pred             HHHHHccCC-CCEEEE
Q psy9711          75 FISVADNSP-IPVIIY   89 (198)
Q Consensus        75 ~~~i~~~~~-~pi~lY   89 (198)
                      ++.+.+..+ +|+-+|
T Consensus       190 v~~l~~~~~~~~i~~H  205 (287)
T PRK05692        190 LEAVLAEFPAERLAGH  205 (287)
T ss_pred             HHHHHHhCCCCeEEEE
Confidence            777777664 666543

>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria

Probab=94.60  E-value=0.66  Score=40.68  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     +..+ .+.+++ ++++.+++++.++++|++++|+.+-.+. .+        -.+
T Consensus       201 ~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~~G-~~--------al~  270 (424)
T cd08208         201 DVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHDVAVRNGANALLINAMPVG-LS--------AVR  270 (424)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeeccc-HH--------HHH
Confidence            345566789988776666665     3444 458887 6999999999999999999999754432 22        245


Q ss_pred             HHHccCCCCEEEEeCCCC-----cccccCHHHHHHHHcC--------CCEEEEeeC-CHHHHHHH---HhhcC---CCCe
Q psy9711          77 SVADNSPIPVIIYNNTFV-----TNIDISVDTLVKLAHH--------ENIRGVKDT-DNIKLANM---ANQTK---DLNF  136 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~-----tg~~l~~~~l~~L~~~--------p~i~giK~s-d~~~~~~~---~~~~~---~~~~  136 (198)
                      .+++.+++||..+-.-..     ...-++.-++.+|.++        |+.-| |.. ......+.   .++..   .+-|
T Consensus       271 ~L~~~~~l~ihaHra~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~k~~~  349 (424)
T cd08208         271 MLRKHAQVPLIAHFPFIASFSRLEKYGIHSRVMTKLQRLAGLDVVIMPGFGP-RMMTPEEEVLECVIACLEPMGPIKPCL  349 (424)
T ss_pred             HHHhcCCCeEEeccCccccccCCCCCCCcHHHHHHHHHHcCCCeeeccCCCC-CccchHHHHHHHHHHHhCcccCCCCce
Confidence            555556788775542110     1123555556655532        23322 444 32333222   21111   2347


Q ss_pred             EEEecChh--hHHHHh-hcC-CCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711         137 SVFAGSAG--YLLSGL-LVG-CAGGINALSAVL--G-------GPICELYDLAKAGK  180 (198)
Q Consensus       137 ~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~--P-------~~~~~l~~~~~~gd  180 (198)
                      .|.+|.-+  .+...+ ..| .|-++...+.++  |       ..+++-|+++.+|.
T Consensus       350 Pv~SGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHP~G~aaGa~A~RqA~ea~~~G~  406 (424)
T cd08208         350 PVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIEAGI  406 (424)
T ss_pred             EecccCCCHhHHHHHHHHhCCCCEEEecCccccCCCCChHHHHHHHHHHHHHHHcCC
Confidence            77776532  233333 467 365544444442  2       57778888888884

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=94.55  E-value=0.49  Score=39.99  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=58.7

Q ss_pred             HHHHHHhcCCCEEEEcCCC------Cc-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH----HHHHcC
Q psy9711          42 LTQKAAKAGANAALILCPY------YF-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL----VKLAHH  110 (198)
Q Consensus        42 ~a~~a~~~Gad~v~~~~P~------y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~  110 (198)
                      .++.+.++|+|.+++....      |- ....|-++++.|.+.|++.++.|+++=|.|.. .+..+++..    .+|.+-
T Consensus        47 sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg-SY~~s~e~av~nA~rl~~e  125 (332)
T PLN02424         47 SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG-SYESSTDQAVESAVRMLKE  125 (332)
T ss_pred             HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence            4677788999999987643      11 11246899999999999999999999999963 255677664    455444


Q ss_pred             CCEEEEeeC
Q psy9711         111 ENIRGVKDT  119 (198)
Q Consensus       111 p~i~giK~s  119 (198)
                      -...|||.+
T Consensus       126 aGa~aVKlE  134 (332)
T PLN02424        126 GGMDAVKLE  134 (332)
T ss_pred             hCCcEEEEC
Confidence            689999999

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=94.55  E-value=0.18  Score=41.36  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCC------------------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYC------------------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~------------------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |..+.++.+++. ++||+.|+|=                  ...+++++.++..+++||+++++-.+    +   .    
T Consensus       118 ~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~---~----  185 (264)
T PRK00311        118 EVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV----P---A----  185 (264)
T ss_pred             HHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H----
Confidence            555667766655 9999755432                  12458899999999999999998644    2   2    


Q ss_pred             HHHHHHHccCCCCEEEE-eCCCCcccccCHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIY-NNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lY-n~P~~tg~~l~~~~l~~L  107 (198)
                      +-.+.|.+++++|+|=- --|...|..+=...+.-+
T Consensus       186 ~~~~~i~~~l~iP~igiGaG~~~dgqvlv~~D~lG~  221 (264)
T PRK00311        186 ELAKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGL  221 (264)
T ss_pred             HHHHHHHHhCCCCEEEeccCCCCCceeeeHHhhcCC
Confidence            24567888889999843 335555665554444444

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=94.55  E-value=1.3  Score=35.80  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=53.1

Q ss_pred             HHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH----HHHHHcC
Q psy9711          42 LTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT----LVKLAHH  110 (198)
Q Consensus        42 ~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~----l~~L~~~  110 (198)
                      .|+.++++|+|++.+..-.    +..|+   .+-+++..+.+.|++.++.+-++=|.|..+|.  +++.    ..++.+ 
T Consensus        24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~--~~~~~~~~~~~l~~-  100 (240)
T cd06556          24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYG--APTAAFELAKTFMR-  100 (240)
T ss_pred             HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCc--CHHHHHHHHHHHHH-
Confidence            3566777899999998532    11121   46899999999999999854455588866554  4333    445555 


Q ss_pred             CCEEEEeeCC
Q psy9711         111 ENIRGVKDTD  120 (198)
Q Consensus       111 p~i~giK~sd  120 (198)
                      -.+.|||.+|
T Consensus       101 aGa~gv~iED  110 (240)
T cd06556         101 AGAAGVKIEG  110 (240)
T ss_pred             cCCcEEEEcC
Confidence            6899999993

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.49  E-value=1.9  Score=37.18  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC----CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCccccc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC----PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI   99 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~----P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l   99 (198)
                      .++|.+.+   +..+..++++.+.++|+|.+.+..    ..|.....+.+.+.+.    .+..++||+.       |.-.
T Consensus       131 ~V~v~vr~---~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~----ik~~~ipVIa-------G~V~  196 (368)
T PRK08649        131 GVIVAVSL---SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEF----IYELDVPVIV-------GGCV  196 (368)
T ss_pred             eEEEEEec---CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHH----HHHCCCCEEE-------eCCC
Confidence            45555555   345678999999999999999953    2232211024444444    3445899876       3346


Q ss_pred             CHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHHhh----------cCCCCeEEEe-c---ChhhHHHHh
Q psy9711         100 SVDTLVKLAHHENIRGVKDT---------------DNIKLANMANQ----------TKDLNFSVFA-G---SAGYLLSGL  150 (198)
Q Consensus       100 ~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~~~----------~~~~~~~v~~-G---~d~~~~~~l  150 (198)
                      +++...++.+ -.+.+||..               ...++..+...          ..+.++.|+. |   ....+..++
T Consensus       197 t~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl  275 (368)
T PRK08649        197 TYTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI  275 (368)
T ss_pred             CHHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH
Confidence            7777777775 344444444               12333222210          0112355553 2   224578889


Q ss_pred             hcCCCeEEecccccc
Q psy9711         151 LVGCAGGINALSAVL  165 (198)
Q Consensus       151 ~~G~~G~is~~~n~~  165 (198)
                      .+|+++++.|..-..
T Consensus       276 alGAd~Vm~Gs~fa~  290 (368)
T PRK08649        276 ACGADAVMLGSPLAR  290 (368)
T ss_pred             HcCCCeecccchhcc
Confidence            999999998876443

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=94.48  E-value=0.8  Score=37.29  Aligned_cols=85  Identities=12%  Similarity=-0.050  Sum_probs=47.5

Q ss_pred             HHHHHHhc--CCeEEEeCCCC--------c----HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711          16 ISTLRQET--KKTIIAGTYCE--------S----TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        16 ~~~~~~~~--~~pvi~gv~~~--------~----~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      ++.+.+..  .+.+...++..        +    .+...+.++.|++.|.. +.+.+|...+.+  ++.+.+..+.+.+.
T Consensus        75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~--~~~~~~~~~~~~~~  151 (259)
T cd07939          75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDASRAD--PDFLIEFAEVAQEA  151 (259)
T ss_pred             HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCCCCC--HHHHHHHHHHHHHC
Confidence            34455544  56666666543        2    34445667777788863 556666666554  77777777777653


Q ss_pred             CCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          82 SPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                       +...  ...+...|. +.|+.+.++
T Consensus       152 -G~~~--i~l~DT~G~-~~P~~v~~l  173 (259)
T cd07939         152 -GADR--LRFADTVGI-LDPFTTYEL  173 (259)
T ss_pred             -CCCE--EEeCCCCCC-CCHHHHHHH
Confidence             3222  233444554 444444444

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.48  E-value=0.34  Score=40.36  Aligned_cols=57  Identities=16%  Similarity=0.115  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF   62 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~   62 (198)
                      ..-.++.-.++++.+.+..++||++=++. +..+..+.++.++++|+|++.+..-.+.
T Consensus       149 l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~  205 (299)
T cd02940         149 VGQDPELVEEICRWVREAVKIPVIAKLTP-NITDIREIARAAKEGGADGVSAINTVNS  205 (299)
T ss_pred             hccCHHHHHHHHHHHHHhcCCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence            33456677778888877668999998875 5568899999999999999998876544

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=94.41  E-value=0.76  Score=37.44  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCC--cccccCHHHHHHH---H-c
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFV--TNIDISVDTLVKL---A-H  109 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~--tg~~l~~~~l~~L---~-~  109 (198)
                      -+..++.+.+.|++++.+....-. .+  +.+.++..++|.+.   .++|+++--.+..  .+. ++.+.+.++   + +
T Consensus        92 ~~~~v~~al~~Ga~~v~~~~~~g~-~~--~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~-~~~~~~~~~~~~a~~  167 (258)
T TIGR01949        92 IVTTVEDAIRMGADAVSIHVNVGS-DT--EWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD-RDPELVAHAARLGAE  167 (258)
T ss_pred             eeeeHHHHHHCCCCEEEEEEecCC-ch--HHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc-ccHHHHHHHHHHHHH
Confidence            456688999999999999865322 22  45555666666654   5799988322210  122 455666553   3 2


Q ss_pred             C-CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh--h------hHHHHhhcCCCeEEecc
Q psy9711         110 H-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--G------YLLSGLLVGCAGGINAL  161 (198)
Q Consensus       110 ~-p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d--~------~~~~~l~~G~~G~is~~  161 (198)
                      . ..++++... +...+.++.+ ..+-++....|..  +      ++...+..|++|+..+.
T Consensus       168 ~GADyikt~~~~~~~~l~~~~~-~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~  228 (258)
T TIGR01949       168 LGADIVKTPYTGDIDSFRDVVK-GCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGR  228 (258)
T ss_pred             HCCCEEeccCCCCHHHHHHHHH-hCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhh
Confidence            2 345555444 7788877763 3334454444543  1      34455689999776554

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=94.37  E-value=0.24  Score=40.64  Aligned_cols=65  Identities=12%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             HHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          14 KIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +.++.+++.+++||++  |+...+.++++++++.+.++||+++.+..-.|..++  +.+..+-++.+..
T Consensus       186 ~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~--p~~~~~~l~~~v~  252 (267)
T PRK07226        186 ESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED--PEAITRAISAVVH  252 (267)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC--HHHHHHHHHHHHh
Confidence            4555555544777755  455447899999999999999999999998888776  8888887777664

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=94.36  E-value=1.2  Score=38.00  Aligned_cols=97  Identities=4%  Similarity=0.024  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHHhc----CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC-HHH-HHHH
Q psy9711           8 TEEEKLKIISTLRQET----KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMT-EDL-IYEH   74 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~----~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~-~~~-i~~y   74 (198)
                      |.+-|.+++..++++.    +.||.+-++       +.+.+++++.++..++.|+|.+-+....+..+... ..+ ...+
T Consensus       187 slenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~  266 (337)
T PRK13523        187 SPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPF  266 (337)
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHH
Confidence            4677777776666665    456666444       34789999999999999999999987654322100 111 2234


Q ss_pred             HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      -+.|-+.+++||+.      .|.--+++...++.+-
T Consensus       267 ~~~ik~~~~ipVi~------~G~i~~~~~a~~~l~~  296 (337)
T PRK13523        267 AEHIREHANIATGA------VGLITSGAQAEEILQN  296 (337)
T ss_pred             HHHHHhhcCCcEEE------eCCCCCHHHHHHHHHc
Confidence            45566667888876      3445578888887753

>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I

Probab=94.33  E-value=0.75  Score=40.66  Aligned_cols=168  Identities=7%  Similarity=-0.014  Sum_probs=95.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     +..+ .+.+++.++++.+++++.+++.|+.++|+.  +....+     ..+..+
T Consensus       186 ~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~--~~~G~~-----~l~~l~  258 (450)
T cd08212         186 SQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHD--LLTGFT-----AIQSLA  258 (450)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeee--cccccc-----hHHHHH
Confidence            344566788988777777666     3334 457887789999999999999999999997  222332     134444


Q ss_pred             HHHccCCCCEEEEeCCCC--c---ccccCHHHHH---HHH--c---CCCEEEEeeC-CHHH---HHHHHhhc--------
Q psy9711          77 SVADNSPIPVIIYNNTFV--T---NIDISVDTLV---KLA--H---HENIRGVKDT-DNIK---LANMANQT--------  131 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~--t---g~~l~~~~l~---~L~--~---~p~i~giK~s-d~~~---~~~~~~~~--------  131 (198)
                      +.++..++||..+-.-..  +   ..-++.-++.   ||+  +   .|++ +=|.. +...   +.+.++..        
T Consensus       259 ~~a~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~kl~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~~~~~~~~~d~~~  337 (450)
T cd08212         259 KWCRDNGMLLHLHRAGHATYDRQKNHGIHFRVLAKWLRLSGVDHIHAGTV-VGKLEGDPLVTLGFYDLLRDDYIEKDRSR  337 (450)
T ss_pred             HHhhhcCceEEeccccceecccCccCCcCHHHHHHHHHHcCCCccccCCC-cCCcCCCHHHHHHHHHHHhhhhccccccc
Confidence            444456888776643110  0   1134444554   554  3   2666 44665 4332   32222110        


Q ss_pred             ----------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHc
Q psy9711         132 ----------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKA  178 (198)
Q Consensus       132 ----------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~  178 (198)
                                ..+-|.+.+|.-.  .+...+ ..|-|-++...+.++  |       +.+++-|+++.+
T Consensus       338 ~~~~~q~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~  406 (450)
T cd08212         338 GIFFTQDWASLPGVMPVASGGIHVGQMHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRVALEAMVQ  406 (450)
T ss_pred             ccccccccccCCCceEecCCCCCHHHHHHHHHhcCCceEEecCcceecCCCChhHHHHHHHHHHHHHHH
Confidence                      1234777776432  233332 356554444444442  2       567777777777

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=94.19  E-value=0.49  Score=40.01  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc-CCeEEEe--CCCCcHH-HHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET-KKTIIAG--TYCESTR-ATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHF   75 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~g--v~~~~~~-~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~   75 (198)
                      +|.....+++--.++++.+++++ ++||-+=  +|....+ .+.+.++.+++.|++++.+-.-.-. ..+  ...-.++.
T Consensus       112 ~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~--~~ad~~~I  189 (323)
T COG0042         112 AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYL--GPADWDYI  189 (323)
T ss_pred             cchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCC--CccCHHHH
Confidence            46667778888899999999998 5998773  3443333 6889999999999999999864421 111  22345777


Q ss_pred             HHHHccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          76 ISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        76 ~~i~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      .++.+.++ +||+.      .|--.+++...+..+.-++-|+=..
T Consensus       190 ~~vk~~~~~ipvi~------NGdI~s~~~a~~~l~~tg~DgVMig  228 (323)
T COG0042         190 KELKEAVPSIPVIA------NGDIKSLEDAKEMLEYTGADGVMIG  228 (323)
T ss_pred             HHHHHhCCCCeEEe------CCCcCCHHHHHHHHHhhCCCEEEEc
Confidence            78888887 89886      4555689999988877666666555

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=94.18  E-value=1.2  Score=37.88  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEe--CCC-------------CcHHHHHHHHHHHHh--cCCCEEEEcCCCCcCC-----
Q psy9711          10 EEKLKIISTLRQET---KKTIIAG--TYC-------------ESTRATIDLTQKAAK--AGANAALILCPYYFQK-----   64 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~g--v~~-------------~~~~~~i~~a~~a~~--~Gad~v~~~~P~y~~~-----   64 (198)
                      +++.+.++.+.+++   ++|+++-  +..             ...+-.++.+|.+.+  +|+|-+=+-.|.-.+.     
T Consensus       139 ~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~  218 (340)
T PRK12858        139 DRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFD  218 (340)
T ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccc
Confidence            45666788888888   8998874  111             234566777888884  9999888877743211     


Q ss_pred             ----CCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          65 ----KMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        65 ----~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                          -.++++..++|+++.+++++|+++--
T Consensus       219 ~~~~~~~~~~~~~~f~~~~~a~~~P~vvls  248 (340)
T PRK12858        219 GFEEAYTQEEAFKLFREQSDATDLPFIFLS  248 (340)
T ss_pred             cccccccHHHHHHHHHHHHhhCCCCEEEEC
Confidence                01489999999999999999999944

>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III

Probab=94.17  E-value=0.63  Score=40.72  Aligned_cols=174  Identities=11%  Similarity=0.035  Sum_probs=97.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ......+||......+++.+     +.. -.+.+++.++++.+++++.++++|+.++|+.+-.+. .+     .....++
T Consensus       174 q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G-~~-----~l~~l~~  247 (414)
T cd08206         174 QPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTAG-WT-----AIQSARR  247 (414)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeeccc-HH-----HHHHHHH
Confidence            35567788888777666665     333 455788767999999999999999999999754432 22     1222222


Q ss_pred             HHccCCCCEEEEeCCCCcc-------cccCHHHHHH---HH--c---CCCEEEEeeC-CHH---HHHHHHhhc-------
Q psy9711          78 VADNSPIPVIIYNNTFVTN-------IDISVDTLVK---LA--H---HENIRGVKDT-DNI---KLANMANQT-------  131 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~---L~--~---~p~i~giK~s-d~~---~~~~~~~~~-------  131 (198)
                      -+...++||..+-.  .+|       ..++..++.+   |+  +   .|++. =|.. +..   ++.+.++..       
T Consensus       248 ~~~~~~l~ih~HrA--~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ih~~t~~-Gk~~~~~~~~~~~~~~l~~~~~~~~~~  324 (414)
T cd08206         248 WCPDNGLALHAHRA--GHAAFTRQKNHGISMRVLAKLARLIGVDHIHTGTVV-GKLEGDPSEVKGIADMLREDEVEGDLS  324 (414)
T ss_pred             hccccCeEEEEccc--cceecccCCCCcCcHHHHHHHHHHcCCCccccCCCc-cCCCCCHHHHHHHHHHhhcccccCCcc
Confidence            22234566665533  222       1345555554   44  2   36664 4555 433   333332111       


Q ss_pred             ----------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC-HHHHHH
Q psy9711         132 ----------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK-WEEAMK  186 (198)
Q Consensus       132 ----------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd-~~~A~~  186 (198)
                                ..+-|.|.+|.-.  .+...+ ..|-|-++...+.++         .+.+++-|+++.+|. .+++.+
T Consensus       325 ~~~~~q~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak  402 (414)
T cd08206         325 RIFFNQDWGGMKPVFPVASGGLHPGRMPALIEILGDDVILQFGGGTHGHPDGPAAGAKANRQALEAWVQGRILREYAK  402 (414)
T ss_pred             ccccccccccCCCcEEecCCccChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHHHhCCChHHHhh
Confidence                      1234677766433  232322 356554444444442         257788888888774 454444

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=94.16  E-value=0.24  Score=40.48  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEeCC------------------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711          10 EEKLKIISTLRQETKKTIIAGTY------------------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI   71 (198)
Q Consensus        10 ~Er~~l~~~~~~~~~~pvi~gv~------------------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i   71 (198)
                      +|..+.++.+++. ++||+.++|                  ....+++++.++.++++|||++.+-.+    +   .   
T Consensus       114 ~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----~---~---  182 (254)
T cd06557         114 AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV----P---A---  182 (254)
T ss_pred             HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H---
Confidence            3566667777655 888874332                  112578899999999999999998644    1   2   


Q ss_pred             HHHHHHHHccCCCCEEEE-eCCCCcccccCHHHHHHH
Q psy9711          72 YEHFISVADNSPIPVIIY-NNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lY-n~P~~tg~~l~~~~l~~L  107 (198)
                       +-.+.|++++++|+|=- --|...|..+=...+.-+
T Consensus       183 -~~~~~i~~~v~iP~igiGaG~~~dgqvlv~~D~lG~  218 (254)
T cd06557         183 -ELAKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGL  218 (254)
T ss_pred             -HHHHHHHHhCCCCEEEeccCCCCCceeehHHhhcCC
Confidence             34677888889999843 345545555544433333

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=94.06  E-value=1.5  Score=36.41  Aligned_cols=151  Identities=17%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             CCeEEEeCCCCc---HHHHHHHHHHHHhcCCCEEEE--cCCCCcC-CC-CCHHHHHH-HHHHHHccCCCCEEEEeCCCCc
Q psy9711          24 KKTIIAGTYCES---TRATIDLTQKAAKAGANAALI--LCPYYFQ-KK-MTEDLIYE-HFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        24 ~~pvi~gv~~~~---~~~~i~~a~~a~~~Gad~v~~--~~P~y~~-~~-~~~~~i~~-y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      .+||++++...+   .+|-++.++..+ .|+|++=+  ..|.... .+ ...+++.. ..+.+.+.+++|+++-=.|..+
T Consensus        96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~  174 (295)
T PF01180_consen   96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFT  174 (295)
T ss_dssp             CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSS
T ss_pred             ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCC
Confidence            589999999888   899999999888 88999866  3554321 10 11344444 3344445568999998777533


Q ss_pred             ccccCHHHHHHHHc--CCCEE-----EEee------------------C-C------HHHHHHHHhhcCCCCeEEEec--
Q psy9711          96 NIDISVDTLVKLAH--HENIR-----GVKD------------------T-D------NIKLANMANQTKDLNFSVFAG--  141 (198)
Q Consensus        96 g~~l~~~~l~~L~~--~p~i~-----giK~------------------s-d------~~~~~~~~~~~~~~~~~v~~G--  141 (198)
                      .... .+...++.+  ...|+     +-.+                  | .      +..+.++. +..++++.|...  
T Consensus       175 ~~~~-~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~-~~~~~~i~Iig~GG  252 (295)
T PF01180_consen  175 DIEP-FAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELR-KALGQDIPIIGVGG  252 (295)
T ss_dssp             CHHH-HHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHH-HHTTTSSEEEEESS
T ss_pred             chHH-HHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHH-hccccceEEEEeCC
Confidence            2111 233444432  22233     1111                  1 0      01122222 344557877643  


Q ss_pred             Ch--hhHHHHhhcCCCeEEeccccc--chHHHHHHHHHHH
Q psy9711         142 SA--GYLLSGLLVGCAGGINALSAV--LGGPICELYDLAK  177 (198)
Q Consensus       142 ~d--~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~~~  177 (198)
                      -.  ......+.+|++.+..+++.+  -|..+.+|.+.++
T Consensus       253 I~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~  292 (295)
T PF01180_consen  253 IHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELE  292 (295)
T ss_dssp             --SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHH
Confidence            22  246788999999998887754  3777777766543

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=94.06  E-value=0.32  Score=39.64  Aligned_cols=65  Identities=12%  Similarity=0.171  Sum_probs=49.2

Q ss_pred             HHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          14 KIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +.++.+++..++||++  |+...+.+++++.++.+.++|++++.+..-.|..++  +.+..+-++.+..
T Consensus       182 ~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d--p~~~~~~l~~~i~  248 (258)
T TIGR01949       182 DSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD--PVGITKAVCKIVH  248 (258)
T ss_pred             HHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC--HHHHHHHHHHHHh
Confidence            3455555544788866  455446899999999999999999999988887776  8877777776653

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=94.05  E-value=0.97  Score=37.44  Aligned_cols=79  Identities=10%  Similarity=-0.028  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCC------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYC------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      .|.+|-.+.++.+++.+   +..|.+++.+      .+.+..+++++.+.++|++.+.+.--. ...+  |.++.++++.
T Consensus       108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~~--P~~v~~l~~~  184 (280)
T cd07945         108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTL-GILS--PFETYTYISD  184 (280)
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCC-CCCC--HHHHHHHHHH
Confidence            45555555555555544   4445444432      245666666666666666655543322 2222  6666666666


Q ss_pred             HHccCC-CCEEE
Q psy9711          78 VADNSP-IPVII   88 (198)
Q Consensus        78 i~~~~~-~pi~l   88 (198)
                      +-+..+ +|+-+
T Consensus       185 l~~~~~~~~i~~  196 (280)
T cd07945         185 MVKRYPNLHFDF  196 (280)
T ss_pred             HHhhCCCCeEEE
Confidence            665543 55544

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=94.04  E-value=1.2  Score=36.49  Aligned_cols=81  Identities=9%  Similarity=0.002  Sum_probs=57.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|.+++   ...+.+...++++.+.++|++.+.+.-- ....+  |+++.++++.+-
T Consensus       104 ~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~--P~~v~~~~~~~~  180 (262)
T cd07948         104 GKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADT-VGIAT--PRQVYELVRTLR  180 (262)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCc-CCCCC--HHHHHHHHHHHH
Confidence            356667566555555555   56665553   3445788899999999999997766543 34444  999999999998


Q ss_pred             ccCCCCEEEE
Q psy9711          80 DNSPIPVIIY   89 (198)
Q Consensus        80 ~~~~~pi~lY   89 (198)
                      +..++|+-++
T Consensus       181 ~~~~~~i~~H  190 (262)
T cd07948         181 GVVSCDIEFH  190 (262)
T ss_pred             HhcCCeEEEE
Confidence            8888777554

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=94.02  E-value=0.19  Score=40.39  Aligned_cols=134  Identities=15%  Similarity=0.163  Sum_probs=79.6

Q ss_pred             CeEEEeC--CCCcHHHH-----HHHHHHHHhcCCCEEEEcCCCC-cCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711          25 KTIIAGT--YCESTRAT-----IDLTQKAAKAGANAALILCPYY-FQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF   93 (198)
Q Consensus        25 ~pvi~gv--~~~~~~~~-----i~~a~~a~~~Gad~v~~~~P~y-~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~   93 (198)
                      ++++++.  +...++.-     +..++.|.+.|||++-++.++- .... ..+...+-.+++.+.+   ++|+++--.| 
T Consensus        57 ~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-  134 (236)
T PF01791_consen   57 VGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILEPYL-  134 (236)
T ss_dssp             EEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEEECE-
T ss_pred             cceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEEEec-
Confidence            5677776  34455666     7899999999999999987762 2221 2666666666666655   7999987433 


Q ss_pred             Cccccc----CHHHHH---HHHcCCCEEEEeeC-C---------HHHHHHHHhhcCCC-C--eEEEecC------hh--h
Q psy9711          94 VTNIDI----SVDTLV---KLAHHENIRGVKDT-D---------NIKLANMANQTKDL-N--FSVFAGS------AG--Y  145 (198)
Q Consensus        94 ~tg~~l----~~~~l~---~L~~~p~i~giK~s-d---------~~~~~~~~~~~~~~-~--~~v~~G~------d~--~  145 (198)
                       ++..+    .++.+.   |++..-+.--+|-+ .         ...+.++......| +  +.+-.|.      +.  .
T Consensus       135 -~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~  213 (236)
T PF01791_consen  135 -RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLED  213 (236)
T ss_dssp             -CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHH
T ss_pred             -CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHH
Confidence             33332    344444   44433567778876 3         34445555322112 2  5555565      22  2


Q ss_pred             HHHHhhcCC--CeEEecc
Q psy9711         146 LLSGLLVGC--AGGINAL  161 (198)
Q Consensus       146 ~~~~l~~G~--~G~is~~  161 (198)
                      ....+.+|+  .|+.+|-
T Consensus       214 a~~~i~aGa~~~G~~~Gr  231 (236)
T PF01791_consen  214 ALEFIEAGADRIGTSSGR  231 (236)
T ss_dssp             HHHHHHTTHSEEEEEEHH
T ss_pred             HHHHHHcCChhHHHHHHH
Confidence            334458999  8888774

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=94.02  E-value=2.8  Score=34.11  Aligned_cols=95  Identities=11%  Similarity=0.142  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++..  ++++.+-. ++-+.+++++.++..++.|++.+  --|..      .+ -.+.++.+.+.+++||
T Consensus       113 ~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EeP~~------~~-d~~~~~~l~~~~~ipi  183 (265)
T cd03315         113 ARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYV--EQPLP------AD-DLEGRAALARATDTPI  183 (265)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEE--ECCCC------cc-cHHHHHHHHhhCCCCE
Confidence            34456677777665  56666654 33467788888888877766544  23321      11 1245666777777887


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ..=      ....++..+.++.+  ...++.+|-+
T Consensus       184 a~d------E~~~~~~~~~~~i~~~~~d~v~~k~~  212 (265)
T cd03315         184 MAD------ESAFTPHDAFRELALGAADAVNIKTA  212 (265)
T ss_pred             EEC------CCCCCHHHHHHHHHhCCCCEEEEecc
Confidence            762      22345666766653  4577777776

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors

Probab=94.01  E-value=3.3  Score=34.91  Aligned_cols=126  Identities=17%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH----HHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF----ISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~----~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      .++.++...++|+|++++.-|.....+  ++...+|.    ++|.+..     +.|+ +|..-   |.   ...+..+.+
T Consensus       179 ~~~~~~~~ieaGad~i~i~d~~~~~ls--p~~f~ef~~P~~k~i~~~i~~~~~~~~i-lh~cg---~~---~~~~~~~~~  249 (335)
T cd00717         179 TIEYLKAQIEAGAQAVQIFDSWAGALS--PEDFEEFVLPYLKRIIEEVKKRLPGVPV-ILFAK---GA---GGLLEDLAQ  249 (335)
T ss_pred             HHHHHHHHHHhCCCEEEEeCcccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEcC---CC---HHHHHHHHh
Confidence            356667667899999998877443333  77776554    6777765     2344 44321   22   256777887


Q ss_pred             CC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh--------h-h---HHHHhhcCC--CeEEecccccch-----HH
Q psy9711         110 HE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--------G-Y---LLSGLLVGC--AGGINALSAVLG-----GP  168 (198)
Q Consensus       110 ~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d--------~-~---~~~~l~~G~--~G~is~~~n~~P-----~~  168 (198)
                      .+ ++.++=.. |+....+.+    +++..+..+.+        + .   ....+..++  .|+|.+.++-+|     +-
T Consensus       250 ~~~~~~s~d~~~dl~e~k~~~----g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~tp~eN  325 (335)
T cd00717         250 LGADVVGLDWRVDLDEARKRL----GPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDTPPEN  325 (335)
T ss_pred             cCCCEEEeCCCCCHHHHHHHh----CCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCcCHHH
Confidence            64 66666555 777665544    23333333222        1 1   112233222  477877776443     56


Q ss_pred             HHHHHHHHH
Q psy9711         169 ICELYDLAK  177 (198)
Q Consensus       169 ~~~l~~~~~  177 (198)
                      +..+.++.+
T Consensus       326 i~a~v~a~~  334 (335)
T cd00717         326 VKALVEAVH  334 (335)
T ss_pred             HHHHHHHHh
Confidence            666666554

This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=93.99  E-value=2.7  Score=33.87  Aligned_cols=154  Identities=13%  Similarity=0.016  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCC--c-----C-CCCCHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYY--F-----Q-KKMTEDLIYEH   74 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y--~-----~-~~~~~~~i~~y   74 (198)
                      ++.|+-.+.++.-....  +.|+++.+++.+.++.++.++..++ ++|++=+-  .|.-  .     . .-.+++-+.+.
T Consensus        48 ~~~e~~~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~i  126 (231)
T TIGR00736        48 FNLEEFNSYIIEQIKKAESRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEF  126 (231)
T ss_pred             cCcccHHHHHHHHHHHHhhcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHH
Confidence            44334444444433333  7899999999999999999999877 79988875  3331  0     0 00248888888


Q ss_pred             HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------CHHHHHHHHhhcCCCCeEEE-ecCh-
Q psy9711          75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------DNIKLANMANQTKDLNFSVF-AGSA-  143 (198)
Q Consensus        75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------d~~~~~~~~~~~~~~~~~v~-~G~d-  143 (198)
                      .+.+. .+++||.+==-|..+.  .....+.+.++--++.++...         ++..+.++. +.. +++.|+ +|.= 
T Consensus       127 v~av~-~~~~PVsvKiR~~~~~--~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~-~~~-~~ipIIgNGgI~  201 (231)
T TIGR00736       127 LTKMK-ELNKPIFVKIRGNCIP--LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILS-EEF-NDKIIIGNNSID  201 (231)
T ss_pred             HHHHH-cCCCcEEEEeCCCCCc--chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHH-Hhc-CCCcEEEECCcC
Confidence            88888 4589998876654321  223234443322222222222         234444444 222 223333 3321 


Q ss_pred             --hhHHHHhhcCCCeEEecccccch
Q psy9711         144 --GYLLSGLLVGCAGGINALSAVLG  166 (198)
Q Consensus       144 --~~~~~~l~~G~~G~is~~~n~~P  166 (198)
                        +.....+..|++|++.+.+.+.+
T Consensus       202 s~eda~e~l~~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       202 DIESAKEMLKAGADFVSVARAILKG  226 (231)
T ss_pred             CHHHHHHHHHhCCCeEEEcHhhccC
Confidence              23456677899999988876654

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=93.98  E-value=0.59  Score=40.80  Aligned_cols=172  Identities=16%  Similarity=0.123  Sum_probs=97.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      +......+||.+....+++.+     +.. -.+.+++. +++.+++++.+++.|++++|+.+-.+. .+        -.+
T Consensus       184 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~G-~~--------~l~  253 (406)
T cd08207         184 NPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-IDEMRRNHDLVVEAGGTCVMVSLNSVG-LS--------GLA  253 (406)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHHHHHHhCCCeEEEeccccc-hH--------HHH
Confidence            445667889987766666665     333 45678775 999999999999999999999755432 22        144


Q ss_pred             HHHccCCCCEEEEeCCCC--c---ccccCHHHHH---HHH--c---CCCEEEEeeC--C--HHHHHHHHhhc----CCCC
Q psy9711          77 SVADNSPIPVIIYNNTFV--T---NIDISVDTLV---KLA--H---HENIRGVKDT--D--NIKLANMANQT----KDLN  135 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~--t---g~~l~~~~l~---~L~--~---~p~i~giK~s--d--~~~~~~~~~~~----~~~~  135 (198)
                      .+++..++||..+-.-..  +   ...++..++.   ||+  +   .|++ +=|..  +  ..++.+..++.    ..+-
T Consensus       254 ~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~~~~~~~-~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~  332 (406)
T cd08207         254 ALRRHSQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDHLHVNGL-ASKFWESDDSVIESARACLTPLGGPDDAA  332 (406)
T ss_pred             HHHhcCCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCccccCCC-cCCcCCCcHHHHHHHHHHhCchhccCCCe
Confidence            445556788875533110  0   1124444444   555  3   3666 44543  2  22322222221    2345


Q ss_pred             eEEEecChh--hHHHHh-hcCC-CeEEecccccc--h-------HHHHHHHHHHHcCCH-HHHH
Q psy9711         136 FSVFAGSAG--YLLSGL-LVGC-AGGINALSAVL--G-------GPICELYDLAKAGKW-EEAM  185 (198)
Q Consensus       136 ~~v~~G~d~--~~~~~l-~~G~-~G~is~~~n~~--P-------~~~~~l~~~~~~gd~-~~A~  185 (198)
                      |.+.+|.-.  .+...+ ..|- |=++...+.++  |       +.+++-|+++.+|.. +++.
T Consensus       333 ~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~rqA~ea~~~G~~l~e~A  396 (406)
T cd08207         333 MPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSLRQAWEAAVAGVPLEEYA  396 (406)
T ss_pred             eEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCCcHHHHH
Confidence            667766433  233332 4563 55544333332  2       577888888888853 4433

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III

Probab=93.85  E-value=0.95  Score=39.60  Aligned_cols=168  Identities=16%  Similarity=0.117  Sum_probs=96.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     + +--.+.+++. +++.+++++.++++|++++|+.+-.+ ..+     ..+..+
T Consensus       172 ~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~~a~e~G~~~~mv~~~~~-G~~-----~l~~l~  244 (412)
T cd08213         172 SQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VREMERRAELVADLGGKYVMIDVVVA-GWS-----ALQYLR  244 (412)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEeecccc-ChH-----HHHHHH
Confidence            345667889988777776665     3 3345678765 99999999999999999999864433 222     133333


Q ss_pred             HHHccCCCCEEEEeCCCCcc-------cccCHHHHHHH---H--c---CCCEEEEeeC-CH---HHHHHHHhhc------
Q psy9711          77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLVKL---A--H---HENIRGVKDT-DN---IKLANMANQT------  131 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L---~--~---~p~i~giK~s-d~---~~~~~~~~~~------  131 (198)
                      +-+...++||..+-.  .+|       .-++..++.+|   +  +   .|++ +=|.. +.   .++.+.++..      
T Consensus       245 ~~~~~~~l~ihaHra--~~ga~~r~~~~Gis~~~l~kl~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~l~~~~~~~~~  321 (412)
T cd08213         245 DLAEDYGLAIHAHRA--MHAAFTRNPRHGISMLVLAKLYRLIGVDQLHIGTA-VGKMEGDKEEVLRIADILREQKYKPDE  321 (412)
T ss_pred             HhccccCeEEEECCC--cceecccCCcCcCcHHHHHHHHHHcCCCccccCCc-cCCcCCCHHHHHHHHHHHHhccccccc
Confidence            333345677766532  221       13444555554   4  2   2666 44555 33   3343333211      


Q ss_pred             -----------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711         132 -----------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK  180 (198)
Q Consensus       132 -----------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd  180 (198)
                                 ..+-|.|.+|.-+  .+...+ ..|-|-++...+.++         .+.+++-|+++.+|.
T Consensus       322 ~~~~~~q~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~  393 (412)
T cd08213         322 EDFHLAQDWGGIKPVFPVASGGLHPGLVPDVIDILGKDIVIQVGGGVHGHPDGTRAGAKAVRQAIEAALEGI  393 (412)
T ss_pred             hhccccCccccCCCceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence                       1334777766443  232222 356554443333332         257788888888874

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=93.84  E-value=3.4  Score=35.40  Aligned_cols=188  Identities=13%  Similarity=0.101  Sum_probs=108.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEE-Ee--CCC------CcHHHH------------------HHHHHHHHhcCCCEE
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTII-AG--TYC------ESTRAT------------------IDLTQKAAKAGANAA   54 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi-~g--v~~------~~~~~~------------------i~~a~~a~~~Gad~v   54 (198)
                      .+...+|.+|+.++++...+. +++.| +|  ++.      ...++.                  .+-++.|.++|++.+
T Consensus        60 ~~g~~~s~e~Ki~ia~~L~~~-GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v  138 (347)
T PLN02746         60 NEKNIVPTSVKVELIQRLVSS-GLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEV  138 (347)
T ss_pred             CCCCCCCHHHHHHHHHHHHHc-CCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEE
Confidence            356789999999999998766 55543 22  110      011222                  333456778899988


Q ss_pred             EEcCCCC---cC--CCCCHHHHHHHHHHHHccC---CCCEEEEe-----CCCCcccccCHHHHHHHH----cC-CCEEEE
Q psy9711          55 LILCPYY---FQ--KKMTEDLIYEHFISVADNS---PIPVIIYN-----NTFVTNIDISVDTLVKLA----HH-ENIRGV  116 (198)
Q Consensus        55 ~~~~P~y---~~--~~~~~~~i~~y~~~i~~~~---~~pi~lYn-----~P~~tg~~l~~~~l~~L~----~~-p~i~gi  116 (198)
                      .+..|.-   .+  ...|.++..+-+.++.+..   ++.+..|-     .|..+  ..+++.+.+++    +. ...+.+
T Consensus       139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~l~~~~~~~~~~Gad~I~l  216 (347)
T PLN02746        139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSKVAYVAKELYDMGCYEISL  216 (347)
T ss_pred             EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHHHHHHHHHHHHcCCCEEEe
Confidence            8875552   21  2245888888777766644   57775333     44322  35677666655    33 478999


Q ss_pred             eeC----CHHHHHHHHhh---cCCC-CeEEEecChh------hHHHHhhcCCC---eEEec----------ccccchHHH
Q psy9711         117 KDT----DNIKLANMANQ---TKDL-NFSVFAGSAG------YLLSGLLVGCA---GGINA----------LSAVLGGPI  169 (198)
Q Consensus       117 K~s----d~~~~~~~~~~---~~~~-~~~v~~G~d~------~~~~~l~~G~~---G~is~----------~~n~~P~~~  169 (198)
                      +|+    ++.++.++++.   ..+. .+.+ -+.+.      ..+.++..|++   +.+.|          .+|..-|.+
T Consensus       217 ~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~-H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~l  295 (347)
T PLN02746        217 GDTIGVGTPGTVVPMLEAVMAVVPVDKLAV-HFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDV  295 (347)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHhCCCCeEEE-EECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHH
Confidence            999    77766655532   2222 3443 33332      34566788864   44443          445555666


Q ss_pred             HHHHHHH--HcC-CHHHHHHHHHHhhc
Q psy9711         170 CELYDLA--KAG-KWEEAMKLQHRLVK  193 (198)
Q Consensus       170 ~~l~~~~--~~g-d~~~A~~l~~~~~~  193 (198)
                      +.+.+..  ..| |+++..++.+.+..
T Consensus       296 v~~L~~~G~~tgiDl~~L~~~s~~v~~  322 (347)
T PLN02746        296 VYMLNGLGVSTNVDLGKLMAAGDFISK  322 (347)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            6666654  112 55666555555443

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=93.81  E-value=1.1  Score=38.64  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|.++.   +..+.+..++.++.+.++|++.+.+.--. ...  +|+++.+.++.+.
T Consensus       108 ~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~--~P~~v~~lv~~l~  184 (378)
T PRK11858        108 KKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-GIL--DPFTMYELVKELV  184 (378)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCC--CHHHHHHHHHHHH
Confidence            456677777666666666   66666553   44668999999999999999987776444 333  4999999999999


Q ss_pred             ccCCCCEEEE
Q psy9711          80 DNSPIPVIIY   89 (198)
Q Consensus        80 ~~~~~pi~lY   89 (198)
                      +..++|+-+|
T Consensus       185 ~~~~~~l~~H  194 (378)
T PRK11858        185 EAVDIPIEVH  194 (378)
T ss_pred             HhcCCeEEEE
Confidence            8888888776

>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=93.72  E-value=4.3  Score=35.32  Aligned_cols=165  Identities=18%  Similarity=0.136  Sum_probs=96.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     +.. -.+.+++ ++++.+++++.+++.|++++|+.+-.+ ..+        -++
T Consensus       165 ~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~-G~~--------~l~  234 (391)
T cd08209         165 DNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTG-PVFTLKEKARRLVEAGANALLFNVFAY-GLD--------VLE  234 (391)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEecccc-chH--------HHH
Confidence            345567789988777777665     333 4567876 589999999999999999999975433 222        255


Q ss_pred             HHHc--cCCCCEEEEeCCCCcc-------cccCH----HHHHHHH--c---CCCEEEEeeC-CHHH---HHHHHhhc--C
Q psy9711          77 SVAD--NSPIPVIIYNNTFVTN-------IDISV----DTLVKLA--H---HENIRGVKDT-DNIK---LANMANQT--K  132 (198)
Q Consensus        77 ~i~~--~~~~pi~lYn~P~~tg-------~~l~~----~~l~~L~--~---~p~i~giK~s-d~~~---~~~~~~~~--~  132 (198)
                      .+++  ..++||..|-.  .+|       .-++.    ..+.||+  +   .|++ +=|.+ +...   +.+.+++.  .
T Consensus       235 ~l~~~~~~~lpIhaHra--~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~~~~~  311 (391)
T cd08209         235 ALASDPEINVPIFAHPA--FAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP-YGSVALSKEEALAIAEALRRGGAF  311 (391)
T ss_pred             HHHhcCcCCcEEEecCC--cccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc-cCCcCCCHHHHHHHHHHHhCcCCC
Confidence            5555  45677765532  222       13444    4445666  3   2666 44555 4333   33333211  1


Q ss_pred             CCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711         133 DLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK  180 (198)
Q Consensus       133 ~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd  180 (198)
                      .+-|.+.+|.-.  .+...+ ..|-|=++...+.++  |       +.+++-|+++.+|.
T Consensus       312 k~~~Pv~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~  371 (391)
T cd08209         312 KGVFPVPSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAVLAGE  371 (391)
T ss_pred             CCceEecCCCCChhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHHhcCC
Confidence            345777776432  233333 356554444333332  2       57788888888885

Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=93.70  E-value=2.7  Score=35.74  Aligned_cols=81  Identities=11%  Similarity=0.057  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhc-CCeEEEeCCCC-------cHHHHHHHHHHHHhcCCCEEEE--cCCCCcC--CCCCHHHHHHHHHHHH
Q psy9711          12 KLKIISTLRQET-KKTIIAGTYCE-------STRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYEHFISVA   79 (198)
Q Consensus        12 r~~l~~~~~~~~-~~pvi~gv~~~-------~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~--~~~~~~~i~~y~~~i~   79 (198)
                      -.++++...+.- +.||++.++.+       +.+|-.+.++.+.+ .||++-+  +.|..-.  ...+++.+.+..+.|-
T Consensus       121 ~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~  199 (335)
T TIGR01036       121 ADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVK  199 (335)
T ss_pred             HHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence            334444444433 78888887665       45777777777766 4999887  5665421  1124677777777777


Q ss_pred             ccCC-------CCEEEEeCCC
Q psy9711          80 DNSP-------IPVIIYNNTF   93 (198)
Q Consensus        80 ~~~~-------~pi~lYn~P~   93 (198)
                      +.++       +||++==.|.
T Consensus       200 ~~~~~~~~~~~~Pv~vKLsP~  220 (335)
T TIGR01036       200 QEQDGLRRVHRVPVLVKIAPD  220 (335)
T ss_pred             HHHHhhhhccCCceEEEeCCC
Confidence            6665       9999866664

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=93.69  E-value=1.2  Score=36.72  Aligned_cols=50  Identities=22%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEE
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVII   88 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~l   88 (198)
                      .+..+++++.+.++|++.+.+.-. ....+  |+++.++++.+.+..+ +|+-+
T Consensus       150 ~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~--P~~v~~lv~~l~~~~~~~~l~~  200 (273)
T cd07941         150 PEYALATLKAAAEAGADWLVLCDT-NGGTL--PHEIAEIVKEVRERLPGVPLGI  200 (273)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecC-CCCCC--HHHHHHHHHHHHHhCCCCeeEE
Confidence            444556666666666665443322 22222  6666666666655554 55544

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=93.59  E-value=1.4  Score=36.13  Aligned_cols=148  Identities=9%  Similarity=0.044  Sum_probs=76.7

Q ss_pred             EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          29 AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        29 ~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      +.+.....+++.+.++.+++.|.. +.+.+-.-+..+  ++.+.+..+.+.+. +...+  ..+...| .++|+.+.++.
T Consensus       101 i~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~~a~~~~--~~~~~~~~~~~~~~-g~~~i--~l~DT~G-~~~P~~v~~lv  173 (266)
T cd07944         101 VAFHKHEFDEALPLIKAIKEKGYE-VFFNLMAISGYS--DEELLELLELVNEI-KPDVF--YIVDSFG-SMYPEDIKRII  173 (266)
T ss_pred             EecccccHHHHHHHHHHHHHCCCe-EEEEEEeecCCC--HHHHHHHHHHHHhC-CCCEE--EEecCCC-CCCHHHHHHHH
Confidence            355666788999999999999975 444333333444  88888888888753 43333  3333455 45666555544


Q ss_pred             -c----CC--CEEEEeeC-CHHH-HHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEEecccccchHHHHHHHHHH-Hc
Q psy9711         109 -H----HE--NIRGVKDT-DNIK-LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLA-KA  178 (198)
Q Consensus       109 -~----~p--~i~giK~s-d~~~-~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~-~~  178 (198)
                       .    .+  --+|+--- |... +.+.+.. ...+..++.+.        ..|.-+   +.+|..-|.++..++.. ..
T Consensus       174 ~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA-~~aGa~~vd~s--------~~G~G~---~aGN~~~E~~v~~l~~~~~~  241 (266)
T cd07944         174 SLLRSNLDKDIKLGFHAHNNLQLALANTLEA-IELGVEIIDAT--------VYGMGR---GAGNLPTELLLDYLNNKFGK  241 (266)
T ss_pred             HHHHHhcCCCceEEEEeCCCccHHHHHHHHH-HHcCCCEEEEe--------cccCCC---CcCcHHHHHHHHHHHHhhcc
Confidence             2    33  33455444 4321 2222211 11122222221        111111   35566667766655543 22


Q ss_pred             C-CHHHHHHHH-HHhhchh
Q psy9711         179 G-KWEEAMKLQ-HRLVKPD  195 (198)
Q Consensus       179 g-d~~~A~~l~-~~~~~l~  195 (198)
                      | |.+...++- +.+.|++
T Consensus       242 ~~dl~~l~~~~~~~~~~~~  260 (266)
T cd07944         242 KYNLEPVLELIDEYIAPLK  260 (266)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            2 566666655 5555554

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PRK09490 metH B12-dependent methionine synthase; Provisional

Probab=93.56  E-value=5  Score=39.96  Aligned_cols=173  Identities=11%  Similarity=0.019  Sum_probs=103.4

Q ss_pred             CHHHHHHHHHHHHHh----c-CCeEEEeCCCCc------HHHHH-HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQE----T-KKTIIAGTYCES------TRATI-DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         8 t~~Er~~l~~~~~~~----~-~~pvi~gv~~~~------~~~~i-~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +..|-+..+..+.+.    . ++||++.++-..      .-+.+ .........|++++-+-.-    ..  ++++..+.
T Consensus       188 d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avGlNCs----~G--P~~m~~~l  261 (1229)
T PRK09490        188 DTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKPLSIGLNCA----LG--ADELRPYV  261 (1229)
T ss_pred             CHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCCCEEEEcCC----Cc--HHHHHHHH
Confidence            456667777666554    2 789988654311      11122 2223334678887665421    12  89999999


Q ss_pred             HHHHccCCCCEEEEeCCCC----cccccCHHHHHHHH----cCC--CEEEEeeC-CHHHHHHHHhhc--CCCC-------
Q psy9711          76 ISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLA----HHE--NIRGVKDT-DNIKLANMANQT--KDLN-------  135 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~----~~p--~i~giK~s-d~~~~~~~~~~~--~~~~-------  135 (198)
                      +.+++.++.|+++|-|-+.    ..++.+|+.+.+..    +..  ||+|=-.. ++.+++.+.+..  ..++       
T Consensus       262 ~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~  341 (1229)
T PRK09490        262 EELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPV  341 (1229)
T ss_pred             HHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCc
Confidence            9999989999999987432    35678888776555    334  89999888 888887665321  1121       


Q ss_pred             eEEEecChhhHHHHhhcCCC-eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         136 FSVFAGSAGYLLSGLLVGCA-GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       136 ~~v~~G~d~~~~~~l~~G~~-G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      ..+.+|.....     .+-+ .++...--+.|--..++.++++++|++.|.+.-.+.
T Consensus       342 ~~~~S~~~~~~-----~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~q  393 (1229)
T PRK09490        342 ACRLSGLEPLN-----IDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQ  393 (1229)
T ss_pred             ceeeecceEEe-----ecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHH
Confidence            12344443322     1211 111111122333347888999999999988765443

>PRK08227 autoinducer 2 aldolase; Validated

Probab=93.54  E-value=0.51  Score=38.78  Aligned_cols=64  Identities=11%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      +-++.+++.+++||++ |=...+.++.+++++.+.+.|+.++.+---.|..++  +..+.+-.+.|.
T Consensus       182 ~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~--p~~~~~al~~IV  246 (264)
T PRK08227        182 EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH--PVAMIKAVHAVV  246 (264)
T ss_pred             HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC--HHHHHHHHHHHH
Confidence            3455566655888754 555557889999999999999999999999898877  888888888776

>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=93.54  E-value=1.5  Score=36.56  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             HHHHHHHHhc-CCeEEEeCCCCcHHHH-HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          14 KIISTLRQET-KKTIIAGTYCESTRAT-IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~-i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ++.+.+.+.- |.--++.+--.+.+.+ .+.-|.+.+.|..++.+.|+.-.... +++.+.. .-+.|+..++||++|.-
T Consensus        88 ~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~-~~~~~~p-i~~~a~~~gvpv~ihtG  165 (293)
T COG2159          88 DLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYP-DDPRLYP-IYEAAEELGVPVVIHTG  165 (293)
T ss_pred             HHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCC-CChHHHH-HHHHHHHcCCCEEEEeC
Confidence            4555555444 4444444443333434 55556666789999999988865433 1444343 44455678999999876


Q ss_pred             CCCcccc-----cCHHHHHHHH-cCCCEE
Q psy9711          92 TFVTNID-----ISVDTLVKLA-HHENIR  114 (198)
Q Consensus        92 P~~tg~~-----l~~~~l~~L~-~~p~i~  114 (198)
                      +...+..     ..+-.+..++ ++|++.
T Consensus       166 ~~~~~~~~~~~~~~p~~~~~va~~fP~l~  194 (293)
T COG2159         166 AGPGGAGLEKGHSDPLYLDDVARKFPELK  194 (293)
T ss_pred             CCCCCcccccCCCCchHHHHHHHHCCCCc
Confidence            5444332     3345778888 688743

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=93.54  E-value=1.5  Score=37.35  Aligned_cols=54  Identities=9%  Similarity=0.126  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHHhcC-----CeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711           8 TEEEKLKIISTLRQETK-----KTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYY   61 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~-----~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y   61 (198)
                      ..+.-.++++.+++.++     +||++=++...+ ++..+.++.++++|+|++.+.....
T Consensus       190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~  249 (344)
T PRK05286        190 YGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTL  249 (344)
T ss_pred             CHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcc
Confidence            34555678888888774     999998885433 4789999999999999999997653

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=93.50  E-value=1.6  Score=37.32  Aligned_cols=81  Identities=7%  Similarity=-0.039  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE   73 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~   73 (198)
                      ..|.+|-.+.+..+++.+   +..|.+.+         +..+.+..+++++.+.++|+|.+.+.-.. ...+  |.++.+
T Consensus       154 ~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~-G~a~--P~~v~~  230 (347)
T PLN02746        154 NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTI-GVGT--PGTVVP  230 (347)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCc-CCcC--HHHHHH
Confidence            467777777666666666   56664222         34467889999999999999987776544 3333  999999


Q ss_pred             HHHHHHccCCC-CEEEE
Q psy9711          74 HFISVADNSPI-PVIIY   89 (198)
Q Consensus        74 y~~~i~~~~~~-pi~lY   89 (198)
                      +++.+.+..+. ||-++
T Consensus       231 lv~~l~~~~~~~~i~~H  247 (347)
T PLN02746        231 MLEAVMAVVPVDKLAVH  247 (347)
T ss_pred             HHHHHHHhCCCCeEEEE
Confidence            99999888774 55554

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=93.50  E-value=0.79  Score=38.90  Aligned_cols=113  Identities=13%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEE----eCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCC-----CcCCC--CCHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQETKKTIIA----GTYC-ESTRATIDLTQKAAKAGANAALILCPY-----YFQKK--MTEDLIYEHF   75 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~----gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~-----y~~~~--~~~~~i~~y~   75 (198)
                      .++.-.++++.+.+.+.+||.+    |+.+ .+..++++.++.++++|+|++.+....     |....  ..+.--.+++
T Consensus       117 ~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i  196 (333)
T PRK11815        117 EPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRV  196 (333)
T ss_pred             CHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHH
Confidence            3444556777776655667765    5443 335788999999999999999987432     11000  0011124567


Q ss_pred             HHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711          76 ISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA  128 (198)
Q Consensus        76 ~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~  128 (198)
                      +.+.+.+ ++||+.      .|--.+++.+.++.+  ++.|+=..     |+..+.++.
T Consensus       197 ~~v~~~~~~iPVI~------nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~  247 (333)
T PRK11815        197 YRLKRDFPHLTIEI------NGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVD  247 (333)
T ss_pred             HHHHHhCCCCeEEE------ECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHH
Confidence            7788775 799754      344568888888775  24555444     665555543

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=93.49  E-value=1  Score=37.33  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEEEeCCCC-----------cHHHHHHHHHHHHh-cCCCEEEEc-CC---CCcC-C
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTIIAGTYCE-----------STRATIDLTQKAAK-AGANAALIL-CP---YYFQ-K   64 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~-----------~~~~~i~~a~~a~~-~Gad~v~~~-~P---~y~~-~   64 (198)
                      ..|+.+|..+..+.+++.+   ++.|=.=+|..           .+-...+.++.+.+ .|+|.+.+. .|   .|-+ +
T Consensus       106 s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~  185 (282)
T TIGR01859       106 SHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEP  185 (282)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCC
Confidence            5689999999999999887   56553211110           00113444455554 799998874 33   3322 2


Q ss_pred             CCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CH
Q psy9711          65 KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DN  121 (198)
Q Consensus        65 ~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~  121 (198)
                      ..+    ++..++|.+.+++|++++-     |..++.+.+.++.+. ++.+|=.. ++
T Consensus       186 ~l~----~e~L~~i~~~~~iPlv~hG-----gSGi~~e~i~~~i~~-Gi~kiNv~T~l  233 (282)
T TIGR01859       186 GLD----FERLKEIKELTNIPLVLHG-----ASGIPEEQIKKAIKL-GIAKINIDTDC  233 (282)
T ss_pred             ccC----HHHHHHHHHHhCCCEEEEC-----CCCCCHHHHHHHHHc-CCCEEEECcHH
Confidence            222    4566888888899999865     335778888888866 57776666 44

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=93.48  E-value=1.2  Score=37.99  Aligned_cols=96  Identities=17%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhc----C----CeEEEeC--C-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC-CHHH
Q psy9711           9 EEEKLKIISTLRQET----K----KTIIAGT--Y-------CESTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDL   70 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~----~----~pvi~gv--~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~-~~~~   70 (198)
                      .+-|.+++..+++++    +    .++.+|+  +       +.+.+|+++.++.+++.|+|.+-+....+..... ....
T Consensus       190 lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~  269 (353)
T cd04735         190 LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDD  269 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcc
Confidence            466776666655555    3    3344443  2       3457899999999999999999998765433210 0111


Q ss_pred             HHHHHHHHHccC--CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          71 IYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        71 i~~y~~~i~~~~--~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      -..+.+.+.+..  ++||+.      .|.--+++...++.+.
T Consensus       270 ~~~~~~~ik~~~~~~iPVi~------~Ggi~t~e~ae~~l~~  305 (353)
T cd04735         270 NQTIMELVKERIAGRLPLIA------VGSINTPDDALEALET  305 (353)
T ss_pred             hHHHHHHHHHHhCCCCCEEE------ECCCCCHHHHHHHHHc
Confidence            233444555544  688875      3444478888877743

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=93.42  E-value=0.72  Score=40.32  Aligned_cols=54  Identities=11%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      ..-.++.-.++++.+.+..++||++=++. +..+..++++.++++|+|++.+..-
T Consensus       149 ~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~Gadgi~~~Nt  202 (420)
T PRK08318        149 VGQVPELVEMYTRWVKRGSRLPVIVKLTP-NITDIREPARAAKRGGADAVSLINT  202 (420)
T ss_pred             ccCCHHHHHHHHHHHHhccCCcEEEEcCC-CcccHHHHHHHHHHCCCCEEEEecc
Confidence            33456677778888877668999998885 5566889999999999999997543

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=93.40  E-value=1  Score=36.31  Aligned_cols=79  Identities=11%  Similarity=0.166  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEe---CCC--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAG---TYC--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~g---v~~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      +.++..+.+...++.+   +.++.+.   +..  .+.++..+.++.+.++|++.+.+. +.....+  |+++.++++.+.
T Consensus       109 ~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~--P~~v~~li~~l~  185 (265)
T cd03174         109 SREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK-DTVGLAT--PEEVAELVKALR  185 (265)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec-hhcCCcC--HHHHHHHHHHHH
Confidence            3344444444444444   5555444   455  678889999999999999988764 4444444  999999999999


Q ss_pred             ccCC-CCEEEE
Q psy9711          80 DNSP-IPVIIY   89 (198)
Q Consensus        80 ~~~~-~pi~lY   89 (198)
                      +..+ +|+-+|
T Consensus       186 ~~~~~~~~~~H  196 (265)
T cd03174         186 EALPDVPLGLH  196 (265)
T ss_pred             HhCCCCeEEEE
Confidence            8886 777764

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK00115 hemE uroporphyrinogen decarboxylase; Validated

Probab=93.27  E-value=4.6  Score=34.28  Aligned_cols=126  Identities=17%  Similarity=0.085  Sum_probs=72.4

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH----HHHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH----FISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y----~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      ++.++...++|||++++.-|.-...+  ++...+|    .+.|.+..     +.|++ |..- .+     ...+..+.+.
T Consensus       189 ~~~~~~~~eaGad~i~i~d~~~~~ls--p~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~cg-~~-----~~~~~~~~~~  259 (346)
T PRK00115        189 IAYLNAQIEAGAQAVQIFDSWAGALS--PADYREFVLPYMKRIVAELKREHPDVPVI-LFGK-GA-----GELLEAMAET  259 (346)
T ss_pred             HHHHHHHHHcCCCEEEEecCccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEcC-Cc-----HHHHHHHHhc
Confidence            55666667899999999888443333  7776644    47788766     23444 3322 12     2346667764


Q ss_pred             C-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh--------H----HHHhh-cCCCeEEecccccch-----HHHH
Q psy9711         111 E-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY--------L----LSGLL-VGCAGGINALSAVLG-----GPIC  170 (198)
Q Consensus       111 p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~--------~----~~~l~-~G~~G~is~~~n~~P-----~~~~  170 (198)
                      + +++++=.. |+....+.+    +++..+..+.+..        +    ...+. .+..|+|.+.++-+|     +-+.
T Consensus       260 ~~~~is~d~~~dl~~~k~~~----g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~  335 (346)
T PRK00115        260 GADVVGLDWTVDLAEARRRV----GDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVK  335 (346)
T ss_pred             CCCEEeeCCCCCHHHHHHHc----CCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHH
Confidence            3 77777666 877665443    3444444443321        1    11232 245677776665443     6666


Q ss_pred             HHHHHHHc
Q psy9711         171 ELYDLAKA  178 (198)
Q Consensus       171 ~l~~~~~~  178 (198)
                      .++++.++
T Consensus       336 a~v~a~~~  343 (346)
T PRK00115        336 ALVEAVHE  343 (346)
T ss_pred             HHHHHHHH
Confidence            77766653

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=93.24  E-value=2.2  Score=34.42  Aligned_cols=97  Identities=8%  Similarity=0.033  Sum_probs=63.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      |+...-+++--.++++.+.+. ++||.+=+... +..+++++++.++++|+|++.+- ..|...   +.--.++.++|.+
T Consensus       113 G~~Ll~dp~~l~~iv~av~~~-~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd-~~~~g~---~~a~~~~I~~i~~  187 (231)
T TIGR00736       113 GQELLKNKELLKEFLTKMKEL-NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD-AMYPGK---PYADMDLLKILSE  187 (231)
T ss_pred             chhhcCCHHHHHHHHHHHHcC-CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe-eCCCCC---chhhHHHHHHHHH
Confidence            444445666666777777733 88998866542 34578999999999999999885 333211   1123567777777


Q ss_pred             cCC-CCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          81 NSP-IPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        81 ~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +++ +||+-      .|--.+.+...+..+
T Consensus       188 ~~~~ipIIg------NGgI~s~eda~e~l~  211 (231)
T TIGR00736       188 EFNDKIIIG------NNSIDDIESAKEMLK  211 (231)
T ss_pred             hcCCCcEEE------ECCcCCHHHHHHHHH
Confidence            774 88665      344456666666554

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=93.19  E-value=4.3  Score=33.70  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC---------CCCcCCCCCHHHHHHHHHHHHcc
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC---------PYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~---------P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      |+..-++...+..+.-++.|+-+.      -.++.++++|..++-++.         |-....  |-+++.+.-++|++.
T Consensus         5 ~~~~~fR~l~~~~~~~~~pg~~d~------~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~--t~~e~~~~vrrI~~a   76 (289)
T COG2513           5 EPGAAFRALHASGDPLVLPGAWDA------GSALLAERAGFKALYLSGAGVAASLGLPDLGIT--TLDEVLADARRITDA   76 (289)
T ss_pred             cHHHHHHHHHhCCCCEEecCCcCH------HHHHHHHHcCCeEEEeccHHHHHhcCCCccccc--cHHHHHHHHHHHHhh
Confidence            566666666655455667777653      246778899999998874         333333  489999999999999


Q ss_pred             CCCCEEEEeCCCCcccccCHH-HHHHHHcCCCEEEEeeC-----------------CH----HHHHHHHhhcCCCCeEEE
Q psy9711          82 SPIPVIIYNNTFVTNIDISVD-TLVKLAHHENIRGVKDT-----------------DN----IKLANMANQTKDLNFSVF  139 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~-~l~~L~~~p~i~giK~s-----------------d~----~~~~~~~~~~~~~~~~v~  139 (198)
                      +++||++==.-+ .|..+... ++.++. --++.|+-.+                 +.    .++........+++|.+.
T Consensus        77 ~~lPv~vD~dtG-fG~~~nvartV~~~~-~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~  154 (289)
T COG2513          77 VDLPVLVDIDTG-FGEALNVARTVRELE-QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVII  154 (289)
T ss_pred             cCCceEEeccCC-CCcHHHHHHHHHHHH-HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            999999854322 33333332 333333 2345554333                 22    233333322334678776


Q ss_pred             ecChhhHH-----------HHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711         140 AGSAGYLL-----------SGLLVGCAGGINALSAVLGGPICELYDLAK  177 (198)
Q Consensus       140 ~G~d~~~~-----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~~  177 (198)
                      .=.|..+.           ....+|+|++..-.-+ -++.+.++.++++
T Consensus       155 ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-~~e~i~~f~~av~  202 (289)
T COG2513         155 ARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-DLEEIRAFAEAVP  202 (289)
T ss_pred             eehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-CHHHHHHHHHhcC
Confidence            54443322           2257899988643322 3778888877765

>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain

Probab=93.15  E-value=2.1  Score=36.94  Aligned_cols=149  Identities=15%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     +..+ .+.+++ ++++.+++++.+++.|+.++|+.+-.+ ..+        -++
T Consensus       168 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~-G~~--------~l~  237 (366)
T cd08148         168 DQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTA-GTFEIIERAERALELGANMLMVDVLTA-GFS--------ALQ  237 (366)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEecccc-chH--------HHH
Confidence            344567789976655555554     4344 557776 569999999999999999999864443 222        144


Q ss_pred             HHHcc--CCCCEEEEeCCCCccc-------ccCHHHHH---HHH--c---CCCEEEEeeC-CHH---HHHHHHhhc---C
Q psy9711          77 SVADN--SPIPVIIYNNTFVTNI-------DISVDTLV---KLA--H---HENIRGVKDT-DNI---KLANMANQT---K  132 (198)
Q Consensus        77 ~i~~~--~~~pi~lYn~P~~tg~-------~l~~~~l~---~L~--~---~p~i~giK~s-d~~---~~~~~~~~~---~  132 (198)
                      .+++.  .++||..|-.  .+|.       -++.-++.   ||+  +   .|+..| |.+ +.+   ++.+.+++.   .
T Consensus       238 ~l~~~~~~~l~IhaHrA--~~ga~~~~~~~G~~~~~l~kl~RLaGaD~~~~~t~~G-k~~~~~~~~~~~~~~~~~~~~~~  314 (366)
T cd08148         238 ALAEDFEIDLPIHVHRA--MHGAVTRSKFHGISMLVLAKLLRMAGGDFIHTGTVVG-KMALEREEALGIADALTDDWAGF  314 (366)
T ss_pred             HHHHhCcCCcEEEeccc--cccccccCCCCCcCHHHHHHHHHHcCCCccccCCccc-CcCCCHHHHHHHHHHHhCcccCC
Confidence            45542  4677766533  2221       14554444   555  2   367744 555 433   333333221   1


Q ss_pred             CCCeEEEecChh--hHHHHh-hcCCCeEEeccccc
Q psy9711         133 DLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAV  164 (198)
Q Consensus       133 ~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~  164 (198)
                      .+-|.+.+|.-.  .+.+.+ ..|-|=++...+.+
T Consensus       315 k~~~Pv~sgG~~~~~vp~~~~~~G~Dvil~~GGgi  349 (366)
T cd08148         315 KRVFPVASGGIHPGLVPGILRDFGIDVILQAGGGI  349 (366)
T ss_pred             CCceEeccCCCChhHHHHHHHHhCCcEEEEcCccc
Confidence            234667666432  232332 35766444444444

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=93.06  E-value=2  Score=36.24  Aligned_cols=115  Identities=11%  Similarity=0.132  Sum_probs=72.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeC--CC---CcHHHHHHHHHHHHhcCCCEEEEcCCCC----cCCCC---CHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGT--YC---ESTRATIDLTQKAAKAGANAALILCPYY----FQKKM---TEDLIY   72 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y----~~~~~---~~~~i~   72 (198)
                      ..-.++.-.++++.+++.+++||.+=+  +.   .+.++++++++.+++.|++++.+.+-.-    +.+..   ...--.
T Consensus       104 Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~  183 (318)
T TIGR00742       104 LMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRY  183 (318)
T ss_pred             hhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhH
Confidence            334566667788888876677776643  32   2347889999999999999998876531    11110   011123


Q ss_pred             HHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711          73 EHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM  127 (198)
Q Consensus        73 ~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~  127 (198)
                      ++.+++.+.+ ++||+.      .|--.+++...+..+  ++.|+=-+     |+.-+.++
T Consensus       184 ~~i~~vk~~~~~ipVi~------NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~  236 (318)
T TIGR00742       184 ERVYQLKKDFPHLTIEI------NGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANV  236 (318)
T ss_pred             HHHHHHHHhCCCCcEEE------ECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHH
Confidence            4556777777 799875      355567887777663  45566555     55555544

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=93.05  E-value=2.2  Score=37.29  Aligned_cols=165  Identities=18%  Similarity=0.118  Sum_probs=94.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ....-..+||...+..+++.+     +.. -.+.+++ ++.+.+++++.+++.|+.++|+.+-.+. .+        -++
T Consensus       180 dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~mv~~~~~G-~~--------~~~  249 (407)
T TIGR03332       180 ETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-RTFDLKDKAKRAAELGADVLLFNVFAYG-LD--------VLQ  249 (407)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCC-CHHHHHHHHHHHHHhCCCEEEEeccccC-hH--------HHH
Confidence            344566789988777777776     333 4557775 5788999999999999999999755432 21        245


Q ss_pred             HHHc--cCCCCEEEEeCCCCcc-------cccCH----HHHHHHH--c---CCCEEEEeeC-CHHHHHHH---Hhhc---
Q psy9711          77 SVAD--NSPIPVIIYNNTFVTN-------IDISV----DTLVKLA--H---HENIRGVKDT-DNIKLANM---ANQT---  131 (198)
Q Consensus        77 ~i~~--~~~~pi~lYn~P~~tg-------~~l~~----~~l~~L~--~---~p~i~giK~s-d~~~~~~~---~~~~---  131 (198)
                      .+++  ..++||..+-  ..+|       .-++.    ..+.||+  +   .|++ +=|.+ +.....++   ++.-   
T Consensus       250 ~l~~~~~~~lpihaHr--a~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~p~~~  326 (407)
T TIGR03332       250 SLAEDDEIPVPIMAHP--AVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSLFPSP-YGSVALEREDALAISKELTEDDAP  326 (407)
T ss_pred             HHHhcCCCCcEEEEec--CcccccccCCCCcccHHHHHHHHHHhcCcCccccCCc-ccCCCCCHHHHHHHHHHHhccccC
Confidence            5554  3467774432  2222       13443    4455666  3   3676 55666 44433333   3211   


Q ss_pred             CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711         132 KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK  180 (198)
Q Consensus       132 ~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd  180 (198)
                      ..+-|.+.+|.-+  .+...+ ..|-|-++...+.++         -+.+++-|+++.+|.
T Consensus       327 ~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~  387 (407)
T TIGR03332       327 FKKTFAVPSAGIHPGMVPLIMRDFGIDHIINAGGGIHGHPNGAQGGGRAFRAAIDAVLEAK  387 (407)
T ss_pred             CCccEEecCCCcChhHHHHHHHHhCCceEEecCcccccCCCCchhhHHHHHHHHHHHhcCC
Confidence            1234777766443  233332 356554443333332         256777788887774

Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=93.03  E-value=1.8  Score=37.12  Aligned_cols=82  Identities=15%  Similarity=0.076  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|..+.   +..+.+..++.++.+.++|+|.+.+.-- ....  +|+++.+.++.+.
T Consensus       105 ~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~--~P~~v~~lv~~l~  181 (365)
T TIGR02660       105 RKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGIL--DPFSTYELVRALR  181 (365)
T ss_pred             CcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCC--CHHHHHHHHHHHH
Confidence            356666665555555655   56666654   3445788999999999999998765433 3333  4999999999999


Q ss_pred             ccCCCCEEEEe
Q psy9711          80 DNSPIPVIIYN   90 (198)
Q Consensus        80 ~~~~~pi~lYn   90 (198)
                      +..++|+-+|-
T Consensus       182 ~~~~v~l~~H~  192 (365)
T TIGR02660       182 QAVDLPLEMHA  192 (365)
T ss_pred             HhcCCeEEEEe
Confidence            98888887763

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=93.02  E-value=1.9  Score=35.58  Aligned_cols=21  Identities=5%  Similarity=0.235  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEE
Q psy9711          36 TRATIDLTQKAAKAGANAALI   56 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~   56 (198)
                      .+..++.++.+.+.|+|.+-+
T Consensus       148 ~~~~~~~~~~~~~~Ga~~i~l  168 (274)
T cd07938         148 PERVAEVAERLLDLGCDEISL  168 (274)
T ss_pred             HHHHHHHHHHHHHcCCCEEEE
Confidence            344444444444444444333

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>KOG2335|consensus

Probab=92.97  E-value=1.4  Score=37.61  Aligned_cols=113  Identities=18%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhcCCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQETKKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISV   78 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i   78 (198)
                      ||=+....++=-.++++.+....++||-+=+ ...+.++++++++..+++|++-+-+..-.=. +...++--=.+++++|
T Consensus       118 yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v  197 (358)
T KOG2335|consen  118 YGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAV  197 (358)
T ss_pred             ccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHH
Confidence            4555556666666677777666577765533 3368999999999999999999988753311 1000122235788888


Q ss_pred             HccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          79 ADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        79 ~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      -+..+ +|++.      .|.-.+.+...+..+..++.||=-.
T Consensus       198 ~~~~~~ipvia------NGnI~~~~d~~~~~~~tG~dGVM~a  233 (358)
T KOG2335|consen  198 RENVPDIPVIA------NGNILSLEDVERCLKYTGADGVMSA  233 (358)
T ss_pred             HHhCcCCcEEe------eCCcCcHHHHHHHHHHhCCceEEec
Confidence            88886 99987      5777788888888888888887665

>PLN02489 homocysteine S-methyltransferase

Probab=92.96  E-value=4.4  Score=34.49  Aligned_cols=112  Identities=15%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      +.+|-+.+++.+.+.. ++|+++.++.         .+..++++.+..  ..+++++.+-.     -+  ++.+..-.+.
T Consensus       191 ~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC-----~~--p~~~~~~l~~  261 (335)
T PLN02489        191 NKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVVAVGINC-----TP--PRFIHGLILS  261 (335)
T ss_pred             ChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecC-----CC--HHHHHHHHHH
Confidence            4567777777776665 7898887642         234555555432  23566666653     12  7778888888


Q ss_pred             HHccCCCCEEEEeCCCCc----------ccccCHHHHHHHH----cC-CCEEEEeeC-CHHHHHHHH
Q psy9711          78 VADNSPIPVIIYNNTFVT----------NIDISVDTLVKLA----HH-ENIRGVKDT-DNIKLANMA  128 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~t----------g~~l~~~~l~~L~----~~-p~i~giK~s-d~~~~~~~~  128 (198)
                      +...++.|+++|-|.+..          ..+++++.+.+.+    +. -+|+|=-.. .+..++.+.
T Consensus       262 l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~  328 (335)
T PLN02489        262 IRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAIS  328 (335)
T ss_pred             HHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHH
Confidence            888888999999884211          2345666555554    22 467777666 777776655

>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated

Probab=92.96  E-value=5  Score=33.81  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhc--CCeEEEeCCCCcH------------------------------HHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711          13 LKIISTLRQET--KKTIIAGTYCEST------------------------------RATIDLTQKAAKAGANAALILCPY   60 (198)
Q Consensus        13 ~~l~~~~~~~~--~~pvi~gv~~~~~------------------------------~~~i~~a~~a~~~Gad~v~~~~P~   60 (198)
                      .+.++.+.+..  ++||+..++++=|                              +-.++.++...++|||++.+.-|.
T Consensus       124 leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~  203 (339)
T PRK06252        124 LEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPS  203 (339)
T ss_pred             HHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            34455555555  5889888777621                              233667777789999999999886


Q ss_pred             CcCCCCCHHHHH----HHHHHHHccCCC-CEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC-CHHHHHHHHhhcCC
Q psy9711          61 YFQKKMTEDLIY----EHFISVADNSPI-PVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT-DNIKLANMANQTKD  133 (198)
Q Consensus        61 y~~~~~~~~~i~----~y~~~i~~~~~~-pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s-d~~~~~~~~~~~~~  133 (198)
                      -...-.+++...    .|++.+.+...- +.++|..    |.  ....+..+.+.+ ++..+=.. |+....+.+    +
T Consensus       204 a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~c----G~--~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~----g  273 (339)
T PRK06252        204 ASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHIC----GD--LTSILEEMADCGFDGISIDEKVDVKTAKENV----G  273 (339)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEEC----CC--chHHHHHHHhcCCCeeccCCCCCHHHHHHHh----C
Confidence            432112366655    455888887754 6666654    22  134567777643 56655555 776654433    3


Q ss_pred             CCeEEEecChh
Q psy9711         134 LNFSVFAGSAG  144 (198)
Q Consensus       134 ~~~~v~~G~d~  144 (198)
                      ++..+..+.|.
T Consensus       274 ~~~~i~Gnidp  284 (339)
T PRK06252        274 DRAALIGNVST  284 (339)
T ss_pred             CCeEEEeccCc
Confidence            44555554443

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=92.95  E-value=3.8  Score=32.46  Aligned_cols=140  Identities=12%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe-
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN-   90 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn-   90 (198)
                      -.++++.+.+.+++||++|-|=.+.+++    +.+.+.||+.+++..-.+..    ++.+.+..+...++..+++=+.+ 
T Consensus        62 ~~~~i~~i~~~~~~pv~~~GGI~~~ed~----~~~~~~Ga~~vilg~~~l~~----~~~l~ei~~~~~~~i~vsid~k~~  133 (233)
T PRK00748         62 NLELIEAIVKAVDIPVQVGGGIRSLETV----EALLDAGVSRVIIGTAAVKN----PELVKEACKKFPGKIVVGLDARDG  133 (233)
T ss_pred             cHHHHHHHHHHCCCCEEEcCCcCCHHHH----HHHHHcCCCEEEECchHHhC----HHHHHHHHHHhCCCceeeeeccCC
Confidence            3456666666668999997776666665    34455799999887766543    43344333333222222222211 


Q ss_pred             ----CCCCcccccCH-HHHHHHHcC--CCEEEEeeC--------CHHHHHHHHhhcCCCCeEEE-ec-Ch--hhHHHHhh
Q psy9711          91 ----NTFVTNIDISV-DTLVKLAHH--ENIRGVKDT--------DNIKLANMANQTKDLNFSVF-AG-SA--GYLLSGLL  151 (198)
Q Consensus        91 ----~P~~tg~~l~~-~~l~~L~~~--p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~-~G-~d--~~~~~~l~  151 (198)
                          .........++ +...++.+.  ..|...-.+        |+..+.++.+ ..+  +.++ +| ..  ..+...+.
T Consensus       134 ~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~-~~~--ipvia~GGi~~~~di~~~~~  210 (233)
T PRK00748        134 KVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA-AVP--IPVIASGGVSSLDDIKALKG  210 (233)
T ss_pred             EEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH-hCC--CCEEEeCCCCCHHHHHHHHH
Confidence                11111124454 444455443  335554232        5666676653 333  3343 33 22  24556677


Q ss_pred             cC-CCeEEeccc
Q psy9711         152 VG-CAGGINALS  162 (198)
Q Consensus       152 ~G-~~G~is~~~  162 (198)
                      .| ++|++.|.+
T Consensus       211 ~g~~~gv~vg~a  222 (233)
T PRK00748        211 LGAVEGVIVGRA  222 (233)
T ss_pred             cCCccEEEEEHH
Confidence            78 999998876

>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed

Probab=92.82  E-value=1.9  Score=37.68  Aligned_cols=167  Identities=18%  Similarity=0.133  Sum_probs=95.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||......+++.+     + +--.+.+++ ++++.+++++.+++.|+.++|+.+-.+ ..+        -++
T Consensus       175 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~m~~~~~~-G~~--------al~  244 (407)
T PRK09549        175 ENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTG-RTFELKEKAKRAAEAGADALLFNVFAY-GLD--------VLQ  244 (407)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-CHHHHHHHHHHHHHcCCCeEEEecccc-chH--------HHH
Confidence            455667889988777777666     3 334557776 578999999999999999999975333 222        144


Q ss_pred             HHHc--cCCCCEEEEeCC-------CCccccc--CHHHHHHHH--c---CCCEEEEeeC-CHHH---HHHHHhhc---CC
Q psy9711          77 SVAD--NSPIPVIIYNNT-------FVTNIDI--SVDTLVKLA--H---HENIRGVKDT-DNIK---LANMANQT---KD  133 (198)
Q Consensus        77 ~i~~--~~~~pi~lYn~P-------~~tg~~l--~~~~l~~L~--~---~p~i~giK~s-d~~~---~~~~~~~~---~~  133 (198)
                      .+++  ..++||..+-.-       ...|++.  -...+.||+  +   .|++ +=|.. +...   +.+.+++.   ..
T Consensus       245 ~l~~~~~~~lpIhaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~~~~~~k  323 (407)
T PRK09549        245 SLAEDPEIPVPIMAHPAVSGAYTPSPLYGISSPLLLGKLLRYAGADFSLFPSP-YGSVALEKEEALAIAKELTEDDDPFK  323 (407)
T ss_pred             HHHhcCCCCcEEEecCCcccccccCCCCcCcHHHHHHHHHHHcCCCccccCCC-cCCcCCCHHHHHHHHHHHhccccCCC
Confidence            4454  346776644321       0123332  134455666  3   2565 45666 4433   33333221   12


Q ss_pred             CCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711         134 LNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK  180 (198)
Q Consensus       134 ~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd  180 (198)
                      +-|.+.+|.-+  .+...+ ..|-|-++...+.++         -..+++-|+++.+|.
T Consensus       324 ~~~Pv~sGG~~~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~aGa~A~rqA~ea~~~g~  382 (407)
T PRK09549        324 RSFPVPSAGIHPGLVPLLIRDFGKDVVINAGGGIHGHPNGAQGGGKAFRAAIDAVLQGK  382 (407)
T ss_pred             ccEEeecCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence            34777776543  232332 356554443333332         157778888888875

>PRK06852 aldolase; Validated

Probab=92.63  E-value=5.5  Score=33.46  Aligned_cols=160  Identities=9%  Similarity=0.028  Sum_probs=93.2

Q ss_pred             CCeEEEeCCCCc----------HHHHHHHHHHHHhcC------CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CC
Q psy9711          24 KKTIIAGTYCES----------TRATIDLTQKAAKAG------ANAALILCPYYFQKKMTEDLIYEHFISVADNS---PI   84 (198)
Q Consensus        24 ~~pvi~gv~~~~----------~~~~i~~a~~a~~~G------ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~   84 (198)
                      ++|+|+.+++.+          ....+--.+.|.++|      ||+|.+.-..- ..  .+.+.++...+|++.+   ++
T Consensus        92 ~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~--~E~~ml~~l~~v~~ea~~~Gl  168 (304)
T PRK06852         92 DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SE--YESEMLSEAAQIIYEAHKHGL  168 (304)
T ss_pred             CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC-CH--HHHHHHHHHHHHHHHHHHhCC
Confidence            689999876531          112334467788878      88888863322 22  2677777787777665   79


Q ss_pred             CEEEEeCCCCc--ccccCHHHH---HHHH-cC-CCEEEEeeC------CHHHHHHHHhhcCCCCeEEEecChh-------
Q psy9711          85 PVIIYNNTFVT--NIDISVDTL---VKLA-HH-ENIRGVKDT------DNIKLANMANQTKDLNFSVFAGSAG-------  144 (198)
Q Consensus        85 pi~lYn~P~~t--g~~l~~~~l---~~L~-~~-p~i~giK~s------d~~~~~~~~~~~~~~~~~v~~G~d~-------  144 (198)
                      |+++.=.|...  ...-.++.+   .|++ ++ ..|+=+|.+      |.+.+.++.. ..++--.++.|-..       
T Consensus       169 Pll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~-~~g~vpVviaGG~k~~~~e~L  247 (304)
T PRK06852        169 IAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL-AAGRTKVVCAGGSSTDPEEFL  247 (304)
T ss_pred             cEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH-hCCCCcEEEeCCCCCCHHHHH
Confidence            99976555421  112344444   4666 55 478888885      3678888773 44233235555322       


Q ss_pred             -hHHHHhh-cCCCeEEecccccc----h--HH-HHHHHHHHHcC-CHHHHHHHH
Q psy9711         145 -YLLSGLL-VGCAGGINALSAVL----G--GP-ICELYDLAKAG-KWEEAMKLQ  188 (198)
Q Consensus       145 -~~~~~l~-~G~~G~is~~~n~~----P--~~-~~~l~~~~~~g-d~~~A~~l~  188 (198)
                       +...++. .|+.|++.|= |+|    |  .. +..+..-+..+ ..++|.++.
T Consensus       248 ~~v~~ai~~aGa~Gv~~GR-NIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA~~~~  300 (304)
T PRK06852        248 KQLYEQIHISGASGNATGR-NIHQKPLDEAVRMCNAIYAITVEDKSVEEALKIY  300 (304)
T ss_pred             HHHHHHHHHcCCceeeech-hhhcCCCchHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence             2234567 7999988774 665    4  22 23333333333 567776654

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=92.55  E-value=4.4  Score=32.16  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEE-EeCCCCcccccCHHHHHHHHc
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVII-YNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~l-Yn~P~~tg~~l~~~~l~~L~~  109 (198)
                      |...++.-+..++.|.+.|||.+-+..++-.-.+...+.+.+-.++|.+.+ ++|+.+ +.    ++. ++.+.+.+.++
T Consensus        65 G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE----~~~-L~~~ei~~a~~  139 (211)
T TIGR00126        65 GASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIE----TGL-LTDEEIRKACE  139 (211)
T ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEe----cCC-CCHHHHHHHHH
Confidence            556677778889999999999999998874322224888889999999887 577665 33    444 67676665554


Q ss_pred             ---CCCEEEEeeC-C-------HHHHHHHHhhcCCCC--eEEEecCh--hhHHHHhhcCCC
Q psy9711         110 ---HENIRGVKDT-D-------NIKLANMANQTKDLN--FSVFAGSA--GYLLSGLLVGCA  155 (198)
Q Consensus       110 ---~p~i~giK~s-d-------~~~~~~~~~~~~~~~--~~v~~G~d--~~~~~~l~~G~~  155 (198)
                         --+...+|-| -       +.....+. +..+++  +..-.|.-  ......+.+|++
T Consensus       140 ia~eaGADfvKTsTGf~~~gat~~dv~~m~-~~v~~~v~IKaaGGirt~~~a~~~i~aGa~  199 (211)
T TIGR00126       140 ICIDAGADFVKTSTGFGAGGATVEDVRLMR-NTVGDTIGVKASGGVRTAEDAIAMIEAGAS  199 (211)
T ss_pred             HHHHhCCCEEEeCCCCCCCCCCHHHHHHHH-HHhccCCeEEEeCCCCCHHHHHHHHHHhhH
Confidence               3578888887 2       24433333 222334  43344433  234556666764

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=92.50  E-value=2.3  Score=34.38  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCeEEEeC------CCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           5 FKSTEEEKLKIISTLRQET-KKTIIAGT------YCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv------~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      ..|+.++|.++++.+.+.- ++.-=+|.      ...++.+-++++++.-++||+.||+-.
T Consensus        95 ~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEa  155 (237)
T TIGR03849        95 MEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEG  155 (237)
T ss_pred             cCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence            6789999999999999874 22222232      124568889999999999999999964

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=92.48  E-value=1.5  Score=36.50  Aligned_cols=102  Identities=11%  Similarity=0.116  Sum_probs=0.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc---------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES---------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE   68 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~---------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~   68 (198)
                      +..++.+|-.+..+.+++.+   +++|   +-.+++..         ..+.-+-.+++++.|+|.+-+.--.-...-.. 
T Consensus       105 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-  183 (283)
T PRK07998        105 GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-  183 (283)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-


Q ss_pred             HHH-HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          69 DLI-YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        69 ~~i-~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..+ ++-+++|.+++++|+++     ..|..++.+.+.+..+..
T Consensus       184 p~l~~~~l~~I~~~~~vPLVl-----HGgSG~~~e~~~~ai~~G  222 (283)
T PRK07998        184 PRIDIPLLKRIAEVSPVPLVI-----HGGSGIPPEILRSFVNYK  222 (283)
T ss_pred             CCcCHHHHHHHHhhCCCCEEE-----eCCCCCCHHHHHHHHHcC

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=92.47  E-value=4.2  Score=32.58  Aligned_cols=47  Identities=19%  Similarity=0.174  Sum_probs=34.4

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ   63 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~   63 (198)
                      .++++.+.+.+++||+++=|-.+.+++.++..    .|++++++....+..
T Consensus        60 ~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~----~G~~~v~ig~~~~~~  106 (243)
T cd04731          60 LDVVERVAEEVFIPLTVGGGIRSLEDARRLLR----AGADKVSINSAAVEN  106 (243)
T ss_pred             HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH----cCCceEEECchhhhC
Confidence            45666666666899999877777777655544    699999998766644

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine

Probab=92.44  E-value=0.89  Score=39.73  Aligned_cols=75  Identities=15%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE-EEEeCCCC--------cccccCHHHHHHHHcCC
Q psy9711          41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV-IIYNNTFV--------TNIDISVDTLVKLAHHE  111 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi-~lYn~P~~--------tg~~l~~~~l~~L~~~p  111 (198)
                      +.++.|...|+..++.. |.-.....+.+++ +++.+.++..  |+ ++++.|..        .|..+..+.+.++.+.|
T Consensus        27 ~~~~~a~~~GvTtvv~~-p~~~~~v~g~~~~-~~~~~~a~~~--p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~  102 (422)
T cd01295          27 EFAKAVLPHGTTTVIAD-PHEIANVAGVDGI-EFMLEDAKKT--PLDIFWMLPSCVPATPFETSGAELTAEDIKELLEHP  102 (422)
T ss_pred             HHHHHHHCCCcEEEEeC-CCCCCcCCCHHHH-HHHHHHHhCC--CceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcCC
Confidence            46888899999998885 4333222224544 4555555544  54 35566652        23456788889998889


Q ss_pred             CEEEEeeC
Q psy9711         112 NIRGVKDT  119 (198)
Q Consensus       112 ~i~giK~s  119 (198)
                      +|+|+|+.
T Consensus       103 ~vvglgE~  110 (422)
T cd01295         103 EVVGLGEV  110 (422)
T ss_pred             CCcEEEEe
Confidence            99999997

This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.

>TIGR01464 hemE uroporphyrinogen decarboxylase

Probab=92.41  E-value=6  Score=33.39  Aligned_cols=126  Identities=18%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH----HHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF----ISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~----~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      .++.++...++|+|++++..|.....+  +++..+|.    ++|.+..     +.|+ +|+.-. +     ...+..+++
T Consensus       182 ~~~~~~~~~eaGad~i~i~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~-~-----~~~~~~~~~  252 (338)
T TIGR01464       182 TIEYLVEQVKAGAQAVQIFDSWAGALS--PEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKG-A-----GHLLEELAE  252 (338)
T ss_pred             HHHHHHHHHHcCCCEEEEECCccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCC-c-----HHHHHHHHh
Confidence            356667667899999999887443333  77776554    6777654     3455 444321 1     245777777


Q ss_pred             CC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh--------H----HHHhhcCC--CeEEecccccch-----HH
Q psy9711         110 HE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY--------L----LSGLLVGC--AGGINALSAVLG-----GP  168 (198)
Q Consensus       110 ~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~--------~----~~~l~~G~--~G~is~~~n~~P-----~~  168 (198)
                      .+ ++.++=.. |+....+.+    +++..+..+.+..        +    ...+..+.  .|.|.++++-+|     +-
T Consensus       253 ~~~~~~s~d~~~dl~e~~~~~----~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp~en  328 (338)
T TIGR01464       253 TGADVVGLDWTVDLKEARKRV----GPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTPPEN  328 (338)
T ss_pred             cCCCEEEeCCCCCHHHHHHHh----CCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcCHHH
Confidence            55 67666555 776655443    3444444444421        1    12233222  456766665443     55


Q ss_pred             HHHHHHHHH
Q psy9711         169 ICELYDLAK  177 (198)
Q Consensus       169 ~~~l~~~~~  177 (198)
                      +..+.++.+
T Consensus       329 i~a~v~a~~  337 (338)
T TIGR01464       329 VKALVEYVH  337 (338)
T ss_pred             HHHHHHHHh
Confidence            566666544

This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=92.39  E-value=4.4  Score=31.81  Aligned_cols=111  Identities=15%  Similarity=0.095  Sum_probs=64.3

Q ss_pred             HHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc-ccccC---HHHHHHHHcCCCEEEEeeC
Q psy9711          44 QKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT-NIDIS---VDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        44 ~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t-g~~l~---~~~l~~L~~~p~i~giK~s  119 (198)
                      +.+.++|||.+.+.+-    ..  .+.+.+..+ .++..++++++-=.|... +...-   .+.+.+++..|...|.|..
T Consensus        74 ~~~~~~gad~vtvh~e----~g--~~~l~~~i~-~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~  146 (215)
T PRK13813         74 EAVFEAGAWGIIVHGF----TG--RDSLKAVVE-AAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP  146 (215)
T ss_pred             HHHHhCCCCEEEEcCc----CC--HHHHHHHHH-HHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence            6677899998887643    11  333433333 345567787664344321 11211   2233344456889999988


Q ss_pred             --CHHHHHHHHhhcCCCCeEEEec-Chh---hHHHHhhcCCCeEEeccc
Q psy9711         120 --DNIKLANMANQTKDLNFSVFAG-SAG---YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       120 --d~~~~~~~~~~~~~~~~~v~~G-~d~---~~~~~l~~G~~G~is~~~  162 (198)
                        ...++.++. +..+.++.++.| -..   .....+..|+++++.|.+
T Consensus       147 ~~~~~~i~~l~-~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~  194 (215)
T PRK13813        147 ATRPERVRYIR-SRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRS  194 (215)
T ss_pred             CCcchhHHHHH-HhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcc
Confidence              556666654 333445554433 222   256778899999998864

>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases

Probab=92.36  E-value=5.8  Score=33.11  Aligned_cols=129  Identities=18%  Similarity=0.085  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      .++.++...++|+|++.+.-|.-...-++++..    ..|++++.+..   +.|+++|..-. +     ...+..+.+.+
T Consensus       170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~-~-----~~~~~~l~~~~  243 (330)
T cd03465         170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD-T-----APILELMADLG  243 (330)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC-c-----hhHHHHHHHhC
Confidence            466677777889999999988754431136544    45557777765   47888887522 1     15567777654


Q ss_pred             -CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh-H-H------------HHhhc-CC--CeEEecccccc-----hH
Q psy9711         112 -NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY-L-L------------SGLLV-GC--AGGINALSAVL-----GG  167 (198)
Q Consensus       112 -~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~-~-~------------~~l~~-G~--~G~is~~~n~~-----P~  167 (198)
                       ++..+-.. |+....+.+    +++..+..|.|.. . .            ..+.. +.  .|+|.+.++-.     ++
T Consensus       244 ~d~~~~d~~~dl~~~~~~~----g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~e  319 (330)
T cd03465         244 ADVFSIDVTVDLAEAKKKV----GDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIE  319 (330)
T ss_pred             CCeEeecccCCHHHHHHHh----CCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCHH
Confidence             66666555 776554433    4455555555543 1 1            11221 22  56666665433     46


Q ss_pred             HHHHHHHHHH
Q psy9711         168 PICELYDLAK  177 (198)
Q Consensus       168 ~~~~l~~~~~  177 (198)
                      -+..++++++
T Consensus       320 nl~a~v~a~~  329 (330)
T cd03465         320 NIKAMIDAVR  329 (330)
T ss_pred             HHHHHHHHHh
Confidence            6666666654

Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=92.35  E-value=2.8  Score=34.29  Aligned_cols=38  Identities=11%  Similarity=0.092  Sum_probs=15.7

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      +.+.++.+++.|.. +.+.+|+-...+  ++.+.+..+.+.
T Consensus       116 ~~~~i~~a~~~G~~-v~~~~~~~~~~~--~~~~~~~~~~~~  153 (268)
T cd07940         116 AVEAVEYAKSHGLD-VEFSAEDATRTD--LDFLIEVVEAAI  153 (268)
T ss_pred             HHHHHHHHHHcCCe-EEEeeecCCCCC--HHHHHHHHHHHH
Confidence            33444444555533 333333333322  444444444443

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=92.34  E-value=2  Score=35.70  Aligned_cols=101  Identities=6%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES-----------TRATIDLTQKAAKAGANAALILCPY---YFQ   63 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~   63 (198)
                      +..|+.+|-.++.+.+++.+   ++.|   +-.+++..           ..+.-+-.+++++.|+|.+-+.--.   .++
T Consensus       105 gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~  184 (286)
T PRK12738        105 GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS  184 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC
Confidence            46789999999999999998   5555   22232110           1122334455667899988887422   122


Q ss_pred             CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..  ++=-++-.++|.+.+++|++++=     |..++.+.+.+..+..
T Consensus       185 ~~--p~Ldfd~l~~I~~~~~vPLVLHG-----gSG~~~e~~~kai~~G  225 (286)
T PRK12738        185 KT--PKIDFQRLAEIREVVDVPLVLHG-----ASDVPDEFVRRTIELG  225 (286)
T ss_pred             CC--CcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence            11  33235677788888899999964     4457788888877543

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=92.33  E-value=1.3  Score=35.32  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      |.+|-.+.++.+++.+   +..|..+.   +..+.++..+.++.+.++|+|.+.+.-- +...+  |+++.++++.+-+.
T Consensus       102 ~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~~--P~~v~~lv~~~~~~  178 (237)
T PF00682_consen  102 SREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADT-VGIMT--PEDVAELVRALREA  178 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET-TS-S---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCc-cCCcC--HHHHHHHHHHHHHh
Confidence            3344444444444444   44454443   3334566666666666666666555422 22222  66666666666666


Q ss_pred             CC-CCEEEE
Q psy9711          82 SP-IPVIIY   89 (198)
Q Consensus        82 ~~-~pi~lY   89 (198)
                      .+ +|+-+|
T Consensus       179 ~~~~~l~~H  187 (237)
T PF00682_consen  179 LPDIPLGFH  187 (237)
T ss_dssp             STTSEEEEE
T ss_pred             ccCCeEEEE
Confidence            65 555543

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=92.33  E-value=0.82  Score=36.30  Aligned_cols=72  Identities=11%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          13 LKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..+.+-+.+++   +.-+.. +-+..+.++.++.++.+.+.|+|++++.|+..       +.....++.+. ..++||+.
T Consensus        14 ~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-------~~~~~~l~~~~-~~gIpvv~   85 (257)
T PF13407_consen   14 QQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-------DSLAPFLEKAK-AAGIPVVT   85 (257)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST-------TTTHHHHHHHH-HTTSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-------HHHHHHHHHHh-hcCceEEE
Confidence            33444454444   666655 67888889999999999999999999887653       22335555544 45999999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        86 ~d~~   89 (257)
T PF13407_consen   86 VDSD   89 (257)
T ss_dssp             ESST
T ss_pred             Eecc
Confidence            9987

...

>cd03309 CmuC_like CmuC_like

Probab=92.26  E-value=6.3  Score=33.30  Aligned_cols=120  Identities=11%  Similarity=-0.004  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhc-CCCEEEEcCCCCcC--CCCCHHHHH----HHHHHHHccC----CCCEEEEeCCCCcccccCHHHHH
Q psy9711          37 RATIDLTQKAAKA-GANAALILCPYYFQ--KKMTEDLIY----EHFISVADNS----PIPVIIYNNTFVTNIDISVDTLV  105 (198)
Q Consensus        37 ~~~i~~a~~a~~~-Gad~v~~~~P~y~~--~~~~~~~i~----~y~~~i~~~~----~~pi~lYn~P~~tg~~l~~~~l~  105 (198)
                      +-.++.++...++ |+|++.+.-+.-..  .-++++...    -|+++|.+..    +.|+++|..    |..  ...+.
T Consensus       155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~c----G~~--~~~l~  228 (321)
T cd03309         155 DAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSC----GAA--ASLVP  228 (321)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeC----CCc--HHHHH
Confidence            4446666655666 99999986543221  001266555    4557888766    468888764    322  34577


Q ss_pred             HHHcCC-CEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhH--------------HHHhh-cCC-CeEEecccccch
Q psy9711         106 KLAHHE-NIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYL--------------LSGLL-VGC-AGGINALSAVLG  166 (198)
Q Consensus       106 ~L~~~p-~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~--------------~~~l~-~G~-~G~is~~~n~~P  166 (198)
                      .+.+.+ +++.+-..  |+....+.+    ++++.+..+.|..+              ...+. .|. .|+|.+.++-.|
T Consensus       229 ~~~e~g~dvl~~d~~~~dl~eak~~~----g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~  304 (321)
T cd03309         229 SMAEMGVDSWNVVMTANNTAELRRLL----GDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLP  304 (321)
T ss_pred             HHHHcCCCEEEecCCCCCHHHHHHHh----CCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCC
Confidence            777654 67776444  665554433    34444443333211              11122 353 788888876666

Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=92.20  E-value=2.6  Score=36.17  Aligned_cols=81  Identities=16%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|.++.   +..+.+..++.++.+.++|+|.+.+.-.. ...  +|+++.+.++.+.
T Consensus       104 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-G~~--~P~~v~~li~~l~  180 (363)
T TIGR02090       104 KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-GVL--TPQKMEELIKKLK  180 (363)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-Ccc--CHHHHHHHHHHHh
Confidence            346666666555555555   55665553   44567889999999999999988776544 333  4999999999999


Q ss_pred             ccCCCCEEEE
Q psy9711          80 DNSPIPVIIY   89 (198)
Q Consensus        80 ~~~~~pi~lY   89 (198)
                      +..++|+-+|
T Consensus       181 ~~~~~~l~~H  190 (363)
T TIGR02090       181 ENVKLPISVH  190 (363)
T ss_pred             cccCceEEEE
Confidence            8888887665

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=92.18  E-value=1.6  Score=36.90  Aligned_cols=49  Identities=12%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY   61 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y   61 (198)
                      ..++++.+.+..++||++=.+. ...+..+.++.+++.|+|++.+..-.+
T Consensus       153 ~~eil~~v~~~~~iPV~vKl~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~  201 (334)
T PRK07565        153 YLDILRAVKSAVSIPVAVKLSP-YFSNLANMAKRLDAAGADGLVLFNRFY  201 (334)
T ss_pred             HHHHHHHHHhccCCcEEEEeCC-CchhHHHHHHHHHHcCCCeEEEECCcC
Confidence            4467777766558999988765 445788899999999999999986643

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=92.16  E-value=6.6  Score=33.26  Aligned_cols=142  Identities=11%  Similarity=0.101  Sum_probs=84.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +.++.||+.+.++..... ++++  +++...+.+..+.+....++|  +|.+.+=+-.-     ..+.+.+..+.|.+..
T Consensus        64 hK~~~E~~~sfvrk~k~~-~L~v--~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg-----~s~~~~~~i~~i~~~~  135 (321)
T TIGR01306        64 HRFDEESRIPFIKDMQER-GLFA--SISVGVKACEYEFVTQLAEEALTPEYITIDIAHG-----HSNSVINMIKHIKTHL  135 (321)
T ss_pred             ecCCHHHHHHHHHhcccc-ccEE--EEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccC-----chHHHHHHHHHHHHhC
Confidence            346888888864332211 4444  444445777788888888888  68877754431     2677888888888888


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CH--HHHHHHHhhcCCCCeEEE-ecC--
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DN--IKLANMANQTKDLNFSVF-AGS--  142 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~--~~~~~~~~~~~~~~~~v~-~G~--  142 (198)
                      +.|.++      .|...+.+...+|.+. .+.|||.+               ..  .++..+..-....++.|+ .|.  
T Consensus       136 p~~~vi------~GnV~t~e~a~~l~~a-Gad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr  208 (321)
T TIGR01306       136 PDSFVI------AGNVGTPEAVRELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIR  208 (321)
T ss_pred             CCCEEE------EecCCCHHHHHHHHHc-CcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcC
Confidence            888655      3434588888888753 33444433               01  122222210111234444 332  


Q ss_pred             -hhhHHHHhhcCCCeEEecc
Q psy9711         143 -AGYLLSGLLVGCAGGINAL  161 (198)
Q Consensus       143 -d~~~~~~l~~G~~G~is~~  161 (198)
                       ......++.+|+++++.+.
T Consensus       209 ~~~Di~KALa~GAd~Vmig~  228 (321)
T TIGR01306       209 THGDIAKSIRFGASMVMIGS  228 (321)
T ss_pred             cHHHHHHHHHcCCCEEeech
Confidence             2356788999999988664

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=92.07  E-value=4.9  Score=31.65  Aligned_cols=152  Identities=17%  Similarity=0.148  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      +|+.++..+.++.+.+... .+++|+|+--+.+   .++.+.++|++.++  +|.+      .+++.++    |.+.++|
T Consensus        36 t~~tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e---~a~~ai~aGA~Fiv--SP~~------~~~vi~~----a~~~~i~   99 (201)
T PRK06015         36 TLRTPAALDAIRAVAAEVE-EAIVGAGTILNAK---QFEDAAKAGSRFIV--SPGT------TQELLAA----ANDSDVP   99 (201)
T ss_pred             eCCCccHHHHHHHHHHHCC-CCEEeeEeCcCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHH----HHHcCCC
Confidence            4566667777777776542 2778888765554   56788899999655  4543      5666666    3445566


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---C---HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCe
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---D---NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---d---~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G  156 (198)
                      ++    |   |. ++|..+.+-.+. ...-+|.=   .   +..+..+. .-. |++.++  .|-+ +.+...+.+|+..
T Consensus       100 ~i----P---G~-~TptEi~~A~~~-Ga~~vK~FPa~~~GG~~yikal~-~pl-p~~~l~ptGGV~~~n~~~~l~ag~~~  168 (201)
T PRK06015        100 LL----P---GA-ATPSEVMALREE-GYTVLKFFPAEQAGGAAFLKALS-SPL-AGTFFCPTGGISLKNARDYLSLPNVV  168 (201)
T ss_pred             Ee----C---CC-CCHHHHHHHHHC-CCCEEEECCchhhCCHHHHHHHH-hhC-CCCcEEecCCCCHHHHHHHHhCCCeE
Confidence            54    3   43 455544444333 22346654   1   34444443 222 555555  3443 3567788899887


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      ++. .++++|...      ..++|+++..+..+..
T Consensus       169 ~~g-gs~l~~~~~------~~~~~~~~i~~~a~~~  196 (201)
T PRK06015        169 CVG-GSWVAPKEL------VAAGDWAGITKLAAEA  196 (201)
T ss_pred             EEE-chhhCCchh------hhcccHHHHHHHHHHH
Confidence            776 455666432      4567777766655444

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=92.06  E-value=0.62  Score=38.55  Aligned_cols=85  Identities=12%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      ++++.+++..++||+ ...|+-.|.+-   +..+.++|||++++..-.+...+  ++...+.|......       ||.|
T Consensus       187 elLkei~~~~~iPVV~fAiGGI~TPed---Aa~~melGAdGVaVGSaI~ks~d--P~~~akafv~ai~~-------~~~~  254 (287)
T TIGR00343       187 ELLLEVLKLGKLPVVNFAAGGVATPAD---AALMMQLGADGVFVGSGIFKSSN--PEKLAKAIVEATTH-------YDNP  254 (287)
T ss_pred             HHHHHHHHhCCCCEEEeccCCCCCHHH---HHHHHHcCCCEEEEhHHhhcCCC--HHHHHHHHHHHHHH-------cCCH
Confidence            455666655589998 46666644333   33444689999999988876655  88877777766554       7754


Q ss_pred             CCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711          93 FVTNIDISVDTLVKLAH-H-ENIRGVKDT  119 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~-~-p~i~giK~s  119 (198)
                               +.+.+.++ + ...+|+-.+
T Consensus       255 ---------~~~~e~s~~~~~~m~g~~~~  274 (287)
T TIGR00343       255 ---------EKLAEVSKDLGEAMKGISIS  274 (287)
T ss_pred             ---------HHHHHHHccccccCCCCccc
Confidence                     46666663 4 356666554

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=92.02  E-value=2  Score=35.66  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCC------------CcHHHHHHHHHHHHhcCCCEEEEcCCC---Cc
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYC------------ESTRATIDLTQKAAKAGANAALILCPY---YF   62 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~------------~~~~~~i~~a~~a~~~Gad~v~~~~P~---y~   62 (198)
                      +..|+.+|-.+..+.+++.+   +++|=   -.+++            ++.+++.   +++++.|+|++.+.--.   .+
T Consensus       108 gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~---~Fv~~TgvD~LAvaiGt~HG~Y  184 (285)
T PRK07709        108 ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECK---HLVEATGIDCLAPALGSVHGPY  184 (285)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHH---HHHHHhCCCEEEEeecccccCc
Confidence            46789999999999999998   66652   22322            2334443   44556799988876311   11


Q ss_pred             CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          63 QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        63 ~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      +..  +.==++-.++|.+++++|++++=     |..++.+.+.+..++.
T Consensus       185 ~~~--p~L~~~~L~~I~~~~~iPLVLHG-----gSG~~~e~~~~ai~~G  226 (285)
T PRK07709        185 KGE--PNLGFAEMEQVRDFTGVPLVLHG-----GTGIPTADIEKAISLG  226 (285)
T ss_pred             CCC--CccCHHHHHHHHHHHCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence            111  22112455667888899999854     4558888998887654

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=91.99  E-value=1.2  Score=36.65  Aligned_cols=61  Identities=15%  Similarity=0.208  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-eCCCCcccccCHHHHHHH
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-NNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n~P~~tg~~l~~~~l~~L  107 (198)
                      .+++++.++..+++||+++++-..        +.   +-.+.|.+++++|++=- --|...|..+=...+.-+
T Consensus       159 a~~~i~~A~a~e~AGA~~ivlE~v--------p~---~~a~~It~~l~iP~iGIGaG~~~dGQvlV~~D~lG~  220 (263)
T TIGR00222       159 AKKLLEDALALEEAGAQLLVLECV--------PV---ELAAKITEALAIPVIGIGAGNVCDGQILVMHDALGI  220 (263)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCC--------cH---HHHHHHHHhCCCCEEeeccCCCCCceeeeHHhhcCC
Confidence            457889999999999999988533        21   44577888889998743 335555655544444444

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase

Probab=91.95  E-value=14  Score=36.76  Aligned_cols=171  Identities=15%  Similarity=0.089  Sum_probs=104.1

Q ss_pred             CCHHHHHHHHHHHHHh----c-CCeEEEe-CC---------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711           7 STEEEKLKIISTLRQE----T-KKTIIAG-TY---------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI   71 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~----~-~~pvi~g-v~---------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i   71 (198)
                      .+..|-+..+..+.+.    . ++||++. +.         +.+.++++..   .+..|++++-+-.-    .+  ++.+
T Consensus       171 ~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~---l~~~~~~avGlNCs----~g--P~~m  241 (1178)
T TIGR02082       171 FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTS---LEHAGIDMIGLNCA----LG--PDEM  241 (1178)
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHH---HhcCCCCEEEeCCC----CC--HHHH
Confidence            3556777777777654    1 7899988 21         1223344433   34678887766421    12  8999


Q ss_pred             HHHHHHHHccCCCCEEEEeCCCC----cccccCHHHHHHHH----cC--CCEEEEeeC-CHHHHHHHHhhc--CCCC---
Q psy9711          72 YEHFISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLA----HH--ENIRGVKDT-DNIKLANMANQT--KDLN---  135 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~----~~--p~i~giK~s-d~~~~~~~~~~~--~~~~---  135 (198)
                      ..+.+.+...++.|+++|-|-+.    ..++.+|+.+.+..    +.  -||+|=-.. ++.+++.+.+..  ..++   
T Consensus       242 ~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l~~~~p~~~~  321 (1178)
T TIGR02082       242 RPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAEAVKNIKPRQRP  321 (1178)
T ss_pred             HHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhhcCCCCCCC
Confidence            99999999999999999976322    24567787765554    32  589998888 888887665321  1121   


Q ss_pred             ----eEEEecChhhHHHHhhcCCC-eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         136 ----FSVFAGSAGYLLSGLLVGCA-GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       136 ----~~v~~G~d~~~~~~l~~G~~-G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                          ..+.+|....     ..+.+ ..+...--+.|--...+.++++++|++.|.+.-.+.
T Consensus       322 ~~~~~~~~s~~~~~-----~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~q  377 (1178)
T TIGR02082       322 VLYEPSRLSGLEAI-----TIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQ  377 (1178)
T ss_pred             CcccceeecCceEE-----eecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHH
Confidence                1133333322     12211 122111233444457889999999999988765443

S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=91.92  E-value=1.9  Score=35.74  Aligned_cols=101  Identities=6%  Similarity=0.133  Sum_probs=63.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES-----------TRATIDLTQKAAKAGANAALILCPY---YFQ   63 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~   63 (198)
                      +..|+.+|-.++.+.+++.+   ++.|   +-.+++..           ..+.-+-.+++++.|+|.+-+.--.   .++
T Consensus       103 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk  182 (282)
T TIGR01858       103 GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYK  182 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcC
Confidence            46789999999999999998   6665   22232110           0111233345667899988887422   122


Q ss_pred             CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..  +.==++-.++|.+.+++|++++=     |..++.+.+.+..++.
T Consensus       183 ~~--p~Ldf~~L~~I~~~~~iPLVlHG-----gSG~~~e~~~~ai~~G  223 (282)
T TIGR01858       183 KT--PKLDFDRLAEIREVVDVPLVLHG-----ASDVPDEDVRRTIELG  223 (282)
T ss_pred             CC--CccCHHHHHHHHHHhCCCeEEec-----CCCCCHHHHHHHHHcC
Confidence            11  22223566777778899999964     4457889998887654

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=91.91  E-value=1.8  Score=33.55  Aligned_cols=74  Identities=12%  Similarity=0.136  Sum_probs=49.5

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD  102 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~  102 (198)
                      +.+++.|+.  +.    +.++.|.+.|+|.+.+- |    .+  .. ..++++.+.... ++|++.      +| .++++
T Consensus        97 ~~~~i~gv~--t~----~e~~~A~~~Gad~i~~~-p----~~--~~-g~~~~~~l~~~~~~~p~~a------~G-GI~~~  155 (190)
T cd00452          97 GIPLLPGVA--TP----TEIMQALELGADIVKLF-P----AE--AV-GPAYIKALKGPFPQVRFMP------TG-GVSLD  155 (190)
T ss_pred             CCcEECCcC--CH----HHHHHHHHCCCCEEEEc-C----Cc--cc-CHHHHHHHHhhCCCCeEEE------eC-CCCHH
Confidence            788998888  33    44666778999999973 2    11  22 556888887666 477765      33 34788


Q ss_pred             HHHHHHcCCCEEEEeeC
Q psy9711         103 TLVKLAHHENIRGVKDT  119 (198)
Q Consensus       103 ~l~~L~~~p~i~giK~s  119 (198)
                      -+.++.+.+ +.++=-+
T Consensus       156 n~~~~~~~G-~~~v~v~  171 (190)
T cd00452         156 NAAEWLAAG-VVAVGGG  171 (190)
T ss_pred             HHHHHHHCC-CEEEEEc
Confidence            888888765 4444333

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=91.89  E-value=1.5  Score=35.05  Aligned_cols=75  Identities=16%  Similarity=0.099  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHH---------HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRA---------TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~---------~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ++..+.++.+++.+   ++|+|+= +-....+         ....+|.+.++|+|.+=...|.. ...  ..+-.+-+++
T Consensus       108 ~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~--t~~~~~~~~~  183 (236)
T PF01791_consen  108 DEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGA--TPEDVELMRK  183 (236)
T ss_dssp             HHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCS--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccc--cHHHHHHHHH
Confidence            44455666666666   7888877 4334444         57777888899999999998855 444  6666777888


Q ss_pred             HHccCCCC----EEE
Q psy9711          78 VADNSPIP----VII   88 (198)
Q Consensus        78 i~~~~~~p----i~l   88 (198)
                      +.+.++.|    |.+
T Consensus       184 ~~~~~~~p~~~~Vk~  198 (236)
T PF01791_consen  184 AVEAAPVPGKVGVKA  198 (236)
T ss_dssp             HHHTHSSTTTSEEEE
T ss_pred             HHHhcCCCcceEEEE
Confidence            88888888    666

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=91.87  E-value=1.2  Score=36.22  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .++++.+++..++|||++.|=.+.++    +..+.++|+|+|++..-..-..+  +..+.+.|+.-.+
T Consensus       164 ~~~I~~I~e~~~vpVI~egGI~tped----a~~AmelGAdgVlV~SAIt~a~d--P~~ma~af~~Av~  225 (248)
T cd04728         164 PYNLRIIIERADVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAIAKAKD--PVAMARAFKLAVE  225 (248)
T ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHH----HHHHHHcCCCEEEEChHhcCCCC--HHHHHHHHHHHHH
Confidence            34555565555899999876655554    45667799999999988875455  8999999987665

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=91.85  E-value=3.3  Score=34.96  Aligned_cols=53  Identities=9%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHhcC-----CeEEEeCCCCc-HHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711           8 TEEEKLKIISTLRQETK-----KTIIAGTYCES-TRATIDLTQKAAKAGANAALILCPY   60 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~-----~pvi~gv~~~~-~~~~i~~a~~a~~~Gad~v~~~~P~   60 (198)
                      ..+.-.++++.+++..+     +||++=++... .++..+.++.++++|+|++.+....
T Consensus       181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~  239 (327)
T cd04738         181 GKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT  239 (327)
T ss_pred             CHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence            44566678888887763     99999887432 3478899999999999999988654

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.84  E-value=6.2  Score=32.30  Aligned_cols=140  Identities=15%  Similarity=0.148  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcH-H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCEST-R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~-~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +|.++-.++++.+.+.. ++|+++=...+.. + -.=+..+.++++|+|++++.     ...  .++..+|.+.. +..+
T Consensus        71 ~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-----DLp--~ee~~~~~~~~-~~~g  142 (258)
T PRK13111         71 VTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-----DLP--PEEAEELRAAA-KKHG  142 (258)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-----CCC--HHHHHHHHHHH-HHcC
Confidence            35566677777777444 7886544443322 1 22346788889999999993     222  66776666555 5678


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEE---------EeeC---CHHHHHHHHhhcCCCCeEEEecChh----hH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRG---------VKDT---DNIKLANMANQTKDLNFSVFAGSAG----YL  146 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~g---------iK~s---d~~~~~~~~~~~~~~~~~v~~G~d~----~~  146 (198)
                      +..+..=.|.     .+.+.+.++++ -+.++.         .+..   +...+.+.+++..  +..++.|.+-    ..
T Consensus       143 l~~I~lvap~-----t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v  215 (258)
T PRK13111        143 LDLIFLVAPT-----TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQA  215 (258)
T ss_pred             CcEEEEeCCC-----CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHH
Confidence            8888766664     35677777774 344443         3222   2333333333333  4455555432    33


Q ss_pred             HHHhhcCCCeEEeccc
Q psy9711         147 LSGLLVGCAGGINALS  162 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~  162 (198)
                      ...+ .++||++.|++
T Consensus       216 ~~~~-~~ADGviVGSa  230 (258)
T PRK13111        216 AAIA-AVADGVIVGSA  230 (258)
T ss_pred             HHHH-HhCCEEEEcHH
Confidence            3333 45999999985

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=91.84  E-value=3.6  Score=35.47  Aligned_cols=115  Identities=11%  Similarity=0.067  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeCCC--------CcHHHHHHHHHHHHhcC-CCEEEEcCCCCcCCC-CC-H-H
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGTYC--------ESTRATIDLTQKAAKAG-ANAALILCPYYFQKK-MT-E-D   69 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv~~--------~~~~~~i~~a~~a~~~G-ad~v~~~~P~y~~~~-~~-~-~   69 (198)
                      |.|.|.++...+++++      ..||.+=++.        .+.++++++++..++.| +|.+-++.+.+.... .. . .
T Consensus       194 SlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~  273 (363)
T COG1902         194 SLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGP  273 (363)
T ss_pred             cHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCcccccc
Confidence            4567777666666555      4566654443        34679999999999999 799999998876322 11 1 1


Q ss_pred             HHH-HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          70 LIY-EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        70 ~i~-~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      +.. .+-+.+...+.+|++.      +|.--+++...++.+.  -.+||+=-.   |+....++.
T Consensus       274 ~~~~~~a~~i~~~~~~pvi~------~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~  332 (363)
T COG1902         274 GYQVEFAARIKKAVRIPVIA------VGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAA  332 (363)
T ss_pred             chhHHHHHHHHHhcCCCEEE------eCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHH
Confidence            222 2233455667899997      5556688999988865  456666555   777776665

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=91.83  E-value=3.4  Score=35.09  Aligned_cols=117  Identities=11%  Similarity=0.018  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+.+.+  +.++.+=. ++.+.+++++.++..++.|++.  +--|..       .+-.+-++.|.+++++||
T Consensus       173 ~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~--iEqP~~-------~~~~~~~~~l~~~~~ipi  243 (357)
T cd03316         173 REDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFW--FEEPVP-------PDDLEGLARLRQATSVPI  243 (357)
T ss_pred             HHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCe--EcCCCC-------ccCHHHHHHHHHhCCCCE
Confidence            33455666666665  56776644 4456788888888887776543  334432       112344566777778887


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      ...+++.+.++.+  .-.++-+|-+   .+.+..++.+....-++.+..|
T Consensus       244 ~~dE------~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~  297 (357)
T cd03316         244 AAGE------NLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPH  297 (357)
T ss_pred             Eecc------ccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEecc
Confidence            7622      2346777777774  4577777776   3444444432112234555544

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=91.78  E-value=3.1  Score=34.25  Aligned_cols=89  Identities=9%  Similarity=-0.075  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..+.++.+.+..  .+.+  .+..++.+...+.++.|++.|....... ...-...  +++.+.+..+.+.+. +.-.  
T Consensus        93 ~~~di~~~~~~g~~~iri--~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~~-Ga~~--  165 (275)
T cd07937          93 VELFVEKAAKNGIDIFRI--FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVH--TLEYYVKLAKELEDM-GADS--  165 (275)
T ss_pred             HHHHHHHHHHcCCCEEEE--eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCC--CHHHHHHHHHHHHHc-CCCE--
Confidence            444566665553  2333  3344457788888888888885432211 1111122  377777777777653 3222  


Q ss_pred             EeCCCCcccccCHHHHHHHH
Q psy9711          89 YNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~  108 (198)
                      ...+...|. ++|+.+.++.
T Consensus       166 i~l~DT~G~-~~P~~v~~lv  184 (275)
T cd07937         166 ICIKDMAGL-LTPYAAYELV  184 (275)
T ss_pred             EEEcCCCCC-CCHHHHHHHH
Confidence            233444554 4455444443

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=91.73  E-value=2.7  Score=38.04  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEEEeCC------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTIIAGTY------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      ...|.+|-.+.++.+++.+   +..|..+.-      ..+.+..++.++.+.++|++.+.+. -.....+  |.++.+.+
T Consensus       117 l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~-DTvG~~~--P~~v~~li  193 (524)
T PRK12344        117 LRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC-DTNGGTL--PHEVAEIV  193 (524)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc-cCCCCcC--HHHHHHHH
Confidence            3467788888888887777   566655433      2346778999999999999987754 3334344  99999999


Q ss_pred             HHHHccCCCCEEEEe
Q psy9711          76 ISVADNSPIPVIIYN   90 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn   90 (198)
                      +.+.+..++||-+|-
T Consensus       194 ~~l~~~~~v~i~~H~  208 (524)
T PRK12344        194 AEVRAAPGVPLGIHA  208 (524)
T ss_pred             HHHHHhcCCeEEEEE
Confidence            999998888888763

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=91.67  E-value=3.8  Score=34.07  Aligned_cols=155  Identities=13%  Similarity=0.072  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEE----cCCC---Cc-C---CCCCHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALI----LCPY---YF-Q---KKMTEDLIY   72 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~----~~P~---y~-~---~~~~~~~i~   72 (198)
                      .+|.+|..+.++.+...+.+||++-.  | .+..+..+.++...++|+.++.+    .|..   +. +   .-.+.++..
T Consensus        60 ~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~  138 (285)
T TIGR02320        60 EASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFC  138 (285)
T ss_pred             cCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHH
Confidence            68999999999988877799999853  4 58888899999999999999999    2221   10 0   112488888


Q ss_pred             HHHHHHHcc-CC--CCEEEEeCCCCcccccCHHHHHHHH---cC-CCEEEEee-C-CHHHHHHHHhhcCC---C-CeEEE
Q psy9711          73 EHFISVADN-SP--IPVIIYNNTFVTNIDISVDTLVKLA---HH-ENIRGVKD-T-DNIKLANMANQTKD---L-NFSVF  139 (198)
Q Consensus        73 ~y~~~i~~~-~~--~pi~lYn~P~~tg~~l~~~~l~~L~---~~-p~i~giK~-s-d~~~~~~~~~~~~~---~-~~~v~  139 (198)
                      +-.+...++ .+  ++|+-=-.-...+..+ .+.+.|..   +- -..+-+=. . +...+.++.++...   + .+.+.
T Consensus       139 ~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~-~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~  217 (285)
T TIGR02320       139 GKIRAGKDAQTTEDFMIIARVESLILGKGM-EDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIV  217 (285)
T ss_pred             HHHHHHHHhccCCCeEEEEecccccccCCH-HHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence            888888776 34  4444321111111122 35566554   22 24444432 2 55555555432111   1 33222


Q ss_pred             ecC-hh-hHHHHhhcCCCeEEeccc
Q psy9711         140 AGS-AG-YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       140 ~G~-d~-~~~~~l~~G~~G~is~~~  162 (198)
                      .+. .. .+-..-.+|.+=++.+..
T Consensus       218 ~~~~~~~~~~eL~~lG~~~v~~~~~  242 (285)
T TIGR02320       218 PTSYYTTPTDEFRDAGISVVIYANH  242 (285)
T ss_pred             cCCCCCCCHHHHHHcCCCEEEEhHH
Confidence            321 11 233445789887665544

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=91.63  E-value=5.7  Score=34.14  Aligned_cols=111  Identities=11%  Similarity=0.027  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHhc-----CCeEEEeCC----------CCcHHH-HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711           8 TEEEKLKIISTLRQET-----KKTIIAGTY----------CESTRA-TIDLTQKAAKAGANAALILCPYYFQKKMTEDLI   71 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-----~~pvi~gv~----------~~~~~~-~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i   71 (198)
                      |.|-|.+++..+++++     .-.|.+=++          +.+.+| +++.++..++.|+|.+-+..|.+...   ..-.
T Consensus       204 slENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~---~~~~  280 (362)
T PRK10605        204 SVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG---EPYS  280 (362)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC---cccc
Confidence            5677887776666665     112332221          246677 79999999999999999987644311   1111


Q ss_pred             HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      ..+-+.|-+.+++||+.      +|. ++++...++.+-  -.+|++=-.   |+....++.
T Consensus       281 ~~~~~~ik~~~~~pv~~------~G~-~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~  335 (362)
T PRK10605        281 DAFREKVRARFHGVIIG------AGA-YTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQ  335 (362)
T ss_pred             HHHHHHHHHHCCCCEEE------eCC-CCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHh
Confidence            23446666677889886      343 478988888854  456666554   777766665

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=91.44  E-value=2.3  Score=35.29  Aligned_cols=98  Identities=4%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCC--------------CcHHHHHHHHHHHHhcCCCEEEEcCCC---
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYC--------------ESTRATIDLTQKAAKAGANAALILCPY---   60 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~--------------~~~~~~i~~a~~a~~~Gad~v~~~~P~---   60 (198)
                      +..|+.+|-.+..+.+++.+   ++.|=   -.+++              ++.+++.   +++++.|+|++.+.--.   
T Consensus       105 gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~---~Fv~~TgvD~LAvaiGt~HG  181 (284)
T PRK09195        105 GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAR---EFVEATGIDSLAVAIGTAHG  181 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHH---HHHHHHCcCEEeeccCcccc
Confidence            46799999999999999998   55552   22321              1233333   44457799988887422   


Q ss_pred             CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          61 YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        61 y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      .++..  +.==++-.++|.+.+++|++++=     |..++.+.+++..+..
T Consensus       182 ~y~~~--p~Ld~~~L~~I~~~~~vPLVLHG-----gSG~~~e~~~~ai~~G  225 (284)
T PRK09195        182 MYKGE--PKLDFDRLENIRQWVNIPLVLHG-----ASGLPTKDIQQTIKLG  225 (284)
T ss_pred             ccCCC--CcCCHHHHHHHHHHhCCCeEEec-----CCCCCHHHHHHHHHcC
Confidence            12111  22123456777778899999964     4457788888887543

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=91.44  E-value=3.2  Score=33.35  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=40.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      |+...-+++.-.++++.+.+ +++||.+=+....+.+++++++.++++|+|++-+.
T Consensus       118 G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~  172 (233)
T cd02911         118 GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVD  172 (233)
T ss_pred             chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEEC
Confidence            44555567777788888876 48888885443222788999999999999986553

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=91.42  E-value=8.7  Score=33.17  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=25.6

Q ss_pred             CCeEEEeCCCCc-HHHHHHHHHHHHhcCCCEEEEc
Q psy9711          24 KKTIIAGTYCES-TRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        24 ~~pvi~gv~~~~-~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      +.|.+.+..-.. -+-+.++.++|+++|+.++++.
T Consensus       132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlT  166 (367)
T TIGR02708       132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLT  166 (367)
T ss_pred             CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            446677765533 3445889999999999999996

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria

Probab=91.42  E-value=0.65  Score=39.03  Aligned_cols=168  Identities=18%  Similarity=0.122  Sum_probs=91.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ......+||......+++.+      ++-..+.+.+.+.++.+++++.+++.|++++|+.+-.+ ..+     .....++
T Consensus        56 q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~em~~ra~~a~~~G~~~vmv~~~~~-G~~-----~~~~l~~  129 (309)
T PF00016_consen   56 QPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDEMIERAEYAKEAGANAVMVNVLTA-GFS-----ALQSLAE  129 (309)
T ss_dssp             BTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHHHHHHHHHHHHHTGSEEEEEHHHH-CHH-----HHHHHHH
T ss_pred             cccccHhHhHHhhhhhhhccccccceecceecccccccHHHHHHhhhhhhhhccchhhcccccc-ccc-----ccchhhh
Confidence            44566789988777777766      33346678777799999999999999999999963322 111     2233444


Q ss_pred             HHccCCCCEEEEeCCCCcc-------cccCHHHHHHHHc---CCCEE----EEeeC-CHH---HHHHHHhh---------
Q psy9711          78 VADNSPIPVIIYNNTFVTN-------IDISVDTLVKLAH---HENIR----GVKDT-DNI---KLANMANQ---------  130 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L~~---~p~i~----giK~s-d~~---~~~~~~~~---------  130 (198)
                      .++...+||..+-.  .+|       .-++..++.+|.+   .+.|.    +=|.+ +..   .+.+....         
T Consensus       130 ~~~~~~~~ih~H~A--~~ga~~r~~~~Gis~~vl~kl~RLaGaD~vh~~t~~Gk~~g~~~~~~~~~~~~~~~~~~~d~~~  207 (309)
T PF00016_consen  130 DARDNGLPIHAHRA--GHGAFTRSPDHGISFRVLGKLMRLAGADHVHFGTPYGKFEGDRSEVQGFADECRESMLEADAAR  207 (309)
T ss_dssp             HHHHHTSEEEEETT--THHHHHSSSSSEEHHHHHHHHHHHHT-SEEEEE-SSSSBTTHHHHHHHHHHHHHHSEEHHBGGG
T ss_pred             hhcccceeeeeccc--cchhhcccccCccceeeeccceecceeeeeccCccccccccccccccchhhhcccchhcccccc
Confidence            44444555544322  111       2234444554443   22221    23444 333   12111100         


Q ss_pred             ---------cCCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcC
Q psy9711         131 ---------TKDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAG  179 (198)
Q Consensus       131 ---------~~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~g  179 (198)
                               ...+-|.|.+|.-.  .+.+.+ ..|.|=++...+.++  |       +.+++-|+++.+|
T Consensus       208 g~~~~q~~~~~k~~~Pv~SgG~~~g~vp~~~~~~G~Dvil~aGGGi~gHP~G~~AGa~A~RqA~eA~~~g  277 (309)
T PF00016_consen  208 GPFFDQDWGGMKPVFPVPSGGMHPGQVPELYRDLGTDVILQAGGGIHGHPDGPAAGARAFRQAWEAAMAG  277 (309)
T ss_dssp             TBHSHEEBTTS---EEEEESSBSGGGHHHHHHHHTSSSEEEESHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeecccccccccccccccCccchhhhHHHHHhhccCcccccCCcccccccCCCCCccchHHHHHHHhhc
Confidence                     02356888887553  233332 468776655555443  2       6678889999888

It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=91.37  E-value=2.5  Score=35.12  Aligned_cols=101  Identities=9%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES-----------TRATIDLTQKAAKAGANAALILCPY---YFQ   63 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~   63 (198)
                      +..|+.+|-.+..+.+++.+   ++.|   +-.+++..           ..+.-+-.+++++.|+|++.+.--.   .++
T Consensus       105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~  184 (284)
T PRK12737        105 GSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYK  184 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccC
Confidence            46789999999999999998   5555   22232111           0111233344556899988887422   122


Q ss_pred             CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..  +.==++-.++|.+.+++|++++=     |..++.+.+++..+..
T Consensus       185 ~~--p~Ld~~~L~~I~~~~~iPLVlHG-----gSG~~~e~~~kai~~G  225 (284)
T PRK12737        185 GE--PKLDFERLAEIREKVSIPLVLHG-----ASGVPDEDVKKAISLG  225 (284)
T ss_pred             CC--CcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHCC
Confidence            11  22123457888888899999964     4457888988887654

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=91.37  E-value=1.9  Score=36.46  Aligned_cols=48  Identities=15%  Similarity=0.274  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY   61 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y   61 (198)
                      .++++.+++..++||++=.+. +..+..+.++.++++|+|++.+..-.+
T Consensus       152 ~eiv~~v~~~~~iPv~vKl~p-~~~~~~~~a~~l~~~Gadgi~~~nt~~  199 (325)
T cd04739         152 LDILRAVKSAVTIPVAVKLSP-FFSALAHMAKQLDAAGADGLVLFNRFY  199 (325)
T ss_pred             HHHHHHHHhccCCCEEEEcCC-CccCHHHHHHHHHHcCCCeEEEEcCcC
Confidence            467777766668999998764 455889999999999999999987653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=91.32  E-value=6.9  Score=31.81  Aligned_cols=145  Identities=10%  Similarity=0.055  Sum_probs=93.5

Q ss_pred             CCeEEEeC-CCCcHHHHHHHHHHHHhcCC-CEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711          24 KKTIIAGT-YCESTRATIDLTQKAAKAGA-NAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID   98 (198)
Q Consensus        24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Ga-d~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~   98 (198)
                      ++.++..+ |..+-+|+++.++.|.+++- +-+   ++..|.|..|.  ..+.++--+.+.+ =+.-++-|=.+      
T Consensus        62 ~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd--~~~tv~aa~~L~~-~Gf~vlpyc~d------  132 (248)
T cd04728          62 GYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPD--PIETLKAAEILVK-EGFTVLPYCTD------  132 (248)
T ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccC--HHHHHHHHHHHHH-CCCEEEEEeCC------
Confidence            55555544 66678999999999999853 433   23358888887  9999999888874 35666655544      


Q ss_pred             cCHHHHHHHHcC------C--CEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC----hhhHHHHhhcCCCeEEeccccc
Q psy9711          99 ISVDTLVKLAHH------E--NIRGVKDT--DNIKLANMANQTKDLNFSVFAGS----AGYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus        99 l~~~~l~~L~~~------p--~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~G~~G~is~~~n~  164 (198)
                       ++.+-++|.+.      |  ..+|-..+  ++..+..+. +.  .++.|+.+.    .+....++.+|++|++.+++-.
T Consensus       133 -d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~-e~--~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt  208 (248)
T cd04728         133 -DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIII-ER--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA  208 (248)
T ss_pred             -CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH-Hh--CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence             35566666643      3  44443333  666666555 32  345555432    3466788999999999988865


Q ss_pred             c---hHHH-HHHHHHHHcCCH
Q psy9711         165 L---GGPI-CELYDLAKAGKW  181 (198)
Q Consensus       165 ~---P~~~-~~l~~~~~~gd~  181 (198)
                      -   |..+ .++..++.+|+.
T Consensus       209 ~a~dP~~ma~af~~Av~aGr~  229 (248)
T cd04728         209 KAKDPVAMARAFKLAVEAGRL  229 (248)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            5   6554 444455566643

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated

Probab=91.27  E-value=8.4  Score=32.98  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=63.9

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCCH------------------HHHHHHHHHH--
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMTE------------------DLIYEHFISV--   78 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~~------------------~~i~~y~~~i--   78 (198)
                      |..||+| ++-.+.+.+++.|+..+++|..    .+.++--|++||- |.                  ++=+.+.+.+  
T Consensus        53 rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPR-Ts~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~  131 (349)
T PRK09261         53 RLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPR-TTVGWKGLINDPDLDGSFDINDGLRIARKLLL  131 (349)
T ss_pred             CeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCC-CCCCCcCCCcCcCccccccHHHHHHHHHHHHH
Confidence            7788998 7778899999999999999873    4556666677753 22                  4556677777  


Q ss_pred             -HccCCCCEEEE-----------------eCCCCcccccCHHHHHHHH-cCCCEEEEeeC
Q psy9711          79 -ADNSPIPVIIY-----------------NNTFVTNIDISVDTLVKLA-HHENIRGVKDT  119 (198)
Q Consensus        79 -~~~~~~pi~lY-----------------n~P~~tg~~l~~~~l~~L~-~~p~i~giK~s  119 (198)
                       .+..++|+.-=                 .++.+   +..-....+++ ..+--||+|.+
T Consensus       132 ~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGAR---t~esq~hr~~asg~~~PVg~Kng  188 (349)
T PRK09261        132 DINELGLPAATEFLDPITPQYIADLISWGAIGAR---TTESQVHRELASGLSCPVGFKNG  188 (349)
T ss_pred             HHHHhCCCeEEEecccccHHHHHhhcceeeeccc---hhcCHHHHHHhcCCCCeeEecCC
Confidence             46778998621                 12222   22334556666 68899999999

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=91.18  E-value=6.7  Score=35.25  Aligned_cols=128  Identities=12%  Similarity=0.123  Sum_probs=78.3

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHH
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV  105 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~  105 (198)
                      +++|+.-....+.++.++...++|+|.+.+-+..-.     .....+..+.|.+.. ++||+.       |...+++...
T Consensus       230 L~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~-----s~~~~~~i~~ik~~~~~~~v~a-------G~V~t~~~a~  297 (495)
T PTZ00314        230 LLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGN-----SIYQIDMIKKLKSNYPHVDIIA-------GNVVTADQAK  297 (495)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC-----chHHHHHHHHHHhhCCCceEEE-------CCcCCHHHHH
Confidence            344443333456699999999999999988765311     333456677777665 577776       6678899988


Q ss_pred             HHHcCCCEEEEeeC---------------CHHHH---HHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccc
Q psy9711         106 KLAHHENIRGVKDT---------------DNIKL---ANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSA  163 (198)
Q Consensus       106 ~L~~~p~i~giK~s---------------d~~~~---~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n  163 (198)
                      .+.+. .+-+||-+               ...++   .+..+.....++.++.  |.  ...+..++.+|+++++.|..-
T Consensus       298 ~~~~a-Gad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~  376 (495)
T PTZ00314        298 NLIDA-GADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLL  376 (495)
T ss_pred             HHHHc-CCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchh
Confidence            88863 22234321               01222   2222111123466776  43  346788999999999988874


Q ss_pred             cchH
Q psy9711         164 VLGG  167 (198)
Q Consensus       164 ~~P~  167 (198)
                      .-++
T Consensus       377 a~~~  380 (495)
T PTZ00314        377 AGTE  380 (495)
T ss_pred             cccc
Confidence            4443

>PRK00208 thiG thiazole synthase; Reviewed

Probab=91.18  E-value=1.5  Score=35.57  Aligned_cols=60  Identities=12%  Similarity=0.135  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +++.+++..++|||++.|=.+.++    +..+.++|+|+|++..-..-..+  +..+-+.|+.-.+
T Consensus       166 ~i~~i~e~~~vpVIveaGI~tped----a~~AmelGAdgVlV~SAItka~d--P~~ma~af~~Av~  225 (250)
T PRK00208        166 NLRIIIEQADVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAIAVAGD--PVAMARAFKLAVE  225 (250)
T ss_pred             HHHHHHHhcCCeEEEeCCCCCHHH----HHHHHHcCCCEEEEChHhhCCCC--HHHHHHHHHHHHH
Confidence            366666655899999876655554    45667799999999988765455  9999999987665

>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]

Probab=91.17  E-value=5.1  Score=36.26  Aligned_cols=99  Identities=16%  Similarity=0.190  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhc-CC-eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEE
Q psy9711          13 LKIISTLRQET-KK-TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~-~~-pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lY   89 (198)
                      +++++.++... .+ -|+++.|=.+.+++.+++....+-|...+..      ||. +-++| +-.-.|+++.+ .||+++
T Consensus       111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~f------KPG-tIeqI-~svi~IAka~P~~pIilq  182 (717)
T COG4981         111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAF------KPG-TIEQI-RSVIRIAKANPTFPIILQ  182 (717)
T ss_pred             HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEe------cCC-cHHHH-HHHHHHHhcCCCCceEEE
Confidence            45666666554 21 1455677788999999999888888766554      565 34444 45556777774 999999


Q ss_pred             eCCCCcccccC--------HHHHHHHHcCCCEEEEeeC
Q psy9711          90 NNTFVTNIDIS--------VDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        90 n~P~~tg~~l~--------~~~l~~L~~~p~i~giK~s  119 (198)
                      ..-++.|-.=|        ..++.+|..++||+=+--+
T Consensus       183 ~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGg  220 (717)
T COG4981         183 WEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGG  220 (717)
T ss_pred             EecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecC
Confidence            98877666433        3456677789999877766

>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor

Probab=91.09  E-value=2.7  Score=36.65  Aligned_cols=75  Identities=9%  Similarity=0.008  Sum_probs=65.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ||.+.=+.+|-+++++.+.+.. ++.-|.+||+ ..+|.|.-.+.+.++|+|..++-.-.|...   .+-+.+|-++|+-
T Consensus       198 ~e~HaApldE~~~Va~~Akk~gkGveaI~~vGD-GyddLI~G~~a~id~~vDvfVvEGgPFN~a---~dRl~aFakaVa~  273 (505)
T PF10113_consen  198 GEEHAAPLDEMEEVAELAKKYGKGVEAIMHVGD-GYDDLITGLKACIDMGVDVFVVEGGPFNRA---KDRLKAFAKAVAA  273 (505)
T ss_pred             CcccCCCHHHHHHHHHHHHHhCCCceEEEEecC-ChHHHHHHHHHHHhcCCcEEEEeCCCcccc---hhHHHHHHHHHHH
Confidence            6788889999999999999998 8999999997 799999999999999999999986666653   6778888888774

Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=91.06  E-value=5.1  Score=30.51  Aligned_cols=82  Identities=13%  Similarity=0.074  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCC---CCcCCC--CCHHHHHHHHHHHHccC---CCCEEEEeCCCCccc-ccCHHHHHH
Q psy9711          36 TRATIDLTQKAAKAGANAALILCP---YYFQKK--MTEDLIYEHFISVADNS---PIPVIIYNNTFVTNI-DISVDTLVK  106 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P---~y~~~~--~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~tg~-~l~~~~l~~  106 (198)
                      .+...+.++.|+.+|+..+.+.++   .....+  ...+.+.+.++.+++..   ++-+.+.|.|..... ..+.+.+.+
T Consensus        70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~  149 (213)
T PF01261_consen   70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYR  149 (213)
T ss_dssp             HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHH
Confidence            566777888899999999999877   333322  01345666667776655   899999999876542 334577777


Q ss_pred             HH-c--CCCEEEEee
Q psy9711         107 LA-H--HENIRGVKD  118 (198)
Q Consensus       107 L~-~--~p~i~giK~  118 (198)
                      +. +  .|| +|+-.
T Consensus       150 ~l~~~~~~~-~~i~~  163 (213)
T PF01261_consen  150 LLEEVDSPN-VGICF  163 (213)
T ss_dssp             HHHHHTTTT-EEEEE
T ss_pred             HHhhcCCCc-ceEEE
Confidence            77 3  467 44433

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein

Probab=91.05  E-value=3.8  Score=33.73  Aligned_cols=80  Identities=10%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +++.+=+..+.+.+.+++   +..++..-+..+.....+..+.....++|++++.++.       .......++.+. ..
T Consensus         7 ~~~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~-------~~~~~~~l~~~~-~~   78 (302)
T TIGR02634         7 DLRLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN-------GQVLSNAVQEAK-DE   78 (302)
T ss_pred             ccchhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhHHHHHHHHHH-HC
Confidence            455566666777666666   6777776666677778889999999999999998643       222334555543 46


Q ss_pred             CCCEEEEeCCC
Q psy9711          83 PIPVIIYNNTF   93 (198)
Q Consensus        83 ~~pi~lYn~P~   93 (198)
                      ++|+++.|.+.
T Consensus        79 ~iPvV~~d~~~   89 (302)
T TIGR02634        79 GIKVVAYDRLI   89 (302)
T ss_pred             CCeEEEecCcC
Confidence            89999998753

Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.

>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional

Probab=91.03  E-value=5.4  Score=34.11  Aligned_cols=92  Identities=10%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCCH------------------HHHHHHHHHH--
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMTE------------------DLIYEHFISV--   78 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~~------------------~~i~~y~~~i--   78 (198)
                      |..||+| ++-.+.+.+++.|+..+++|..    .+.++--|++||- |.                  ++=+.+-|.+  
T Consensus        54 rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPR-T~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~  132 (353)
T PRK12755         54 RLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPR-TTVGWKGLINDPHLDGSFDIEEGLRIARKLLL  132 (353)
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCC-CCcCCcCCCCCccccccccHHHHHHHHHHHHH
Confidence            7788888 7777899999999999999864    4556666666663 21                  3334454444  


Q ss_pred             -HccCCCCEEEE-----------------eCCCCcccccCHHHHHHHH-cCCCEEEEeeC
Q psy9711          79 -ADNSPIPVIIY-----------------NNTFVTNIDISVDTLVKLA-HHENIRGVKDT  119 (198)
Q Consensus        79 -~~~~~~pi~lY-----------------n~P~~tg~~l~~~~l~~L~-~~p~i~giK~s  119 (198)
                       ....++|+.-=                 -++.+   +..-....+++ ...--||+|.+
T Consensus       133 ~~~e~Glp~atE~ld~~~~~y~~Dlvs~~aIGAR---t~esq~hre~aSgl~~PVgfKng  189 (353)
T PRK12755        133 DLVELGLPLATEALDPISPQYLGDLISWGAIGAR---TTESQTHREMASGLSMPVGFKNG  189 (353)
T ss_pred             HHHHhCCCEEEEecCcccHHHHHhhhhheeeccc---hhcCHHHHHHhcCCCCeeEecCC
Confidence             55678998621                 12222   22335566676 68899999999

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=90.96  E-value=0.74  Score=37.01  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711          13 LKIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      ...+++.++++++|||+  |+|..|      .+-.+.++|+|+|++-...--.-+  +-.+-+-|+.-.++
T Consensus       171 ~~~l~iiie~a~VPviVDAGiG~pS------dAa~aMElG~DaVL~NTAiA~A~D--Pv~MA~Af~~Av~A  233 (262)
T COG2022         171 PYNLEIIIEEADVPVIVDAGIGTPS------DAAQAMELGADAVLLNTAIARAKD--PVAMARAFALAVEA  233 (262)
T ss_pred             HHHHHHHHHhCCCCEEEeCCCCChh------HHHHHHhcccceeehhhHhhccCC--hHHHHHHHHHHHHH

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=90.96  E-value=0.99  Score=37.97  Aligned_cols=149  Identities=15%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ..|.-.++++.+.+..++||++=++- +..+..+.++.+.+.|+|++.++.-....+.            +-..+..|+.
T Consensus       145 ~~e~l~~l~~~vk~~~~~Pv~vKl~P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~------------id~~~~~~~~  211 (310)
T COG0167         145 DPELLEKLLEAVKAATKVPVFVKLAP-NITDIDEIAKAAEEAGADGLIAINTTKSGMK------------IDLETKKPVL  211 (310)
T ss_pred             CHHHHHHHHHHHHhcccCceEEEeCC-CHHHHHHHHHHHHHcCCcEEEEEeecccccc------------cccccccccc
Confidence            44566667777766669999999987 8999999999999999999999875543331            0001113332


Q ss_pred             EEeCCCCcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEecccc
Q psy9711          88 IYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALSA  163 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~n  163 (198)
                      -.-.-+     +|-.-+..++            ...+.++. +..++++.|.  .|-++  .....+.+|++-+--+++.
T Consensus       212 ~~~~GG-----LSG~~ikp~a------------l~~v~~l~-~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal  273 (310)
T COG0167         212 ANETGG-----LSGPPLKPIA------------LRVVAELY-KRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTAL  273 (310)
T ss_pred             CcCCCC-----cCcccchHHH------------HHHHHHHH-HhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeee
Confidence            222222     3333333332            23333333 2334455554  23333  2456678888777666665


Q ss_pred             cc--hHHHHHHH----HHHHcCCHHHHHHH
Q psy9711         164 VL--GGPICELY----DLAKAGKWEEAMKL  187 (198)
Q Consensus       164 ~~--P~~~~~l~----~~~~~gd~~~A~~l  187 (198)
                      +.  |.++.+|.    +.+++..++...++
T Consensus       274 ~~~Gp~i~~~I~~~l~~~l~~~g~~si~d~  303 (310)
T COG0167         274 IYKGPGIVKEIIKGLARWLEEKGFESIQDI  303 (310)
T ss_pred             eeeCchHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            43  44555444    44455545444433

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=90.88  E-value=1.5  Score=34.93  Aligned_cols=71  Identities=24%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG  115 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g  115 (198)
                      .+.++.++.+++.|+|.+.+..-.-....  +.--.++++++++.+++||+.      .|---+++.+.++.+..++.|
T Consensus       153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~--~g~~~~~~~~i~~~~~ipvia------~GGi~s~~di~~~l~~~gadg  223 (232)
T TIGR03572       153 RDPVEWAREAEQLGAGEILLNSIDRDGTM--KGYDLELIKTVSDAVSIPVIA------LGGAGSLDDLVEVALEAGASA  223 (232)
T ss_pred             CCHHHHHHHHHHcCCCEEEEeCCCccCCc--CCCCHHHHHHHHhhCCCCEEE------ECCCCCHHHHHHHHHHcCCCE
Confidence            45689999999999999999862211100  111267788898888999887      333347888888433234333

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=90.78  E-value=3.6  Score=38.91  Aligned_cols=98  Identities=9%  Similarity=0.069  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHH-H
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDL-I   71 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~-i   71 (198)
                      |.+.|.+++..+++.+      +.||.+=++       +.+.++++++++.+++.|+|.+-+..+.+.....  .... .
T Consensus       596 slenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~  675 (765)
T PRK08255        596 SLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQ  675 (765)
T ss_pred             CHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCcccc
Confidence            4567776666666555      456765444       3457899999999999999999998554332100  0001 1


Q ss_pred             HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..+-+.|-+.+++||+.      .|.--+++...++.+..
T Consensus       676 ~~~~~~ik~~~~~pv~~------~G~i~~~~~a~~~l~~g  709 (765)
T PRK08255        676 TPFADRIRNEAGIATIA------VGAISEADHVNSIIAAG  709 (765)
T ss_pred             HHHHHHHHHHcCCEEEE------eCCCCCHHHHHHHHHcC
Confidence            23335555566888766      34445788888887543

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=90.77  E-value=1.3  Score=35.08  Aligned_cols=49  Identities=16%  Similarity=0.323  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      ++..++++.+.+.|+|++++..-.  .  .+++.+.+..+.+-+.+++|++++
T Consensus        11 e~~~~ia~~v~~~gtDaI~VGGS~--g--vt~~~~~~~v~~ik~~~~lPvilf   59 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVGGSL--G--IVESNLDQTVKKIKKITNLPVILF   59 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCcC--C--CCHHHHHHHHHHHHhhcCCCEEEE
Confidence            556667889999999999997441  1  248999999999988899999996

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=90.66  E-value=6.2  Score=31.99  Aligned_cols=146  Identities=12%  Similarity=0.089  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH--HHHHccCCC---C-
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF--ISVADNSPI---P-   85 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~--~~i~~~~~~---p-   85 (198)
                      ..++++.+.+.+++||++|-|-.+.+++.++.    ++|++.+++....+..|. --+++.+.|  +.|.-+.+.   + 
T Consensus        62 n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~----~~Ga~~vivgt~~~~~p~-~~~~~~~~~~~~~iv~slD~~~g~~  136 (254)
T TIGR00735        62 MIDVVERTAETVFIPLTVGGGIKSIEDVDKLL----RAGADKVSINTAAVKNPE-LIYELADRFGSQCIVVAIDAKRVYV  136 (254)
T ss_pred             hHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH----HcCCCEEEEChhHhhChH-HHHHHHHHcCCCCEEEEEEeccCCC
Confidence            34566666666689999988877777766554    469999999877765432 123344444  122222221   1 


Q ss_pred             -------EEEEeCCCCcccccCHHHH-HHHHcC--CCEEE-------EeeC-CHHHHHHHHhhcCCCCeEEEec-Ch--h
Q psy9711          86 -------VIIYNNTFVTNIDISVDTL-VKLAHH--ENIRG-------VKDT-DNIKLANMANQTKDLNFSVFAG-SA--G  144 (198)
Q Consensus        86 -------i~lYn~P~~tg~~l~~~~l-~~L~~~--p~i~g-------iK~s-d~~~~~~~~~~~~~~~~~v~~G-~d--~  144 (198)
                             |.++...  .....++..+ .+|.+.  ..|.-       .... |+..+.++.+ ..+-.+ +.+| ..  +
T Consensus       137 ~~~~~~~v~i~gw~--~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~-~~~ipv-ia~GGi~s~~  212 (254)
T TIGR00735       137 NSYCWYEVYIYGGR--ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSE-AVKIPV-IASGGAGKPE  212 (254)
T ss_pred             CCCccEEEEEeCCc--ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHH-hCCCCE-EEeCCCCCHH
Confidence                   1112111  2223444333 444433  22221       1112 5566666553 332233 2333 22  2


Q ss_pred             hHHHHhhcC-CCeEEecccccch
Q psy9711         145 YLLSGLLVG-CAGGINALSAVLG  166 (198)
Q Consensus       145 ~~~~~l~~G-~~G~is~~~n~~P  166 (198)
                      .+...+..| ++|++.+.+-...
T Consensus       213 di~~~~~~g~~dgv~~g~a~~~~  235 (254)
T TIGR00735       213 HFYEAFTKGKADAALAASVFHYR  235 (254)
T ss_pred             HHHHHHHcCCcceeeEhHHHhCC
Confidence            455667777 9999988774443

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=90.66  E-value=8.2  Score=31.57  Aligned_cols=127  Identities=14%  Similarity=0.134  Sum_probs=84.3

Q ss_pred             CCeEEEeC-CCCcHHHHHHHHHHHHhcC-------CCEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          24 KKTIIAGT-YCESTRATIDLTQKAAKAG-------ANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~G-------ad~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      ++.++-.+ |..+-+|+++.++.|.+++       -+-+   ++..|.|..|.  +.+.++--+.+.+ -+--|+-|-+|
T Consensus        70 ~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD--~~etl~Aae~Lv~-eGF~VlPY~~~  146 (267)
T CHL00162         70 KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPD--PIGTLKAAEFLVK-KGFTVLPYINA  146 (267)
T ss_pred             ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCC--hHHHHHHHHHHHH-CCCEEeecCCC
Confidence            55555543 5667899999999999986       3333   33468888887  9999999999885 36777777765


Q ss_pred             CCcccccCHHHHHHHHcCCC-E-------EEEeeC--CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEE
Q psy9711          93 FVTNIDISVDTLVKLAHHEN-I-------RGVKDT--DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGI  158 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~~p~-i-------~giK~s--d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~i  158 (198)
                      .       +-+-+||.+..- .       +|---.  |+..++.++ .  .+++.|+.  |.  .+....++.+|+||+.
T Consensus       147 D-------~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~-e--~~~vpVivdAGIgt~sDa~~AmElGaDgVL  216 (267)
T CHL00162        147 D-------PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII-E--NAKIPVIIDAGIGTPSEASQAMELGASGVL  216 (267)
T ss_pred             C-------HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH-H--cCCCcEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence            3       566777776432 2       222222  556666555 2  24455554  33  2467788999999998


Q ss_pred             ecccc
Q psy9711         159 NALSA  163 (198)
Q Consensus       159 s~~~n  163 (198)
                      ..++-
T Consensus       217 ~nSaI  221 (267)
T CHL00162        217 LNTAV  221 (267)
T ss_pred             eccee
Confidence            77663

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=90.64  E-value=10  Score=32.71  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCC----CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ...+.++++.+.++|+|.+.+..-.    |...+.++..+.++.    +..++||+.       |.-.+.+...++.+. 
T Consensus       141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i----~~~~IPVI~-------G~V~t~e~A~~~~~a-  208 (369)
T TIGR01304       141 PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFI----GELDVPVIA-------GGVNDYTTALHLMRT-  208 (369)
T ss_pred             CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHH----HHCCCCEEE-------eCCCCHHHHHHHHHc-
Confidence            4588899999999999999986432    322221255444443    446899986       334677878777752 


Q ss_pred             CEEEEeeC-------------CHH---HHHHHHh------hcCC-CCeEEEe-c---ChhhHHHHhhcCCCeEEeccccc
Q psy9711         112 NIRGVKDT-------------DNI---KLANMAN------QTKD-LNFSVFA-G---SAGYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       112 ~i~giK~s-------------d~~---~~~~~~~------~~~~-~~~~v~~-G---~d~~~~~~l~~G~~G~is~~~n~  164 (198)
                      .+.+|.-.             ...   .+.+...      +..+ ..+.|+. |   ....+..++.+|+++++.|..-.
T Consensus       209 GaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a  288 (369)
T TIGR01304       209 GAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLA  288 (369)
T ss_pred             CCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHH
Confidence            33333311             011   1222210      1122 2355553 3   22457888999999999887644


Q ss_pred             c
Q psy9711         165 L  165 (198)
Q Consensus       165 ~  165 (198)
                      .
T Consensus       289 ~  289 (369)
T TIGR01304       289 R  289 (369)
T ss_pred             h
Confidence            3

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=90.56  E-value=5.7  Score=32.46  Aligned_cols=94  Identities=17%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             CCeEEEeCC-----CCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCccc
Q psy9711          24 KKTIIAGTY-----CESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI   97 (198)
Q Consensus        24 ~~pvi~gv~-----~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~   97 (198)
                      ++.|++.|.     ...+++.-+.++.+ +..++|+++++-+....+.  +-+.++   ++-+.+++||++     .+| 
T Consensus       140 ~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~--~~~~l~---~vr~~~~~PVlv-----GSG-  208 (254)
T PF03437_consen  140 DVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPP--DPEKLK---RVREAVPVPVLV-----GSG-  208 (254)
T ss_pred             CeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCC--CHHHHH---HHHhcCCCCEEE-----ecC-
Confidence            566776652     12222333445455 5678999999988876665  443333   344445599987     344 


Q ss_pred             ccCHHHHHHHHc--CCCEEE--EeeC-------CHHHHHHHHh
Q psy9711          98 DISVDTLVKLAH--HENIRG--VKDT-------DNIKLANMAN  129 (198)
Q Consensus        98 ~l~~~~l~~L~~--~p~i~g--iK~s-------d~~~~~~~~~  129 (198)
                       ++++-+.++.+  ..-|||  +|..       |.++.+++++
T Consensus       209 -vt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~  250 (254)
T PF03437_consen  209 -VTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVRRFME  250 (254)
T ss_pred             -CCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHHHHHH
Confidence             67888888875  345665  6754       6777777763

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=90.54  E-value=3.6  Score=32.26  Aligned_cols=146  Identities=19%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      |+.++..++++...++. +  +++|+|+--+   .++++.|.++||+.++.  |.+      .+++.++-++    .++|
T Consensus        41 ~~t~~a~~~I~~l~~~~p~--~~vGAGTV~~---~e~a~~a~~aGA~FivS--P~~------~~~v~~~~~~----~~i~  103 (196)
T PF01081_consen   41 LRTPNALEAIEALRKEFPD--LLVGAGTVLT---AEQAEAAIAAGAQFIVS--PGF------DPEVIEYARE----YGIP  103 (196)
T ss_dssp             TTSTTHHHHHHHHHHHHTT--SEEEEES--S---HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHH----HTSE
T ss_pred             cCCccHHHHHHHHHHHCCC--CeeEEEeccC---HHHHHHHHHcCCCEEEC--CCC------CHHHHHHHHH----cCCc
Confidence            44556677888777765 4  5667776544   45677888899997664  432      6667776553    3555


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----C-HHHHHHHHhhcCCCCeEEEe--cCh-hhHHHHhhcCCCe
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----D-NIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d-~~~~~~~~~~~~~~~~~v~~--G~d-~~~~~~l~~G~~G  156 (198)
                      ++    |   | .++|..+.+-.+. ...-+|.=     . +..+..+. . --+++.++.  |-+ +.+...+.+|+.+
T Consensus       104 ~i----P---G-~~TptEi~~A~~~-G~~~vK~FPA~~~GG~~~ik~l~-~-p~p~~~~~ptGGV~~~N~~~~l~ag~~~  172 (196)
T PF01081_consen  104 YI----P---G-VMTPTEIMQALEA-GADIVKLFPAGALGGPSYIKALR-G-PFPDLPFMPTGGVNPDNLAEYLKAGAVA  172 (196)
T ss_dssp             EE----E---E-ESSHHHHHHHHHT-T-SEEEETTTTTTTHHHHHHHHH-T-TTTT-EEEEBSS--TTTHHHHHTSTTBS
T ss_pred             cc----C---C-cCCHHHHHHHHHC-CCCEEEEecchhcCcHHHHHHHh-c-cCCCCeEEEcCCCCHHHHHHHHhCCCEE
Confidence            54    2   3 3556555544433 34566765     2 34444443 2 235666552  333 3677889999988


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHH
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKL  187 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l  187 (198)
                      +..| ++++|+..      ++++||++..++
T Consensus       173 vg~G-s~L~~~~~------i~~~~~~~I~~l  196 (196)
T PF01081_consen  173 VGGG-SWLFPKDL------IAAGDWDEITRL  196 (196)
T ss_dssp             EEEE-SGGGSHHH------HHTT-HHHHHHH
T ss_pred             EEEC-chhcCHHH------HhcCCHHHHhcC
Confidence            7655 45777542      457888876654

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=90.50  E-value=1.2  Score=36.55  Aligned_cols=64  Identities=11%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             HHHHHHHHhcCCeEEE-eC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIA-GT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      +-.+.+++.+++||++ |= ...+.++.+++.+.+.++|+.++.+---.|.++.  ++.+.+-...|.
T Consensus       192 e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~--p~~m~~Ai~~Iv  257 (265)
T COG1830         192 ESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED--PEAMVKAIQAIV  257 (265)
T ss_pred             HHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC--hHHHHHHHHHHh
Confidence            3455666666888755 44 3448899999999999999999999999999887  888777666664

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=90.39  E-value=3.4  Score=32.99  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC-CHHHHH-----
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET-KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDLIY-----   72 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~-~~~~i~-----   72 (198)
                      |-.+..++.+|-.++.+.+++-. ++++-+-|-+ ...++.++++...+++|+|-+.--.-.-.+|.. .--+++     
T Consensus        94 Y~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaap  173 (242)
T PF04481_consen   94 YAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAP  173 (242)
T ss_pred             HhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhH
Confidence            34567789999999999999888 8888777744 457999999999999999988765433333320 122222     


Q ss_pred             --HHHHHHHccCCCCEEE
Q psy9711          73 --EHFISVADNSPIPVII   88 (198)
Q Consensus        73 --~y~~~i~~~~~~pi~l   88 (198)
                        ..-..|.+++++||+-
T Consensus       174 TLAaay~ISr~v~iPVlc  191 (242)
T PF04481_consen  174 TLAAAYAISRAVSIPVLC  191 (242)
T ss_pred             HHHHHHHHHhccCCceEe
Confidence              2335677778899875

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=90.39  E-value=14  Score=33.95  Aligned_cols=177  Identities=10%  Similarity=0.141  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeE------EEeCCCCcHHHHHH-HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTI------IAGTYCESTRATID-LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pv------i~gv~~~~~~~~i~-~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      .-++-||.+.++..+..+++-.      ++|.... .++.++ ..+.|.+.|+|-+-+..+.    + +-+.+....+.+
T Consensus        59 ~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd~l----n-d~~n~~~~i~~~  132 (596)
T PRK14042         59 KEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFDAL----N-DARNLKVAIDAI  132 (596)
T ss_pred             CCCHHHHHHHHHHhCCCCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcccC----c-chHHHHHHHHHH
Confidence            3477888888877765442222      3455543 345554 7888999999988886543    2 244455566665


Q ss_pred             HccCCC---CEEEEeC-CCCcccccCHHHHHHHH----cC-CCEEEEeeC----CHHHHHHHHhh---cCCCCeEEEecC
Q psy9711          79 ADNSPI---PVIIYNN-TFVTNIDISVDTLVKLA----HH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAGS  142 (198)
Q Consensus        79 ~~~~~~---pi~lYn~-P~~tg~~l~~~~l~~L~----~~-p~i~giK~s----d~~~~~~~~~~---~~~~~~~v~~G~  142 (198)
                      -+ .+.   +.+-|-. |     ..+++.+.+++    +. ...+.|||+    .+..+.++++.   ..+-.+. +-++
T Consensus       133 k~-~G~~~~~~i~yt~sp-----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~-~H~H  205 (596)
T PRK14042        133 KS-HKKHAQGAICYTTSP-----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVH-LHSH  205 (596)
T ss_pred             HH-cCCEEEEEEEecCCC-----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEE-EEeC
Confidence            54 442   3333432 3     34566555554    33 589999999    66666555532   2222233 3333


Q ss_pred             hh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHHHH--HcC-CHHHHHHHHHHhhchh
Q psy9711         143 AG------YLLSGLLVGCA---GGINALS----AVLGGPICELYDLA--KAG-KWEEAMKLQHRLVKPD  195 (198)
Q Consensus       143 d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~~~--~~g-d~~~A~~l~~~~~~l~  195 (198)
                      +.      ..+.++.+|++   +.+++++    |..-+.++...+..  ..| |.+...++.+.+.+++
T Consensus       206 nt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr  274 (596)
T PRK14042        206 STSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVR  274 (596)
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            32      34567788974   4444444    33334433333321  111 4455555555444443

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=90.36  E-value=4  Score=32.60  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ..++++-+.+++   +..++...+.. +.+...+..+.+...++|++++.++.       .+.+.+..+.+. ..++|++
T Consensus        15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-------~~~~~~~l~~~~-~~~ipvV   86 (271)
T cd06312          15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD-------PDALDPAIKRAV-AAGIPVI   86 (271)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------hHHhHHHHHHHH-HCCCeEE
Confidence            344555555544   77777766665 77888889998888999999997642       333445555554 4589999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      +.|.+
T Consensus        87 ~~~~~   91 (271)
T cd06312          87 SFNAG   91 (271)
T ss_pred             EeCCC
Confidence            99864

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=90.35  E-value=9.2  Score=31.63  Aligned_cols=191  Identities=18%  Similarity=0.154  Sum_probs=103.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEE-EeCCCCcH--HHHHH-------------------------HHHHHHhcCCCE
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTII-AGTYCEST--RATID-------------------------LTQKAAKAGANA   53 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi-~gv~~~~~--~~~i~-------------------------~a~~a~~~Gad~   53 (198)
                      .+...+|.+|+.++++...+..+++.| +|.-..+.  .+++.                         -++.|.++|++.
T Consensus        11 ~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~~   90 (280)
T cd07945          11 TSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAKV   90 (280)
T ss_pred             CCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCCE
Confidence            355678888888888887555455543 22111121  12221                         244566779998


Q ss_pred             EEEcCCC---Cc--CCCCCHHHHHHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHH----cC-CCEEEEeeC-
Q psy9711          54 ALILCPY---YF--QKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRGVKDT-  119 (198)
Q Consensus        54 v~~~~P~---y~--~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~----~~-p~i~giK~s-  119 (198)
                      +-+..|.   +.  +...+.++.++-++++.+..   ++.+.++=.-....+..+++.+.+++    +. ...+.++|+ 
T Consensus        91 i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~  170 (280)
T cd07945          91 LNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTL  170 (280)
T ss_pred             EEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence            8888655   21  11234777777676666543   45555543211112245677776665    33 578999999 


Q ss_pred             ---CHHHHHHHHhh---cCC-CCeEEEecChh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHHHH---
Q psy9711         120 ---DNIKLANMANQ---TKD-LNFSVFAGSAG------YLLSGLLVGCA---GGINALS----AVLGGPICELYDLA---  176 (198)
Q Consensus       120 ---d~~~~~~~~~~---~~~-~~~~v~~G~d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~~~---  176 (198)
                         ++.++.++++.   ..+ -.+. +-+.+.      ..+.++..|++   +.++|++    |..-+.++.+.+..   
T Consensus       171 G~~~P~~v~~l~~~l~~~~~~~~i~-~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~  249 (280)
T cd07945         171 GILSPFETYTYISDMVKRYPNLHFD-FHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKV  249 (280)
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCeEE-EEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHHhcCC
Confidence               67766655532   221 2343 333332      23556788864   4455544    55566666555322   


Q ss_pred             HcC-CHHHHHHHHHHhhc
Q psy9711         177 KAG-KWEEAMKLQHRLVK  193 (198)
Q Consensus       177 ~~g-d~~~A~~l~~~~~~  193 (198)
                      ..| |.++..++.+.+..
T Consensus       250 ~t~idl~~l~~~~~~v~~  267 (280)
T cd07945         250 KTNIDEKRLNRASRLVET  267 (280)
T ss_pred             CcCcCHHHHHHHHHHHHH
Confidence            112 55666655555443

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []

Probab=90.34  E-value=0.59  Score=37.40  Aligned_cols=104  Identities=10%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHH-hcCCCEEEEcCCCCcCCCCCHHHHH-HHHHHHHccCCCCEEEEe
Q psy9711          14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAA-KAGANAALILCPYYFQKKMTEDLIY-EHFISVADNSPIPVIIYN   90 (198)
Q Consensus        14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~-~~Gad~v~~~~P~y~~~~~~~~~i~-~y~~~i~~~~~~pi~lYn   90 (198)
                      .+++.+.+.- +....+.+.....+++++..+.+. +.|+.|+-+.+....... ...... ..|+.. +..++||+++-
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~pv~~H~  137 (273)
T PF04909_consen   60 WLVELAAKHPDRFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDLGGFDP-DDPRLDDPIFEAA-EELGLPVLIHT  137 (273)
T ss_dssp             HHHHHHHHSTTTEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSETTCCT-TSGHCHHHHHHHH-HHHT-EEEEEE
T ss_pred             HHHHHHHHcCCCEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCCCcccc-ccHHHHHHHHHHH-Hhhccceeeec
Confidence            3444444433 555555666667888888888777 889999998876643322 244444 555554 45789999982


Q ss_pred             C----CCCcccccCHHHHHHHH-cCCCEEEEeeC
Q psy9711          91 N----TFVTNIDISVDTLVKLA-HHENIRGVKDT  119 (198)
Q Consensus        91 ~----P~~tg~~l~~~~l~~L~-~~p~i~giK~s  119 (198)
                      -    +..+.....+..+.+++ ++|++.=|=.-
T Consensus       138 g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H  171 (273)
T PF04909_consen  138 GMTGFPDAPSDPADPEELEELLERFPDLRIILAH  171 (273)
T ss_dssp             SHTHHHHHHHHHHHHHHHTTHHHHSTTSEEEESG
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHhcCCeEEEec
Confidence            1    11123345677777887 69986655544

The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=90.12  E-value=5  Score=34.04  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-----CC-HHHHHHHHHHHHccC
Q psy9711          12 KLKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-----MT-EDLIYEHFISVADNS   82 (198)
Q Consensus        12 r~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-----~~-~~~i~~y~~~i~~~~   82 (198)
                      -.++++.+++.. .+|||+| |+      +.+.++++.++|+|++.+. .|.-..-+     .. ++=-....++++++.
T Consensus       127 ~~e~I~~ir~~~p~~~vi~g~V~------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~  200 (326)
T PRK05458        127 VINMIQHIKKHLPETFVIAGNVG------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA  200 (326)
T ss_pred             HHHHHHHHHhhCCCCeEEEEecC------CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc
Confidence            345667776666 7999998 76      4556677888999998866 22211000     00 000122355666666


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      ++||+-     ..|..-+.+..+-|+
T Consensus       201 ~ipVIA-----dGGI~~~~Di~KaLa  221 (326)
T PRK05458        201 RKPIIA-----DGGIRTHGDIAKSIR  221 (326)
T ss_pred             CCCEEE-----eCCCCCHHHHHHHHH
Confidence            788764     245444445555554

>TIGR00510 lipA lipoate synthase

Probab=90.08  E-value=4  Score=34.24  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             CCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--------CCHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK--------MTEDLIYE   73 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--------~~~~~i~~   73 (198)
                      -|.+++.++++.+.+..     +.-+|+|. +.+-++.++..+...++|+|.+-+. +|+ +|+        .-..+-++
T Consensus       188 ~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~ig-qYl-~p~~~~~~v~~~~~p~~f~  264 (302)
T TIGR00510       188 ATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLG-QYL-RPSRRHLPVKRYVSPEEFD  264 (302)
T ss_pred             CCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEee-ccc-CCCCCCCccccCCCHHHHH
Confidence            36788888888888873     56678888 5688888888888889998877775 332 222        11334455


Q ss_pred             HHHHHHccCC
Q psy9711          74 HFISVADNSP   83 (198)
Q Consensus        74 y~~~i~~~~~   83 (198)
                      .|+.++...+
T Consensus       265 ~~~~~a~~~g  274 (302)
T TIGR00510       265 YYRSVALEMG  274 (302)
T ss_pred             HHHHHHHHcC
Confidence            6666665444

The family shows strong sequence conservation.

>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC

Probab=90.06  E-value=12  Score=32.36  Aligned_cols=129  Identities=12%  Similarity=0.072  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcCCCE-EEEcCCCCcCCCCCHHHHHHH----HHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          39 TIDLTQKAAKAGANA-ALILCPYYFQKKMTEDLIYEH----FISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~-v~~~~P~y~~~~~~~~~i~~y----~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      .++.++...++|+++ +.+.-|.-...-+++++..+|    ++.|++..   +.|+++|..    |.  +...+..+.+.
T Consensus       216 ~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~c----G~--~~~~l~~l~~~  289 (378)
T cd03308         216 MIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAARGQRIFLFFE----GD--WERYLEYLQEL  289 (378)
T ss_pred             HHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcC----CC--cHHHHHHHHhc
Confidence            456667777899997 566555533322347777644    47888765   467777553    32  23457777776


Q ss_pred             C--CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh-H------------HHHhhcCC--CeEEecccc-cc------
Q psy9711         111 E--NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY-L------------LSGLLVGC--AGGINALSA-VL------  165 (198)
Q Consensus       111 p--~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~-~------------~~~l~~G~--~G~is~~~n-~~------  165 (198)
                      +  .++++=+. |+....+.+    +++..+..+.+.. +            ...+..+.  .|+|-+.++ +.      
T Consensus       290 g~~~v~~~~~~~dl~~ak~~~----g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~  365 (378)
T cd03308         290 PKGKTVGLFEYGDPKKVKEKL----GDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAK  365 (378)
T ss_pred             CCCcEEEcCCCCCHHHHHHHh----CCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCC
Confidence            5  25666556 877665544    3444444443331 1            12233333  567766664 33      


Q ss_pred             hHHHHHHHHHHH
Q psy9711         166 GGPICELYDLAK  177 (198)
Q Consensus       166 P~~~~~l~~~~~  177 (198)
                      |+-+..+.++++
T Consensus       366 ~eNi~a~v~av~  377 (378)
T cd03308         366 PENLIAVIEFVR  377 (378)
T ss_pred             hHHHHHHHHHHh
Confidence            266677777654

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=90.05  E-value=6.7  Score=33.75  Aligned_cols=120  Identities=11%  Similarity=0.082  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeCC-----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGTY-----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL   70 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv~-----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~   70 (198)
                      |.+-|.+++..+++++      +.||.+=++           +.+.++++++++.+.+.|+|.+-+....|..+..... 
T Consensus       189 slenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~-  267 (361)
T cd04747         189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGS-  267 (361)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCcc-
Confidence            4566776666665554      456765443           2567899999999999999999886643322220000 


Q ss_pred             HHHHHHHHHccCCCCEEEEeC---CC--------Ccccc-cCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          71 IYEHFISVADNSPIPVIIYNN---TF--------VTNID-ISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        71 i~~y~~~i~~~~~~pi~lYn~---P~--------~tg~~-l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      -..+-+.+-+.+++||+.=..   |.        .-+.+ -+++...++.+..  .++++=-.   |+....++.
T Consensus       268 ~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~  342 (361)
T cd04747         268 ELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVR  342 (361)
T ss_pred             chhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHH
Confidence            012223344556899887321   00        00112 2778888877543  44444333   666666654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=90.02  E-value=9.3  Score=31.17  Aligned_cols=60  Identities=18%  Similarity=-0.030  Sum_probs=34.7

Q ss_pred             eEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          26 TIIAG-TYCESTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        26 pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      .+|+| ++-.|-+.+++.|+.++++|+..+--.      .|+-+..-  .++-++..+++++..++|++
T Consensus        17 ~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~--G~~gl~~L~~~~~~~Gl~~~   83 (250)
T PRK13397         17 NFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL--GLQGIRYLHEVCQEFGLLSV   83 (250)
T ss_pred             cEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC--CHHHHHHHHHHHHHcCCCEE
Confidence            45665 455566677777777777777655432      24433321  22355666666666677666

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=89.96  E-value=12  Score=32.20  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             CeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEE------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          25 KTIIAG-TYCESTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        25 ~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      +-||+| ++-.+.+.+++.|+..++.|+..+--      ..||-+..-  .++-+++++++++.+++|++-
T Consensus       102 l~vIAGPCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~--g~~gl~~L~~~~~e~Gl~~~t  170 (352)
T PRK13396        102 VVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGH--GESALELLAAAREATGLGIIT  170 (352)
T ss_pred             EEEEEeCCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCc--hHHHHHHHHHHHHHcCCcEEE
Confidence            346777 45567788999999999999876552      245545433  477778888888888888873

>PRK15408 autoinducer 2-binding protein lsrB; Provisional

Probab=89.93  E-value=4.1  Score=34.47  Aligned_cols=72  Identities=11%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          13 LKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .++.+-+.+++   +..++. +-+..+....++..+.+.+.|+|++++.|.     +  ++.+....+... ..++|++.
T Consensus        39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~-----d--~~al~~~l~~a~-~~gIpVV~  110 (336)
T PRK15408         39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV-----S--PDGLCPALKRAM-QRGVKVLT  110 (336)
T ss_pred             HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----C--HHHHHHHHHHHH-HCCCeEEE
Confidence            34444444444   777776 555556777788999999999999999743     2  555666666654 45899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|..
T Consensus       111 ~d~~  114 (336)
T PRK15408        111 WDSD  114 (336)
T ss_pred             eCCC
Confidence            9875

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=89.88  E-value=8  Score=30.22  Aligned_cols=30  Identities=23%  Similarity=0.096  Sum_probs=14.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      |...+..+.++....+|.+.++|+|.+=..
T Consensus       122 I~e~~~l~~~~i~~a~ria~e~GaD~IKTs  151 (203)
T cd00959         122 ILETGLLTDEEIIKACEIAIEAGADFIKTS  151 (203)
T ss_pred             EEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence            444444444444444555555555544443

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=89.86  E-value=9.5  Score=31.05  Aligned_cols=145  Identities=11%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             CCeEEEeC-CCCcHHHHHHHHHHHHhcCC-CEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711          24 KKTIIAGT-YCESTRATIDLTQKAAKAGA-NAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID   98 (198)
Q Consensus        24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Ga-d~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~   98 (198)
                      ++.++-.+ |..+.+|+++.++.|.+++- +-+   ++..|+|..|.  ..+.++--+.+.+ =++-++-|=.+      
T Consensus        62 ~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd--~~~tv~aa~~L~~-~Gf~vlpyc~~------  132 (250)
T PRK00208         62 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPD--PIETLKAAEILVK-EGFVVLPYCTD------  132 (250)
T ss_pred             CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcC--HHHHHHHHHHHHH-CCCEEEEEeCC------
Confidence            55555544 56678999999999999853 433   23348888777  8999998888874 35666645543      


Q ss_pred             cCHHHHHHHHcC------C--CEEEEeeC--CHHHHHHHHhhcCCCCeEEEec--C--hhhHHHHhhcCCCeEEeccccc
Q psy9711          99 ISVDTLVKLAHH------E--NIRGVKDT--DNIKLANMANQTKDLNFSVFAG--S--AGYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus        99 l~~~~l~~L~~~------p--~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G--~--d~~~~~~l~~G~~G~is~~~n~  164 (198)
                       ++.+.++|.+.      |  ..+|-..+  ++..+..+. +.  .++.|+.+  .  .+....++.+|++|++.+++-.
T Consensus       133 -d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~-e~--~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt  208 (250)
T PRK00208        133 -DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIII-EQ--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA  208 (250)
T ss_pred             -CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH-Hh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence             35666666643      3  44453333  656665555 32  34555543  2  2467788999999999888755


Q ss_pred             c---hHH-HHHHHHHHHcCCH
Q psy9711         165 L---GGP-ICELYDLAKAGKW  181 (198)
Q Consensus       165 ~---P~~-~~~l~~~~~~gd~  181 (198)
                      -   |.. ..++.+++++|+.
T Consensus       209 ka~dP~~ma~af~~Av~aGr~  229 (250)
T PRK00208        209 VAGDPVAMARAFKLAVEAGRL  229 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            5   544 4445555666653

>cd04732 HisA HisA

Probab=89.85  E-value=8.5  Score=30.45  Aligned_cols=137  Identities=10%  Similarity=0.115  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC-CEEEE-e
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI-PVIIY-N   90 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~-pi~lY-n   90 (198)
                      .++++.+.+.+++||++|-+=.+.+++    +.+.+.|||.+++....+..    ++    .++++++..+. ++++- +
T Consensus        62 ~~~i~~i~~~~~~pv~~~GgI~~~e~~----~~~~~~Gad~vvigs~~l~d----p~----~~~~i~~~~g~~~i~~sid  129 (234)
T cd04732          62 LELIEEIVKAVGIPVQVGGGIRSLEDI----ERLLDLGVSRVIIGTAAVKN----PE----LVKELLKEYGGERIVVGLD  129 (234)
T ss_pred             HHHHHHHHHhcCCCEEEeCCcCCHHHH----HHHHHcCCCEEEECchHHhC----hH----HHHHHHHHcCCceEEEEEE
Confidence            456666666668999998776665554    44445899999887655432    32    34444444432 22221 1


Q ss_pred             CC--------CCcccccCH-HHHHHHHcC--CCEE--EE-----eeC-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHH
Q psy9711          91 NT--------FVTNIDISV-DTLVKLAHH--ENIR--GV-----KDT-DNIKLANMANQTKDLNFSVFAGSA--GYLLSG  149 (198)
Q Consensus        91 ~P--------~~tg~~l~~-~~l~~L~~~--p~i~--gi-----K~s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~  149 (198)
                      .+        .......++ +.+.++.+.  ..++  .+     +.. |...+.++.+ ..+-.+..-.|..  +.+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~-~~~ipvi~~GGi~~~~di~~~  208 (234)
T cd04732         130 AKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAA-ATGIPVIASGGVSSLDDIKAL  208 (234)
T ss_pred             eeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHH-hcCCCEEEecCCCCHHHHHHH
Confidence            11        111123344 344445442  2222  22     222 5666666653 3322232222222  245566


Q ss_pred             hhcCCCeEEeccc
Q psy9711         150 LLVGCAGGINALS  162 (198)
Q Consensus       150 l~~G~~G~is~~~  162 (198)
                      +..|++|++.+.+
T Consensus       209 ~~~Ga~gv~vg~~  221 (234)
T cd04732         209 KELGVAGVIVGKA  221 (234)
T ss_pred             HHCCCCEEEEeHH
Confidence            7789999998876

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=89.77  E-value=5.8  Score=32.42  Aligned_cols=130  Identities=14%  Similarity=0.154  Sum_probs=74.2

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +-++.+.+.+++||+.    .+.----.++..|..+|||+|+++....      +++....+-..|...++-.++=-.  
T Consensus        99 ~dL~~v~~~~~~PvL~----KDFIid~~QI~eA~~~GADaVLLI~~~L------~~~~l~~l~~~a~~lGle~lVEVh--  166 (254)
T PF00218_consen   99 EDLRAVRKAVDLPVLR----KDFIIDPYQIYEARAAGADAVLLIAAIL------SDDQLEELLELAHSLGLEALVEVH--  166 (254)
T ss_dssp             HHHHHHHHHSSS-EEE----ES---SHHHHHHHHHTT-SEEEEEGGGS------GHHHHHHHHHHHHHTT-EEEEEES--
T ss_pred             HHHHHHHHHhCCCccc----ccCCCCHHHHHHHHHcCCCEeehhHHhC------CHHHHHHHHHHHHHcCCCeEEEEC--
Confidence            3444555445778776    1111113466777889999999997663      333455566667778887665321  


Q ss_pred             CcccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEecc
Q psy9711          94 VTNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINAL  161 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~  161 (198)
                            +.+.+.+..+ -+.|+||=.-       |+.+..++.. ..+++..+.  +|-.+  ........|++|++-|.
T Consensus       167 ------~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~-~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe  239 (254)
T PF00218_consen  167 ------NEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAP-LIPKDVIVISESGIKTPEDARRLARAGADAVLVGE  239 (254)
T ss_dssp             ------SHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHC-HSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESH
T ss_pred             ------CHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHh-hCccceeEEeecCCCCHHHHHHHHHCCCCEEEECH
Confidence                  3455666555 4789999764       4566666663 334444333  34332  34455678999999887


Q ss_pred             c
Q psy9711         162 S  162 (198)
Q Consensus       162 ~  162 (198)
                      +
T Consensus       240 ~  240 (254)
T PF00218_consen  240 A  240 (254)
T ss_dssp             H
T ss_pred             H
Confidence            6

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=89.76  E-value=8.9  Score=30.56  Aligned_cols=27  Identities=7%  Similarity=-0.022  Sum_probs=18.8

Q ss_pred             eEEEecCh-hhHHHHhhcCCCeEEeccc
Q psy9711         136 FSVFAGSA-GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       136 ~~v~~G~d-~~~~~~l~~G~~G~is~~~  162 (198)
                      +.+-.|-. +.+.....+|+++++.|.+
T Consensus       170 I~vdGGI~~eni~~l~~aGAd~vVvGSa  197 (220)
T PRK08883        170 LEIDGGVKVDNIREIAEAGADMFVAGSA  197 (220)
T ss_pred             EEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence            33444444 3566778899999999866

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=89.75  E-value=4.1  Score=33.87  Aligned_cols=101  Identities=10%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCCC--c---------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYCE--S---------TRATIDLTQKAAKAGANAALILCPY---YFQ   63 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~~--~---------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~   63 (198)
                      +..|+.+|-.+..+.+++.+   ++.|=   -.+++.  +         ..+.-+-.+++++.|+|++.+.--.   .++
T Consensus       105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~  184 (284)
T PRK12857        105 GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYK  184 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccC
Confidence            46789999999999999998   55552   123211  0         0111223344467799988887422   121


Q ss_pred             CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..  ++==++-.++|.+.+++|++++=     |..++.+.+.+..+..
T Consensus       185 ~~--p~Ld~~~L~~i~~~~~vPLVlHG-----gSG~~~e~~~~ai~~G  225 (284)
T PRK12857        185 GE--PKLDFDRLAKIKELVNIPIVLHG-----SSGVPDEAIRKAISLG  225 (284)
T ss_pred             CC--CcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence            11  22223456677777799998854     4457888888887554

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=89.75  E-value=1.4  Score=35.70  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      ..|+.++|.++++.+.+. +..|+.-+|..+.        .+-+++++..-++||+.|++-.-
T Consensus       108 i~l~~~~r~~~I~~~~~~-Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar  169 (244)
T PF02679_consen  108 IDLPEEERLRLIRKAKEE-GFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR  169 (244)
T ss_dssp             S---HHHHHHHHHHHCCT-TSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred             eeCCHHHHHHHHHHHHHC-CCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence            578999999999998766 7788887776553        56688999999999999999643

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=89.66  E-value=10  Score=34.38  Aligned_cols=82  Identities=20%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEEEeC------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTIIAGT------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      ...|.+|-.+.+..+++.+   +..|..+.      +..+.+..++.++.+.++|++.+.+.--. ...  +|.++.+.+
T Consensus       113 l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTv-G~~--~P~~v~~li  189 (526)
T TIGR00977       113 LQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTN-GGT--LPHEISEIT  189 (526)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCC-CCc--CHHHHHHHH
Confidence            4567888888877777776   45554322      24568999999999999999998776333 333  499999999


Q ss_pred             HHHHccCCCC-EEEE
Q psy9711          76 ISVADNSPIP-VIIY   89 (198)
Q Consensus        76 ~~i~~~~~~p-i~lY   89 (198)
                      +.+.+.++.+ |-+|
T Consensus       190 ~~l~~~~~~~~i~vH  204 (526)
T TIGR00977       190 TKVKRSLKQPQLGIH  204 (526)
T ss_pred             HHHHHhCCCCEEEEE
Confidence            9999988766 4444

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=89.66  E-value=9.5  Score=30.75  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=45.8

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH-----------------HHHHHHHHHHHccCCCCEEE--
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTE-----------------DLIYEHFISVADNSPIPVII--   88 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~-----------------~~i~~y~~~i~~~~~~pi~l--   88 (198)
                      +.-+|.++.+...+.++..++.|||.+-+--|+-.+. ++-                 +...+..+.+.+.+++|+++  
T Consensus         5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv-~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~   83 (242)
T cd04724           5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSDPV-ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMG   83 (242)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEE
Confidence            3456888899999999999999999999997774332 221                 24455566666666788777  


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      |-+|
T Consensus        84 y~n~   87 (242)
T cd04724          84 YYNP   87 (242)
T ss_pred             ecCH
Confidence            8444

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=89.62  E-value=0.83  Score=37.26  Aligned_cols=132  Identities=18%  Similarity=0.198  Sum_probs=84.2

Q ss_pred             CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC-C
Q psy9711          24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT-F   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P-~   93 (198)
                      +.+||+=+--.|.        .+-.+.++.+++.||+++.++. |.||+.+  .    +|.+.+.+++++||.--|+= .
T Consensus        45 ~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs--~----e~L~~v~~~v~~PvL~KDFiiD  118 (254)
T COG0134          45 KPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGS--F----EDLRAVRAAVDLPVLRKDFIID  118 (254)
T ss_pred             CceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCC--H----HHHHHHHHhcCCCeeeccCCCC
Confidence            8889987632222        3457799999999999999996 8888876  4    56688989999999988761 1


Q ss_pred             C--------ccc--------ccCHHHHHHH------------------------Hc-CCCEEEEeeC-------CHHHHH
Q psy9711          94 V--------TNI--------DISVDTLVKL------------------------AH-HENIRGVKDT-------DNIKLA  125 (198)
Q Consensus        94 ~--------tg~--------~l~~~~l~~L------------------------~~-~p~i~giK~s-------d~~~~~  125 (198)
                      .        .|-        .++.+.+.+|                        .+ -+.|+||=.-       |.....
T Consensus       119 ~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~  198 (254)
T COG0134         119 PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTE  198 (254)
T ss_pred             HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHH
Confidence            0        121        2344433333                        33 2467777654       555655


Q ss_pred             HHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEeccc
Q psy9711         126 NMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       126 ~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~  162 (198)
                      ++.. ..+++..+.  +|..+  .+......|++|+.-|.+
T Consensus       199 ~la~-~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~s  238 (254)
T COG0134         199 KLAP-LIPKDVILISESGISTPEDVRRLAKAGADAFLVGEA  238 (254)
T ss_pred             HHHh-hCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHH
Confidence            5552 344443333  33332  344556788999988876

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=89.61  E-value=9.5  Score=30.65  Aligned_cols=139  Identities=13%  Similarity=0.029  Sum_probs=85.7

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCC--cCCC------CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYY--FQKK------MTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y--~~~~------~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.|+++++.+.+.++..+.++.+++. +|.+=+-  .|.-  .+..      .+++.+.+..+.+.+ +++||.+=-.+.
T Consensus        72 ~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g  149 (233)
T cd02911          72 NVLVGVNVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG  149 (233)
T ss_pred             CCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence            78999999999999999999999885 5777664  2331  0100      247888888898876 689998866543


Q ss_pred             CcccccCHHHHHHHHcCCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEE-ecC-h--hhHHHHhhcCCCeEEecc
Q psy9711          94 VTNIDISVDTLVKLAHHENIRGVKDT--------DNIKLANMANQTKDLNFSVF-AGS-A--GYLLSGLLVGCAGGINAL  161 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~-~G~-d--~~~~~~l~~G~~G~is~~  161 (198)
                      .+  .-+.++...|.+.. +.++--+        |+..+.++    . .++.|+ +|. .  +.....+..|+||++.|-
T Consensus       150 ~~--~~~~~la~~l~~aG-~d~ihv~~~~~g~~ad~~~I~~i----~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR  221 (233)
T cd02911         150 VD--VDDEELARLIEKAG-ADIIHVDAMDPGNHADLKKIRDI----S-TELFIIGNNSVTTIESAKEMFSYGADMVSVAR  221 (233)
T ss_pred             cC--cCHHHHHHHHHHhC-CCEEEECcCCCCCCCcHHHHHHh----c-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence            32  12233333443321 1222212        33333322    1 334444 332 1  245566778999999999


Q ss_pred             cccchHHHHHHH
Q psy9711         162 SAVLGGPICELY  173 (198)
Q Consensus       162 ~n~~P~~~~~l~  173 (198)
                      + .-|..+.++.
T Consensus       222 ~-~~p~~~~~~~  232 (233)
T cd02911         222 A-SLPENIEWLV  232 (233)
T ss_pred             C-CCchHHHHhh
Confidence            8 7888887664

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=89.58  E-value=5.1  Score=31.75  Aligned_cols=73  Identities=12%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++.+.+++   +.-++...+..+.+...+..+.+.+.++|++++.++.       .+...+.++.+ .+.++|+++
T Consensus        14 ~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~-------~~~~~~~~~~~-~~~~ipvV~   85 (267)
T cd06322          14 YIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVD-------SKGIRAAIAKA-KKAGIPVIT   85 (267)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hhhhHHHHHHH-HHCCCCEEE
Confidence            344555555555   6677777666677778888888888999999997642       22233445554 356899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        86 ~~~~   89 (267)
T cd06322          86 VDIA   89 (267)
T ss_pred             Eccc
Confidence            9965

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.53  E-value=9.6  Score=30.62  Aligned_cols=138  Identities=12%  Similarity=0.078  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-e
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-N   90 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n   90 (198)
                      ..++++.+.+.+.+||.+|-|=.+.+++    +.+-++||+.+++..-.+..    +    +.++++++..+-.+++- |
T Consensus        64 n~~~I~~i~~~~~~pi~vGGGIrs~e~v----~~~l~~Ga~kvvigt~a~~~----~----~~l~~~~~~fg~~ivvslD  131 (234)
T PRK13587         64 EFDYIKSLRRLTTKDIEVGGGIRTKSQI----MDYFAAGINYCIVGTKGIQD----T----DWLKEMAHTFPGRIYLSVD  131 (234)
T ss_pred             hHHHHHHHHhhcCCeEEEcCCcCCHHHH----HHHHHCCCCEEEECchHhcC----H----HHHHHHHHHcCCCEEEEEE
Confidence            4567777777558999999887776664    44556899999876544332    2    24444444432112221 1


Q ss_pred             C-------C-CCcccccCHH-HHHHHHcCC--CEEEEee-------C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHH
Q psy9711          91 N-------T-FVTNIDISVD-TLVKLAHHE--NIRGVKD-------T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSG  149 (198)
Q Consensus        91 ~-------P-~~tg~~l~~~-~l~~L~~~p--~i~giK~-------s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~  149 (198)
                      .       . ......+++. .+.++.+.+  .|+-.-.       . |...+.++.+ ..+-++.+-.|..  +.+...
T Consensus       132 ~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~-~~~ipvi~~GGi~s~edi~~l  210 (234)
T PRK13587        132 AYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK-ATTIPVIASGGIRHQQDIQRL  210 (234)
T ss_pred             eeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH-hCCCCEEEeCCCCCHHHHHHH
Confidence            1       0 0112234444 444544433  3333222       2 4555666653 3333343333332  345666


Q ss_pred             hhcCCCeEEeccc
Q psy9711         150 LLVGCAGGINALS  162 (198)
Q Consensus       150 l~~G~~G~is~~~  162 (198)
                      +..|++|++.|.+
T Consensus       211 ~~~G~~~vivG~a  223 (234)
T PRK13587        211 ASLNVHAAIIGKA  223 (234)
T ss_pred             HHcCCCEEEEhHH
Confidence            7889999999875

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=89.48  E-value=1.3  Score=37.71  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHH---HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKA---AKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a---~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +.+.-.+.++.+++.+   ++||++ |=...+.++.+++++.+   .+.|+.++.+.--.|..+   .++-++..++|.+
T Consensus       262 ~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~---~~ea~~~~~~i~~  338 (348)
T PRK09250        262 TSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP---MAEGVKLLNAIQD  338 (348)
T ss_pred             cccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC---cHHHHHHHHHHHH
Confidence            3344455577777776   889755 55555788999999999   999999999998888877   4556677777766


Q ss_pred             cC
Q psy9711          81 NS   82 (198)
Q Consensus        81 ~~   82 (198)
                      -+
T Consensus       339 i~  340 (348)
T PRK09250        339 VY  340 (348)
T ss_pred             Hh
Confidence            43

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=89.46  E-value=1.9  Score=35.06  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCE
Q psy9711          36 TRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENI  113 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i  113 (198)
                      ..+.++.++.+++.|++.+.+..  .--...    .--.++++.+.+.+++||+.      .|-.-+++.+.++.+..++
T Consensus       154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~----g~~~~~~~~i~~~~~ipvia------~GGi~s~~di~~~~~~g~~  223 (254)
T TIGR00735       154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKS----GYDLELTKAVSEAVKIPVIA------SGGAGKPEHFYEAFTKGKA  223 (254)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEeCcCcccCCC----CCCHHHHHHHHHhCCCCEEE------eCCCCCHHHHHHHHHcCCc
Confidence            45678999999999999999953  211111    11146788899889999887      4555688999999887777


Q ss_pred             EEEee
Q psy9711         114 RGVKD  118 (198)
Q Consensus       114 ~giK~  118 (198)
                      .|+=.
T Consensus       224 dgv~~  228 (254)
T TIGR00735       224 DAALA  228 (254)
T ss_pred             ceeeE
Confidence            77544

>PRK00915 2-isopropylmalate synthase; Validated

Probab=89.39  E-value=6.3  Score=35.54  Aligned_cols=81  Identities=15%  Similarity=0.067  Sum_probs=59.8

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|..+.   +..+.+..++.++.+.++|++.+.+.--. ...  +|+++.+.++.+.
T Consensus       112 ~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-G~~--~P~~~~~~i~~l~  188 (513)
T PRK00915        112 KMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTV-GYT--TPEEFGELIKTLR  188 (513)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-CCC--CHHHHHHHHHHHH
Confidence            456777776666666666   56676665   34457889999999999999987665443 333  3999999999998


Q ss_pred             ccCC----CCEEEE
Q psy9711          80 DNSP----IPVIIY   89 (198)
Q Consensus        80 ~~~~----~pi~lY   89 (198)
                      +..+    +|+-++
T Consensus       189 ~~~~~~~~v~l~~H  202 (513)
T PRK00915        189 ERVPNIDKAIISVH  202 (513)
T ss_pred             HhCCCcccceEEEE
Confidence            8775    788775

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=89.39  E-value=5.5  Score=32.47  Aligned_cols=81  Identities=11%  Similarity=0.055  Sum_probs=45.3

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH---
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA---  108 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~---  108 (198)
                      ..+..+...+.++.+++.|.....-.. .-...  +++.+.+..+.+.+ .+...+  ..+...| .++|+.+.+|.   
T Consensus       107 ~~s~~~~~~~~i~~ak~~G~~v~~~~~-~~~~~--~~~~~~~~~~~~~~-~G~d~i--~l~DT~G-~~~P~~v~~lv~~l  179 (263)
T cd07943         107 HCTEADVSEQHIGAARKLGMDVVGFLM-MSHMA--SPEELAEQAKLMES-YGADCV--YVTDSAG-AMLPDDVRERVRAL  179 (263)
T ss_pred             chhhHHHHHHHHHHHHHCCCeEEEEEE-eccCC--CHHHHHHHHHHHHH-cCCCEE--EEcCCCC-CcCHHHHHHHHHHH
Confidence            334467788888888888864322221 11223  38888888887764 344433  3455556 45555555444   


Q ss_pred             -c-CCC-EEEEeeC
Q psy9711         109 -H-HEN-IRGVKDT  119 (198)
Q Consensus       109 -~-~p~-i~giK~s  119 (198)
                       + .+. -+|+-.-
T Consensus       180 ~~~~~~~~l~~H~H  193 (263)
T cd07943         180 REALDPTPVGFHGH  193 (263)
T ss_pred             HHhCCCceEEEEec
Confidence             2 344 4555444

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=89.37  E-value=10  Score=30.81  Aligned_cols=140  Identities=12%  Similarity=0.101  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CCE--
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IPV--   86 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~pi--   86 (198)
                      ..++++.+++...+||++|-|-.+.+++.++    .+.|++++.+-.=.+..    +    +..++++++.+   +++  
T Consensus        62 n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l----~~~G~~~vvigs~~~~~----~----~~~~~~~~~~~~~~i~vsi  129 (258)
T PRK01033         62 NYELIENLASECFMPLCYGGGIKTLEQAKKI----FSLGVEKVSINTAALED----P----DLITEAAERFGSQSVVVSI  129 (258)
T ss_pred             cHHHHHHHHHhCCCCEEECCCCCCHHHHHHH----HHCCCCEEEEChHHhcC----H----HHHHHHHHHhCCCcEEEEE
Confidence            3567777777668999999888777664444    46799999886433322    3    23344443321   111  


Q ss_pred             ----------EEEeCCCCcccccCHHHHH-HHHcC--CCEEEE-------eeC-CHHHHHHHHhhcCCCCeEEE-ec-Ch
Q psy9711          87 ----------IIYNNTFVTNIDISVDTLV-KLAHH--ENIRGV-------KDT-DNIKLANMANQTKDLNFSVF-AG-SA  143 (198)
Q Consensus        87 ----------~lYn~P~~tg~~l~~~~l~-~L~~~--p~i~gi-------K~s-d~~~~~~~~~~~~~~~~~v~-~G-~d  143 (198)
                                .++..-+.....+++..+. ++.+.  ..|+-.       ... |++.+.++.+ ..  ++.|+ +| ..
T Consensus       130 D~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~-~~--~ipvIasGGv~  206 (258)
T PRK01033        130 DVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRN-AL--KIPLIALGGAG  206 (258)
T ss_pred             EEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHh-hC--CCCEEEeCCCC
Confidence                      1111111112345555444 44342  334422       112 6777777663 33  33343 33 22


Q ss_pred             --hhHHHHh-hcCCCeEEecccccch
Q psy9711         144 --GYLLSGL-LVGCAGGINALSAVLG  166 (198)
Q Consensus       144 --~~~~~~l-~~G~~G~is~~~n~~P  166 (198)
                        +.+...+ ..|++|++.|.+-.+-
T Consensus       207 s~eD~~~l~~~~GvdgVivg~a~~~~  232 (258)
T PRK01033        207 SLDDIVEAILNLGADAAAAGSLFVFK  232 (258)
T ss_pred             CHHHHHHHHHHCCCCEEEEcceeeeC
Confidence              2455566 6899999999885553

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=89.34  E-value=9.3  Score=30.21  Aligned_cols=139  Identities=17%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ..+|.++..++++.+.+....|+.+++-..+. ....+.++.+.++|+|++.+..-    .   ...+.+..+    ..+
T Consensus        34 ~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~----~---~~~~~~~~~----~~~  102 (236)
T cd04730          34 GYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG----P---PAEVVERLK----AAG  102 (236)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC----C---CHHHHHHHH----HcC
Confidence            34678888888888876543466666655432 35567778888999999987422    2   333333333    346


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEee------C-----C---HHHHHHHHhhcCCCCeEEEecCh--hhHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD------T-----D---NIKLANMANQTKDLNFSVFAGSA--GYLL  147 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~------s-----d---~~~~~~~~~~~~~~~~~v~~G~d--~~~~  147 (198)
                      ++++.- .       -+.+.+.++.+.. .-+++.      +     +   ...+.++. +..+-.+-.-.|..  +...
T Consensus       103 i~~i~~-v-------~~~~~~~~~~~~g-ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~-~~~~~Pvi~~GGI~~~~~v~  172 (236)
T cd04730         103 IKVIPT-V-------TSVEEARKAEAAG-ADALVAQGAEAGGHRGTFDIGTFALVPEVR-DAVDIPVIAAGGIADGRGIA  172 (236)
T ss_pred             CEEEEe-C-------CCHHHHHHHHHcC-CCEEEEeCcCCCCCCCccccCHHHHHHHHH-HHhCCCEEEECCCCCHHHHH
Confidence            776542 1       1345556655432 222222      1     1   22334433 22233333333433  3466


Q ss_pred             HHhhcCCCeEEeccccc
Q psy9711         148 SGLLVGCAGGINALSAV  164 (198)
Q Consensus       148 ~~l~~G~~G~is~~~n~  164 (198)
                      ..+..|++|++.+.+.+
T Consensus       173 ~~l~~GadgV~vgS~l~  189 (236)
T cd04730         173 AALALGADGVQMGTRFL  189 (236)
T ss_pred             HHHHcCCcEEEEchhhh
Confidence            77889999999887643

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases

Probab=89.34  E-value=11  Score=31.04  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHH----HHHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKK--MTEDL----IYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~----i~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      .++.++...++|+|++.+.-|......  ++++.    +..|++.+.+..   +.|+++|..-    ..  ...+..|.+
T Consensus       146 ~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg----~~--~~~~~~l~~  219 (306)
T cd00465         146 ILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCY----DA--ADLLEEMIQ  219 (306)
T ss_pred             HHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECC----CH--HHHHHHHHH
Confidence            456666777899999999988764330  12444    346678888754   5688887753    22  456777776


Q ss_pred             CC-CEEEE
Q psy9711         110 HE-NIRGV  116 (198)
Q Consensus       110 ~p-~i~gi  116 (198)
                      .+ ++..+
T Consensus       220 ~~~d~~~~  227 (306)
T cd00465         220 LGVDVISF  227 (306)
T ss_pred             hCcceEec
Confidence            54 55444

Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=89.30  E-value=8  Score=32.31  Aligned_cols=157  Identities=10%  Similarity=0.024  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCC------c--CCCCCHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYY------F--QKKMTEDLIYEHF   75 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y------~--~~~~~~~~i~~y~   75 (198)
                      .+|.+|..+.++.+.+.+.+||++=+  |-.+..++.+.++...++|+.++.+---.+      .  +.-.+.++..+-.
T Consensus        60 ~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI  139 (292)
T PRK11320         60 ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRI  139 (292)
T ss_pred             CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHH
Confidence            68999999999999887799999954  433888999999999999999999964321      1  1112478888888


Q ss_pred             HHHHccC-CCCEEEEeC-CCCcccccCHHHHHHHHc---C-CCEEEEeeC-CHHHHHHHHhhcCCCCe--EEEecC-hh-
Q psy9711          76 ISVADNS-PIPVIIYNN-TFVTNIDISVDTLVKLAH---H-ENIRGVKDT-DNIKLANMANQTKDLNF--SVFAGS-AG-  144 (198)
Q Consensus        76 ~~i~~~~-~~pi~lYn~-P~~tg~~l~~~~l~~L~~---~-p~i~giK~s-d~~~~~~~~~~~~~~~~--~v~~G~-d~-  144 (198)
                      +...++. +-+++|==- -......+ .+.+.|...   - -..+.+=-. +...+.++.+. .+-.+  .+..+. .. 
T Consensus       140 ~Aa~~a~~~~d~~IiARTDa~~~~g~-deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~-~~~Pl~~n~~~~~~~p~  217 (292)
T PRK11320        140 KAAVDARTDPDFVIMARTDALAVEGL-DAAIERAQAYVEAGADMIFPEAMTELEMYRRFADA-VKVPILANITEFGATPL  217 (292)
T ss_pred             HHHHHhccCCCeEEEEecCcccccCH-HHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHh-cCCCEEEEeccCCCCCC
Confidence            8888765 566666311 00111122 356666542   1 123333212 56666665532 22233  333322 11 


Q ss_pred             -hHHHHhhcCCCeEEeccccc
Q psy9711         145 -YLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       145 -~~~~~l~~G~~G~is~~~n~  164 (198)
                       ..-..-.+|.+=++-+...+
T Consensus       218 ~s~~~L~~lGv~~v~~~~~~~  238 (292)
T PRK11320        218 FTTEELASAGVAMVLYPLSAF  238 (292)
T ss_pred             CCHHHHHHcCCcEEEEChHHH
Confidence             23344567888776665543

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=89.28  E-value=3.9  Score=34.17  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEEE--e-CCC-------CcHHHHHHHHHHHHhcCCCEEEEcC-CC---CcCCCCC
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTIIA--G-TYC-------ESTRATIDLTQKAAKAGANAALILC-PY---YFQKKMT   67 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~--g-v~~-------~~~~~~i~~a~~a~~~Gad~v~~~~-P~---y~~~~~~   67 (198)
                      ..++.+|..+..+.+++.+   +++|=+  | +++       .+.-...+.++.+.+.|+|.+-+.- |.   |...+  
T Consensus       108 S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~--  185 (293)
T PRK07315        108 SHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENW--  185 (293)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCC--
Confidence            4689999999999999987   565522  1 111       0111234445555578999988872 44   43211  


Q ss_pred             HHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          68 EDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        68 ~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..-=++..++|.+++ ++|++++     .|..++.+.+.++.+..
T Consensus       186 k~l~~e~L~~i~~~~~~iPlVlh-----GGSGi~~e~~~~~i~~G  225 (293)
T PRK07315        186 EGLDLDHLEKLTEAVPGFPIVLH-----GGSGIPDDQIQEAIKLG  225 (293)
T ss_pred             CcCCHHHHHHHHHhccCCCEEEE-----CCCCCCHHHHHHHHHcC
Confidence            222245678888888 5999885     35568888888887543

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=89.25  E-value=13  Score=31.73  Aligned_cols=140  Identities=10%  Similarity=0.071  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKA--GANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~--Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      ++.|++.+.++.+......-+.+.+|.  .++..+.++...++  |+|.+.+=.-.-.     .+.+++..+.|-+..+-
T Consensus        78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~--~~~d~er~~~L~~a~~~~d~iviD~AhGh-----s~~~i~~ik~ir~~~p~  150 (343)
T TIGR01305        78 YSVDEWKAFATNSSPDCLQNVAVSSGS--SDNDLEKMTSILEAVPQLKFICLDVANGY-----SEHFVEFVKLVREAFPE  150 (343)
T ss_pred             CCHHHHHHHHHhhcccccceEEEEecc--CHHHHHHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHhhCCC
Confidence            799999999987665542223333332  33445666666666  5999888655422     56666777777666654


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHH---hhcCCCCeEEEe-c---C
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DNIKLANMA---NQTKDLNFSVFA-G---S  142 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~---~~~~~~~~~v~~-G---~  142 (198)
                      +.++      -|+-.+++...+|.+. ..-|+|.+               ...++..+.   +...+.+..|+. |   .
T Consensus       151 ~~vi------aGNV~T~e~a~~Li~a-GAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~  223 (343)
T TIGR01305       151 HTIM------AGNVVTGEMVEELILS-GADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTC  223 (343)
T ss_pred             CeEE------EecccCHHHHHHHHHc-CCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCc
Confidence            4444      4667899999999853 33344432               113333332   112223555553 2   1


Q ss_pred             hhhHHHHhhcCCCeEEec
Q psy9711         143 AGYLLSGLLVGCAGGINA  160 (198)
Q Consensus       143 d~~~~~~l~~G~~G~is~  160 (198)
                      ...+.-++.+|++.++.|
T Consensus       224 ~gDI~KALA~GAd~VMlG  241 (343)
T TIGR01305       224 PGDVAKAFGAGADFVMLG  241 (343)
T ss_pred             hhHHHHHHHcCCCEEEEC
Confidence            245788999999999877

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=89.24  E-value=13  Score=31.60  Aligned_cols=149  Identities=13%  Similarity=0.072  Sum_probs=90.1

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC--------CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK--------MTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~--------~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ..|+++++.+++.++..+-++.++++|+|++-+-  .|....-+        .+++-+.+-.+++-++++.||.+.--.+
T Consensus        64 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g  143 (333)
T PRK11815         64 EHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG  143 (333)
T ss_pred             CCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence            7899999999999999999999999999999765  34321100        1367777788888878889999875333


Q ss_pred             CcccccCH----HHHHHHHcCCCEEEEeeC--------------------CHHHHHHHHhhcCCCCeEEE-ecChh---h
Q psy9711          94 VTNIDISV----DTLVKLAHHENIRGVKDT--------------------DNIKLANMANQTKDLNFSVF-AGSAG---Y  145 (198)
Q Consensus        94 ~tg~~l~~----~~l~~L~~~p~i~giK~s--------------------d~~~~~~~~~~~~~~~~~v~-~G~d~---~  145 (198)
                      ..+.. +.    +.+..|.+. ++.++-.+                    ++..+.++. +.. +++.|+ +|.=.   .
T Consensus       144 ~~~~~-t~~~~~~~~~~l~~a-G~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~-~~~-~~iPVI~nGgI~s~ed  219 (333)
T PRK11815        144 IDDQD-SYEFLCDFVDTVAEA-GCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLK-RDF-PHLTIEINGGIKTLEE  219 (333)
T ss_pred             eCCCc-CHHHHHHHHHHHHHh-CCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHH-HhC-CCCeEEEECCcCCHHH
Confidence            33321 22    233333221 12222111                    344454443 222 344444 44321   1


Q ss_pred             HHHHhhcCCCeEEeccccc-chHHHHHHHHHHH
Q psy9711         146 LLSGLLVGCAGGINALSAV-LGGPICELYDLAK  177 (198)
Q Consensus       146 ~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~  177 (198)
                      ... +..|++|++.|-+.+ -|.++.++-+.+.
T Consensus       220 a~~-~l~~aDgVmIGRa~l~nP~~~~~~~~~~~  251 (333)
T PRK11815        220 AKE-HLQHVDGVMIGRAAYHNPYLLAEVDRELF  251 (333)
T ss_pred             HHH-HHhcCCEEEEcHHHHhCCHHHHHHHHHhc
Confidence            223 334899999998865 4888877755444

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs

Probab=89.20  E-value=5.9  Score=32.40  Aligned_cols=74  Identities=9%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          11 EKLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      =+..+++.+.+++   +..++. +.+..+.+...+..+.+.+.++|++++.++.       .+.+.+.++.+ ...++|+
T Consensus        13 f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~-------~~~~~~~~~~~-~~~~iPv   84 (298)
T cd06302          13 YFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPND-------PDALEPVLKKA-REAGIKV   84 (298)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-------HHHHHHHHHHH-HHCCCeE
Confidence            3445555555555   677764 5666677888888988888999999997532       34344555655 3568999


Q ss_pred             EEEeCC
Q psy9711          87 IIYNNT   92 (198)
Q Consensus        87 ~lYn~P   92 (198)
                      ++.|.+
T Consensus        85 V~v~~~   90 (298)
T cd06302          85 VTHDSD   90 (298)
T ss_pred             EEEcCC
Confidence            999975

Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=89.13  E-value=1.4  Score=35.37  Aligned_cols=77  Identities=13%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEE
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR  114 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~  114 (198)
                      +..++++.++.+.+.|+|.+.+..-. ...+ .+.--.++.+.+.+.+++|++.      .|---+++.+.++.+..++.
T Consensus       147 ~~~~~~~~~~~l~~~G~d~i~v~~i~-~~g~-~~g~~~~~i~~i~~~~~~pvia------~GGi~~~~di~~~l~~~g~d  218 (243)
T cd04731         147 TGLDAVEWAKEVEELGAGEILLTSMD-RDGT-KKGYDLELIRAVSSAVNIPVIA------SGGAGKPEHFVEAFEEGGAD  218 (243)
T ss_pred             cCCCHHHHHHHHHHCCCCEEEEeccC-CCCC-CCCCCHHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHHHhCCCC
Confidence            35677899999999999999996421 1111 0111246678888888999887      44455788899888766665


Q ss_pred             EEeeC
Q psy9711         115 GVKDT  119 (198)
Q Consensus       115 giK~s  119 (198)
                      |+=-+
T Consensus       219 gv~vg  223 (243)
T cd04731         219 AALAA  223 (243)
T ss_pred             EEEEe
Confidence            55554

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=89.13  E-value=3.8  Score=33.56  Aligned_cols=80  Identities=19%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhc---CCeEEEeC--CCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           9 EEEKLKIISTLRQET---KKTIIAGT--YCES-----------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---~~pvi~gv--~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      .++|..+++..-+.+   ++|.++-.  ....           ....++-++..-+.|+|-+=+--|.|....  +++..
T Consensus       142 neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPvyveGe--~~ea~  219 (306)
T COG3684         142 NEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPVYVEGE--QEEAA  219 (306)
T ss_pred             hHHHHHHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecceeccCc--cHHHH
Confidence            357888888888887   88877653  1111           234455666667889999999999998876  99999


Q ss_pred             HHHHHHHccCCCCEEEEe
Q psy9711          73 EHFISVADNSPIPVIIYN   90 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn   90 (198)
                      .+|++..+.+++|.++--
T Consensus       220 ~~f~~~~~~~~lP~i~LS  237 (306)
T COG3684         220 AAFQRQNDHINLPWIYLS  237 (306)
T ss_pred             HHHHHhhcCCCCCeEEEe
Confidence            999999999999988744

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=89.12  E-value=2.7  Score=35.91  Aligned_cols=70  Identities=20%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCC--CEEEEcC-------CCCcCCCCCHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGA--NAALILC-------PYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Ga--d~v~~~~-------P~y~~~~~~~~~i~~y~~   76 (198)
                      .|.+|-.+.++.+++.+.+|+++ |-|. +.++.++..+.|.++|+  .|+++.-       |.|..+.  .+...++.+
T Consensus       224 ~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~--~~~~~~~l~  300 (340)
T PRK12858        224 YTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEG--EEARRAWLN  300 (340)
T ss_pred             ccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCC--HHHHHHHHH
Confidence            47777778888888777888766 5554 88999999999999999  8998863       4455555  777766665


Q ss_pred             HHH
Q psy9711          77 SVA   79 (198)
Q Consensus        77 ~i~   79 (198)
                      ...
T Consensus       301 ~~g  303 (340)
T PRK12858        301 TEG  303 (340)
T ss_pred             HHh
Confidence            543

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=88.96  E-value=9.8  Score=29.97  Aligned_cols=122  Identities=12%  Similarity=0.077  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCCeEEEeCCC----C-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYC----E-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~----~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      .+++.+++..++||.+=+-.    .     -.+...+-++.++++|+|++++..=.-... . +.+..+.+-+.+.  ++
T Consensus        40 g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~-i-D~~~~~~Li~~a~--~~  115 (201)
T PF03932_consen   40 GLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGE-I-DEEALEELIEAAG--GM  115 (201)
T ss_dssp             HHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSS-B--HHHHHHHHHHHT--TS
T ss_pred             HHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCC-c-CHHHHHHHHHhcC--CC
Confidence            46666666658887664421    1     135567888899999999999874211111 1 4444444444443  79


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEEecCh
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSA  143 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~~G~d  143 (198)
                      |+.++-....+-  =+.+.+..|.++ ++..|=-|        +.+.+.++.++ ...++.|+.|..
T Consensus       116 ~~tFHRAfD~~~--d~~~al~~L~~l-G~~rVLTSGg~~~a~~g~~~L~~lv~~-a~~~i~Im~GgG  178 (201)
T PF03932_consen  116 PVTFHRAFDEVP--DPEEALEQLIEL-GFDRVLTSGGAPTALEGIENLKELVEQ-AKGRIEIMPGGG  178 (201)
T ss_dssp             EEEE-GGGGGSS--THHHHHHHHHHH-T-SEEEESTTSSSTTTCHHHHHHHHHH-HTTSSEEEEESS
T ss_pred             eEEEeCcHHHhC--CHHHHHHHHHhc-CCCEEECCCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCC
Confidence            999875433221  134566777765 56665433        56778777743 457888988764

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=88.94  E-value=14  Score=32.77  Aligned_cols=123  Identities=13%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHH
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV  105 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~  105 (198)
                      +++|..-....+..+.++.+.++|+|.+.+-...   ..  .+.+.+..+.|.+.. ++||+.       |.-.+++...
T Consensus       213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~---g~--~~~~~~~i~~i~~~~~~~~vi~-------G~v~t~~~a~  280 (450)
T TIGR01302       213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSH---GH--SIYVIDSIKEIKKTYPDLDIIA-------GNVATAEQAK  280 (450)
T ss_pred             EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCC---Cc--HhHHHHHHHHHHHhCCCCCEEE-------EeCCCHHHHH
Confidence            3344332234678899999999999999986544   22  456777777777664 699888       6678899998


Q ss_pred             HHHcCCCEEEEeeC---------------CHHHH---HHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccc
Q psy9711         106 KLAHHENIRGVKDT---------------DNIKL---ANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       106 ~L~~~p~i~giK~s---------------d~~~~---~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~  162 (198)
                      .|.+. .+-+||.+               ...++   .+..+.....++.|+.  |.-  ..+..++.+|++.++.|..
T Consensus       281 ~l~~a-Gad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~  358 (450)
T TIGR01302       281 ALIDA-GADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSL  358 (450)
T ss_pred             HHHHh-CCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence            88863 22233211               11122   2222111123456665  433  3577899999999988765

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK09389 (R)-citramalate synthase; Provisional

Probab=88.92  E-value=6.3  Score=35.32  Aligned_cols=81  Identities=20%  Similarity=0.094  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|.++.   +..+.+..++.++.+.++|++.+.+. -.....  +|.++.+.++.+.
T Consensus       106 ~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~--~P~~~~~lv~~l~  182 (488)
T PRK09389        106 KKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFC-DTVGIL--TPEKTYELFKRLS  182 (488)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCc--CHHHHHHHHHHHH
Confidence            467777777777777766   55555543   33456778899999999999986664 333333  4999999999999


Q ss_pred             ccCCCCEEEE
Q psy9711          80 DNSPIPVIIY   89 (198)
Q Consensus        80 ~~~~~pi~lY   89 (198)
                      +..++|+-+|
T Consensus       183 ~~~~v~l~~H  192 (488)
T PRK09389        183 ELVKGPVSIH  192 (488)
T ss_pred             hhcCCeEEEE
Confidence            8888888875

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=88.90  E-value=14  Score=32.71  Aligned_cols=154  Identities=14%  Similarity=0.099  Sum_probs=76.2

Q ss_pred             EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE---EEEeC-CCCcccccCHHHH
Q psy9711          29 AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV---IIYNN-TFVTNIDISVDTL  104 (198)
Q Consensus        29 ~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi---~lYn~-P~~tg~~l~~~~l  104 (198)
                      .|.....-+-..+..+.|.+.|+|.+-+.-+.-...+  -++.+++    +...++-+   +-|-. |     ..+++.+
T Consensus        88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n--~~~~v~~----ak~~G~~v~~~i~~t~~p-----~~~~~~~  156 (448)
T PRK12331         88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRN--LETAVKA----TKKAGGHAQVAISYTTSP-----VHTIDYF  156 (448)
T ss_pred             cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHH--HHHHHHH----HHHcCCeEEEEEEeecCC-----CCCHHHH
Confidence            3444332333456678888999999888765432222  2233332    23334332   12222 2     2344544


Q ss_pred             HH----HHcC-CCEEEEeeC----CHHHHHHHHhh---cCCCCeEEEecChh------hHHHHhhcCCCeEEecc-----
Q psy9711         105 VK----LAHH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAGSAG------YLLSGLLVGCAGGINAL-----  161 (198)
Q Consensus       105 ~~----L~~~-p~i~giK~s----d~~~~~~~~~~---~~~~~~~v~~G~d~------~~~~~l~~G~~G~is~~-----  161 (198)
                      .+    +.+. ...+.+||+    ++.++.++++.   ..+-.+.+ -+++.      ..+.++.+|++.+=+++     
T Consensus       157 ~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~-H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~  235 (448)
T PRK12331        157 VKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV-HTHATSGIAEMTYLKAIEAGADIIDTAISPFAG  235 (448)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE-EecCCCCcHHHHHHHHHHcCCCEEEeeccccCC
Confidence            44    4444 589999999    67666665532   22223333 23321      34567889976443333     


Q ss_pred             --cccchHHHHHHHHHH--HcC-CHHHHHHHHHHhhch
Q psy9711         162 --SAVLGGPICELYDLA--KAG-KWEEAMKLQHRLVKP  194 (198)
Q Consensus       162 --~n~~P~~~~~l~~~~--~~g-d~~~A~~l~~~~~~l  194 (198)
                        +|..-+.++...+..  ..| |.+...++.+.+.++
T Consensus       236 gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~  273 (448)
T PRK12331        236 GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPI  273 (448)
T ss_pred             CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence              333334444444432  112 445555554444443

>PRK06852 aldolase; Validated

Probab=88.90  E-value=2.5  Score=35.44  Aligned_cols=64  Identities=6%  Similarity=0.054  Sum_probs=48.9

Q ss_pred             HHHHHHHHhc-CCeE-EEeCCCCcHHHHHHHHHHHHh-cCCCEEEEcCCCCcCCCCCH--HHHHHHHHHHH
Q psy9711          14 KIISTLRQET-KKTI-IAGTYCESTRATIDLTQKAAK-AGANAALILCPYYFQKKMTE--DLIYEHFISVA   79 (198)
Q Consensus        14 ~l~~~~~~~~-~~pv-i~gv~~~~~~~~i~~a~~a~~-~Gad~v~~~~P~y~~~~~~~--~~i~~y~~~i~   79 (198)
                      +-++.+++.+ ++|| ++|=...+.++.+++++.+.+ .|+.++.+---.|..++  +  ..+.+-...|.
T Consensus       219 e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~--p~~~~~~~Ai~~IV  287 (304)
T PRK06852        219 ELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL--DEAVRMCNAIYAIT  287 (304)
T ss_pred             HHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC--chHHHHHHHHHHHH
Confidence            3445566777 8996 556655578899999999988 99999999998898876  6  66666665554

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=88.89  E-value=6  Score=33.67  Aligned_cols=72  Identities=7%  Similarity=-0.030  Sum_probs=51.3

Q ss_pred             HHHHHHHHhcCCeEEEe---CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711          14 KIISTLRQETKKTIIAG---TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII   88 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~g---v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l   88 (198)
                      +.++.+.+. +..|.+.   ++..+.++.+++++.+.+.|++.+.+.-.. ...  +|+++.++++.+-+..  ++||-+
T Consensus       119 ~~i~~ak~~-G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~-G~~--~P~~v~~~v~~l~~~l~~~i~ig~  194 (337)
T PRK08195        119 QHIGLAREL-GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA-GAL--LPEDVRDRVRALRAALKPDTQVGF  194 (337)
T ss_pred             HHHHHHHHC-CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC-CCC--CHHHHHHHHHHHHHhcCCCCeEEE
Confidence            344444443 4444332   345567888999999999999988776554 333  4999999999999887  588877


Q ss_pred             E
Q psy9711          89 Y   89 (198)
Q Consensus        89 Y   89 (198)
                      |
T Consensus       195 H  195 (337)
T PRK08195        195 H  195 (337)
T ss_pred             E
Confidence            6

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=88.87  E-value=14  Score=31.63  Aligned_cols=97  Identities=18%  Similarity=0.134  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEeCCCCcHH-H-HHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHHHHHHHHHHHHcc
Q psy9711          10 EEKLKIISTLRQET-KKTIIAGTYCESTR-A-TIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADN   81 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~-~-~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~~i~~y~~~i~~~   81 (198)
                      +|..+-++.+.+.+ ..|+++.++..... - .-+..+..+.+++|++-+-.+.-   ..|.  .+.+.+.+..+.|.+.
T Consensus       105 ~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~  184 (352)
T PRK05437        105 PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA  184 (352)
T ss_pred             hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh
Confidence            44888888888888 99999987775541 1 11122233445778777653221   1111  1245577889999998


Q ss_pred             CCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          82 SPIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      +++||++=-.    |..++.+....|.+.
T Consensus       185 ~~vPVivK~~----g~g~s~~~a~~l~~~  209 (352)
T PRK05437        185 LPVPVIVKEV----GFGISKETAKRLADA  209 (352)
T ss_pred             hCCCEEEEeC----CCCCcHHHHHHHHHc
Confidence            8999998653    345778888888753

>TIGR02317 prpB methylisocitrate lyase

Probab=88.74  E-value=8.7  Score=31.97  Aligned_cols=157  Identities=9%  Similarity=0.000  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCC-------c-CCCCCHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYY-------F-QKKMTEDLIYEHF   75 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y-------~-~~~~~~~~i~~y~   75 (198)
                      .+|.+|..+.++.+.+.+++||++=+  |-.+..++.+.++...++|+.++.+---.+       . +.-.+.++..+-.
T Consensus        55 ~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI  134 (285)
T TIGR02317        55 ITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKI  134 (285)
T ss_pred             CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHH
Confidence            58999999999999887799999953  434588899999999999999999965322       1 1102478888888


Q ss_pred             HHHHccC-CCCEEEEeC-CCCcccccCHHHHHHHHc---C-CCEEEEeeC-CHHHHHHHHhhcCCCCe--EEEecCh-h-
Q psy9711          76 ISVADNS-PIPVIIYNN-TFVTNIDISVDTLVKLAH---H-ENIRGVKDT-DNIKLANMANQTKDLNF--SVFAGSA-G-  144 (198)
Q Consensus        76 ~~i~~~~-~~pi~lYn~-P~~tg~~l~~~~l~~L~~---~-p~i~giK~s-d~~~~~~~~~~~~~~~~--~v~~G~d-~-  144 (198)
                      +...++. +.+++|==- -......+ .+.+.|...   - -..+.+--. +...+.++.+ ..+..+  .+..+.. . 
T Consensus       135 ~Aa~~a~~~~d~~IiARTDa~~~~g~-deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~-~i~~Pl~~n~~~~~~~p~  212 (285)
T TIGR02317       135 AAAVDAKRDEDFVIIARTDARAVEGL-DAAIERAKAYVEAGADMIFPEALTSLEEFRQFAK-AVKVPLLANMTEFGKTPL  212 (285)
T ss_pred             HHHHHhccCCCEEEEEEcCcccccCH-HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-hcCCCEEEEeccCCCCCC
Confidence            8888766 455665311 11111122 356776652   1 133333222 5666666653 233334  3343321 1 


Q ss_pred             -hHHHHhhcCCCeEEeccccc
Q psy9711         145 -YLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       145 -~~~~~l~~G~~G~is~~~n~  164 (198)
                       ..-..-.+|.+=++-+...+
T Consensus       213 ~s~~eL~~lGv~~v~~~~~~~  233 (285)
T TIGR02317       213 FTADELREAGYKMVIYPVTAF  233 (285)
T ss_pred             CCHHHHHHcCCcEEEEchHHH
Confidence             23345568888666665433

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=88.74  E-value=5  Score=33.41  Aligned_cols=96  Identities=11%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCC------------CcHHHHHHHHHHHHhcCCCEEEEcCCC----C
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYC------------ESTRATIDLTQKAAKAGANAALILCPY----Y   61 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~------------~~~~~~i~~a~~a~~~Gad~v~~~~P~----y   61 (198)
                      +..|+.+|-.+..+.+++.+   +++|=   -.+++            ++.+++.+   ++++.|+|.+.+.--.    |
T Consensus       108 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~---Fv~~TgvD~LAvaiGt~HG~Y  184 (286)
T PRK08610        108 ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQE---LVEKTGIDALAPALGSVHGPY  184 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHH---HHHHHCCCEEEeecccccccc
Confidence            45789999999999999998   66652   22321            23344444   4457799988877411    2


Q ss_pred             c-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          62 F-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        62 ~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      - .|..+    ++-.++|.+++++|++++=     |..++.+.+.+..+..
T Consensus       185 ~~~p~Ld----~~~L~~I~~~~~vPLVLHG-----gSG~~~e~~~~ai~~G  226 (286)
T PRK08610        185 KGEPKLG----FKEMEEIGLSTGLPLVLHG-----GTGIPTKDIQKAIPFG  226 (286)
T ss_pred             CCCCCCC----HHHHHHHHHHHCCCEEEeC-----CCCCCHHHHHHHHHCC
Confidence            1 12211    4556677778899999854     4557888888887543

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=88.65  E-value=3.1  Score=33.98  Aligned_cols=61  Identities=11%  Similarity=0.115  Sum_probs=45.1

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ..++..++..++||+++.|=.+..|    +..|.++|+|+|++..-..-..+  +.++.+-|+.-.+
T Consensus       179 ~~l~~i~e~~~vpVivdAGIgt~sD----a~~AmElGaDgVL~nSaIakA~d--P~~mA~a~~~AV~  239 (267)
T CHL00162        179 LNLQIIIENAKIPVIIDAGIGTPSE----ASQAMELGASGVLLNTAVAQAKN--PEQMAKAMKLAVQ  239 (267)
T ss_pred             HHHHHHHHcCCCcEEEeCCcCCHHH----HHHHHHcCCCEEeecceeecCCC--HHHHHHHHHHHHH
Confidence            3566777766899999877655555    45678999999999988775554  8888877765443

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=88.65  E-value=3.4  Score=30.99  Aligned_cols=74  Identities=15%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             HHHHHHhcCCeEEEeCCCCcHHHHHH-HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCC
Q psy9711          16 ISTLRQETKKTIIAGTYCESTRATID-LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTF   93 (198)
Q Consensus        16 ~~~~~~~~~~pvi~gv~~~~~~~~i~-~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~   93 (198)
                      ++...+..++|+++++...+..+.+. .++.+.++|+|++.+.....+.    ++...++.+.+.+.. ++|+++.-.+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~~~~~v~~~~~~~  124 (200)
T cd04722          49 LKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL----AREDLELIRELREAVPDVKVVVKLSPT  124 (200)
T ss_pred             HHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            34444433889999988777666553 3688899999999887544221    566777888888776 78988876653

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=88.53  E-value=5.9  Score=33.01  Aligned_cols=101  Identities=9%  Similarity=0.133  Sum_probs=0.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCcHH-----------HHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCESTR-----------ATIDLTQKAAKAGANAALILCPY---YFQ   63 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~~~-----------~~i~~a~~a~~~Gad~v~~~~P~---y~~   63 (198)
                      +..|+.+|-.+..+.+++.+   ++.|   +-.+++....           +.-+-.+++++.|+|.+.+.--.   .++
T Consensus       108 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~  187 (288)
T TIGR00167       108 GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYK  187 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccC


Q ss_pred             CCCCHH-HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          64 KKMTED-LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        64 ~~~~~~-~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..  +. ==++-.++|.+.+++|+++     ..|..++.+.+.+..++.
T Consensus       188 ~~--p~~Ld~~~L~~I~~~v~vPLVl-----HGgSG~~~e~~~~ai~~G  229 (288)
T TIGR00167       188 GE--PKGLDFERLEEIQKYVNLPLVL-----HGGSGIPDEEIKKAISLG  229 (288)
T ss_pred             CC--CCccCHHHHHHHHHHhCCCEEE-----eCCCCCCHHHHHHHHHcC

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PRK04302 triosephosphate isomerase; Provisional

Probab=88.38  E-value=3.1  Score=33.08  Aligned_cols=63  Identities=14%  Similarity=0.201  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      -+++.-.++++.+.+.. ++||++|-|= ++.+.++.   +.+.|+|++++..-..-..+  ...+.+-|
T Consensus       155 ~~~~~i~~~~~~ir~~~~~~pvi~GggI-~~~e~~~~---~~~~gadGvlVGsa~l~~~~--~~~~~~~~  218 (223)
T PRK04302        155 AKPEVVEDAVEAVKKVNPDVKVLCGAGI-STGEDVKA---ALELGADGVLLASGVVKAKD--PEAALRDL  218 (223)
T ss_pred             CCHHHHHHHHHHHHhccCCCEEEEECCC-CCHHHHHH---HHcCCCCEEEEehHHhCCcC--HHHHHHHH
Confidence            34666677777787766 8999998654 45544444   45789999999877765554  66555544

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=88.36  E-value=2.6  Score=34.06  Aligned_cols=153  Identities=10%  Similarity=0.012  Sum_probs=92.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeC--C-CCcHHHHHHHHHHHHhcCCCEEEEcCCC--Cc-CCCCCHHHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGT--Y-CESTRATIDLTQKAAKAGANAALILCPY--YF-QKKMTEDLIYEHFISV   78 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~-~~~~~~~i~~a~~a~~~Gad~v~~~~P~--y~-~~~~~~~~i~~y~~~i   78 (198)
                      -.||.+|..+.++.+++.+.+||++=.  | +++..++.+.++...++|+.++.+---.  +. +.-.+.++..+-.+..
T Consensus        50 ~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa  129 (238)
T PF13714_consen   50 GLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAA  129 (238)
T ss_dssp             S-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHH
Confidence            468999999999999988899999953  4 3348899999999999999999997651  11 1113588999999998


Q ss_pred             HccC-CCCEEEEeCCCCccccc-----CHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecChhh-H
Q psy9711          79 ADNS-PIPVIIYNNTFVTNIDI-----SVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSAGY-L  146 (198)
Q Consensus        79 ~~~~-~~pi~lYn~P~~tg~~l-----~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d~~-~  146 (198)
                      .++. +..++| |-  ||-.-+     -.+.++|...  --..-++=-.   +.+.+.++.+.. +-.+.+..+.+.. .
T Consensus       130 ~~a~~~~~~~I-~A--RTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-~~Pl~v~~~~~~~~~  205 (238)
T PF13714_consen  130 VDARRDPDFVI-IA--RTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV-DGPLNVNPGPGTLSA  205 (238)
T ss_dssp             HHHHSSTTSEE-EE--EECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH-SSEEEEETTSSSS-H
T ss_pred             HHhccCCeEEE-EE--eccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-CCCEEEEcCCCCCCH
Confidence            8766 345333 22  443322     1355666652  1222222222   555666666433 3446666643332 3


Q ss_pred             HHHhhcCCCeEEecc
Q psy9711         147 LSGLLVGCAGGINAL  161 (198)
Q Consensus       147 ~~~l~~G~~G~is~~  161 (198)
                      -..-.+|..-++-+.
T Consensus       206 ~eL~~lGv~~v~~~~  220 (238)
T PF13714_consen  206 EELAELGVKRVSYGN  220 (238)
T ss_dssp             HHHHHTTESEEEETS
T ss_pred             HHHHHCCCcEEEEcH
Confidence            344568877665554

...

>smart00518 AP2Ec AP endonuclease family 2

Probab=88.36  E-value=12  Score=30.25  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=66.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeC------CCCcH-------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH---H
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGT------YCEST-------RATIDLTQKAAKAGANAALILCPYYFQKKMTE---D   69 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv------~~~~~-------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~---~   69 (198)
                      .+|.++..++-+...+. ++++.++.      .+.+.       +...+.++.|+++|++.+.+.+.++.... .+   +
T Consensus        41 ~~~~~~~~~l~~~~~~~-gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~-~e~~~~  118 (273)
T smart00518       41 RLSEETAEKFKEALKEN-NIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQS-KEEALN  118 (273)
T ss_pred             CCCHHHHHHHHHHHHHc-CCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCC-HHHHHH
Confidence            47777777777766554 56655532      12111       12344567788999998888776653222 12   3


Q ss_pred             HHHHHHHHHHcc-CCCCEEEEeCCCCc-ccccCHHHHHHHHc-C---CCEEEEeeC
Q psy9711          70 LIYEHFISVADN-SPIPVIIYNNTFVT-NIDISVDTLVKLAH-H---ENIRGVKDT  119 (198)
Q Consensus        70 ~i~~y~~~i~~~-~~~pi~lYn~P~~t-g~~l~~~~l~~L~~-~---p~i~giK~s  119 (198)
                      .+.+.++++++. .++.+.+=|.|... ...-+++.+.++.+ +   ||+--+=|.
T Consensus       119 ~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~lD~  174 (273)
T smart00518      119 RIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDT  174 (273)
T ss_pred             HHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEEEc
Confidence            445577777764 36888888876432 22236777888773 3   565554444

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=88.35  E-value=12  Score=30.04  Aligned_cols=151  Identities=12%  Similarity=0.004  Sum_probs=83.1

Q ss_pred             CHHHHHHHHHHHHHhc--CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.+.-.+.++..+++.  +.| +++|+|+--+.+   +++.|.++|++.++  +|.+      ..++.++-+    ..++
T Consensus        49 ~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e---~a~~a~~aGA~FiV--sP~~------~~~v~~~~~----~~~i  113 (222)
T PRK07114         49 RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAA---TAALYIQLGANFIV--TPLF------NPDIAKVCN----RRKV  113 (222)
T ss_pred             CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHHHH----HcCC
Confidence            3334445555555433  334 788988766554   45668889999665  4543      556666644    4455


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEE--ecCh---hhHHHHhhcCC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVF--AGSA---GYLLSGLLVGC  154 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~--~G~d---~~~~~~l~~G~  154 (198)
                      |++    |   |. +||..+.+-.+. +...+|.=     .+..+..+. .- -|+..++  .|-+   +.+...+..|+
T Consensus       114 ~~i----P---G~-~TpsEi~~A~~~-Ga~~vKlFPA~~~G~~~ikal~-~p-~p~i~~~ptGGV~~~~~n~~~yl~aGa  182 (222)
T PRK07114        114 PYS----P---GC-GSLSEIGYAEEL-GCEIVKLFPGSVYGPGFVKAIK-GP-MPWTKIMPTGGVEPTEENLKKWFGAGV  182 (222)
T ss_pred             CEe----C---CC-CCHHHHHHHHHC-CCCEEEECcccccCHHHHHHHh-cc-CCCCeEEeCCCCCcchhcHHHHHhCCC
Confidence            553    3   43 455555444432 23446664     445555543 22 2445444  4554   36778888997


Q ss_pred             CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      .++-.| ++++|...      ..++||++..+..+.+
T Consensus       183 ~avg~G-s~L~~~~~------~~~~~~~~i~~~a~~~  212 (222)
T PRK07114        183 TCVGMG-SKLIPKEA------LAAKDYAGIEQKVREA  212 (222)
T ss_pred             EEEEEC-hhhcCccc------cccccHHHHHHHHHHH
Confidence            766544 45565322      4556666655544443

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=88.29  E-value=14  Score=31.03  Aligned_cols=145  Identities=11%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCC-----CcC---CCCCHHHHHHHHHHHHccCC--CCEEEEeC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPY-----YFQ---KKMTEDLIYEHFISVADNSP--IPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~-----y~~---~~~~~~~i~~y~~~i~~~~~--~pi~lYn~   91 (198)
                      ..|+++++.+++.++..+.++.+++.|+|++=+-  .|.     +..   .-.+++-+.+-.+++-++++  +||.+=-.
T Consensus        62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR  141 (312)
T PRK10550         62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR  141 (312)
T ss_pred             CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence            6899999999999999999999999999999876  343     111   00247788888899888874  89998664


Q ss_pred             CCCcccccCHHHHHHHHcCCCEEEEee---------C----CHHHHHHHHhhcCCCCeEE-EecChh---hHHHHh-hcC
Q psy9711          92 TFVTNIDISVDTLVKLAHHENIRGVKD---------T----DNIKLANMANQTKDLNFSV-FAGSAG---YLLSGL-LVG  153 (198)
Q Consensus        92 P~~tg~~l~~~~l~~L~~~p~i~giK~---------s----d~~~~~~~~~~~~~~~~~v-~~G~d~---~~~~~l-~~G  153 (198)
                      ++....+...+....|.+. ++..+-.         +    |+..+.++. +..  ++.| .+|.=.   .....+ ..|
T Consensus       142 ~g~~~~~~~~~~a~~l~~~-Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik-~~~--~iPVi~nGdI~t~~da~~~l~~~g  217 (312)
T PRK10550        142 LGWDSGERKFEIADAVQQA-GATELVVHGRTKEDGYRAEHINWQAIGEIR-QRL--TIPVIANGEIWDWQSAQQCMAITG  217 (312)
T ss_pred             CCCCCchHHHHHHHHHHhc-CCCEEEECCCCCccCCCCCcccHHHHHHHH-hhc--CCcEEEeCCcCCHHHHHHHHhccC
Confidence            4322112222333333332 1222211         1    344455554 222  3444 344211   233334 368


Q ss_pred             CCeEEeccccc-chHHHHHH
Q psy9711         154 CAGGINALSAV-LGGPICEL  172 (198)
Q Consensus       154 ~~G~is~~~n~-~P~~~~~l  172 (198)
                      +||++-|-+.+ -|.++.++
T Consensus       218 ~DgVmiGRg~l~nP~lf~~~  237 (312)
T PRK10550        218 CDAVMIGRGALNIPNLSRVV  237 (312)
T ss_pred             CCEEEEcHHhHhCcHHHHHh
Confidence            99999887754 37666554

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=88.24  E-value=11  Score=31.75  Aligned_cols=44  Identities=18%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhcCCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711          12 KLKIISTLRQETKKTIIAG-TYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      ..+.++.+++..++||++= ++..   .+.+.++.++++|+|++.+..
T Consensus       166 ~~~~i~~l~~~~~vPVivK~~g~g---~s~~~a~~l~~~Gvd~I~vsG  210 (326)
T cd02811         166 WLERIEELVKALSVPVIVKEVGFG---ISRETAKRLADAGVKAIDVAG  210 (326)
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCC---CCHHHHHHHHHcCCCEEEECC
Confidence            4467777777669999983 3332   225777888899999999975

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=88.08  E-value=8.7  Score=32.57  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHHHHHHHHHHHHcc
Q psy9711          10 EEKLKIISTLRQET-KKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADN   81 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~~i~~y~~~i~~~   81 (198)
                      .|..+-.+.+.+.. ..|+++.++.....+  .-+..+..+.+++|++-+--+..   ..|.  .+-+.+.+..+.|.+.
T Consensus        98 ~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~  177 (333)
T TIGR02151        98 PETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ  177 (333)
T ss_pred             hhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh
Confidence            33443337777766 999999877644422  22233333444677777653221   1111  1245567889999999


Q ss_pred             CCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          82 SPIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +++||++=-.    |..++.+...+|.+
T Consensus       178 ~~vPVivK~~----g~g~~~~~a~~L~~  201 (333)
T TIGR02151       178 LSVPVIVKEV----GFGISKEVAKLLAD  201 (333)
T ss_pred             cCCCEEEEec----CCCCCHHHHHHHHH
Confidence            9999998653    33468888888865

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=88.04  E-value=6.4  Score=32.61  Aligned_cols=101  Identities=10%  Similarity=0.124  Sum_probs=61.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCCCc---------HHHHHHHHHHHHhcCCCEEEEcCCC---CcCC-
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYCES---------TRATIDLTQKAAKAGANAALILCPY---YFQK-   64 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~~~---------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~~-   64 (198)
                      +..|+.+|-.+..+.+++.+   ++.|=   -.+++..         ..+.-+-.+++++.|+|.+.+.--.   .++. 
T Consensus       100 ~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~  179 (276)
T cd00947         100 GSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGG  179 (276)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCC
Confidence            46789999999999999988   55552   2232211         0112223344556799988876422   1111 


Q ss_pred             CCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          65 KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        65 ~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                      .  +.==++-.++|.+.+++|++++=     |..++.+.+.+..+..
T Consensus       180 ~--p~L~~~~L~~i~~~~~vPLVlHG-----gSG~~~e~~~~ai~~G  219 (276)
T cd00947         180 E--PKLDFDRLKEIAERVNVPLVLHG-----GSGIPDEQIRKAIKLG  219 (276)
T ss_pred             C--CccCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence            1  22123456777777789999853     4567888888887543

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=87.99  E-value=14  Score=30.72  Aligned_cols=92  Identities=15%  Similarity=0.201  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          13 LKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        13 ~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      .+.++.+++.. ++++.+=+ +..+.+++++.++..++.|++.+  --|+-  +.  +   .+.++++.+++++||..-.
T Consensus       165 ~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i--EeP~~--~~--d---~~~~~~L~~~~~ipIa~~E  235 (316)
T cd03319         165 IERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELI--EQPVP--AG--D---DDGLAYLRDKSPLPIMADE  235 (316)
T ss_pred             HHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE--ECCCC--CC--C---HHHHHHHHhcCCCCEEEeC
Confidence            34444444443 34444422 33345555555555555544322  23331  11  1   1234445555556655421


Q ss_pred             CCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          91 NTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        91 ~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                            .-.+++.+.++.+  .-.++-+|-+
T Consensus       236 ------~~~~~~~~~~~~~~~~~d~v~~~~~  260 (316)
T cd03319         236 ------SCFSAADAARLAGGGAYDGINIKLM  260 (316)
T ss_pred             ------CCCCHHHHHHHHhcCCCCEEEEecc
Confidence                  1234455555553  2345555544

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=87.87  E-value=2.8  Score=34.70  Aligned_cols=63  Identities=6%  Similarity=0.090  Sum_probs=45.3

Q ss_pred             HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711          14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      ++++.+++..++||+ ...|+-.+.+-+.   .+.+.||+++++..-.+...+  +....+.|......
T Consensus       184 elLk~l~~~~~iPVV~iAeGGI~Tpena~---~v~e~GAdgVaVGSAI~~a~d--P~~~tk~f~~ai~~  247 (283)
T cd04727         184 ELVKETAKLGRLPVVNFAAGGVATPADAA---LMMQLGADGVFVGSGIFKSEN--PEKRARAIVEAVTH  247 (283)
T ss_pred             HHHHHHHHhcCCCeEEEEeCCCCCHHHHH---HHHHcCCCEEEEcHHhhcCCC--HHHHHHHHHHHHHh
Confidence            567777776689997 5777764444333   334689999999988876665  88888888777654

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional

Probab=87.86  E-value=16  Score=31.18  Aligned_cols=145  Identities=11%  Similarity=0.136  Sum_probs=81.3

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCC-----------------CCHHHHHHH----HHH
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKK-----------------MTEDLIYEH----FIS   77 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~-----------------~~~~~i~~y----~~~   77 (198)
                      |.-||+| ++-.+.+.+++.|+..++++..    -++++--||.||-                 ..-++=+..    ..+
T Consensus        52 rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~GL~~~R~ll~~  131 (348)
T PRK12756         52 RLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQ  131 (348)
T ss_pred             ceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            7788888 7778899999999999988754    4556666777772                 111122223    333


Q ss_pred             HHccCCCCEEE--Ee---------------CCCCcccccCHHHHHHHH-cCCCEEEEeeC---CHHHH-HHHHhhcCCCC
Q psy9711          78 VADNSPIPVII--YN---------------NTFVTNIDISVDTLVKLA-HHENIRGVKDT---DNIKL-ANMANQTKDLN  135 (198)
Q Consensus        78 i~~~~~~pi~l--Yn---------------~P~~tg~~l~~~~l~~L~-~~p~i~giK~s---d~~~~-~~~~~~~~~~~  135 (198)
                      | ...++|+.-  -|               ++.+   ........+++ ...--||+|.+   ++.-. -.+. ....+.
T Consensus       132 i-~~~GlP~atE~ld~~~~qY~~DliSwgaIGAR---t~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~-aa~~~H  206 (348)
T PRK12756        132 I-NELGLPTATEFLDMVTGQYIADLISWGAIGAR---TTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIR-AARASH  206 (348)
T ss_pred             H-HHcCCceeehhcccccHHHHHHHHhhhhhccc---cccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHH-HHhCCC
Confidence            3 456788762  11               1222   12334567777 58889999999   44332 2333 233333


Q ss_pred             eEEEecChhhH----------HHHhhcCCCeEEecccccchHHHHHHHHHHHc
Q psy9711         136 FSVFAGSAGYL----------LSGLLVGCAGGINALSAVLGGPICELYDLAKA  178 (198)
Q Consensus       136 ~~v~~G~d~~~----------~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~  178 (198)
                      --+..+.++..          ......|+.     ..|+.++-+.+..+.+++
T Consensus       207 ~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~-----~PNY~~~~v~~a~~~l~~  254 (348)
T PRK12756        207 MFLSPDKDGQMTIYQTSGNPYGHIIMRGGK-----KPNYHAEDIAAACDTLRE  254 (348)
T ss_pred             eeEeeCCCCcEEEEEcCCCCCeEEEeeCCC-----CCCCCHHHHHHHHHHHHH
Confidence            22222222211          111233432     268888777777666654

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=87.77  E-value=3.7  Score=34.41  Aligned_cols=62  Identities=21%  Similarity=0.094  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      ++.++.++++|+|.+.+...--.... .+..-.....++.+.+++||+.      .|---+.+.+.+..
T Consensus       119 ~~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~~~~ll~~v~~~~~iPvia------aGGI~~~~~~~~al  180 (307)
T TIGR03151       119 VALAKRMEKAGADAVIAEGMESGGHI-GELTTMALVPQVVDAVSIPVIA------AGGIADGRGMAAAF  180 (307)
T ss_pred             HHHHHHHHHcCCCEEEEECcccCCCC-CCCcHHHHHHHHHHHhCCCEEE------ECCCCCHHHHHHHH
Confidence            46678899999999999765211110 0112367777888888999886      33334555554444

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=87.66  E-value=3.5  Score=32.72  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=8.1

Q ss_pred             HHHHHHHHhcCCCEEEEc
Q psy9711          40 IDLTQKAAKAGANAALIL   57 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~   57 (198)
                      .+.++.+++.|++.+++.
T Consensus       149 ~e~~~~~~~~g~~~ii~~  166 (233)
T PRK00748        149 EDLAKRFEDAGVKAIIYT  166 (233)
T ss_pred             HHHHHHHHhcCCCEEEEe
Confidence            344444444444444443

>COG4018 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.66  E-value=5.4  Score=33.93  Aligned_cols=85  Identities=18%  Similarity=0.095  Sum_probs=69.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +|.+.-..+|-+++++.+.+.. ++.-|.+|++ ..++.+.-.+.+.+.++|..++-.-.|...   .+.+-+|-++|+.
T Consensus       198 aE~HAAPLeEmk~VaEtArk~GkGveaI~hvgD-GyDdli~G~kA~ve~~vDvfvvEGgPFNrA---~dRL~AFa~Avaa  273 (505)
T COG4018         198 AEAHAAPLEEMKRVAETARKSGKGVEAILHVGD-GYDDLIDGLKAAVEEVVDVFVVEGGPFNRA---EDRLSAFARAVAA  273 (505)
T ss_pred             cccccCCHHHHHHHHHHHHHhCCCceeEEEecC-CcHHHHHHHHHHHHhcCcEEEEcCCCcchh---hHHHHHHHHHHHh
Confidence            4667778899999999999998 8999999997 799999999999999999988886666654   6778888888875


Q ss_pred             cC---CCCEEEEe
Q psy9711          81 NS---PIPVIIYN   90 (198)
Q Consensus        81 ~~---~~pi~lYn   90 (198)
                      +-   +-.|+.-|
T Consensus       274 ~Ril~pGkvVaTN  286 (505)
T COG4018         274 CRILAPGKVVATN  286 (505)
T ss_pred             heeccCCcEEeec
Confidence            32   55676655

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=87.61  E-value=1.6  Score=34.82  Aligned_cols=71  Identities=11%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             EEEeCC-CCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711          27 IIAGTY-CESTRATIDLTQKAAKAGANAALILCPYYF--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT  103 (198)
Q Consensus        27 vi~gv~-~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~  103 (198)
                      .++|++ ..+.+++    ..|.+.|+|.+.+.| .|.  ++. +...-.+.++.+++.+++||+--     .|  ++++.
T Consensus       111 ~iiG~s~~~s~~~a----~~A~~~gaDYv~~Gp-v~t~tK~~-~~p~gl~~l~~~~~~~~iPvvAI-----GG--I~~~n  177 (221)
T PRK06512        111 MIVGFGNLRDRHGA----MEIGELRPDYLFFGK-LGADNKPE-AHPRNLSLAEWWAEMIEIPCIVQ-----AG--SDLAS  177 (221)
T ss_pred             CEEEecCCCCHHHH----HHhhhcCCCEEEECC-CCCCCCCC-CCCCChHHHHHHHHhCCCCEEEE-----eC--CCHHH
Confidence            356765 3344443    346788999998875 441  111 11122345566777778998762     23  67888


Q ss_pred             HHHHHcC
Q psy9711         104 LVKLAHH  110 (198)
Q Consensus       104 l~~L~~~  110 (198)
                      +.++.+.
T Consensus       178 ~~~~~~~  184 (221)
T PRK06512        178 AVEVAET  184 (221)
T ss_pred             HHHHHHh
Confidence            8888753

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=87.45  E-value=16  Score=30.80  Aligned_cols=98  Identities=17%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEeCCCCcHH--HHHHHHHHHHhcCCCEEEEcCCC---CcCCC--CCHHHHHHHHHHHHc
Q psy9711           9 EEEKLKIISTLRQET-KKTIIAGTYCESTR--ATIDLTQKAAKAGANAALILCPY---YFQKK--MTEDLIYEHFISVAD   80 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~--~~i~~a~~a~~~Gad~v~~~~P~---y~~~~--~~~~~i~~y~~~i~~   80 (198)
                      ..|+.+-++.+.+.. ..|+++.++.....  +.-+..+..+.+++|++-+-...   ...+.  .+.+.+.+-.+.+.+
T Consensus        96 ~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~  175 (326)
T cd02811          96 DPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVK  175 (326)
T ss_pred             ChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            345667778887777 79999988765421  12222233334577877765321   11111  124456678889998


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      .+++||++=-.    |...+.+...+|.+.
T Consensus       176 ~~~vPVivK~~----g~g~s~~~a~~l~~~  201 (326)
T cd02811         176 ALSVPVIVKEV----GFGISRETAKRLADA  201 (326)
T ss_pred             hcCCCEEEEec----CCCCCHHHHHHHHHc
Confidence            88999998653    335778888888753

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK12928 lipoyl synthase; Provisional

Probab=87.42  E-value=8.7  Score=31.98  Aligned_cols=50  Identities=14%  Similarity=0.246  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711           7 STEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      .|.+++.++++.+.+..     +.-+|+|. +.+-++.++..+.+.++|+|.+-+.
T Consensus       185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~  239 (290)
T PRK12928        185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIG  239 (290)
T ss_pred             CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEE
Confidence            46777777777777753     44567777 5677777788888888887777664

>PLN02591 tryptophan synthase

Probab=87.42  E-value=14  Score=30.17  Aligned_cols=65  Identities=18%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccCCCCEE--EE
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPVI--IY   89 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~~~pi~--lY   89 (198)
                      ++-.|.++.+.+++.++...+.|||.+=+.-|+-.+..                .+-+++++..+++.+..+.|++  -|
T Consensus         7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y   86 (250)
T PLN02591          7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY   86 (250)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence            34568889999999999999999999999998854422                2334566666666656677844  45


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      -||
T Consensus        87 ~N~   89 (250)
T PLN02591         87 YNP   89 (250)
T ss_pred             ccH
Confidence            555

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=87.41  E-value=19  Score=32.28  Aligned_cols=112  Identities=13%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711          38 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV  116 (198)
Q Consensus        38 ~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi  116 (198)
                      +..+.++...++|+|.+.+-.+.   ..  .+.+.+..+.+.... ++||++       |.-.+.+...+|.+. .+.+|
T Consensus       228 ~~~e~a~~L~~agvdvivvD~a~---g~--~~~vl~~i~~i~~~~p~~~vi~-------g~v~t~e~a~~l~~a-Gad~i  294 (486)
T PRK05567        228 DNEERAEALVEAGVDVLVVDTAH---GH--SEGVLDRVREIKAKYPDVQIIA-------GNVATAEAARALIEA-GADAV  294 (486)
T ss_pred             chHHHHHHHHHhCCCEEEEECCC---Cc--chhHHHHHHHHHhhCCCCCEEE-------eccCCHHHHHHHHHc-CCCEE
Confidence            56889999999999977665543   21  456778888888777 799988       556889999999864 22233


Q ss_pred             eeC------------------CHHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccc
Q psy9711         117 KDT------------------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       117 K~s------------------d~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~  162 (198)
                      |.+                  ++.-+.+..+.....++.|+.  |.-  .....++.+|++.++.|..
T Consensus       295 ~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~  362 (486)
T PRK05567        295 KVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSM  362 (486)
T ss_pred             EECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcc
Confidence            221                  112222223211223466665  432  3578899999999987765

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=87.36  E-value=7.7  Score=30.79  Aligned_cols=83  Identities=11%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEEeC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNN   91 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lYn~   91 (198)
                      .++++.+.+. ++|++.|+.+.  .|    +..|.+.|+|.+-+-|     .+  .-+ .+|.+.+..-.+ +|++-   
T Consensus        99 ~~v~~~~~~~-~i~~iPG~~T~--~E----~~~A~~~Gad~vklFP-----a~--~~G-~~~ik~l~~~~p~ip~~a---  160 (213)
T PRK06552         99 RETAKICNLY-QIPYLPGCMTV--TE----IVTALEAGSEIVKLFP-----GS--TLG-PSFIKAIKGPLPQVNVMV---  160 (213)
T ss_pred             HHHHHHHHHc-CCCEECCcCCH--HH----HHHHHHcCCCEEEECC-----cc--cCC-HHHHHHHhhhCCCCEEEE---
Confidence            3455555444 89999988753  33    3455678999999733     11  112 467777776664 77663   


Q ss_pred             CCCcccccCHHHHHHHHcCC-CEEEEe
Q psy9711          92 TFVTNIDISVDTLVKLAHHE-NIRGVK  117 (198)
Q Consensus        92 P~~tg~~l~~~~l~~L~~~p-~i~giK  117 (198)
                         +| .++.+.+.+..+.+ +.+++=
T Consensus       161 ---tG-GI~~~N~~~~l~aGa~~vavg  183 (213)
T PRK06552        161 ---TG-GVNLDNVKDWFAAGADAVGIG  183 (213)
T ss_pred             ---EC-CCCHHHHHHHHHCCCcEEEEc
Confidence               33 35677888887765 555543

>PTZ00413 lipoate synthase; Provisional

Probab=87.33  E-value=7  Score=33.94  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHHh-c-C----CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711           7 STEEEKLKIISTLRQE-T-K----KTIIAGTYCESTRATIDLTQKAAKAGANAALI   56 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~-~-~----~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~   56 (198)
                      -|.+++.++++.+.+. . +    --+|+|.|. +-+|.++.++.+.++|+|-+-+
T Consensus       275 atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~dLrelGVDivtI  329 (398)
T PTZ00413        275 ASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLRDLRTAGVSAVTL  329 (398)
T ss_pred             CCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHHHHHHcCCcEEee
Confidence            4789999999998876 2 3    357899775 7999999999999999998877

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=87.28  E-value=6.6  Score=35.39  Aligned_cols=84  Identities=17%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             HHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC-CCCcCCC-------CCHHHHHHHHHHHHccCC
Q psy9711          14 KIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILC-PYYFQKK-------MTEDLIYEHFISVADNSP   83 (198)
Q Consensus        14 ~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~-------~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++.+.+.. +.+||+| |.+      .+.++++.++|||++.+.- |-+...+       ..+..-+....++++..+
T Consensus       278 ~~i~~ik~~~p~~~vi~g~v~t------~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~  351 (505)
T PLN02274        278 EMIKYIKKTYPELDVIGGNVVT------MYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHG  351 (505)
T ss_pred             HHHHHHHHhCCCCcEEEecCCC------HHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcC
Confidence            4566666555 6888875 543      4557788889999998751 2222211       012234555788888888


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      +||+.     -.|+.-+-+..+-|+
T Consensus       352 vpVIa-----dGGI~~~~di~kAla  371 (505)
T PLN02274        352 VPVIA-----DGGISNSGHIVKALT  371 (505)
T ss_pred             CeEEE-----eCCCCCHHHHHHHHH
Confidence            99876     456666666666666

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=87.25  E-value=6.9  Score=30.87  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC-CCHHHHHHHHHHHHccCCCCEEE
Q psy9711          10 EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK-MTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        10 ~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~-~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ++..++++.+.+..++++++++.  +.++    ++.+.+.|+|.+.+..-.+.... .......++.+++.+.+++|++.
T Consensus       105 ~~~~~~i~~~~~~~~i~vi~~v~--t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia  178 (221)
T PRK01130        105 ETLAELVKRIKEYPGQLLMADCS--TLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA  178 (221)
T ss_pred             CCHHHHHHHHHhCCCCeEEEeCC--CHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE
Confidence            44455666655412566665554  2333    35666777776654221110000 00112245666666666667664


Q ss_pred             EeCCCCccccc-CHHHHHHHHcC
Q psy9711          89 YNNTFVTNIDI-SVDTLVKLAHH  110 (198)
Q Consensus        89 Yn~P~~tg~~l-~~~~l~~L~~~  110 (198)
                           ..  .+ +++.+.++.+.
T Consensus       179 -----~G--GI~t~~~~~~~l~~  194 (221)
T PRK01130        179 -----EG--RINTPEQAKKALEL  194 (221)
T ss_pred             -----EC--CCCCHHHHHHHHHC
Confidence                 12  23 56666666544

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems

Probab=87.24  E-value=8.3  Score=30.74  Aligned_cols=78  Identities=9%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ++..-..++++.+.+++   +..++..-+..+.+.-.+..+.+...++|++++.+... ..   -+..   ++.+ ...+
T Consensus         9 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~---~~~~---i~~~-~~~~   80 (273)
T cd06309           9 AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVE-TG---WDPV---LKEA-KAAG   80 (273)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcc-cc---chHH---HHHH-HHCC
Confidence            44555566777777666   77777766666777778888888899999999975331 11   1222   3333 3468


Q ss_pred             CCEEEEeCC
Q psy9711          84 IPVIIYNNT   92 (198)
Q Consensus        84 ~pi~lYn~P   92 (198)
                      +|++++|..
T Consensus        81 iPvV~~~~~   89 (273)
T cd06309          81 IPVILVDRG   89 (273)
T ss_pred             CCEEEEecC
Confidence            999999963

Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=87.21  E-value=3.9  Score=34.71  Aligned_cols=68  Identities=10%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711          15 IISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      +++.+.+. ++|+=.||.+.|+                 +.+++.++.++++|.+-+.++-    +.| +....++-|+.
T Consensus       115 vVe~Ak~~-g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~----K~S-dv~~~v~aYr~  188 (361)
T COG0821         115 VVEAAKDK-GIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSV----KAS-DVQLMVAAYRL  188 (361)
T ss_pred             HHHHHHHc-CCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE----EcC-CHHHHHHHHHH
Confidence            44444333 8999999988885                 3457888999999999887763    443 58889999999


Q ss_pred             HHccCCCCEEE
Q psy9711          78 VADNSPIPVII   88 (198)
Q Consensus        78 i~~~~~~pi~l   88 (198)
                      ++.+++.|+=|
T Consensus       189 lA~~~dyPLHL  199 (361)
T COG0821         189 LAKRCDYPLHL  199 (361)
T ss_pred             HHHhcCCCccc
Confidence            99999877644

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=87.02  E-value=8  Score=32.87  Aligned_cols=55  Identities=9%  Similarity=-0.030  Sum_probs=42.5

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC--CCEEEE
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIY   89 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~--~pi~lY   89 (198)
                      ...+.++.+++++.+.+.|++.+.+.-.. ...  +|+++.++++.+-+..+  +||-++
T Consensus       138 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~-G~~--~P~~v~~~v~~l~~~l~~~i~ig~H  194 (333)
T TIGR03217       138 HMTPPEKLAEQAKLMESYGADCVYIVDSA-GAM--LPDDVRDRVRALKAVLKPETQVGFH  194 (333)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCEEEEccCC-CCC--CHHHHHHHHHHHHHhCCCCceEEEE
Confidence            44567888999999999999988776544 333  39999999999988775  788765

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK07695 transcriptional regulator TenI; Provisional

Probab=87.02  E-value=3.4  Score=32.18  Aligned_cols=72  Identities=18%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL  104 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l  104 (198)
                      .++|++..+.+    .++.+.++|+|.+++. |.+...+.  .+..-.++++.+.+.+++||+.     ..|  ++++.+
T Consensus        96 ~~ig~s~~s~e----~a~~a~~~Gadyi~~g-~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia-----~GG--I~~~~~  163 (201)
T PRK07695         96 LHVGYSVHSLE----EAIQAEKNGADYVVYG-HVFPTDCKKGVPARGLEELSDIARALSIPVIA-----IGG--ITPENT  163 (201)
T ss_pred             CEEEEeCCCHH----HHHHHHHcCCCEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE-----EcC--CCHHHH
Confidence            34566554443    4677888999998764 44332210  0111246778888878888886     233  378888


Q ss_pred             HHHHcC
Q psy9711         105 VKLAHH  110 (198)
Q Consensus       105 ~~L~~~  110 (198)
                      .++.+.
T Consensus       164 ~~~~~~  169 (201)
T PRK07695        164 RDVLAA  169 (201)
T ss_pred             HHHHHc
Confidence            888753

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=86.97  E-value=9.9  Score=31.87  Aligned_cols=140  Identities=17%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCC----------CcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPY----------YFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~----------y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ..|+++++++++.+...+-++.+.+.|+|++=+-  .|.          +.-  .+++.+.+..+.+.+++++||-+=- 
T Consensus        53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll--~~p~~~~~iv~~~~~~~~~pvsvKi-  129 (309)
T PF01207_consen   53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALL--KDPDLLAEIVKAVRKAVPIPVSVKI-  129 (309)
T ss_dssp             T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGG--C-HHHHHHHHHHHHHH-SSEEEEEE-
T ss_pred             ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhh--cChHHhhHHHHhhhcccccceEEec-
Confidence            6799999999999999999999999999998775  444          111  2489999999999999999997643 


Q ss_pred             CCCcccccCH----HHHHHHHcCCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecChhh---HHHHhhc
Q psy9711          92 TFVTNIDISV----DTLVKLAHHENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSAGY---LLSGLLV  152 (198)
Q Consensus        92 P~~tg~~l~~----~~l~~L~~~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d~~---~~~~l~~  152 (198)
                        +.|.+-+.    +.+..|.+.+ +.++         +.+   |++.+.++.. ..+ =..+.+|+=..   ....+..
T Consensus       130 --R~g~~~~~~~~~~~~~~l~~~G-~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~-~~~-ipvi~NGdI~s~~d~~~~~~~  204 (309)
T PF01207_consen  130 --RLGWDDSPEETIEFARILEDAG-VSAITVHGRTRKQRYKGPADWEAIAEIKE-ALP-IPVIANGDIFSPEDAERMLEQ  204 (309)
T ss_dssp             --ESECT--CHHHHHHHHHHHHTT---EEEEECS-TTCCCTS---HHHHHHCHH-C-T-SEEEEESS--SHHHHHHHCCC
T ss_pred             --ccccccchhHHHHHHHHhhhcc-cceEEEecCchhhcCCcccchHHHHHHhh-ccc-ceeEEcCccCCHHHHHHHHHh
Confidence              45555333    3333333333 5555         222   6777776653 333 22344553222   2233433


Q ss_pred             -CCCeEEeccccc-chHHHHH
Q psy9711         153 -GCAGGINALSAV-LGGPICE  171 (198)
Q Consensus       153 -G~~G~is~~~n~-~P~~~~~  171 (198)
                       |++|++.|-+.+ -|.++.+
T Consensus       205 tg~dgvMigRgal~nP~lf~~  225 (309)
T PF01207_consen  205 TGADGVMIGRGALGNPWLFRE  225 (309)
T ss_dssp             H-SSEEEESHHHCC-CCHHCH
T ss_pred             cCCcEEEEchhhhhcCHHhhh
Confidence             999999998865 4777764

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=86.95  E-value=2.6  Score=35.84  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      .++.++.|+.|++.||....+..-.+.++ .+.+.+.+..+.|-+.+++++++     ..| .++.+...+|++
T Consensus        86 ~eeIle~Ak~ak~~Ga~r~c~~aagr~~~-~~~~~i~~~v~~Vk~~~~le~c~-----slG-~l~~eq~~~L~~  152 (335)
T COG0502          86 VEEILEAAKKAKAAGATRFCMGAAGRGPG-RDMEEVVEAIKAVKEELGLEVCA-----SLG-MLTEEQAEKLAD  152 (335)
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCCC-ccHHHHHHHHHHHHHhcCcHHhh-----ccC-CCCHHHHHHHHH
Confidence            47899999999999977766666555422 35899999999999889998887     345 788888888874

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=86.91  E-value=2.5  Score=35.89  Aligned_cols=129  Identities=10%  Similarity=0.075  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHhcC-------CeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQETK-------KTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~-------~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..+.-.++++.+.+..+       +||++=++.+-+ ++..+.++.+++.|+|++.+..-.+..     +        + 
T Consensus       187 ~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~-----~--------~-  252 (335)
T TIGR01036       187 YKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSR-----S--------L-  252 (335)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCcc-----c--------c-
Confidence            45666677888776653       999999987655 478889999999999999998755311     0        0 


Q ss_pred             ccCCCCEEEEeCCC---CcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhc
Q psy9711          80 DNSPIPVIIYNNTF---VTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLV  152 (198)
Q Consensus        80 ~~~~~pi~lYn~P~---~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~  152 (198)
                              +- .|.   ..| .+|-..+..++            ...+.++. +..+.++.+.  .|-.  +.....+.+
T Consensus       253 --------~~-~~~~~~~~G-GlSG~~i~p~a------------l~~v~~~~-~~~~~~ipiig~GGI~~~~da~e~l~a  309 (335)
T TIGR01036       253 --------VQ-GPKNSDETG-GLSGKPLQDKS------------TEIIRRLY-AELQGRLPIIGVGGISSAQDALEKIRA  309 (335)
T ss_pred             --------cc-CccccCCCC-cccCHHHHHHH------------HHHHHHHH-HHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence                    00 011   111 24444444442            23333333 2233445544  2322  246677888


Q ss_pred             CCCeEEecccccc--hHHHHHHH
Q psy9711         153 GCAGGINALSAVL--GGPICELY  173 (198)
Q Consensus       153 G~~G~is~~~n~~--P~~~~~l~  173 (198)
                      |++.+..+++.+.  |..+.++-
T Consensus       310 GA~~Vqv~ta~~~~Gp~~~~~i~  332 (335)
T TIGR01036       310 GASLLQIYSGFIYWGPPLVKEIV  332 (335)
T ss_pred             CCcHHHhhHHHHHhCchHHHHHH
Confidence            9998887877655  76665553

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.87  E-value=8.4  Score=30.56  Aligned_cols=75  Identities=9%  Similarity=0.046  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      -..++++.+.+++   +..++...+..+.+...+..+.+...++|++++.+.. ..      ...+..+.+ ...++|++
T Consensus        14 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~~------~~~~~l~~~-~~~~iPvV   85 (275)
T cd06317          14 YQTTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD-GQ------AYIPGLRKA-KQAGIPVV   85 (275)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC-cc------ccHHHHHHH-HHCCCcEE
Confidence            3344445544444   6666666666778888888998889999999886532 11      112233443 34689999


Q ss_pred             EEeCCC
Q psy9711          88 IYNNTF   93 (198)
Q Consensus        88 lYn~P~   93 (198)
                      ++|.+.
T Consensus        86 ~~~~~~   91 (275)
T cd06317          86 ITNSNI   91 (275)
T ss_pred             EeCCCC
Confidence            998754

Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=86.74  E-value=9.7  Score=32.87  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      .+|.+.    ++.+++..++||++ ||++      .+-++.+.++|+|++.+..-
T Consensus       214 ~~~w~~----i~~l~~~~~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~H  258 (367)
T TIGR02708       214 KLSPRD----IEEIAGYSGLPVYVKGPQC------PEDADRALKAGASGIWVTNH  258 (367)
T ss_pred             CCCHHH----HHHHHHhcCCCEEEeCCCC------HHHHHHHHHcCcCEEEECCc
Confidence            456643    44444444899988 6654      66778888999999998853

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=86.72  E-value=2.9  Score=36.34  Aligned_cols=56  Identities=7%  Similarity=-0.009  Sum_probs=43.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ   63 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~   63 (198)
                      -+++.-.++++.+.+..++||++=.+. +..+..+.++.+.+.|+|++.+..-....
T Consensus       165 q~~e~~~~i~~~Vk~~~~iPv~vKLsP-n~t~i~~ia~aa~~~Gadgi~liNT~~~~  220 (385)
T PLN02495        165 QDCDLLEEVCGWINAKATVPVWAKMTP-NITDITQPARVALKSGCEGVAAINTIMSV  220 (385)
T ss_pred             cCHHHHHHHHHHHHHhhcCceEEEeCC-ChhhHHHHHHHHHHhCCCEEEEecccCcc
Confidence            455556667777765559999999985 56678899999999999999999766543

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=86.67  E-value=11  Score=30.41  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..-..++++-+.+++   +..+++..+..+.++..+..+.+.+.++|++++.+..       .+.....++.+. ..++
T Consensus        10 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~-------~~~~~~~l~~l~-~~~i   81 (288)
T cd01538          10 TEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVD-------GEALASAVEKAA-DAGI   81 (288)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------hhhHHHHHHHHH-HCCC
Confidence            3444556666666655   6777776666677777888888889999999987532       222334555544 3589


Q ss_pred             CEEEEeCC
Q psy9711          85 PVIIYNNT   92 (198)
Q Consensus        85 pi~lYn~P   92 (198)
                      |++..|.+
T Consensus        82 pvV~~~~~   89 (288)
T cd01538          82 PVIAYDRL   89 (288)
T ss_pred             CEEEECCC
Confidence            99999875

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=86.66  E-value=2.1  Score=35.12  Aligned_cols=164  Identities=21%  Similarity=0.165  Sum_probs=99.4

Q ss_pred             CeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-C----
Q psy9711          25 KTIIAG-TYCESTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-T----   92 (198)
Q Consensus        25 ~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P----   92 (198)
                      ..|++| ++-.|-+..++-|+..+++|++.+--.      +||-+..-  .++-+.+.++.++.+++|++-=-. |    
T Consensus        46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl--ge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e  123 (286)
T COG2876          46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL--GEEGLKLLKRAADETGLPVVTEVMDVRDVE  123 (286)
T ss_pred             eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc--CHHHHHHHHHHHHHcCCeeEEEecCHHHHH
Confidence            456676 677788999999999999999987654      36555443  667789999999999999985311 0    


Q ss_pred             ---------CC-cccccCHHHHHHHHc-----------------------------CCCEEEEeeC------------CH
Q psy9711          93 ---------FV-TNIDISVDTLVKLAH-----------------------------HENIRGVKDT------------DN  121 (198)
Q Consensus        93 ---------~~-tg~~l~~~~l~~L~~-----------------------------~p~i~giK~s------------d~  121 (198)
                               +. .++.=.-++++++-+                             ++||+=+--.            |+
T Consensus       124 ~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi  203 (286)
T COG2876         124 AAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDI  203 (286)
T ss_pred             HHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceech
Confidence                     00 011111223333332                             3344322111            22


Q ss_pred             HHHHHHHhhcCCCCeEEE------ecChhhH----HHHhhcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         122 IKLANMANQTKDLNFSVF------AGSAGYL----LSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       122 ~~~~~~~~~~~~~~~~v~------~G~d~~~----~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      ..+.. +++.  ..+.|+      +|...+.    ..++..|+||.+--   +.|+.-..+-++-++=+.++-.++.+.+
T Consensus       204 ~aV~~-~kq~--THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE---VHp~P~~AlsD~~Qql~~~~f~~l~~~~  277 (286)
T COG2876         204 SAVPI-LKQE--THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE---VHPDPEKALSDAKQQLTPEEFEELVKEL  277 (286)
T ss_pred             HHHHH-HHhh--cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE---ecCCcccccCcccccCCHHHHHHHHHHH
Confidence            22111 1111  223332      4554433    34578899999855   4888888888888888888888888877


Q ss_pred             hchhh
Q psy9711         192 VKPDV  196 (198)
Q Consensus       192 ~~l~~  196 (198)
                      ..+.+
T Consensus       278 ~~~~~  282 (286)
T COG2876         278 RALAD  282 (286)
T ss_pred             HHHhh
Confidence            66544

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=86.57  E-value=6.8  Score=34.96  Aligned_cols=53  Identities=13%  Similarity=0.118  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      +.+..+++++.+.++|+|.+.+.-.. ...  +|.++.+.++.+-+.+++||-+|-
T Consensus       151 t~e~~~~~a~~l~~~Gad~I~i~Dt~-G~l--~P~~v~~Lv~~lk~~~~vpI~~H~  203 (467)
T PRK14041        151 TLEYYLEFARELVDMGVDSICIKDMA-GLL--TPKRAYELVKALKKKFGVPVEVHS  203 (467)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCcc-CCc--CHHHHHHHHHHHHHhcCCceEEEe
Confidence            45778888999999999977776444 223  388999999999888888887763

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=86.48  E-value=7.4  Score=30.95  Aligned_cols=77  Identities=10%  Similarity=0.144  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .-..++++-+.+.+   +.-+++.....+.+.-.+..+...+.++|++++.++....    ......+++.+. ..++|+
T Consensus        12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~----~~~~~~~i~~~~-~~~ipv   86 (273)
T cd06292          12 PIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHAD----THADHSHYERLA-ERGLPV   86 (273)
T ss_pred             chHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCc----ccchhHHHHHHH-hCCCCE
Confidence            33455555555555   6666666666677777888899999999999998754221    223445555553 468999


Q ss_pred             EEEeC
Q psy9711          87 IIYNN   91 (198)
Q Consensus        87 ~lYn~   91 (198)
                      +.++.
T Consensus        87 V~i~~   91 (273)
T cd06292          87 VLVNG   91 (273)
T ss_pred             EEEcC
Confidence            99985

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=86.48  E-value=15  Score=29.37  Aligned_cols=100  Identities=14%  Similarity=0.077  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEee
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD  118 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~  118 (198)
                      ..+..+..+++|+.+-+.+.|.      |+-+.+.+|   .+.++.=+++=-+|+..|..+-++.+.++.          
T Consensus        99 ~~~~l~~Ir~~g~k~GlalnP~------T~~~~i~~~---l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~----------  159 (223)
T PRK08745         99 VHRTIQLIKSHGCQAGLVLNPA------TPVDILDWV---LPELDLVLVMSVNPGFGGQAFIPSALDKLR----------  159 (223)
T ss_pred             HHHHHHHHHHCCCceeEEeCCC------CCHHHHHHH---HhhcCEEEEEEECCCCCCccccHHHHHHHH----------
Confidence            3444455556677777776664      133333333   334444455555677777777777766663          


Q ss_pred             CCHHHHHHHHhhcCCCC--eEEEecCh-hhHHHHhhcCCCeEEeccc
Q psy9711         119 TDNIKLANMANQTKDLN--FSVFAGSA-GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       119 sd~~~~~~~~~~~~~~~--~~v~~G~d-~~~~~~l~~G~~G~is~~~  162 (198)
                          ++++++. ..+.+  +.|=.|-. +.+.....+|++.+++|.+
T Consensus       160 ----~l~~~~~-~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSa  201 (223)
T PRK08745        160 ----AIRKKID-ALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSA  201 (223)
T ss_pred             ----HHHHHHH-hcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence                3334432 22334  33334444 3555677899999999976

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=86.48  E-value=4.6  Score=31.61  Aligned_cols=81  Identities=14%  Similarity=0.228  Sum_probs=55.5

Q ss_pred             CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEE-EeCCCCcccccCHHHHHHHHc--
Q psy9711          34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVII-YNNTFVTNIDISVDTLVKLAH--  109 (198)
Q Consensus        34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~l-Yn~P~~tg~~l~~~~l~~L~~--  109 (198)
                      .+++.-+..++.|.+.|||.+-+..++-...+...+.+.+...++.+.+ ++|+.+ +..+.     ++++.+.+.++  
T Consensus        66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-----l~~~~i~~a~ria  140 (203)
T cd00959          66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----LTDEEIIKACEIA  140 (203)
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCHHHHHHHHHHH
Confidence            4466677779999999999999998863221213677888999999887 577754 33332     35666655553  


Q ss_pred             -CCCEEEEeeC
Q psy9711         110 -HENIRGVKDT  119 (198)
Q Consensus       110 -~p~i~giK~s  119 (198)
                       --..-.||-+
T Consensus       141 ~e~GaD~IKTs  151 (203)
T cd00959         141 IEAGADFIKTS  151 (203)
T ss_pred             HHhCCCEEEcC
Confidence             3467778876

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=86.33  E-value=13  Score=29.82  Aligned_cols=75  Identities=9%  Similarity=-0.106  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .=..++++.+.+++   +..++..-+..+.+...+..+.+.+.++|++++.+..       .+...+.++.+. ..++|+
T Consensus        12 ~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~-------~~~~~~~i~~~~-~~~iPv   83 (272)
T cd06313          12 TWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLG-------IGTLTEAVQKAI-ARGIPV   83 (272)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hHHhHHHHHHHH-HCCCcE
Confidence            33445555555555   7777777666677888899999999999999996432       222223344444 358999


Q ss_pred             EEEeCC
Q psy9711          87 IIYNNT   92 (198)
Q Consensus        87 ~lYn~P   92 (198)
                      +++|.+
T Consensus        84 V~~~~~   89 (272)
T cd06313          84 IDMGTL   89 (272)
T ss_pred             EEeCCC
Confidence            999864

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK05481 lipoyl synthase; Provisional

Probab=86.28  E-value=10  Score=31.53  Aligned_cols=81  Identities=12%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc---CCCC---cCCCCCHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL---CPYY---FQKKMTEDLIYEH   74 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~---~P~y---~~~~~~~~~i~~y   74 (198)
                      ..|.+++.++++.+.+..     +.-+|+|. +.+.++-.+..+...++|.|.+-+.   +|.+   .-+...-.+-.+.
T Consensus       176 ~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~  254 (289)
T PRK05481        176 GADYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDE  254 (289)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHH
Confidence            458899999999999883     56789999 6799999999999999999988884   3333   1111112334455


Q ss_pred             HHHHHccCCCCEE
Q psy9711          75 FISVADNSPIPVI   87 (198)
Q Consensus        75 ~~~i~~~~~~pi~   87 (198)
                      +..++...+..-+
T Consensus       255 l~~~~~~i~~~~~  267 (289)
T PRK05481        255 YKEIALELGFLHV  267 (289)
T ss_pred             HHHHHHHcCchhe
Confidence            5555555554433

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=86.23  E-value=15  Score=29.04  Aligned_cols=136  Identities=13%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEE-e-
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIY-N-   90 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lY-n-   90 (198)
                      ++++.+.+.+.+|+++|-|=.+.+++    +.+.++||+.+++..-...  +  ++    .+++++++.+ -++++- + 
T Consensus        62 ~~i~~i~~~~~~pi~~ggGI~~~ed~----~~~~~~Ga~~vvlgs~~l~--d--~~----~~~~~~~~~g~~~i~~sid~  129 (230)
T TIGR00007        62 PVIKKIVRETGVPVQVGGGIRSLEDV----EKLLDLGVDRVIIGTAAVE--N--PD----LVKELLKEYGPERIVVSLDA  129 (230)
T ss_pred             HHHHHHHHhcCCCEEEeCCcCCHHHH----HHHHHcCCCEEEEChHHhh--C--HH----HHHHHHHHhCCCcEEEEEEE
Confidence            56666666668899998776555554    4555689999987533321  1  33    3455555543 223321 1 


Q ss_pred             -------CCCCcccccCH-HHHHHHHcC--CCEEEE---e----eC-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHh
Q psy9711          91 -------NTFVTNIDISV-DTLVKLAHH--ENIRGV---K----DT-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGL  150 (198)
Q Consensus        91 -------~P~~tg~~l~~-~~l~~L~~~--p~i~gi---K----~s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l  150 (198)
                             .-.......++ +...++.+.  ..++-.   +    .. |...+.++.+ ..+-.+..-.|..  +.+...+
T Consensus       130 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~-~~~ipvia~GGi~~~~di~~~~  208 (230)
T TIGR00007       130 RGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVK-AVNVPVIASGGVSSIDDLIALK  208 (230)
T ss_pred             ECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHH-hCCCCEEEeCCCCCHHHHHHHH
Confidence                   01111122444 444555543  333321   1    11 5666666653 2222232222222  2344556


Q ss_pred             hcCCCeEEeccc
Q psy9711         151 LVGCAGGINALS  162 (198)
Q Consensus       151 ~~G~~G~is~~~  162 (198)
                      ..|++|++.|.+
T Consensus       209 ~~Gadgv~ig~a  220 (230)
T TIGR00007       209 KLGVYGVIVGKA  220 (230)
T ss_pred             HCCCCEEEEeHH
Confidence            789999998876

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=86.21  E-value=14  Score=30.99  Aligned_cols=172  Identities=9%  Similarity=0.069  Sum_probs=103.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--------CCCCCHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYYF--------QKKMTEDLIYEHF   75 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--------~~~~~~~~i~~y~   75 (198)
                      .+|.+|..+.++.++..+.+||++=+  |-.+..++.+.++...++|+.++.+---.+-        +.-.+.++..+-.
T Consensus        59 ~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI  138 (294)
T TIGR02319        59 FTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKI  138 (294)
T ss_pred             CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHH
Confidence            68999999999999888799999954  4445666889999999999999999753321        1112478888888


Q ss_pred             HHHHccC-CCCEEEEeC-CCCcccccCHHHHHHHHc---C-CCEEEEeeC--CHHHHHHHHhhcCCCCe--EEEecChh-
Q psy9711          76 ISVADNS-PIPVIIYNN-TFVTNIDISVDTLVKLAH---H-ENIRGVKDT--DNIKLANMANQTKDLNF--SVFAGSAG-  144 (198)
Q Consensus        76 ~~i~~~~-~~pi~lYn~-P~~tg~~l~~~~l~~L~~---~-p~i~giK~s--d~~~~~~~~~~~~~~~~--~v~~G~d~-  144 (198)
                      +...++. +-+++|-=- -.+.+..+ .+.+.|...   - -.++-+ ++  +...+.++.+. .+.++  .+..|... 
T Consensus       139 ~Aa~~A~~~~d~~I~ARTDa~~~~g~-deaI~Ra~aY~eAGAD~ifi-~~~~~~~ei~~~~~~-~~~P~~~nv~~~~~~p  215 (294)
T TIGR02319       139 EAAVEAREDEDFTIIARTDARESFGL-DEAIRRSREYVAAGADCIFL-EAMLDVEEMKRVRDE-IDAPLLANMVEGGKTP  215 (294)
T ss_pred             HHHHHhccCCCeEEEEEecccccCCH-HHHHHHHHHHHHhCCCEEEe-cCCCCHHHHHHHHHh-cCCCeeEEEEecCCCC
Confidence            8887765 345665321 11112223 356776652   2 234444 23  66666666643 33334  45654321 


Q ss_pred             --hHHHHhhcCCCeEEecccccch--HHHHHHHHHHH-cCC
Q psy9711         145 --YLLSGLLVGCAGGINALSAVLG--GPICELYDLAK-AGK  180 (198)
Q Consensus       145 --~~~~~l~~G~~G~is~~~n~~P--~~~~~l~~~~~-~gd  180 (198)
                        .+-..-.+|.+=++-+...+..  ..+.+..+.++ +|.
T Consensus       216 ~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~l~~~G~  256 (294)
T TIGR02319       216 WLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELREAGT  256 (294)
T ss_pred             CCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHHHHHcCC
Confidence              2334456788877766554332  33444444443 443

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=86.10  E-value=14  Score=28.56  Aligned_cols=134  Identities=13%  Similarity=0.060  Sum_probs=69.7

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.++.+.+..+.|+.+++-..+..   +.++.+.+.|+|++.+..-    +   .++..+.. ..+...++.+++--.|.
T Consensus        46 ~~v~~i~~~~~~~v~v~lm~~~~~---~~~~~~~~~gadgv~vh~~----~---~~~~~~~~-~~~~~~g~~~~~~~~~~  114 (210)
T TIGR01163        46 PVLEALRKYTDLPIDVHLMVENPD---RYIEDFAEAGADIITVHPE----A---SEHIHRLL-QLIKDLGAKAGIVLNPA  114 (210)
T ss_pred             HHHHHHHhcCCCcEEEEeeeCCHH---HHHHHHHHcCCCEEEEccC----C---chhHHHHH-HHHHHcCCcEEEEECCC
Confidence            344444443366776776665543   5677778999999888431    1   23333333 33344565555544332


Q ss_pred             CcccccCHHHHHHHHcCCCEEEE--e------eC-CH---HHHHHHHh--hcCCCCeEE--EecCh-hhHHHHhhcCCCe
Q psy9711          94 VTNIDISVDTLVKLAHHENIRGV--K------DT-DN---IKLANMAN--QTKDLNFSV--FAGSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~p~i~gi--K------~s-d~---~~~~~~~~--~~~~~~~~v--~~G~d-~~~~~~l~~G~~G  156 (198)
                           -+.+.+.++...+..+.+  +      .. ++   ..+.++.+  ...++++.+  -.|-. +.+...+..|++|
T Consensus       115 -----t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~  189 (210)
T TIGR01163       115 -----TPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADI  189 (210)
T ss_pred             -----CCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCE
Confidence                 236667777644443332  1      12 22   22322221  111233334  33443 3455667899999


Q ss_pred             EEecccc
Q psy9711         157 GINALSA  163 (198)
Q Consensus       157 ~is~~~n  163 (198)
                      ++.|.+-
T Consensus       190 iivgsai  196 (210)
T TIGR01163       190 LVAGSAI  196 (210)
T ss_pred             EEEChHH
Confidence            9988653

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []

Probab=86.01  E-value=19  Score=30.18  Aligned_cols=155  Identities=17%  Similarity=0.156  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhc--CCeEEEeCCCCc---------------------------------HHHHHHHHHHHHhcCCCEEE
Q psy9711          11 EKLKIISTLRQET--KKTIIAGTYCES---------------------------------TRATIDLTQKAAKAGANAAL   55 (198)
Q Consensus        11 Er~~l~~~~~~~~--~~pvi~gv~~~~---------------------------------~~~~i~~a~~a~~~Gad~v~   55 (198)
                      +..+.++.+.+..  ++||+..++++-                                 ++-.++.++...+.|+|++.
T Consensus       121 ~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~  200 (343)
T PF01208_consen  121 EVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIF  200 (343)
T ss_dssp             HHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred             HHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            4455566666665  788888775321                                 13345667777899999998


Q ss_pred             EcCCCCcCCCCCHHHHH----HHHHHHHccC---CC-CEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC-CHHHHH
Q psy9711          56 ILCPYYFQKKMTEDLIY----EHFISVADNS---PI-PVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT-DNIKLA  125 (198)
Q Consensus        56 ~~~P~y~~~~~~~~~i~----~y~~~i~~~~---~~-pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s-d~~~~~  125 (198)
                      +....-.-.  |++...    -|++.+.+..   +. ++++|....    .  ...+..+.+.+ ++..+-.. |+....
T Consensus       201 ~~d~~~~~i--sp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~----~--~~~~~~l~~~g~d~~~~~~~~~~~~~~  272 (343)
T PF01208_consen  201 IFDSSGSLI--SPEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN----T--TPILDDLADLGADVLSVDEKVDLAEAK  272 (343)
T ss_dssp             EEETTGGGS---HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH----G---GGHHHHHTSS-SEEEE-TTS-HHHHH
T ss_pred             ccccccCCC--CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc----h--HHHHHHHHhcCCCEEEEcCCCCHHHHH
Confidence            876222222  355544    4467777766   34 888887542    1  23677777765 56665444 664443


Q ss_pred             HHHhhcCCCCeEEEecChhh--HH-----------HHhh---cCCCeEEecccccc-----hHHHHHHHHHHH
Q psy9711         126 NMANQTKDLNFSVFAGSAGY--LL-----------SGLL---VGCAGGINALSAVL-----GGPICELYDLAK  177 (198)
Q Consensus       126 ~~~~~~~~~~~~v~~G~d~~--~~-----------~~l~---~G~~G~is~~~n~~-----P~~~~~l~~~~~  177 (198)
                      +.+    +++..++.|.|..  +.           ..+.   .+..|+|-+.+|-+     |+-+..++++++
T Consensus       273 ~~~----~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~  341 (343)
T PF01208_consen  273 RKL----GDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVK  341 (343)
T ss_dssp             HHH----TTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHH
T ss_pred             HHh----CCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHH
Confidence            322    3666666666541  21           2233   35788888877633     466777777665

URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....

>PLN02979 glycolate oxidase

Probab=85.96  E-value=20  Score=30.92  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=30.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      .+|.++    ++.+++..++|||+ ||.+      .+-++.+.++|+|++.+..-
T Consensus       209 ~ltW~d----l~wlr~~~~~PvivKgV~~------~~dA~~a~~~Gvd~I~Vsnh  253 (366)
T PLN02979        209 TLSWKD----VQWLQTITKLPILVKGVLT------GEDARIAIQAGAAGIIVSNH  253 (366)
T ss_pred             CCCHHH----HHHHHhccCCCEEeecCCC------HHHHHHHHhcCCCEEEECCC
Confidence            466655    33334444899988 6753      56677889999999999854

>cd04732 HisA HisA

Probab=85.95  E-value=4.8  Score=31.88  Aligned_cols=19  Identities=16%  Similarity=0.267  Sum_probs=8.7

Q ss_pred             HHHHHHHHHhcCCCEEEEc
Q psy9711          39 TIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~   57 (198)
                      ..++++..++.|++.+++.
T Consensus       148 ~~~~~~~~~~~ga~~iii~  166 (234)
T cd04732         148 LEELAKRFEELGVKAIIYT  166 (234)
T ss_pred             HHHHHHHHHHcCCCEEEEE
Confidence            3444444444444444443

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=85.94  E-value=1.9  Score=36.67  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             CeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHcc-CCCCEEEEeC
Q psy9711          25 KTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADN-SPIPVIIYNN   91 (198)
Q Consensus        25 ~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~-~~~pi~lYn~   91 (198)
                      ..||+=+--.|.        -+..+.++.+++.||+++.++. |.||..+  .    +|.+.+.++ +++||+-=|+
T Consensus       119 ~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs--~----e~L~~vr~~~v~lPvLrKDF  189 (338)
T PLN02460        119 PGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGS--F----ENLEAIRNAGVKCPLLCKEF  189 (338)
T ss_pred             cceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCCC--H----HHHHHHHHcCCCCCEeeccc
Confidence            568876633222        3678999999999999999996 7777766  4    567888887 8999987664

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=85.75  E-value=17  Score=29.37  Aligned_cols=78  Identities=18%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             CCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccC
Q psy9711          24 KKTIIAGTYCESTRAT---IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS  100 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~---i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~  100 (198)
                      +-.|+=||...+.+++   +++++.+.+.|||-++...=.-....  .+-+++..+++|+.+.+|+.+      .|--=+
T Consensus        14 ~GrVVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~g--r~~~~~vv~r~A~~vfiPltV------GGGI~s   85 (256)
T COG0107          14 DGRVVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLDITASSEG--RETMLDVVERVAEQVFIPLTV------GGGIRS   85 (256)
T ss_pred             CCEEEecccccchhhcCChHHHHHHHHHcCCCeEEEEeccccccc--chhHHHHHHHHHhhceeeeEe------cCCcCC
Confidence            3456778877777655   99999999999999998865544444  788999999999999999987      233336


Q ss_pred             HHHHHHHHc
Q psy9711         101 VDTLVKLAH  109 (198)
Q Consensus       101 ~~~l~~L~~  109 (198)
                      .+.+.+|..
T Consensus        86 ~eD~~~ll~   94 (256)
T COG0107          86 VEDARKLLR   94 (256)
T ss_pred             HHHHHHHHH
Confidence            677777764

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=85.73  E-value=20  Score=29.96  Aligned_cols=152  Identities=13%  Similarity=0.048  Sum_probs=85.9

Q ss_pred             HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEE
Q psy9711          16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ++..++.-++-+..|+.+.-      -|+.++++|.+++....=.    ...|.   ++.+++.+..+.|++.+++||+.
T Consensus         7 lr~~l~~~~~~~~pg~~D~l------SAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a   80 (290)
T TIGR02321         7 LRAALDSGRLFTAMAAHNPL------VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIA   80 (290)
T ss_pred             HHHHHhCCCCEEeccccCHH------HHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEE
Confidence            33344332444556776532      2566777899999887521    12222   46899999999999999999776


Q ss_pred             EeCCCCcccccCHHH---HHHHHcCCCEEEEeeC-------------------CH----HHHHHHHhhcCCCCeEEEecC
Q psy9711          89 YNNTFVTNIDISVDT---LVKLAHHENIRGVKDT-------------------DN----IKLANMANQTKDLNFSVFAGS  142 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~---l~~L~~~p~i~giK~s-------------------d~----~~~~~~~~~~~~~~~~v~~G~  142 (198)
                       |.-  +|+.=++++   ++++. .-.++||--+                   +.    .+++.......+++|.|..=.
T Consensus        81 -D~d--~GyG~~~~v~~tV~~~~-~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART  156 (290)
T TIGR02321        81 -DID--TGFGNAVNVHYVVPQYE-AAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV  156 (290)
T ss_pred             -ECC--CCCCCcHHHHHHHHHHH-HcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence             442  555444443   34443 2344444333                   22    233333322345677765443


Q ss_pred             hhh---------H---HHHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711         143 AGY---------L---LSGLLVGCAGGINALSAVLGGPICELYDLAK  177 (198)
Q Consensus       143 d~~---------~---~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~  177 (198)
                      |..         +   -....+|+|++.--....-++.+.++.+.+.
T Consensus       157 Da~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~  203 (290)
T TIGR02321       157 EALIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP  203 (290)
T ss_pred             ccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence            432         2   2235789998865322235777777777653

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=85.72  E-value=9.4  Score=32.89  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711          15 IISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYY   61 (198)
Q Consensus        15 l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y   61 (198)
                      -++.+++..+.|+|+ ||.      ..+-++.+.++|+|++.+...-.
T Consensus       227 ~i~~ir~~~~~pviiKgV~------~~eda~~a~~~G~d~I~VSnhGG  268 (361)
T cd04736         227 DLRWLRDLWPHKLLVKGIV------TAEDAKRCIELGADGVILSNHGG  268 (361)
T ss_pred             HHHHHHHhCCCCEEEecCC------CHHHHHHHHHCCcCEEEECCCCc
Confidence            355555555667655 662      34556778889999999986443

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein

Probab=85.72  E-value=12  Score=30.54  Aligned_cols=77  Identities=12%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHHhc---C-CeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           8 TEEEKLKIISTLRQET---K-KTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~-~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +..=..++++-+.+++   + ..++. +.+..+.+...+..+.+.+.|+|++++.+.     .  .+.+...++.+. ..
T Consensus         9 ~~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-----~--~~~~~~~l~~~~-~~   80 (302)
T TIGR02637         9 GNPFFEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN-----D--PDALVPALKKAM-KR   80 (302)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----C--hHHHHHHHHHHH-HC
Confidence            3333455665555555   4 34443 345567788889999999999999999753     1  444455555554 36


Q ss_pred             CCCEEEEeCC
Q psy9711          83 PIPVIIYNNT   92 (198)
Q Consensus        83 ~~pi~lYn~P   92 (198)
                      ++|+++++.+
T Consensus        81 giPvV~~~~~   90 (302)
T TIGR02637        81 GIKVVTWDSG   90 (302)
T ss_pred             CCEEEEeCCC
Confidence            8999999864

This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=85.69  E-value=3.4  Score=36.26  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      .++++.+.+. +.+++.|+.+  +...++.++.+.+.|+|.+.+. |.|...+. .....++++.+.+..++||+.-   
T Consensus        97 ~~~i~~a~~~-G~~~~~g~~s--~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~-~~~~~~~l~~l~~~~~iPI~a~---  168 (430)
T PRK07028         97 EDAVRAARKY-GVRLMADLIN--VPDPVKRAVELEELGVDYINVH-VGIDQQML-GKDPLELLKEVSEEVSIPIAVA---  168 (430)
T ss_pred             HHHHHHHHHc-CCEEEEEecC--CCCHHHHHHHHHhcCCCEEEEE-eccchhhc-CCChHHHHHHHHhhCCCcEEEE---
Confidence            3455555543 7788877422  2223556788889999999765 54432110 1223467888887778999872   


Q ss_pred             CCcccccCHHHHHHHHcC
Q psy9711          93 FVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~~  110 (198)
                        .|  ++++.+.++.+.
T Consensus       169 --GG--I~~~n~~~~l~a  182 (430)
T PRK07028        169 --GG--LDAETAAKAVAA  182 (430)
T ss_pred             --CC--CCHHHHHHHHHc
Confidence              23  467777777643

>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=85.68  E-value=14  Score=29.77  Aligned_cols=73  Identities=10%  Similarity=0.003  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..++...+..+.++..+..+.+...++|++++.++.       .+.....++.+. ..++|+++
T Consensus        15 ~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~-------~~~~~~~~~~~~-~~~iPvV~   86 (280)
T cd06315          15 ILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD-------AAELQAELELAQ-KAGIPVVG   86 (280)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHHHHHHHH-HCCCCEEE
Confidence            345555555555   6666666666677777888889999999999998533       222224445543 46899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        87 ~d~~   90 (280)
T cd06315          87 WHAG   90 (280)
T ss_pred             ecCC
Confidence            9863

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=85.61  E-value=1.9  Score=33.06  Aligned_cols=55  Identities=27%  Similarity=0.387  Sum_probs=0.0

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ++|++..+.++    ++.+.+.|+|.+.+.|  |.-.+++ .+.-=.+.++.+++.+++||+
T Consensus        97 ~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~-~~~~g~~~l~~~~~~~~~pv~  153 (180)
T PF02581_consen   97 IIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPG-APPLGLDGLREIARASPIPVY  153 (180)
T ss_dssp             EEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEE
T ss_pred             EEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCcc-ccccCHHHHHHHHHhCCCCEE

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=85.50  E-value=13  Score=31.45  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             HHHHHHHHhcCCe-EEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcC-------CCCCHHHHHHHHHHHHccCC
Q psy9711          14 KIISTLRQETKKT-IIAG-TYCESTRATIDLTQKAAKAGANAALIL-CPYYFQ-------KKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus        14 ~l~~~~~~~~~~p-vi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~-------~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++.+.+..+.| |++| |+      +.+.++++.++|||++.+. -|--..       .....-+ .....+++++.+
T Consensus       126 ~~i~~i~~~~p~~~vi~GnV~------t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~-l~ai~ev~~a~~  198 (321)
T TIGR01306       126 NMIKHIKTHLPDSFVIAGNVG------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQ-LAALRWCAKAAR  198 (321)
T ss_pred             HHHHHHHHhCCCCEEEEecCC------CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchH-HHHHHHHHHhcC
Confidence            3455555544444 8888 75      5667788889999999877 333211       0000112 245667777778


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +||+.     ..|+.-+.+..+-|+-
T Consensus       199 ~pVIa-----dGGIr~~~Di~KALa~  219 (321)
T TIGR01306       199 KPIIA-----DGGIRTHGDIAKSIRF  219 (321)
T ss_pred             CeEEE-----ECCcCcHHHHHHHHHc
Confidence            88665     3677777777777773

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=85.49  E-value=19  Score=29.59  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             CeEEEe-CCCCcHHHHHHHHHHHHhcC----CCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE---
Q psy9711          25 KTIIAG-TYCESTRATIDLTQKAAKAG----ANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII---   88 (198)
Q Consensus        25 ~pvi~g-v~~~~~~~~i~~a~~a~~~G----ad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l---   88 (198)
                      ..+|+| ++-.|-+..++.|+..+++|    +.++.=        ..||-|.-- .-++=+++.+++.+.+++||+-   
T Consensus        11 ~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~-G~eeGL~~L~~vk~~~GlpvvTeV~   89 (264)
T PRK05198         11 FFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGP-GLEEGLKILQEVKETFGVPVLTDVH   89 (264)
T ss_pred             eEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHCCceEEEeC
Confidence            447788 56667778888999998854    444433        245544432 2477889999999999999973   


Q ss_pred             --------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 --------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                    ..+|.+.-.  ..+++..+++....|-+|-.
T Consensus        90 ~~~~~~~v~~~~DilQIgArn~r--n~~LL~a~g~t~kpV~lKrG  132 (264)
T PRK05198         90 EPEQAAPVAEVVDVLQIPAFLCR--QTDLLVAAAKTGKVVNIKKG  132 (264)
T ss_pred             CHHHHHHHHhhCcEEEECchhcc--hHHHHHHHhccCCeEEecCC
Confidence                          234554222  34777777777788888877

>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family

Probab=85.49  E-value=21  Score=30.07  Aligned_cols=121  Identities=13%  Similarity=0.006  Sum_probs=70.5

Q ss_pred             HHHHHHHHhc--CCeEEEeCCCCcH------------------------------HHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711          14 KIISTLRQET--KKTIIAGTYCEST------------------------------RATIDLTQKAAKAGANAALILCPYY   61 (198)
Q Consensus        14 ~l~~~~~~~~--~~pvi~gv~~~~~------------------------------~~~i~~a~~a~~~Gad~v~~~~P~y   61 (198)
                      +.++.+.+..  ++||+..++++=|                              +..++.++...++|+|++.+.-|.-
T Consensus       125 ~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a  204 (340)
T TIGR01463       125 EAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFA  204 (340)
T ss_pred             HHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCcc
Confidence            4455555555  5888888776622                              2346666777799999999988864


Q ss_pred             cCCCCCHHHHH----HHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC-CHHHHHHHHhhcC
Q psy9711          62 FQKKMTEDLIY----EHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT-DNIKLANMANQTK  132 (198)
Q Consensus        62 ~~~~~~~~~i~----~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s-d~~~~~~~~~~~~  132 (198)
                      ...-.+++...    .|++++.+..   +.+.++|..    |..  ...+..+.+.+ ++..+=.. |+....+    ..
T Consensus       205 ~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C----G~~--~~~~~~l~~~g~d~ls~d~~~~l~~~~~----~~  274 (340)
T TIGR01463       205 SSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC----GFT--QPILRDIANNGCFGFSVDMKPGMDHAKR----VI  274 (340)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC----CCc--hhhHHHHHHhCCCEEeecCCCCHHHHHH----Hc
Confidence            32112365444    5668888774   445555553    221  33566666643 66664444 7655433    33


Q ss_pred             CCCeEEEecChh
Q psy9711         133 DLNFSVFAGSAG  144 (198)
Q Consensus       133 ~~~~~v~~G~d~  144 (198)
                      +++..+..|.|.
T Consensus       275 g~~~~i~Gnidp  286 (340)
T TIGR01463       275 GGQASLVGNLSP  286 (340)
T ss_pred             CCceEEEecCCh
Confidence            455665655543

This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=85.45  E-value=5.5  Score=33.72  Aligned_cols=62  Identities=10%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .+.++..++..++||+++.|=.+..+    +..|.++|+|+|++..-..-..+  +-.+-+-|+.-.+
T Consensus       238 p~~i~~~~e~~~vpVivdAGIg~~sd----a~~AmelGadgVL~nSaIa~a~d--Pv~Ma~A~~~av~  299 (326)
T PRK11840        238 PYTIRLIVEGATVPVLVDAGVGTASD----AAVAMELGCDGVLMNTAIAEAKN--PVLMARAMKLAVE  299 (326)
T ss_pred             HHHHHHHHHcCCCcEEEeCCCCCHHH----HHHHHHcCCCEEEEcceeccCCC--HHHHHHHHHHHHH
Confidence            44566666666899999877665655    46788999999999987764444  8777777765443

>PRK06256 biotin synthase; Validated

Probab=85.44  E-value=9.6  Score=32.10  Aligned_cols=46  Identities=15%  Similarity=0.136  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEE
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAA   54 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v   54 (198)
                      |.+++.+.++.+.+..   ..-+|+|. ..+.++.++.++.+.++|++.+
T Consensus       185 t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v  233 (336)
T PRK06256        185 TYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDADSI  233 (336)
T ss_pred             CHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCEE
Confidence            3444444444444432   22233444 2344444444444444444443

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=85.43  E-value=26  Score=32.93  Aligned_cols=125  Identities=13%  Similarity=0.105  Sum_probs=76.3

Q ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC
Q psy9711          41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT  119 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s  119 (198)
                      .++..|..+|||+|+++....   +  ++++.++++ .+...++-+++=-.        +.+.+.+-.+ -+.|+||=.-
T Consensus       124 ~QI~ea~~~GADavLLI~~~L---~--~~~l~~l~~-~a~~lGme~LvEvh--------~~~el~~a~~~ga~iiGINnR  189 (695)
T PRK13802        124 YQIWEARAHGADLVLLIVAAL---D--DAQLKHLLD-LAHELGMTVLVETH--------TREEIERAIAAGAKVIGINAR  189 (695)
T ss_pred             HHHHHHHHcCCCEeehhHhhc---C--HHHHHHHHH-HHHHcCCeEEEEeC--------CHHHHHHHHhCCCCEEEEeCC
Confidence            355667789999999997653   2  555655554 55678887776321        2445555554 5689998765


Q ss_pred             -------CHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEeccccc-chHHHHHHHHHHHcCC
Q psy9711         120 -------DNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAV-LGGPICELYDLAKAGK  180 (198)
Q Consensus       120 -------d~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~~gd  180 (198)
                             |+....+++. ..+++..+.  +|..  ..+......|+||++-|.+-+ .|.+-..+.+...++.
T Consensus       190 dL~tf~vd~~~t~~L~~-~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~~  261 (695)
T PRK13802        190 NLKDLKVDVNKYNELAA-DLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAGA  261 (695)
T ss_pred             CCccceeCHHHHHHHHh-hCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhccc
Confidence                   6667777663 445554433  3433  234455678999999888744 2333344444444443

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=85.43  E-value=12  Score=29.69  Aligned_cols=72  Identities=4%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++.+.+.+   +.-+++..+..+.+...+..+...+.++|++++.+..   ..  .+.+.+   .+ +..++|+++
T Consensus        14 ~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~---~~--~~~~~~---~~-~~~~ipvV~   84 (269)
T cd06281          14 LAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD---ER--DPELVD---AL-ASLDLPIVL   84 (269)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC---CC--cHHHHH---HH-HhCCCCEEE
Confidence            344555555554   6667776666677777888888888899999997542   11  233333   32 335899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      ++.+
T Consensus        85 i~~~   88 (269)
T cd06281          85 LDRD   88 (269)
T ss_pred             Eecc
Confidence            9864

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=85.32  E-value=7.7  Score=35.59  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      +.+..++.++.+.++|+|.+.+.--. ...  ++.++.+.++.+-+..++||-+|
T Consensus       147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~-G~~--~P~~v~~lv~~lk~~~~~pi~~H  198 (582)
T TIGR01108       147 TLETYLDLAEELLEMGVDSICIKDMA-GIL--TPKAAYELVSALKKRFGLPVHLH  198 (582)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCC-CCc--CHHHHHHHHHHHHHhCCCceEEE
Confidence            46788889999999999977665433 333  38889999999988888888765

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=85.30  E-value=3  Score=33.64  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .++++.+.+.+++||+++=+-.+.++..++.+ ..+.|+|++++..-.|... .+.++..++++
T Consensus       179 ~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~igra~~~g~-~~~~~~~~~~~  240 (241)
T PRK14024        179 LELLREVCARTDAPVVASGGVSSLDDLRALAE-LVPLGVEGAIVGKALYAGA-FTLPEALAVVR  240 (241)
T ss_pred             HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhh-hccCCccEEEEeHHHHcCC-CCHHHHHHHhc
Confidence            45666666666999999887777888776643 2357999999998887654 35777766643

>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II

Probab=85.26  E-value=6.9  Score=34.57  Aligned_cols=174  Identities=14%  Similarity=0.025  Sum_probs=93.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCC-----CEEEEcCCCCcCCCCCHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGA-----NAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Ga-----d~v~~~~P~y~~~~~~~~~i~   72 (198)
                      ......+||......+++.+     +..+ .+.+++.++++.+++++.+++.|+     .++|+. ++....+     . 
T Consensus       198 q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~-~~~~G~~-----a-  270 (439)
T cd08211         198 QPFCPLKKVIPLVADAMRRAQDETGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVD-GYVAGPA-----A-  270 (439)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEEC-cccchHH-----H-
Confidence            34566789987666666655     4444 458887789999999999998876     877775 3332221     2 


Q ss_pred             HHHHHHHc-cCCCCEEEEeCCC--Cc----ccccCHHHHHHHHcC---CCEE-----EEeeC-CHHHHHHH-------Hh
Q psy9711          73 EHFISVAD-NSPIPVIIYNNTF--VT----NIDISVDTLVKLAHH---ENIR-----GVKDT-DNIKLANM-------AN  129 (198)
Q Consensus        73 ~y~~~i~~-~~~~pi~lYn~P~--~t----g~~l~~~~l~~L~~~---p~i~-----giK~s-d~~~~~~~-------~~  129 (198)
                        ++.+.+ ..++||..+-.-.  .+    ..-++..++.+|.++   +.+.     .=|.. +.....+.       .+
T Consensus       271 --l~~lr~~~~~l~IhaHrA~~ga~~r~~~~~Gis~~vl~kl~RLaGaD~~h~g~~~~Gk~~~~~~~~~~~~~~~~~~~~  348 (439)
T cd08211         271 --VTTARRRFPDQFLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASGIHTGTMGFGKMEGESSDKVIAYMIERDEAQ  348 (439)
T ss_pred             --HHHHHhhCCCcEEEecccccccccccccCCCccHHHHHHHHHhcCCCccccCCcccCCCCCCHHHHHhhhhhhhhhhc
Confidence              223332 3577777553211  01    123555566655432   2222     23444 32221111       10


Q ss_pred             hc--------CCCCeEEEecChh--hHHHHh-hcC-CCeEEecccccc--h-------HHHHHHHHHHHcC-CHHHHHH
Q psy9711         130 QT--------KDLNFSVFAGSAG--YLLSGL-LVG-CAGGINALSAVL--G-------GPICELYDLAKAG-KWEEAMK  186 (198)
Q Consensus       130 ~~--------~~~~~~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~--P-------~~~~~l~~~~~~g-d~~~A~~  186 (198)
                      ..        ..+-|.|.+|.-+  .+...+ ..| .|-++...+.++  |       +.+++-|+++.+| ..+++.+
T Consensus       349 ~~~~~q~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~G~~l~e~Ak  427 (439)
T cd08211         349 GPLFNQKWYGMKPTTPIISGGMNALRLPGFFENLGNGNVILTAGGGSFGHIDGPAAGAKSLRQAYDAWKQGVDVIEYAK  427 (439)
T ss_pred             CccccCcccCCCCceEecCCCCCHhHHHHHHHHhCCCCEEEEcCccccCCCCChHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence            10        1234777776443  233332 467 355554444442  2       5788888999888 4555443

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=85.05  E-value=4.7  Score=33.54  Aligned_cols=85  Identities=9%  Similarity=0.187  Sum_probs=55.2

Q ss_pred             HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      ++++.+++..++||+ ...|+-.+.+-+   +.+.++|+|++++..-.+...+  +....+.|......       ||. 
T Consensus       193 elL~ei~~~~~iPVV~~AeGGI~TPeda---a~vme~GAdgVaVGSaI~ks~d--P~~~akafv~ai~~-------~~~-  259 (293)
T PRK04180        193 ELVKEVAELGRLPVVNFAAGGIATPADA---ALMMQLGADGVFVGSGIFKSGD--PEKRARAIVEATTH-------YDD-  259 (293)
T ss_pred             HHHHHHHHhCCCCEEEEEeCCCCCHHHH---HHHHHhCCCEEEEcHHhhcCCC--HHHHHHHHHHHHHH-------cCC-
Confidence            456666665589997 566666443333   3334589999999988876665  87777777666542       443 


Q ss_pred             CCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711          93 FVTNIDISVDTLVKLAH-H-ENIRGVKDT  119 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~-~-p~i~giK~s  119 (198)
                              |+.+.+.++ + ....|+-.+
T Consensus       260 --------~~~~~~~s~~~~~~m~g~~~~  280 (293)
T PRK04180        260 --------PEVLAEVSKGLGEAMVGIDID  280 (293)
T ss_pred             --------HHHHHHHHcccccccCCCccc
Confidence                    567777773 4 356666554

>TIGR00587 nfo apurinic endonuclease (APN1)

Probab=85.00  E-value=20  Score=29.35  Aligned_cols=81  Identities=12%  Similarity=0.017  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC-CCCEEEEeCCCCcc-cccCHHHHHHHHc-
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS-PIPVIIYNNTFVTN-IDISVDTLVKLAH-  109 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~-~~pi~lYn~P~~tg-~~l~~~~l~~L~~-  109 (198)
                      +...+.++.|+.+|++.+.+.|.++....  .++.    .+.++.+.+.. ++++.+=|.|.... ..-+++.+.+|.+ 
T Consensus        88 ~~~~~~i~~A~~lga~~vv~H~G~~~~~~--~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~  165 (274)
T TIGR00587        88 DVLDEELKRCELLGIMLYNFHPGSALKCS--EEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV  165 (274)
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Confidence            34456667788999998888776654322  3333    33445555443 58888988875422 2237888888884 


Q ss_pred             C---CCEEEEeeC
Q psy9711         110 H---ENIRGVKDT  119 (198)
Q Consensus       110 ~---p~i~giK~s  119 (198)
                      +   |++.-+=|+
T Consensus       166 ~~~~~~lg~~lDt  178 (274)
T TIGR00587       166 IVDKRRIGVCLDT  178 (274)
T ss_pred             cCCCCceEEEEEh
Confidence            3   555444444

All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=84.90  E-value=3.1  Score=33.59  Aligned_cols=63  Identities=13%  Similarity=0.097  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      ...++..++..++|||+..|=.+..++.+    |.++|+|+|++-.-..-..+  +-.+-+-|+.-.++
T Consensus       164 ~~~l~~i~~~~~vPvIvDAGiG~pSdaa~----AMElG~daVLvNTAiA~A~d--Pv~MA~Af~~AV~A  226 (247)
T PF05690_consen  164 PYNLRIIIERADVPVIVDAGIGTPSDAAQ----AMELGADAVLVNTAIAKAKD--PVAMARAFKLAVEA  226 (247)
T ss_dssp             HHHHHHHHHHGSSSBEEES---SHHHHHH----HHHTT-SEEEESHHHHTSSS--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEEEeCCCCCHHHHHH----HHHcCCceeehhhHHhccCC--HHHHHHHHHHHHHH

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=84.88  E-value=2.6  Score=36.04  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT  103 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~  103 (198)
                      -++|++..+.++    ++.|.+.|+|.+.+. |.|..++   .++- -.++++.+++.+++|++--     .|  ++++.
T Consensus       241 ~iIG~S~Hs~~e----~~~A~~~GaDYI~lG-Pvf~T~tKp~~~~~-Gle~l~~~~~~~~iPv~Ai-----GG--I~~~n  307 (347)
T PRK02615        241 KIIGRSTTNPEE----MAKAIAEGADYIGVG-PVFPTPTKPGKAPA-GLEYLKYAAKEAPIPWFAI-----GG--IDKSN  307 (347)
T ss_pred             CEEEEecCCHHH----HHHHHHcCCCEEEEC-CCcCCCCCCCCCCC-CHHHHHHHHHhCCCCEEEE-----CC--CCHHH
Confidence            467888776554    466778899998887 4544322   1122 2578888888888998763     23  56788


Q ss_pred             HHHHHc
Q psy9711         104 LVKLAH  109 (198)
Q Consensus       104 l~~L~~  109 (198)
                      +.++.+
T Consensus       308 i~~l~~  313 (347)
T PRK02615        308 IPEVLQ  313 (347)
T ss_pred             HHHHHH
Confidence            888875

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=84.75  E-value=17  Score=28.53  Aligned_cols=78  Identities=10%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ++..=..++++.+.+++   +..++......+.++..+..+.+.+.++|++++.++.       .+...+.++.+. ..+
T Consensus         9 ~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~-------~~~~~~~l~~l~-~~~   80 (268)
T cd06323           9 LNNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTD-------SDAVVPAVKAAN-EAG   80 (268)
T ss_pred             ccCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHHH-HCC
Confidence            34444555666665555   6666666666678888888888888899999997532       222234445543 458


Q ss_pred             CCEEEEeCC
Q psy9711          84 IPVIIYNNT   92 (198)
Q Consensus        84 ~pi~lYn~P   92 (198)
                      +|++..+.+
T Consensus        81 ipvv~~~~~   89 (268)
T cd06323          81 IPVFTIDRE   89 (268)
T ss_pred             CcEEEEccC
Confidence            999988764

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=84.75  E-value=18  Score=30.86  Aligned_cols=129  Identities=12%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             HHHHHHHh-cCCeEEEe--CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          15 IISTLRQE-TKKTIIAG--TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        15 l~~~~~~~-~~~pvi~g--v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      -++.+.+. +.+||+.=  +-+      --++..|...|||+|+++.-..      +++-+.+|-.+|...++-+++=-.
T Consensus       171 ~L~~vr~~~v~lPvLrKDFIID------~yQI~eAr~~GADAVLLIaaiL------~~~~L~~l~~~A~~LGme~LVEVH  238 (338)
T PLN02460        171 NLEAIRNAGVKCPLLCKEFIVD------AWQIYYARSKGADAILLIAAVL------PDLDIKYMLKICKSLGMAALIEVH  238 (338)
T ss_pred             HHHHHHHcCCCCCEeeccccCC------HHHHHHHHHcCCCcHHHHHHhC------CHHHHHHHHHHHHHcCCeEEEEeC
Confidence            34455554 36676542  111      2355667789999999996653      344567777888889987775221


Q ss_pred             CCCcccccCHHHHHHHHcC--CCEEEEeeC-------CHHHHHHHHhh----cC-CCCeEEE--ecChh--hHHHHhhcC
Q psy9711          92 TFVTNIDISVDTLVKLAHH--ENIRGVKDT-------DNIKLANMANQ----TK-DLNFSVF--AGSAG--YLLSGLLVG  153 (198)
Q Consensus        92 P~~tg~~l~~~~l~~L~~~--p~i~giK~s-------d~~~~~~~~~~----~~-~~~~~v~--~G~d~--~~~~~l~~G  153 (198)
                              +.+.+.+-.+.  ..|+||=.-       |+....++...    .. +++..+.  +|..+  .+......|
T Consensus       239 --------~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G  310 (338)
T PLN02460        239 --------DEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG  310 (338)
T ss_pred             --------CHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC
Confidence                    24556555554  689999764       66766666631    12 2344333  34332  344455789


Q ss_pred             CCeEEecccc
Q psy9711         154 CAGGINALSA  163 (198)
Q Consensus       154 ~~G~is~~~n  163 (198)
                      ++|++-|.+-
T Consensus       311 adAvLVGEsL  320 (338)
T PLN02460        311 VKAVLVGESL  320 (338)
T ss_pred             CCEEEECHHH
Confidence            9999988763

>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family

Probab=84.64  E-value=20  Score=29.06  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHHHHHHHHHccCCCCEEEEeCCCCccc-ccCHHHHHHHHcCCC-
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEHFISVADNSPIPVIIYNNTFVTNI-DISVDTLVKLAHHEN-  112 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~-~l~~~~l~~L~~~p~-  112 (198)
                      +-+-+.++.|.+.|+|.++.--|.+++|-  .+.+......+.+. .-++.++-+|.|.-... .++ +.+.+.....+ 
T Consensus        44 D~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li-~~~I~vy~~Ht~lD~~~~G~n-~~La~~Lgl~~~  121 (249)
T TIGR00486        44 DASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILL-QNDISLYSAHTNLDAHDGGNN-DALARALGLENP  121 (249)
T ss_pred             cCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHH-HCCCeEEEeecchhcCCCCHH-HHHHHHcCCCcc
Confidence            33445556777889999999999988762  11222233344433 35788888886643211 122 23444432211 


Q ss_pred             ---------EEEEe-eC-CHHHHHHHHhhcC--------C------CCeEEEecChhh-HHHHhhcCCCeEEecccc
Q psy9711         113 ---------IRGVK-DT-DNIKLANMANQTK--------D------LNFSVFAGSAGY-LLSGLLVGCAGGINALSA  163 (198)
Q Consensus       113 ---------i~giK-~s-d~~~~~~~~~~~~--------~------~~~~v~~G~d~~-~~~~l~~G~~G~is~~~n  163 (198)
                               ++|-- .. +...+.+.+++..        +      .++.+.+|.... +..+...|+|-+++|=..
T Consensus       122 ~~~~~~g~G~vg~l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k  198 (249)
T TIGR00486       122 KEFEDYGLGRVGEFKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLS  198 (249)
T ss_pred             ccccCCCceeEEECCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCc
Confidence                     22222 22 4444333222110        0      247777787764 446678899999998653

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=84.55  E-value=3.4  Score=33.29  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      +++-+.++.+.+.|-|++|+.---    ..+.+.+.+-.+.|.+.+++|++++-
T Consensus        28 ~~~~ei~~~~~~~GTDaImIGGS~----gvt~~~~~~~v~~ik~~~~lPvilfP   77 (240)
T COG1646          28 EEADEIAEAAAEAGTDAIMIGGSD----GVTEENVDNVVEAIKERTDLPVILFP   77 (240)
T ss_pred             cccHHHHHHHHHcCCCEEEECCcc----cccHHHHHHHHHHHHhhcCCCEEEec
Confidence            678888999999999999997432    23478899999999999999999974

>PRK10799 metal-binding protein; Provisional

Probab=84.46  E-value=9.8  Score=30.80  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccCCCCEEEEeCCCCccc--ccCHHHHHHHHcCCC
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNSPIPVIIYNNTFVTNI--DISVDTLVKLAHHEN  112 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~~~pi~lYn~P~~tg~--~l~~~~l~~L~~~p~  112 (198)
                      +.+-.+.|.+.|+|.++.--|.++++.  ..-..    +-++.+. ..++.++-+|.|.-...  .++.. +.+.....+
T Consensus        45 t~~vi~~A~~~~~dlIitHHP~~~~~~--~~~~~~~~~~~~~~li-~~~i~vy~~Htn~D~~~~~G~n~~-la~~Lgl~~  120 (247)
T PRK10799         45 SQALLDEAVRLQADAVIVHHGYFWKGE--SPVIRGMKRNRLKTLL-ANDINLYGWHLPLDAHPELGNNAQ-LAALLGITV  120 (247)
T ss_pred             CHHHHHHHHHCCCCEEEECCchhccCC--CccccchHHHHHHHHH-HCCCeEEEEecchhhCCCCCHHHH-HHHHcCCCc
Confidence            355567788889999999999988764  22121    2222333 24788888887654322  12223 333332221


Q ss_pred             --------EEEEe-eC-CHHHHHHHHhhc----------CC----CCeEEEecChhh-HHHHhhcCCCeEEeccc
Q psy9711         113 --------IRGVK-DT-DNIKLANMANQT----------KD----LNFSVFAGSAGY-LLSGLLVGCAGGINALS  162 (198)
Q Consensus       113 --------i~giK-~s-d~~~~~~~~~~~----------~~----~~~~v~~G~d~~-~~~~l~~G~~G~is~~~  162 (198)
                              .+|-- .. +...+.+.+++.          ..    .++.+.+|.... +..+...|+|-+++|=.
T Consensus       121 ~~~~~~~~~~g~l~~~~s~~~l~~~vk~~l~~~~~~~~~~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~  195 (247)
T PRK10799        121 MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEV  195 (247)
T ss_pred             ccCcCCceeeEECCCCcCHHHHHHHHHHHhCCCeEEECCCCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCc
Confidence                    11221 12 444444333210          00    347778887664 44556789999998864

>PRK08999 hypothetical protein; Provisional

Probab=84.36  E-value=5.8  Score=33.01  Aligned_cols=77  Identities=18%  Similarity=0.325  Sum_probs=48.3

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHH
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV  105 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~  105 (198)
                      ++|++..+.++    ++.|.+.|+|.+.+.| .|...+.  .+.-=.+.++.+++.+++||+.     -.|  ++++.+.
T Consensus       228 ~ig~S~h~~~~----~~~a~~~~~dyi~~gp-vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~A-----iGG--I~~~~~~  295 (312)
T PRK08999        228 WVAASCHDAEE----LARAQRLGVDFAVLSP-VQPTASHPGAAPLGWEGFAALIAGVPLPVYA-----LGG--LGPGDLE  295 (312)
T ss_pred             EEEEecCCHHH----HHHHHhcCCCEEEECC-CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE-----ECC--CCHHHHH
Confidence            55666665554    4566778999988865 4433221  1111246778888888899886     233  6788888


Q ss_pred             HHHcC--CCEEEE
Q psy9711         106 KLAHH--ENIRGV  116 (198)
Q Consensus       106 ~L~~~--p~i~gi  116 (198)
                      ++.+.  ..|.++
T Consensus       296 ~~~~~g~~gva~i  308 (312)
T PRK08999        296 EAREHGAQGIAGI  308 (312)
T ss_pred             HHHHhCCCEEEEE
Confidence            88754  444443

>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs

Probab=84.29  E-value=19  Score=28.62  Aligned_cols=76  Identities=8%  Similarity=-0.024  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +..-..++++.+.+++   +..+++.. +..+.+...+..+...+.++|++++.|..       .+...+.++.+. + +
T Consensus         9 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~-------~~~~~~~l~~~~-~-~   79 (271)
T cd06314           9 ASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPID-------PKAVIPALNKAA-A-G   79 (271)
T ss_pred             CcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-------hhHhHHHHHHHh-c-C
Confidence            3445566777666666   66776654 33466777788888889999999998632       222234555554 4 8


Q ss_pred             CCEEEEeCC
Q psy9711          84 IPVIIYNNT   92 (198)
Q Consensus        84 ~pi~lYn~P   92 (198)
                      +|+++.+.+
T Consensus        80 ipvV~~~~~   88 (271)
T cd06314          80 IKLITTDSD   88 (271)
T ss_pred             CCEEEecCC
Confidence            999999864

Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).

>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed

Probab=84.28  E-value=30  Score=31.93  Aligned_cols=112  Identities=19%  Similarity=0.167  Sum_probs=70.9

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      +.+|-+.+++.+.+...+|+|+.++-         .+.+++++.+   .+.|++++.+-.-.      .++.+....+.+
T Consensus       149 ~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~---~~~~~~avGiNC~~------~p~~~~~~l~~l  219 (612)
T PRK08645        149 DLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKEL---VAAGADVVGLNCGL------GPYHMLEALERI  219 (612)
T ss_pred             CHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHH---HhCCCCEEEecCCC------CHHHHHHHHHHH
Confidence            56777777777765435898887642         2245555555   35678777765321      166777777777


Q ss_pred             HccCCCCEEEEeCCCCc-------ccccCHHHHHHHH----cC-CCEEEEeeC-CHHHHHHHH
Q psy9711          79 ADNSPIPVIIYNNTFVT-------NIDISVDTLVKLA----HH-ENIRGVKDT-DNIKLANMA  128 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~t-------g~~l~~~~l~~L~----~~-p~i~giK~s-d~~~~~~~~  128 (198)
                      ...+++|+++|-|.+..       ....+++.+.+.+    +. -+|+|=-.. ++.+++++.
T Consensus       220 ~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la  282 (612)
T PRK08645        220 PIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMA  282 (612)
T ss_pred             HhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHH
Confidence            77678999999874431       1234666665554    22 478887777 777766654

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=84.23  E-value=12  Score=31.01  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .-...+++-+.+++   +..++......+.++..+..+.....++||+++.+..   .+  + +.+   +.+.+..++|+
T Consensus        72 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---~~--~-~~~---~~l~~~~~iPv  142 (341)
T PRK10703         72 PYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSE---YP--E-PLL---AMLEEYRHIPM  142 (341)
T ss_pred             chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC---CC--H-HHH---HHHHhcCCCCE
Confidence            34455555555555   6667766666677777888888888899999987652   12  3 232   33333368999


Q ss_pred             EEEeCC
Q psy9711          87 IIYNNT   92 (198)
Q Consensus        87 ~lYn~P   92 (198)
                      +++|.+
T Consensus       143 V~~d~~  148 (341)
T PRK10703        143 VVMDWG  148 (341)
T ss_pred             EEEecc
Confidence            999863

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]

Probab=84.12  E-value=4.2  Score=32.72  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=47.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALI   56 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~   56 (198)
                      +-.+--+.+|-.++++.+++.- + ||..|+..+.-+.=+++=+.|..+|+|++--
T Consensus       197 ~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~  251 (275)
T COG1856         197 GNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITF  251 (275)
T ss_pred             cCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCceeec
Confidence            3445568899999999999988 7 9999999988899999999999999998754

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=84.09  E-value=27  Score=30.19  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      ++|.++    ++..++..++|||+ ||.+      .+-++.+.++|+|++.+..-
T Consensus       210 ~~tW~d----i~wlr~~~~~PiivKgV~~------~~dA~~a~~~Gvd~I~Vsnh  254 (367)
T PLN02493        210 TLSWKD----VQWLQTITKLPILVKGVLT------GEDARIAIQAGAAGIIVSNH  254 (367)
T ss_pred             CCCHHH----HHHHHhccCCCEEeecCCC------HHHHHHHHHcCCCEEEECCC
Confidence            455554    33333334899988 7753      56677889999999999854

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=84.08  E-value=17  Score=30.96  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEE-----eCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIA-----GTYCESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~-----gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ..+|.+|-...++.++..++.|+++     |....+.+++++.+.+. ++.||++|=+-.-        ..+..+-.+.+
T Consensus        76 ~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg--------~~~~~~~I~~l  147 (332)
T PLN02424         76 LPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGG--------SPSRVTAAKAI  147 (332)
T ss_pred             CCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCC--------cHHHHHHHHHH
Confidence            3578999999999888877666655     33445789999999988 6799999987421        25567778888


Q ss_pred             HccCCCCEEE
Q psy9711          79 ADNSPIPVII   88 (198)
Q Consensus        79 ~~~~~~pi~l   88 (198)
                      . ..++||+=
T Consensus       148 ~-~~GIPV~g  156 (332)
T PLN02424        148 V-EAGIAVMG  156 (332)
T ss_pred             H-HcCCCEEE
Confidence            8 67999993

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=84.07  E-value=10  Score=32.06  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHHc
Q psy9711          10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVAD   80 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~~   80 (198)
                      +...++++.+.+.. .+||++|..     .+.+.++.+.++|||++.+. .|.....+       ..+-..+.-..+.++
T Consensus       120 ~~~~~~i~~ik~~~p~v~Vi~G~v-----~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~  194 (325)
T cd00381         120 VYVIEMIKFIKKKYPNVDVIAGNV-----VTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR  194 (325)
T ss_pred             HHHHHHHHHHHHHCCCceEEECCC-----CCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh
Confidence            45566777777665 588887444     23455677778999999873 23221100       012233333444455


Q ss_pred             cCCCCEE
Q psy9711          81 NSPIPVI   87 (198)
Q Consensus        81 ~~~~pi~   87 (198)
                      ..++||+
T Consensus       195 ~~~vpVI  201 (325)
T cd00381         195 DYGVPVI  201 (325)
T ss_pred             hcCCcEE
Confidence            5578987

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=83.94  E-value=5  Score=33.92  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCC-CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--C-----
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKM-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--E-----  111 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~-~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p-----  111 (198)
                      ++.++.+.+.|+|++++..+--..... +......-...+.+..++||+.     ..| -.+...+......  .     
T Consensus       146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia-----AGG-I~dg~~iaaal~lGA~gV~~G  219 (330)
T PF03060_consen  146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA-----AGG-IADGRGIAAALALGADGVQMG  219 (330)
T ss_dssp             HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEE-----ESS---SHHHHHHHHHCT-SEEEES
T ss_pred             HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEE-----ecC-cCCHHHHHHHHHcCCCEeecC
Confidence            566788899999999998664221110 1225889999999999999997     333 3455544433322  1     


Q ss_pred             -CEEEEeeC-CHHHHHHHHhhcCCCCeEE
Q psy9711         112 -NIRGVKDT-DNIKLANMANQTKDLNFSV  138 (198)
Q Consensus       112 -~i~giK~s-d~~~~~~~~~~~~~~~~~v  138 (198)
                       .+..-+++ -...+++.+.+....+..+
T Consensus       220 TrFl~t~Es~~~~~~K~~l~~a~~~dtv~  248 (330)
T PF03060_consen  220 TRFLATEESGASDAYKQALVDATEEDTVL  248 (330)
T ss_dssp             HHHHTSTTS-S-HHHHHHHHHGGTT-EEE
T ss_pred             CeEEecccccChHHHHHHHHhCCCCCEEE
Confidence             23344555 3344444443344455444

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=83.90  E-value=20  Score=28.45  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY   60 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~   60 (198)
                      .++++.+++.+++||++|-+-.+.+++.++    .+.|++.+++-.-.
T Consensus        63 ~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~----~~~G~~~vilg~~~  106 (232)
T TIGR03572        63 FELISNLAEECFMPLTVGGGIRSLEDAKKL----LSLGADKVSINTAA  106 (232)
T ss_pred             HHHHHHHHHhCCCCEEEECCCCCHHHHHHH----HHcCCCEEEEChhH
Confidence            456777776668999998888777766653    45699999887444

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=83.89  E-value=14  Score=28.68  Aligned_cols=74  Identities=5%  Similarity=0.064  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      ..-+..+.+-+.+++   +..++......+..+.++..+.+.+.|+|++++.+..   ++  .  ..  .+. +...++|
T Consensus        11 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~---~~--~--~~--~~~-~~~~~ip   80 (264)
T cd06267          11 NPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR---LD--D--EL--LEE-LAALGIP   80 (264)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC---cc--h--HH--HHH-HHHcCCC
Confidence            334455555555555   6777777777777788888988988899999986543   11  1  11  333 4567899


Q ss_pred             EEEEeCC
Q psy9711          86 VIIYNNT   92 (198)
Q Consensus        86 i~lYn~P   92 (198)
                      ++..+.+
T Consensus        81 vv~~~~~   87 (264)
T cd06267          81 VVLVDRP   87 (264)
T ss_pred             EEEeccc
Confidence            9998875

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=83.86  E-value=15  Score=29.34  Aligned_cols=73  Identities=10%  Similarity=0.107  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ...+++.+.+++   +.-++...+..+.++-.+..+.+.+.++|++++.+..       .+.+.+..+.+. ..++|+++
T Consensus        14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~-------~~~~~~~i~~~~-~~~iPvV~   85 (282)
T cd06318          14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVD-------PEGLVPAVAAAK-AAGVPVVV   85 (282)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------ccchHHHHHHHH-HCCCCEEE
Confidence            344555555555   6666665555677777788888999999999987532       122223344443 46899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        86 ~~~~   89 (282)
T cd06318          86 VDSS   89 (282)
T ss_pred             ecCC
Confidence            9964

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=83.82  E-value=19  Score=32.33  Aligned_cols=81  Identities=14%  Similarity=0.001  Sum_probs=58.1

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..|.+|-.+.+..+++.+   +..|..+.   +..+.+..++.++.+.++|++.+.+.- .....  +|+++.+.++.+.
T Consensus       109 ~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D-TvG~~--~P~~~~~~i~~l~  185 (494)
T TIGR00973       109 KMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPD-TVGYA--LPAEYGNLIKGLR  185 (494)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC-CCCCC--CHHHHHHHHHHHH
Confidence            456777777666666666   55566554   445678999999999999999766643 33333  3999999999998


Q ss_pred             ccCC----CCEEEE
Q psy9711          80 DNSP----IPVIIY   89 (198)
Q Consensus        80 ~~~~----~pi~lY   89 (198)
                      +..+    +|+-+|
T Consensus       186 ~~~~~~~~v~l~~H  199 (494)
T TIGR00973       186 ENVPNIDKAILSVH  199 (494)
T ss_pred             HhhccccCceEEEE
Confidence            8763    556664

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=83.77  E-value=16  Score=28.98  Aligned_cols=72  Identities=11%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .++++.+.+++   +..++...+..+.+...+..+.+...++|++++.++.       +....+.++.+ ...++|++..
T Consensus        15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~-------~~~~~~~i~~~-~~~~ipvV~~   86 (273)
T cd06305          15 QAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGR-------AEVLKPWVKRA-LDAGIPVVAF   86 (273)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------hhhhHHHHHHH-HHcCCCEEEe
Confidence            34444444444   6666665566677777888888888899999997643       11122334444 3468999999


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      |.+
T Consensus        87 ~~~   89 (273)
T cd06305          87 DVD   89 (273)
T ss_pred             cCC
Confidence            863

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=83.74  E-value=18  Score=28.39  Aligned_cols=73  Identities=10%  Similarity=0.096  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .-..++++.+.+++   +..++...+..+.++..+..+.....++|++++.++.   .   .+.+   ++.+ ...++|+
T Consensus        12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~---~---~~~~---~~~~-~~~~ipv   81 (259)
T cd01542          12 FSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT---I---TDEH---REAI-KKLNVPV   81 (259)
T ss_pred             chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC---C---CHHH---HHHH-hcCCCCE
Confidence            33455666665555   6667666666677778888888888999999998653   1   2222   2333 3357999


Q ss_pred             EEEeCC
Q psy9711          87 IIYNNT   92 (198)
Q Consensus        87 ~lYn~P   92 (198)
                      ++++.+
T Consensus        82 v~~~~~   87 (259)
T cd01542          82 VVVGQD   87 (259)
T ss_pred             EEEecc
Confidence            999875

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=83.74  E-value=11  Score=29.61  Aligned_cols=88  Identities=20%  Similarity=0.158  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC-CCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK-MTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~-~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      +-.++++.+.+..++++++++.  +.++    ++.+.++|+|.+.+.+--+...+ .+...-.++.+.+.+.+++|++. 
T Consensus       110 ~~~~~i~~~~~~g~~~iiv~v~--t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia-  182 (219)
T cd04729         110 TLAELIKRIHEEYNCLLMADIS--TLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA-  182 (219)
T ss_pred             CHHHHHHHHHHHhCCeEEEECC--CHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE-
Confidence            4445555554442467766654  2333    35566778777654321111100 00112235666676666777664 


Q ss_pred             eCCCCcccccCHHHHHHHHcC
Q psy9711          90 NNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        90 n~P~~tg~~l~~~~l~~L~~~  110 (198)
                           .|---+++.+.++.+.
T Consensus       183 -----~GGI~~~~~~~~~l~~  198 (219)
T cd04729         183 -----EGRINSPEQAAKALEL  198 (219)
T ss_pred             -----eCCCCCHHHHHHHHHC
Confidence                 2212256666666543

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional

Probab=83.71  E-value=18  Score=30.28  Aligned_cols=78  Identities=9%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ++.+=+.++++-+.+++   +.-++...+..+.+...+..+...+.++|++++.+..       .+...++.+.+ ...+
T Consensus        35 ~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~-------~~~~~~~l~~~-~~~~  106 (330)
T PRK10355         35 LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN-------GQVLSNVIKEA-KQEG  106 (330)
T ss_pred             CCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhhHHHHHHHH-HHCC
Confidence            34444556666665555   6777777666677778888888889999999997421       22233445554 3567


Q ss_pred             CCEEEEeCC
Q psy9711          84 IPVIIYNNT   92 (198)
Q Consensus        84 ~pi~lYn~P   92 (198)
                      +|+++.|.+
T Consensus       107 iPvV~id~~  115 (330)
T PRK10355        107 IKVLAYDRM  115 (330)
T ss_pred             CeEEEECCC
Confidence            999999865

>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins

Probab=83.59  E-value=7.2  Score=34.40  Aligned_cols=62  Identities=6%  Similarity=0.133  Sum_probs=44.1

Q ss_pred             CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ...|+. +....+.+++.+.++.+.+.++|++++..+.|..    ...+...    +...+.|+++++.|.
T Consensus        36 ~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~----~~~~~~~----~~~~~~Pvll~a~~~   98 (452)
T cd00578          36 PVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP----AKMWIAG----LSELRKPVLLLATQF   98 (452)
T ss_pred             CceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc----HHHHHHH----HHhcCCCEEEEeCCC
Confidence            445433 3333478888888888888899999998888764    3333333    445689999999876

FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=83.57  E-value=7.8  Score=30.99  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHH---HHHccCCCCEEEEeCCCCcccccCHHHHHH
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFI---SVADNSPIPVIIYNNTFVTNIDISVDTLVK  106 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~---~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~  106 (198)
                      |..|.++++++++.|.+.|+.-++..|-++ .+..  +.+.+..-+.   .+...-.+|+-++-  + .-+.++.+++..
T Consensus        15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~-~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~p--G-QEIrIt~~vl~~   90 (254)
T COG4464          15 GPKSLEESLAMLREAVRQGVTKIVATSHHL-HGRYENPIEKVKEKANQLNEILKKEAIDLKVLP--G-QEIRITGDVLDD   90 (254)
T ss_pred             CCCcHHHHHHHHHHHHHcCceEEeeccccc-CCccCChHHHHHHHHHHHHHHHHhhcCCceecc--C-ceEEEchHHHHH
Confidence            778899999999999999999887765443 3221  2555555444   44444467777753  2 445678888888


Q ss_pred             HHc--CCCEEEEe
Q psy9711         107 LAH--HENIRGVK  117 (198)
Q Consensus       107 L~~--~p~i~giK  117 (198)
                      |.+  ++.+.--|
T Consensus        91 l~~g~I~tindsk  103 (254)
T COG4464          91 LDKGIILTINDSK  103 (254)
T ss_pred             HhcCccccccccc
Confidence            873  44444333

>TIGR03884 sel_bind_Methan selenium-binding protein

Probab=83.57  E-value=2.7  Score=27.50  Aligned_cols=30  Identities=13%  Similarity=0.257  Sum_probs=23.7

Q ss_pred             EEEeCCCCcHHHHH-HHHHHHHhcCCCEEEEc
Q psy9711          27 IIAGTYCESTRATI-DLTQKAAKAGANAALIL   57 (198)
Q Consensus        27 vi~gv~~~~~~~~i-~~a~~a~~~Gad~v~~~   57 (198)
                      |+.+.++ +.++++ ++.++|+++||++++-+
T Consensus        19 iv~~~~~-d~d~Al~eM~e~A~~lGAnAVVGv   49 (74)
T TIGR03884        19 IVSTESD-NVDEIVENLREKVKAKGGMGLIAF   49 (74)
T ss_pred             EEEEecC-CHHHHHHHHHHHHHHcCCCEEEEE
Confidence            5667777 777776 56788999999999876

This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=83.49  E-value=6.5  Score=32.01  Aligned_cols=47  Identities=21%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ   63 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~   63 (198)
                      ++++.+.+..++||+++=|-.+.++..++.+   +.|++++++..++++.
T Consensus       186 ~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~---~~GvdgVivg~a~~~~  232 (258)
T PRK01033        186 ELLKSFRNALKIPLIALGGAGSLDDIVEAIL---NLGADAAAAGSLFVFK  232 (258)
T ss_pred             HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH---HCCCCEEEEcceeeeC
Confidence            4555555555999999888777888776643   4599999999999886

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=83.47  E-value=23  Score=28.95  Aligned_cols=89  Identities=15%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHH-ccCCCCEE--E
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVA-DNSPIPVI--I   88 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~-~~~~~pi~--l   88 (198)
                      ++-.|.++.+.+++.++...+.|||.+=+.-|+-.+..                .+-+++++..+++. +..+.|++  -
T Consensus        17 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~   96 (258)
T PRK13111         17 YITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT   96 (258)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            44578899999999999999999999999999844321                12446666777776 44567744  5


Q ss_pred             EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      |-+|-.   ....+-+.+-++.-.+.|+-..
T Consensus        97 Y~N~i~---~~G~e~f~~~~~~aGvdGviip  124 (258)
T PRK13111         97 YYNPIF---QYGVERFAADAAEAGVDGLIIP  124 (258)
T ss_pred             cccHHh---hcCHHHHHHHHHHcCCcEEEEC
Confidence            556642   2233333333322245555544

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=83.44  E-value=8.1  Score=30.56  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=0.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHh------------------c------CCeEEEeCC----CCcHHHHHHHHHHHHhcCCCE
Q psy9711           2 SNSFKSTEEEKLKIISTLRQE------------------T------KKTIIAGTY----CESTRATIDLTQKAAKAGANA   53 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~------------------~------~~pvi~gv~----~~~~~~~i~~a~~a~~~Gad~   53 (198)
                      |-.+.+|+++|.++++.+.+.                  .      +.+||+.--    ..+.++..+..+.+++.|+|.
T Consensus        67 GG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadi  146 (224)
T PF01487_consen   67 GGRFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADI  146 (224)
T ss_dssp             TSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SE
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCe


Q ss_pred             EEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          54 ALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        54 v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      +=+..+.-....  -..+.+..+..-+..+.|++.++
T Consensus       147 vKia~~~~~~~D--~~~l~~~~~~~~~~~~~p~i~~~  181 (224)
T PF01487_consen  147 VKIAVMANSPED--VLRLLRFTKEFREEPDIPVIAIS  181 (224)
T ss_dssp             EEEEEE-SSHHH--HHHHHHHHHHHHHHTSSEEEEEE
T ss_pred             EEEEeccCCHHH--HHHHHHHHHHHhhccCCcEEEEE

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>PLN02428 lipoic acid synthase

Probab=83.27  E-value=12  Score=32.03  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711           6 KSTEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      ..+.+++.++++.+.+..     +.-+|+|.| .+.+|.++.++.+.++|+|.+.+.
T Consensus       227 ~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLG-ET~Edv~e~l~~Lrelgvd~vtig  282 (349)
T PLN02428        227 RAGYKQSLDVLKHAKESKPGLLTKTSIMLGLG-ETDEEVVQTMEDLRAAGVDVVTFG  282 (349)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCeEEEeEEEecC-CCHHHHHHHHHHHHHcCCCEEeec
Confidence            357788889998888873     456788984 688999999999999999987663

>PRK13475 ribulose bisphosphate carboxylase; Provisional

Probab=83.23  E-value=10  Score=33.63  Aligned_cols=173  Identities=14%  Similarity=0.068  Sum_probs=92.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhc-CCC----EEEEcCCCCcCCCCCHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKA-GAN----AALILCPYYFQKKMTEDLI   71 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~-Gad----~v~~~~P~y~~~~~~~~~i   71 (198)
                      .......+||......+++.+     +..+ .+.+++.++++.+++++.+++. |++    ++|+ .++....+     .
T Consensus       198 ~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vmv-~~~~~G~~-----a  271 (443)
T PRK13475        198 NQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANITADDHYEMIARGEYILETFGENADHVAFLV-DGYVAGPG-----A  271 (443)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCCCCCHHHHHHHHHHHHHhcCCCccceEEEE-cCccchHH-----H
Confidence            345667889988777777666     3344 4578877899999999999998 988    4554 44433322     2


Q ss_pred             HHHHHHHHc-cCCCCEEEEeCCC------CcccccCHHHHHHHHc---CCC-----EEEEeeC-CHHHHHHH-------H
Q psy9711          72 YEHFISVAD-NSPIPVIIYNNTF------VTNIDISVDTLVKLAH---HEN-----IRGVKDT-DNIKLANM-------A  128 (198)
Q Consensus        72 ~~y~~~i~~-~~~~pi~lYn~P~------~tg~~l~~~~l~~L~~---~p~-----i~giK~s-d~~~~~~~-------~  128 (198)
                         .+.+++ ..++||..+-.-.      ....-++.-++.+|.+   .+.     +-.=|.. +.......       .
T Consensus       272 ---l~~lr~~~~~l~ihaHrA~~ga~~r~~~~~Gis~~vl~Kl~RLaGaD~ih~gt~g~gk~~~~~~~~~~~~~~~~~~~  348 (443)
T PRK13475        272 ---VTTARRQYPDQYLHYHRAGHGAVTSPSSKRGYTAFVLSKMARLQGASGIHTGTMGYGKMEGEADDRVIAYMIERDSA  348 (443)
T ss_pred             ---HHHHHhcCCCcEEEeccccchhhhcCCCCCCEeHHHHHHHHHHcCCCccccCCcccCCCCCCHHHHHHhhhhhhhhh
Confidence               223333 3577776553211      0112344455555543   122     2133665 32221111       1


Q ss_pred             hhc--------CCCCeEEEecChh-hHHHHh--hcC-CCeEEecccccc--h-------HHHHHHHHHHHcC-CHHHH
Q psy9711         129 NQT--------KDLNFSVFAGSAG-YLLSGL--LVG-CAGGINALSAVL--G-------GPICELYDLAKAG-KWEEA  184 (198)
Q Consensus       129 ~~~--------~~~~~~v~~G~d~-~~~~~l--~~G-~~G~is~~~n~~--P-------~~~~~l~~~~~~g-d~~~A  184 (198)
                      +..        ..+-+.|.+|.-+ ..++.+  ..| .|-++...+.++  |       ..+++-|+++++| +.+++
T Consensus       349 ~~~~~~q~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHp~G~aaGa~A~rqA~ea~~~G~~l~e~  426 (443)
T PRK13475        349 QGPFYHQEWYGMKPTTPIISGGMNALRLPGFFDNLGHGNVINTAGGGAFGHIDGPAAGAKSLRQAYDCWKAGADPIEY  426 (443)
T ss_pred             cCccccCcccCCCCceEecCCCCCHhHHHHHHHHhCCCCEEEEcCccccCCCCChHHHHHHHHHHHHHHHcCCCHHHH
Confidence            000        1234667766443 233333  467 355544444442  2       5778888888888 44443

>PRK09875 putative hydrolase; Provisional

Probab=83.18  E-value=7.3  Score=32.51  Aligned_cols=49  Identities=10%  Similarity=0.023  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCC--CEEEEcC
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGA--NAALILC   58 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Ga--d~v~~~~   58 (198)
                      +|+.|++ ++++++++.   ++||+.+++..+  ...++++.+++.|+  +.+++.-
T Consensus       133 it~~E~k-vl~Aaa~a~~~TG~pi~~Ht~~~~--~g~e~l~il~e~Gvd~~rvvi~H  186 (292)
T PRK09875        133 ITPLEEK-VFIAAALAHNQTGRPISTHTSFST--MGLEQLALLQAHGVDLSRVTVGH  186 (292)
T ss_pred             CCHHHHH-HHHHHHHHHHHHCCcEEEcCCCcc--chHHHHHHHHHcCcCcceEEEeC
Confidence            4555543 333333333   566665544321  44444555555555  4444443

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=83.16  E-value=27  Score=29.52  Aligned_cols=151  Identities=14%  Similarity=0.149  Sum_probs=99.3

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCC--CcCCC------CCHHHHHHHHHHHHccCC-CCEEEEeCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPY--YFQKK------MTEDLIYEHFISVADNSP-IPVIIYNNT   92 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~--y~~~~------~~~~~i~~y~~~i~~~~~-~pi~lYn~P   92 (198)
                      ..|+.+++++.+.+...+-++.+++.|+|.+=+-  .|.  -.+-.      .+++-+.+-.+++.++++ +||-+=-  
T Consensus        66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKi--  143 (323)
T COG0042          66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKI--  143 (323)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEE--
Confidence            5689999999999999999999999999987665  343  11100      358999999999999995 9998865  


Q ss_pred             CCccccc---CHHHHHHHHc-C--C--CEEEEe----eC---CHHHHHHHHhhcCCCCeEEE-ecC--h-hhHHHHhh-c
Q psy9711          93 FVTNIDI---SVDTLVKLAH-H--E--NIRGVK----DT---DNIKLANMANQTKDLNFSVF-AGS--A-GYLLSGLL-V  152 (198)
Q Consensus        93 ~~tg~~l---~~~~l~~L~~-~--p--~i~giK----~s---d~~~~~~~~~~~~~~~~~v~-~G~--d-~~~~~~l~-~  152 (198)
                       |.|.+-   ....+.+.++ -  .  .|.|=+    .+   |++.+.++.+ ..++ +.|+ +|+  + +.....+. .
T Consensus       144 -RlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~-~~~~-ipvi~NGdI~s~~~a~~~l~~t  220 (323)
T COG0042         144 -RLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKE-AVPS-IPVIANGDIKSLEDAKEMLEYT  220 (323)
T ss_pred             -ecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHH-hCCC-CeEEeCCCcCCHHHHHHHHHhh
Confidence             455432   2344555553 2  1  233333    22   6777777663 3333 4444 443  1 12334454 5


Q ss_pred             CCCeEEeccccc-chHHHHHHHHHHHcCC
Q psy9711         153 GCAGGINALSAV-LGGPICELYDLAKAGK  180 (198)
Q Consensus       153 G~~G~is~~~n~-~P~~~~~l~~~~~~gd  180 (198)
                      |+||++.|=+.+ .|.++.++ +....|.
T Consensus       221 g~DgVMigRga~~nP~l~~~i-~~~~~g~  248 (323)
T COG0042         221 GADGVMIGRGALGNPWLFRQI-DYLETGE  248 (323)
T ss_pred             CCCEEEEcHHHccCCcHHHHH-HHhhcCC
Confidence            799999887765 58888887 6666665

>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=83.13  E-value=28  Score=29.74  Aligned_cols=96  Identities=11%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCC-----------------HHHHHHHHHHHH--
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMT-----------------EDLIYEHFISVA--   79 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~-----------------~~~i~~y~~~i~--   79 (198)
                      |.-||+| ++-.+.+.+++.|+..+++|..    .+.++--|++||--+                 -++=+.+.+.+.  
T Consensus        48 rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll~~  127 (344)
T TIGR00034        48 RLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLLLD  127 (344)
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHHHH
Confidence            7788888 7777889999999999999874    445556666676211                 245566777775  


Q ss_pred             -ccCCCCEEEEe-CCCCc------------c-cccCHHHHHHHH-cCCCEEEEeeC
Q psy9711          80 -DNSPIPVIIYN-NTFVT------------N-IDISVDTLVKLA-HHENIRGVKDT  119 (198)
Q Consensus        80 -~~~~~pi~lYn-~P~~t------------g-~~l~~~~l~~L~-~~p~i~giK~s  119 (198)
                       ...++|+.-=- .|...            | .+....+.++++ ...-=||+|.+
T Consensus       128 i~~~GlPvatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKng  183 (344)
T TIGR00034       128 LVNLGLPIAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNG  183 (344)
T ss_pred             HHHhCCCeEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCC
Confidence             67789987311 11100            1 122234667888 58889999999

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=83.11  E-value=23  Score=28.72  Aligned_cols=113  Identities=11%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEe------CCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHH
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAG------TYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLI   71 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~g------v~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i   71 (198)
                      .|.++..++.+.+.+...+.+.+.      ..+.+       .+...+.++.|+++|++.+.+.+..+...+  ...+.+
T Consensus        42 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~  121 (279)
T cd00019          42 LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRV  121 (279)
T ss_pred             CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH
Confidence            366777777777766512233222      22222       234467778889999998877665443211  012455


Q ss_pred             HHHHHHHHcc---CCCCEEEEeCCCCc-ccccCHHHHHHHHc----CCCEEEEeeC
Q psy9711          72 YEHFISVADN---SPIPVIIYNNTFVT-NIDISVDTLVKLAH----HENIRGVKDT  119 (198)
Q Consensus        72 ~~y~~~i~~~---~~~pi~lYn~P~~t-g~~l~~~~l~~L~~----~p~i~giK~s  119 (198)
                      .+-++.+++.   .++.+.+=|.+... ...-+++.+.++.+    .|++--+=|.
T Consensus       122 ~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD~  177 (279)
T cd00019         122 IEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCIDT  177 (279)
T ss_pred             HHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence            6777777764   47888888876542 12346677777773    4676555554

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT

Probab=83.10  E-value=21  Score=29.09  Aligned_cols=72  Identities=14%  Similarity=0.110  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCC--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYC--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      =..++++-+-+++   +..++...+.  .+.++..+..+.+.+.++|++++.+..       .+.+.+.++.+ + .++|
T Consensus        13 f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~-------~~~~~~~l~~~-~-~~iP   83 (295)
T TIGR02955        13 YWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVS-------PEALNHDLAQL-T-KSIP   83 (295)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------hhhhhHHHHHH-h-cCCC
Confidence            3444555444444   6677665443  366777888888999999999987532       22223444444 3 3899


Q ss_pred             EEEEeC
Q psy9711          86 VIIYNN   91 (198)
Q Consensus        86 i~lYn~   91 (198)
                      +++++.
T Consensus        84 vV~~~~   89 (295)
T TIGR02955        84 VFALVN   89 (295)
T ss_pred             EEEEec
Confidence            998854

Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=83.09  E-value=17  Score=32.84  Aligned_cols=81  Identities=20%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCe-EEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKT-IIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~p-vi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ..|.+|-.+.+..+++.+   +.. |..|.   +..+.+..++.++.+.++|+|.+.+.-- ....  +|.++.++++.+
T Consensus       201 ~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DT-vG~~--tP~~v~~lV~~l  277 (503)
T PLN03228        201 KKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADT-VGIN--MPHEFGELVTYV  277 (503)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecC-CCCC--CHHHHHHHHHHH
Confidence            356667666666666666   443 55555   3344677899999999999998766543 3333  399999999999


Q ss_pred             HccC----CCCEEEE
Q psy9711          79 ADNS----PIPVIIY   89 (198)
Q Consensus        79 ~~~~----~~pi~lY   89 (198)
                      .+..    ++||-++
T Consensus       278 ~~~~~~~~~i~I~~H  292 (503)
T PLN03228        278 KANTPGIDDIVFSVH  292 (503)
T ss_pred             HHHhccccCceeEec
Confidence            8776    3666655

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=83.06  E-value=8.8  Score=32.88  Aligned_cols=69  Identities=10%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ++++.+.+. ++|+=.||.+.|+                 +.++++++.+++.|.+-+.++-    +.| +....++-|+
T Consensus       121 ~vv~~ak~~-~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~----KsS-~v~~~i~ayr  194 (360)
T PRK00366        121 EVVEAAKDY-GIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISV----KAS-DVQDLIAAYR  194 (360)
T ss_pred             HHHHHHHHC-CCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE----EcC-CHHHHHHHHH
Confidence            344444443 8999999987774                 4457888999999999998873    333 4778899999


Q ss_pred             HHHccCCCCEEE
Q psy9711          77 SVADNSPIPVII   88 (198)
Q Consensus        77 ~i~~~~~~pi~l   88 (198)
                      .+++.++-|+=+
T Consensus       195 lla~~~dyPLHl  206 (360)
T PRK00366        195 LLAKRCDYPLHL  206 (360)
T ss_pred             HHHhcCCCCcee
Confidence            999998766544

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=82.99  E-value=3.7  Score=33.41  Aligned_cols=62  Identities=26%  Similarity=0.299  Sum_probs=46.8

Q ss_pred             CCeEEEeCCCCc--------HHHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          24 KKTIIAGTYCES--------TRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~--------~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      +++||+-+--.|        ..+..++++.+++.||+++.+.. |.|+..+  .    ++.+.+.+.+++||+--|+
T Consensus        40 ~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs--~----~~l~~v~~~v~~PvL~KDF  110 (247)
T PRK13957         40 SFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAISVLTDQSYFGGS--L----EDLKSVSSELKIPVLRKDF  110 (247)
T ss_pred             CCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCC--H----HHHHHHHHhcCCCEEeccc
Confidence            578888663322        13678999999999999999885 7788776  4    5667777778899987665

>PRK08185 hypothetical protein; Provisional

Probab=82.94  E-value=26  Score=29.14  Aligned_cols=97  Identities=10%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ++++.+.+. +-. +......+.+.+....+.|++.+...++-..|...+..  ..++..+.+.+++.+++||.++-.-.
T Consensus         3 ~~L~~A~~~-~ya-V~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~~~~~~~~~a~~~~vPV~lHLDHg   78 (283)
T PRK08185          3 ELLKVAKEH-QFA-VGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDNFFAYVRERAKRSPVPFVIHLDHG   78 (283)
T ss_pred             HHHHHHHHc-Cce-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            444444433 222 23445567888899999999999999999988776654  45599999999999999999987643


Q ss_pred             CcccccCHHHHHHHHcCC-CEEEEeeC
Q psy9711          94 VTNIDISVDTLVKLAHHE-NIRGVKDT  119 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~p-~i~giK~s  119 (198)
                           -+.+.+.+..+.. +-+.+=.|
T Consensus        79 -----~~~e~i~~ai~~Gf~SVM~D~S  100 (283)
T PRK08185         79 -----ATIEDVMRAIRCGFTSVMIDGS  100 (283)
T ss_pred             -----CCHHHHHHHHHcCCCEEEEeCC
Confidence                 2577787777643 56777777

>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=82.88  E-value=16  Score=29.59  Aligned_cols=72  Identities=7%  Similarity=0.027  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhc---CCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          13 LKIISTLRQET---KKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .++++.+.+++   +.-++ .+.+..+.+...+..+.+...++|++++.+ .-      .+...+.++.+. ..++|+++
T Consensus        15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~-~~------~~~~~~~i~~~~-~~~iPvV~   86 (294)
T cd06316          15 NAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP-VD------PVSTAAAYKKVA-EAGIKLVF   86 (294)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC-CC------chhhhHHHHHHH-HcCCcEEE
Confidence            34555554444   66655 455666777778888888888999998863 21      222234455544 46899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        87 ~~~~   90 (294)
T cd06316          87 MDNV   90 (294)
T ss_pred             ecCC
Confidence            9874

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=82.84  E-value=14  Score=29.10  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      ..+++.+.+++   +..++...+..+.+...+..+.+.+.++|++++.+..   .+  ..   +.++.+ ...++|++++
T Consensus        15 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~---~~--~~---~~~~~~-~~~~ipvV~~   85 (268)
T cd06289          15 AELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAA---GT--SP---DLLKRL-AESGIPVVLV   85 (268)
T ss_pred             HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCC---Cc--cH---HHHHHH-HhcCCCEEEE
Confidence            33444444444   6677776666677878888888989999999998652   11  11   234443 3468999999


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      |.+
T Consensus        86 ~~~   88 (268)
T cd06289          86 ARE   88 (268)
T ss_pred             ecc
Confidence            864

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR01178 ade adenine deaminase

Probab=82.82  E-value=7  Score=35.61  Aligned_cols=76  Identities=8%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC--------CCcccccCHHHHHHHHcCCC
Q psy9711          41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT--------FVTNIDISVDTLVKLAHHEN  112 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P--------~~tg~~l~~~~l~~L~~~p~  112 (198)
                      +.++.+...|...++.. |.-... .+..+-++++.+.++.+++-+. +-.|        ..+|..+..+.+.++.+.|+
T Consensus        68 ~~~~~al~~GvTtvv~~-P~~~~~-v~g~~~~~~~~~~a~~~~~d~~-~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~  144 (552)
T TIGR01178        68 EFAKLVLPHGVTTVVSD-PHEIAN-VNGEDGINFMLNNAKKTPLNFY-FMLPSCVPALQFETSGAVLTAEDIDELMELDE  144 (552)
T ss_pred             HHHHHHHCCCEEEEEcC-CCCCCC-CCCHHHHHHHHHHhhcCCcEEE-EECCCCCCCCcccCCCCccCHHHHHHHHcCCC
Confidence            45677788899887775 443322 1244555666666666666643 3334        23456778999999998899


Q ss_pred             EEEEeeC
Q psy9711         113 IRGVKDT  119 (198)
Q Consensus       113 i~giK~s  119 (198)
                      |+|+|+-
T Consensus       145 V~glke~  151 (552)
T TIGR01178       145 VLGLAEV  151 (552)
T ss_pred             ccEEEEE
Confidence            9999987

The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.

>PRK06801 hypothetical protein; Provisional

Probab=82.81  E-value=12  Score=31.24  Aligned_cols=73  Identities=11%  Similarity=0.056  Sum_probs=0.0

Q ss_pred             HHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          16 ISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        16 ~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      ++.+++.+  +---+......+.+.+....+.|++.++..++-..|...+.. +.+.+..+.+.+++.+++||.++
T Consensus         6 ~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~a~~~~vpV~lH   80 (286)
T PRK06801          6 LANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYI-SLESLVEAVKFEAARHDIPVVLN   80 (286)
T ss_pred             HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcC-CHHHHHHHHHHHHHHCCCCEEEE

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=82.78  E-value=24  Score=28.62  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..=..++++.+.+++   +..++......+.++..+..+.+.+.++|++++.+..       .+......+.+ ...++
T Consensus        37 ~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~-------~~~~~~~l~~~-~~~~i  108 (295)
T PRK10653         37 NNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD-------SDAVGNAVKMA-NQANI  108 (295)
T ss_pred             CChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHH-HHCCC
Confidence            3333455665555555   7777666555567777888888888899999886432       22222333333 34689


Q ss_pred             CEEEEeCC
Q psy9711          85 PVIIYNNT   92 (198)
Q Consensus        85 pi~lYn~P   92 (198)
                      |++++|.+
T Consensus       109 pvV~~~~~  116 (295)
T PRK10653        109 PVITLDRG  116 (295)
T ss_pred             CEEEEccC
Confidence            99999864

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=82.74  E-value=7.3  Score=32.69  Aligned_cols=90  Identities=11%  Similarity=0.063  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH-ccCCCCEEEEeC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA-DNSPIPVIIYNN   91 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~-~~~~~pi~lYn~   91 (198)
                      ..++..+++..++|||+.=|=.+-++    ++.+..+|||+|++...+....   +...-+.|++.. +...-..++.+.
T Consensus       150 ~~ll~~v~~~~~iPviaaGGI~~~~~----~~~al~~GA~gV~iGt~f~~t~---Es~~~~~~k~~l~~~~~~dt~~t~~  222 (307)
T TIGR03151       150 MALVPQVVDAVSIPVIAAGGIADGRG----MAAAFALGAEAVQMGTRFLCAK---ECNVHPNYKEKVLKAKDRDTVVTGA  222 (307)
T ss_pred             HHHHHHHHHHhCCCEEEECCCCCHHH----HHHHHHcCCCEeecchHHhccc---ccCCCHHHHHHHHhCCCCCEEEEec
Confidence            45666666665899887433333333    3444457999999999876543   334556666644 555567777775


Q ss_pred             C-CCcccccCHHHHHHHHc
Q psy9711          92 T-FVTNIDISVDTLVKLAH  109 (198)
Q Consensus        92 P-~~tg~~l~~~~l~~L~~  109 (198)
                      + .+.+..+..+...++.+
T Consensus       223 ~~G~~~R~l~n~~~~~~~~  241 (307)
T TIGR03151       223 STGHPVRVLKNKLTRKYQE  241 (307)
T ss_pred             CCCCceeeecCHHHHHHHh
Confidence            4 24455778888877764

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=82.68  E-value=18  Score=28.71  Aligned_cols=73  Identities=11%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          12 KLKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        12 r~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ..++++.+.+.+    +.-++......+.++..+..+.+...++|++++.++..       +...+..+.+ .+.++|++
T Consensus        14 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-------~~~~~~~~~~-~~~~ipvV   85 (270)
T cd06308          14 RAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA-------APLTPVVEEA-YRAGIPVI   85 (270)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch-------hhchHHHHHH-HHCCCCEE
Confidence            344444444443    45666655555677778888888888999999876431       1111233343 34689999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      ++|.+
T Consensus        86 ~~~~~   90 (270)
T cd06308          86 LLDRK   90 (270)
T ss_pred             EeCCC
Confidence            99863

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional

Probab=82.61  E-value=14  Score=28.33  Aligned_cols=50  Identities=2%  Similarity=-0.087  Sum_probs=26.6

Q ss_pred             eCCCCcHHHHHHHHHHHH-hcCCCEEEEcCCC---CcCCCCCHHHHHHHHHHHHcc
Q psy9711          30 GTYCESTRATIDLTQKAA-KAGANAALILCPY---YFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        30 gv~~~~~~~~i~~a~~a~-~~Gad~v~~~~P~---y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      |+++.++.+..++..... ....|.|+++-=.   ....  +.+++.+-++.+.+.
T Consensus        50 Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~--~~~~~~~~l~~li~~  103 (191)
T PRK10528         50 SISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGF--PPQQTEQTLRQIIQD  103 (191)
T ss_pred             CcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCC--CHHHHHHHHHHHHHH
Confidence            677777776666555433 3356666665211   1112  256666666666543

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=82.56  E-value=18  Score=28.69  Aligned_cols=75  Identities=9%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..++...+..+.+...+..+...+.++|++++.+....... ..+   .+++.+ ...++|+++
T Consensus        14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~-~~~---~~~~~~-~~~~ipvV~   88 (273)
T cd01541          14 FPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN-PNI---DLYLKL-EKLGIPYVF   88 (273)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc-ccH---HHHHHH-HHCCCCEEE
Confidence            445555555555   677777766677777888888899999999999764322111 011   344554 456899999


Q ss_pred             EeC
Q psy9711          89 YNN   91 (198)
Q Consensus        89 Yn~   91 (198)
                      .|.
T Consensus        89 ~~~   91 (273)
T cd01541          89 INA   91 (273)
T ss_pred             Eec
Confidence            985

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=82.50  E-value=33  Score=30.05  Aligned_cols=124  Identities=14%  Similarity=0.180  Sum_probs=72.9

Q ss_pred             EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHH
Q psy9711          27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV  105 (198)
Q Consensus        27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~  105 (198)
                      +.+|++-....++.+.++.+.++|+|.+.+-.-.   ..  .+.+.+..+.|-+.. +++++.=|.       .+.+...
T Consensus       142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~---g~--~~~~~~~v~~ik~~~p~~~vi~g~V-------~T~e~a~  209 (404)
T PRK06843        142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH---GH--STRIIELVKKIKTKYPNLDLIAGNI-------VTKEAAL  209 (404)
T ss_pred             eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCC---CC--ChhHHHHHHHHHhhCCCCcEEEEec-------CCHHHHH
Confidence            3344433334678999999999999999864332   22  455677777777766 588888664       4677777


Q ss_pred             HHHcC--CCE-EEE--------e--eC-CHHHHHHH---HhhcCCCCeEEE-ec---ChhhHHHHhhcCCCeEEeccc
Q psy9711         106 KLAHH--ENI-RGV--------K--DT-DNIKLANM---ANQTKDLNFSVF-AG---SAGYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       106 ~L~~~--p~i-~gi--------K--~s-d~~~~~~~---~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~~~  162 (198)
                      ++.+.  .-| +|+        +  .. ...++..+   .+.....++.|+ .|   ....+..++.+|+++++.|..
T Consensus       210 ~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~  287 (404)
T PRK06843        210 DLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL  287 (404)
T ss_pred             HHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence            77753  222 232        1  11 11222211   110111234444 34   234678899999999987765

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=82.48  E-value=27  Score=29.04  Aligned_cols=93  Identities=15%  Similarity=0.123  Sum_probs=63.1

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE--
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKA----GANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII--   88 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l--   88 (198)
                      ..-+|+| ++-.|-+.+++.|+..++.    |+..+.=        ..|+-+..- .-++=+++.+++.+.+++||+-  
T Consensus        16 ~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~-G~eeGL~iL~~vk~~~glpvvTeV   94 (290)
T PLN03033         16 PFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGP-GMAEGLKILEKVKVAYDLPIVTDV   94 (290)
T ss_pred             CeEEEecCChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCceEEee
Confidence            3457777 5667778888888888885    8765543        235544322 2478889999999999999973  


Q ss_pred             ---------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 ---------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 ---------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                     ..+|.+.-.  ..+++..+++....|-+|-.
T Consensus        95 ~~~~q~~~vae~~DilQIgAr~~r--qtdLL~a~~~tgkpV~lKkG  138 (290)
T PLN03033         95 HESSQCEAVGKVADIIQIPAFLCR--QTDLLVAAAKTGKIINIKKG  138 (290)
T ss_pred             CCHHHHHHHHhhCcEEeeCcHHHH--HHHHHHHHHccCCeEEeCCC
Confidence                           234544322  24566667777778888877

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=82.45  E-value=19  Score=28.33  Aligned_cols=74  Identities=12%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..-..++++.+.+++   +..+++..+..+.+...+..+...+.++|++++.++.   .   .+.+...   + +..++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---~---~~~~~~~---l-~~~~i   79 (268)
T cd06298          10 TNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK---I---SEEHREE---F-KRSPT   79 (268)
T ss_pred             cchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC---C---cHHHHHH---H-hcCCC
Confidence            3344455555555554   5566555556667777777777778899999997532   1   2333333   3 34589


Q ss_pred             CEEEEeC
Q psy9711          85 PVIIYNN   91 (198)
Q Consensus        85 pi~lYn~   91 (198)
                      |++++|.
T Consensus        80 pvV~~~~   86 (268)
T cd06298          80 PVVLAGS   86 (268)
T ss_pred             CEEEEcc
Confidence            9999986

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=82.32  E-value=25  Score=28.45  Aligned_cols=144  Identities=10%  Similarity=-0.086  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH-HHHccCCCC----E
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI-SVADNSPIP----V   86 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~-~i~~~~~~p----i   86 (198)
                      ..++++.+.+.+.+|+.+|-|-.|.+++    +.+-+.|++.+++..-.+..|. --+++.++|. .+.-+.+.-    .
T Consensus        62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~----~~~l~~Ga~~vvigT~a~~~p~-~~~~~~~~~g~~ivvslD~k~~g~~  136 (243)
T TIGR01919        62 NEMMLEEVVKLLVVVEELSGGRRDDSSL----RAALTGGRARVNGGTAALENPW-WAAAVIRYGGDIVAVGLDVLEDGEW  136 (243)
T ss_pred             hHHHHHHHHHHCCCCEEEcCCCCCHHHH----HHHHHcCCCEEEECchhhCCHH-HHHHHHHHccccEEEEEEEecCCce
Confidence            3457777777668899998887666554    4444579999998776554332 1223333331 122122211    0


Q ss_pred             EEEeCCCCcccccCHH-HHHHHHcC--CCE-------EEEeeC-CHHHHHHHHhhcCCCCeEEEecC-hh--hHHHH--h
Q psy9711          87 IIYNNTFVTNIDISVD-TLVKLAHH--ENI-------RGVKDT-DNIKLANMANQTKDLNFSVFAGS-AG--YLLSG--L  150 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~-~l~~L~~~--p~i-------~giK~s-d~~~~~~~~~~~~~~~~~v~~G~-d~--~~~~~--l  150 (198)
                      ...-..++.-..+++. .+.++.+.  ..|       .|.... |...+.++.. ..+-++ +.+|- .+  .+...  +
T Consensus       137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~-~~~~pv-iasGGv~s~eDl~~l~~l  214 (243)
T TIGR01919       137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAA-RTDAIV-AASGGSSLLDDLRAIKYL  214 (243)
T ss_pred             EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHh-hCCCCE-EEECCcCCHHHHHHHHhh
Confidence            0111111222344554 44455443  233       344444 7777776653 322233 33332 22  22221  2


Q ss_pred             -hcCCCeEEeccc
Q psy9711         151 -LVGCAGGINALS  162 (198)
Q Consensus       151 -~~G~~G~is~~~  162 (198)
                       ..|.+|++.|.+
T Consensus       215 ~~~Gv~gvivg~A  227 (243)
T TIGR01919       215 DEGGVSVAIGGKL  227 (243)
T ss_pred             ccCCeeEEEEhHH
Confidence             459999998876

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=82.28  E-value=7.4  Score=32.20  Aligned_cols=47  Identities=13%  Similarity=-0.086  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      .+...+++++..+.|++++++..-.-..+.+|.+|-.+..+.+.+.+
T Consensus        20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~   66 (289)
T cd00951          20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEET   66 (289)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence            34444444444445555544443221111122444444444444443

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=82.25  E-value=12  Score=31.76  Aligned_cols=70  Identities=13%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711          13 LKIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +++++.+.+. ++|+=.||.+-|+                 +.++++++.+++.|.+-+.++-    +.| +....++-|
T Consensus       111 ~~vv~~ak~~-~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~----KsS-dv~~~i~ay  184 (346)
T TIGR00612       111 RDVVEKARDH-GKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSM----KAS-DVAETVAAY  184 (346)
T ss_pred             HHHHHHHHHC-CCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE----EcC-CHHHHHHHH
Confidence            3455555444 8999999987764                 4567888999999999888863    333 477788899


Q ss_pred             HHHHccCCCCEEE
Q psy9711          76 ISVADNSPIPVII   88 (198)
Q Consensus        76 ~~i~~~~~~pi~l   88 (198)
                      +.+++.++-|+=+
T Consensus       185 r~la~~~dyPLHl  197 (346)
T TIGR00612       185 RLLAERSDYPLHL  197 (346)
T ss_pred             HHHHhhCCCCcee
Confidence            9999988866543

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=82.07  E-value=12  Score=32.42  Aligned_cols=37  Identities=14%  Similarity=0.210  Sum_probs=25.9

Q ss_pred             HHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711          16 ISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        16 ~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      ++.+++..++||++ ||      .+.+-++.+.++|+|++.+..
T Consensus       237 i~~lr~~~~~pvivKgV------~s~~dA~~a~~~Gvd~I~Vs~  274 (381)
T PRK11197        237 LEWIRDFWDGPMVIKGI------LDPEDARDAVRFGADGIVVSN  274 (381)
T ss_pred             HHHHHHhCCCCEEEEec------CCHHHHHHHHhCCCCEEEECC
Confidence            44444445889877 67      234556778889999999875

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=82.04  E-value=10  Score=31.57  Aligned_cols=91  Identities=8%  Similarity=0.084  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      +++++.+.+. +-.| ......+.+.+....+.|++.+...++-..|.-.+.. ..+.+..+.+.+++.+++||.++-.-
T Consensus         7 k~il~~A~~~-~yaV-~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-g~~~~~~~~~~~A~~~~VPV~lHLDH   83 (284)
T PRK09195          7 KQMLNNAQRG-GYAV-PAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYA-GTEYLLAIVSAAAKQYHHPLALHLDH   83 (284)
T ss_pred             HHHHHHHHHc-CceE-EEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            3455555444 3333 4455567888888899999999999998888755443 36789999999999999999999764


Q ss_pred             CCcccccCHHHHHHHHcCC
Q psy9711          93 FVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~~p  111 (198)
                      ..     +.+.+.+-.+..
T Consensus        84 g~-----~~e~i~~Ai~~G   97 (284)
T PRK09195         84 HE-----KFDDIAQKVRSG   97 (284)
T ss_pred             CC-----CHHHHHHHHHcC
Confidence            32     456676666543

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=81.82  E-value=6.3  Score=31.72  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIR  114 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~  114 (198)
                      .+..++++.+++.|++.+++..-.-......+  =.+.++++.+.+++|++.      +|---+++.+.++.+.  .++.
T Consensus       146 ~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~~ipvia------sGGi~s~~D~~~l~~~~~~Gvd  217 (241)
T PRK14024        146 GDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--NLELLREVCARTDAPVVA------SGGVSSLDDLRALAELVPLGVE  217 (241)
T ss_pred             ccHHHHHHHHHhcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHhhhccCCcc
Confidence            44566666667777776666643211100001  134556666666677665      3444566666666532  3455


Q ss_pred             EEee
Q psy9711         115 GVKD  118 (198)
Q Consensus       115 giK~  118 (198)
                      |+=-
T Consensus       218 gV~i  221 (241)
T PRK14024        218 GAIV  221 (241)
T ss_pred             EEEE
Confidence            5433

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=81.77  E-value=27  Score=28.48  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=73.1

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV   94 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~   94 (198)
                      .++.+.+.+++||+.-=.-.+.    .++..|...|||+++++....   +  ++++.++++ .+...++-.++--.   
T Consensus        93 ~l~~v~~~v~~PvL~KDFIid~----~QI~ea~~~GADavLLI~~~L---~--~~~l~~l~~-~a~~lGle~LVEVh---  159 (247)
T PRK13957         93 DLKSVSSELKIPVLRKDFILDE----IQIREARAFGASAILLIVRIL---T--PSQIKSFLK-HASSLGMDVLVEVH---  159 (247)
T ss_pred             HHHHHHHhcCCCEEeccccCCH----HHHHHHHHcCCCEEEeEHhhC---C--HHHHHHHHH-HHHHcCCceEEEEC---
Confidence            3444444447888773221111    344555669999999986653   2  666666554 45667877665321   


Q ss_pred             cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEeccc
Q psy9711          95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALS  162 (198)
Q Consensus        95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~  162 (198)
                           +.+.+.+-.+ -+.++||=.-       |+....++.. ..+++..+.  +|..+  .+.. +..+++|+.-|.+
T Consensus       160 -----~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~-~ip~~~~~IsESGI~t~~d~~~-l~~~~davLvG~~  232 (247)
T PRK13957        160 -----TEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAA-FLPPNIVKVGESGIESRSDLDK-FRKLVDAALIGTY  232 (247)
T ss_pred             -----CHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHh-hCCCCcEEEEcCCCCCHHHHHH-HHHhCCEEEECHH
Confidence                 2344554444 5789998765       5666666663 344454433  34332  2222 2334899988876

>PLN02826 dihydroorotate dehydrogenase

Probab=81.77  E-value=36  Score=29.90  Aligned_cols=137  Identities=7%  Similarity=-0.023  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHh--------c-CCeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQE--------T-KKTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         8 t~~Er~~l~~~~~~~--------~-~~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ..+.-.++++.+.+.        . ++||++=++..-+ ++..+.++.+.+.|+|++.+..-....+.    ++..    
T Consensus       237 ~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~----dl~~----  308 (409)
T PLN02826        237 GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPD----SVLG----  308 (409)
T ss_pred             ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCcc----chhc----
Confidence            345556677766543        2 6899997765444 47888889999999999999977654432    1110    


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcC
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVG  153 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G  153 (198)
                            .+. -...-+.+|..+-+-.+.                 .+.++. +..++++.|+  .|-.  ......+.+|
T Consensus       309 ------~~~-~~~~GGlSG~pl~~~sl~-----------------~v~~l~-~~~~~~ipIIgvGGI~sg~Da~e~i~AG  363 (409)
T PLN02826        309 ------HPH-ADEAGGLSGKPLFDLSTE-----------------VLREMY-RLTRGKIPLVGCGGVSSGEDAYKKIRAG  363 (409)
T ss_pred             ------ccc-cccCCCcCCccccHHHHH-----------------HHHHHH-HHhCCCCcEEEECCCCCHHHHHHHHHhC
Confidence                  110 001112344443332222                 122222 1222334443  2332  2456778889


Q ss_pred             CCeEEecccccc--hHHHHHHHHHHH
Q psy9711         154 CAGGINALSAVL--GGPICELYDLAK  177 (198)
Q Consensus       154 ~~G~is~~~n~~--P~~~~~l~~~~~  177 (198)
                      ++.+..+++.++  |.++.++.+.+.
T Consensus       364 As~VQv~Ta~~~~Gp~~i~~I~~eL~  389 (409)
T PLN02826        364 ASLVQLYTAFAYEGPALIPRIKAELA  389 (409)
T ss_pred             CCeeeecHHHHhcCHHHHHHHHHHHH
Confidence            998887877665  777766666553

>COG1609 PurR Transcriptional regulators [Transcription]

Probab=81.71  E-value=18  Score=30.50  Aligned_cols=72  Identities=10%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .-..++++-+-+++   +.-++++.+..+.++-.+..+...+.++||+++.+   ...   .+...++    ....++|+
T Consensus        71 ~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~---~~~---~~~~~~~----l~~~~~P~  140 (333)
T COG1609          71 PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG---ERP---NDSLLEL----LAAAGIPV  140 (333)
T ss_pred             chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec---CCC---CHHHHHH----HHhcCCCE
Confidence            34455555555555   88888888888888888888999999999999997   122   3323332    23348999


Q ss_pred             EEEeC
Q psy9711          87 IIYNN   91 (198)
Q Consensus        87 ~lYn~   91 (198)
                      ++.+.
T Consensus       141 V~i~~  145 (333)
T COG1609         141 VVIDR  145 (333)
T ss_pred             EEEeC
Confidence            99986

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=81.68  E-value=29  Score=28.80  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=60.6

Q ss_pred             eEEEe-CCCCcHHHHHHHHHHHH----hcCCCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE----
Q psy9711          26 TIIAG-TYCESTRATIDLTQKAA----KAGANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII----   88 (198)
Q Consensus        26 pvi~g-v~~~~~~~~i~~a~~a~----~~Gad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l----   88 (198)
                      -+|+| ++-.|-+.+++.++..+    ++|+..+.=        ..|+.|..- .-++-+++++++.+.+++||+-    
T Consensus        18 ~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~-G~eeGL~iL~~vk~~~GlpvvTeV~~   96 (281)
T PRK12457         18 VLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGV-GLDEGLRIFEEVKARFGVPVITDVHE   96 (281)
T ss_pred             EEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCceEEEeCC
Confidence            46666 46667777788888755    689877554        245544432 2478899999999999999973    


Q ss_pred             -------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 -------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 -------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                   -.+|.+.-.  ..+++..+++....|-+|-.
T Consensus        97 ~~~~~~~ae~vDilQIgAr~~r--ntdLL~a~~~t~kpV~lKrG  138 (281)
T PRK12457         97 VEQAAPVAEVADVLQVPAFLAR--QTDLVVAIAKTGKPVNIKKP  138 (281)
T ss_pred             HHHHHHHhhhCeEEeeCchhhc--hHHHHHHHhccCCeEEecCC
Confidence                         234554222  24666666666677777765

>KOG0633|consensus

Probab=81.65  E-value=16  Score=30.26  Aligned_cols=141  Identities=21%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             eEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCC----CCHHHHHH---------HHHHHHcc----CCCCEE
Q psy9711          26 TIIAGTYCESTRATIDLTQKA-AKAGANAALILCPYYFQKK----MTEDLIYE---------HFISVADN----SPIPVI   87 (198)
Q Consensus        26 pvi~gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~----~~~~~i~~---------y~~~i~~~----~~~pi~   87 (198)
                      -+.+|||+   +|.|+.+-++ -.-|=+-++..||.|.-.+    ..+.++++         -..+|++-    +.+.++
T Consensus        88 nic~GvGs---DE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~  164 (375)
T KOG0633|consen   88 NICVGVGS---DELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCI  164 (375)
T ss_pred             ceEEecCc---HHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEE
Confidence            36778886   5666665544 4668899999999985432    11211111         12333332    345566


Q ss_pred             EEeCCCC-cccccCHHHHHHHHcCC--CEEEEeeC--CHHH---HHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEEe
Q psy9711          88 IYNNTFV-TNIDISVDTLVKLAHHE--NIRGVKDT--DNIK---LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGIN  159 (198)
Q Consensus        88 lYn~P~~-tg~~l~~~~l~~L~~~p--~i~giK~s--d~~~---~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~is  159 (198)
                      +-..|.. ||..+..+.+.++.++|  .+|-+-+.  |+..   -..+..  ..+++.++.-.      +-..|-.|.=-
T Consensus       165 F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~--kYpNLivlqTl------SKsfGLAGiRv  236 (375)
T KOG0633|consen  165 FLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVK--KYPNLIVLQTL------SKSFGLAGIRV  236 (375)
T ss_pred             EEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhH--hCCceeehhhh------hhhcCcceeEe
Confidence            6666665 78899999999999998  45555555  5432   123332  35676655321      23456666655


Q ss_pred             cccccchHHHHHHHHHHHc
Q psy9711         160 ALSAVLGGPICELYDLAKA  178 (198)
Q Consensus       160 ~~~n~~P~~~~~l~~~~~~  178 (198)
                      |. +.+|..+.++..++++
T Consensus       237 G~-~~~~~~ia~iln~~Ka  254 (375)
T KOG0633|consen  237 GY-GAFPLSIAEILNRAKA  254 (375)
T ss_pred             ec-ccccHHHHHHHHhccC
Confidence            54 3566666666665554

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=81.62  E-value=8  Score=32.09  Aligned_cols=56  Identities=11%  Similarity=-0.104  Sum_probs=30.5

Q ss_pred             CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711          33 CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII   88 (198)
Q Consensus        33 ~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l   88 (198)
                      .-+.+...+++++..+.|+|++++..-.-.-+++|.+|-.+..+.+.+.+  ++||+.
T Consensus        22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~   79 (296)
T TIGR03249        22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYT   79 (296)
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence            34455556666666666666666653332222233666666666665554  256554

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=81.58  E-value=19  Score=29.78  Aligned_cols=16  Identities=6%  Similarity=-0.124  Sum_probs=7.8

Q ss_pred             cccccchHHHHHHHHH
Q psy9711         160 ALSAVLGGPICELYDL  175 (198)
Q Consensus       160 ~~~n~~P~~~~~l~~~  175 (198)
                      +.+|..-+.++.+++.
T Consensus       242 ~aGN~~tE~lv~~l~~  257 (279)
T cd07947         242 RTGNCPLEAMVIEYAQ  257 (279)
T ss_pred             cccchhHHHHHHHHHH
Confidence            3445555555544443

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=81.57  E-value=35  Score=29.67  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=23.7

Q ss_pred             CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711          24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      +.|.+.+..- .+-+.+.++.++|+++|+.++++.
T Consensus       121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlT  155 (381)
T PRK11197        121 KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFT  155 (381)
T ss_pred             CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            3345555421 234566788999999999999995

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=81.49  E-value=15  Score=31.57  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-C---C-----------CHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-K---M-----------TEDL   70 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~---~-----------~~~~   70 (198)
                      -+|.++.+++++.+.+. +-.| ......+.+.+....+.|++.....++-..|.-.+. .   .           ....
T Consensus         9 ~~~~~~~~~lL~~A~~~-~yAV-gAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~   86 (357)
T TIGR01520         9 VITGDDVHKLFQYAKEN-NFAI-PAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIA   86 (357)
T ss_pred             ccCHHHHHHHHHHHHHC-CceE-EEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHH
Confidence            46889999999988776 3333 334555788888899999999999999888753221 0   0           0123


Q ss_pred             HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          71 IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        71 i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      +..+.+.+++.+++||.++-.-   |.++..+.+.+..+.
T Consensus        87 ~~~~v~~~Ae~a~VPValHLDH---g~~~~~~~i~~ai~a  123 (357)
T TIGR01520        87 GAHHVHSIAEHYGVPVVLHTDH---CAKKLLPWVDGLLEA  123 (357)
T ss_pred             HHHHHHHHHHHCCCCEEEECCC---CCCcchHHHHHHHHh
Confidence            8889999999999999999753   344443556666543

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase

Probab=81.48  E-value=30  Score=28.89  Aligned_cols=106  Identities=9%  Similarity=0.065  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHh-cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAK-AGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~-~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++-.+.++.+++..  ++.+.+=. ++-+.+++++.++..++ .|.+-..+--|.   +.  .    +-++.+.++++
T Consensus       136 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~---~~--~----~~~~~l~~~~~  206 (307)
T TIGR01927       136 ELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPL---PD--A----DEMSAFSEATG  206 (307)
T ss_pred             ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEeCCC---CC--H----HHHHHHHHhCC
Confidence            3445566777777766  57777755 45678888888888875 444545566665   22  2    56777888888


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      +||.+=..      ..+...+.++.+.  ..++-+|-+   .+....++.
T Consensus       207 ~Pia~dEs------~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~  250 (307)
T TIGR01927       207 TAIALDES------LWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLA  250 (307)
T ss_pred             CCEEeCCC------cCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHH
Confidence            99877442      2456777787743  578888888   455554444

This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=81.47  E-value=12  Score=29.56  Aligned_cols=48  Identities=13%  Similarity=0.191  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK   64 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~   64 (198)
                      .++++.+.+..++||+++-|=.+.+++.+..    +.|+|+|++........
T Consensus       145 ~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l----~~GadgV~vgS~l~~~~  192 (236)
T cd04730         145 FALVPEVRDAVDIPVIAAGGIADGRGIAAAL----ALGADGVQMGTRFLATE  192 (236)
T ss_pred             HHHHHHHHHHhCCCEEEECCCCCHHHHHHHH----HcCCcEEEEchhhhcCc
Confidence            4556666554488998855533333333323    47999999998887654

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=81.40  E-value=26  Score=28.14  Aligned_cols=116  Identities=15%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEe
Q psy9711          38 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK  117 (198)
Q Consensus        38 ~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK  117 (198)
                      ...+.++..+++|+.+-+.+.|.-      +-+.+.   .+.+.++.=+++=-+|+..|..+-++++.++.         
T Consensus        96 ~~~~~i~~Ik~~G~kaGlalnP~T------~~~~l~---~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~---------  157 (229)
T PRK09722         96 QAFRLIDEIRRAGMKVGLVLNPET------PVESIK---YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIA---------  157 (229)
T ss_pred             hHHHHHHHHHHcCCCEEEEeCCCC------CHHHHH---HHHHhcCEEEEEEEcCCCcchhccHHHHHHHH---------
Confidence            344555666777888777777751      222222   22334454444555688888888888888774         


Q ss_pred             eCCHHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhcCCCeEEecccccch--HHHHHHHHHHH
Q psy9711         118 DTDNIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLVGCAGGINALSAVLG--GPICELYDLAK  177 (198)
Q Consensus       118 ~sd~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~G~~G~is~~~n~~P--~~~~~l~~~~~  177 (198)
                           ++++++. ..+.++.+  =.|-. +.+.....+|++.+++|.+.+|-  +-..+.++.++
T Consensus       158 -----~lr~~~~-~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~  216 (229)
T PRK09722        158 -----ELKALRE-RNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT  216 (229)
T ss_pred             -----HHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence                 3344442 22334333  23333 35557778999999999764542  22445555554

>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]

Probab=81.31  E-value=21  Score=29.53  Aligned_cols=74  Identities=11%  Similarity=0.098  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhc---C--CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          12 KLKIISTLRQET---K--KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        12 r~~l~~~~~~~~---~--~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      +..+.+.+.+++   +  ..++..-+..+....+..++.+...|+|++++.|+-       ++.+..-.+... ..++||
T Consensus        48 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d-------~~~~~~~v~~a~-~aGIpV  119 (322)
T COG1879          48 FQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVD-------PDALTPAVKKAK-AAGIPV  119 (322)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCC-------hhhhHHHHHHHH-HCCCcE
Confidence            444555555555   3  234444455788889999999999999999998774       455555555554 358999


Q ss_pred             EEEeCCC
Q psy9711          87 IIYNNTF   93 (198)
Q Consensus        87 ~lYn~P~   93 (198)
                      +.+|.+.
T Consensus       120 v~~d~~~  126 (322)
T COG1879         120 VTVDSDI  126 (322)
T ss_pred             EEEecCC
Confidence            9999853

>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=81.31  E-value=19  Score=29.51  Aligned_cols=73  Identities=4%  Similarity=-0.032  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKA--GANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~--Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      +.++++.+.+++   +.-+++..+..+.+...+..+...+.  ++|++++.+.. .  .  .+   +..+.+ ...++|+
T Consensus        15 ~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~-~--~--~~---~~~~~~-~~~giPv   85 (305)
T cd06324          15 WNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEK-S--V--AP---ELLRLA-EGAGVKL   85 (305)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCc-c--c--hH---HHHHHH-HhCCCeE
Confidence            444555444444   66666655566777788888888898  99999996432 1  1  22   223333 3478999


Q ss_pred             EEEeCCC
Q psy9711          87 IIYNNTF   93 (198)
Q Consensus        87 ~lYn~P~   93 (198)
                      +++|.+.
T Consensus        86 V~~~~~~   92 (305)
T cd06324          86 FLVNSGL   92 (305)
T ss_pred             EEEecCC
Confidence            9999753

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=81.14  E-value=8.4  Score=32.14  Aligned_cols=47  Identities=15%  Similarity=-0.056  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      .+...+++++..+.|++++++..-.-..+++|.+|-.+..+.+.+.+
T Consensus        27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~   73 (303)
T PRK03620         27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETT   73 (303)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence            34444444444444455444432221111122444444444444433

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=81.13  E-value=35  Score=30.21  Aligned_cols=87  Identities=23%  Similarity=0.219  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHHccC
Q psy9711          12 KLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVADNS   82 (198)
Q Consensus        12 r~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~~~~   82 (198)
                      ..+.++.+.+.. ++||++|-.. +    .+.++++.++|||++-+. .|-....+       ..+-..+....+.++..
T Consensus       252 ~~~~i~~i~~~~~~~~vi~G~v~-t----~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~  326 (450)
T TIGR01302       252 VIDSIKEIKKTYPDLDIIAGNVA-T----AEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQS  326 (450)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCC-C----HHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhc
Confidence            345566666655 8999997654 2    345667778899999776 35432221       01444555566666667


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      ++||+-     -.|+.-+.+..+-|+
T Consensus       327 ~vpvia-----dGGi~~~~di~kAla  347 (450)
T TIGR01302       327 GIPVIA-----DGGIRYSGDIVKALA  347 (450)
T ss_pred             CCeEEE-----eCCCCCHHHHHHHHH
Confidence            888765     346666667667676

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=80.98  E-value=11  Score=30.95  Aligned_cols=78  Identities=19%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             HHHHHHHhcCCCEEEEcCCC------Cc-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH----HHHHc
Q psy9711          41 DLTQKAAKAGANAALILCPY------YF-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL----VKLAH  109 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~------y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~  109 (198)
                      -.|+.+.++|+|.+++....      |. ....|-++++.|-+.|.+.++-++++-|.|..+ +..+++.-    .||.+
T Consensus        27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~s-y~~s~e~av~nA~rl~k  105 (261)
T PF02548_consen   27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGS-YQASPEQAVRNAGRLMK  105 (261)
T ss_dssp             HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTS-STSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccc-ccCCHHHHHHHHHHHHH
Confidence            45778889999999998643      11 112469999999999999999999999999743 43566544    35556


Q ss_pred             CCCEEEEeeC
Q psy9711         110 HENIRGVKDT  119 (198)
Q Consensus       110 ~p~i~giK~s  119 (198)
                      .-+.-++|.+
T Consensus       106 e~GadaVKlE  115 (261)
T PF02548_consen  106 EAGADAVKLE  115 (261)
T ss_dssp             TTT-SEEEEE
T ss_pred             hcCCCEEEec
Confidence            6789999998

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=80.96  E-value=12  Score=31.16  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      +++++.+.+. +- -+......+.+.+....+.|++.++..++-..|.-.+.. ..+.+..+.+..++.+++||.++-.-
T Consensus         7 ~~~l~~A~~~-~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-g~~~~~~~~~~~a~~~~VPValHLDH   83 (284)
T PRK12737          7 KNMLKKAQAE-GY-AVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYA-GTDYIVAIAEVAARKYNIPLALHLDH   83 (284)
T ss_pred             HHHHHHHHHc-Cc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            3455554443 22 223445567888888999999999999988888765543 36778888999999999999998754


Q ss_pred             CCcccccCHHHHHHHHcC
Q psy9711          93 FVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~~  110 (198)
                      ..     +.+.+.+-.+.
T Consensus        84 ~~-----~~e~i~~ai~~   96 (284)
T PRK12737         84 HE-----DLDDIKKKVRA   96 (284)
T ss_pred             CC-----CHHHHHHHHHc
Confidence            32     34555555443

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=80.95  E-value=34  Score=29.12  Aligned_cols=140  Identities=15%  Similarity=0.128  Sum_probs=76.6

Q ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH----cC-CCEEE
Q psy9711          41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRG  115 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~-p~i~g  115 (198)
                      +..+.|.+.|+|.+-+...    .+ ..+.+.++.+ .+...++-+..+=.  .+ ...+++.+.+++    +. +..+.
T Consensus        92 ~dl~~a~~~gvd~iri~~~----~~-e~~~~~~~i~-~ak~~G~~v~~~l~--~a-~~~~~e~l~~~a~~~~~~Ga~~i~  162 (337)
T PRK08195         92 DDLKMAYDAGVRVVRVATH----CT-EADVSEQHIG-LARELGMDTVGFLM--MS-HMAPPEKLAEQAKLMESYGAQCVY  162 (337)
T ss_pred             HHHHHHHHcCCCEEEEEEe----cc-hHHHHHHHHH-HHHHCCCeEEEEEE--ec-cCCCHHHHHHHHHHHHhCCCCEEE
Confidence            4456777888888776532    22 1333444444 44445666555432  12 245777776655    33 68999


Q ss_pred             EeeC----CHHHHHHHHh---hcCCCCeEE-EecChh------hHHHHhhcCC---CeEEecc----cccchHHHHHHHH
Q psy9711         116 VKDT----DNIKLANMAN---QTKDLNFSV-FAGSAG------YLLSGLLVGC---AGGINAL----SAVLGGPICELYD  174 (198)
Q Consensus       116 iK~s----d~~~~~~~~~---~~~~~~~~v-~~G~d~------~~~~~l~~G~---~G~is~~----~n~~P~~~~~l~~  174 (198)
                      ++||    .+..+.++++   +..+++..+ |-+.+.      ..+.++..|+   ||.+.|+    +|..-|.++.+.+
T Consensus       163 i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~  242 (337)
T PRK08195        163 VVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLD  242 (337)
T ss_pred             eCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHH
Confidence            9999    5665554442   233344443 445543      2345677886   4444443    3666677776665


Q ss_pred             HH--HcC-CHHHHHHHHH
Q psy9711         175 LA--KAG-KWEEAMKLQH  189 (198)
Q Consensus       175 ~~--~~g-d~~~A~~l~~  189 (198)
                      ..  ..| |.++..++.+
T Consensus       243 ~~g~~tgidl~~l~~~a~  260 (337)
T PRK08195        243 RMGWETGVDLYKLMDAAE  260 (337)
T ss_pred             hcCCCCCcCHHHHHHHHH
Confidence            53  222 5555555444

>PLN02321 2-isopropylmalate synthase

Probab=80.91  E-value=27  Score=32.43  Aligned_cols=82  Identities=12%  Similarity=0.058  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CC-eEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET---KK-TIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~-pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ...|.+|-.+.+..+++.+   +. .|..+.   +..+.+..++.++.+.++|++.+.+.--. ...  +|.++.+.++.
T Consensus       201 l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTv-G~~--~P~~v~~li~~  277 (632)
T PLN02321        201 LRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTV-GYT--LPSEFGQLIAD  277 (632)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccc-cCC--CHHHHHHHHHH
Confidence            3578889888888888887   34 355554   44568899999999999999987665433 333  39999999999


Q ss_pred             HHccCC----CCEEEE
Q psy9711          78 VADNSP----IPVIIY   89 (198)
Q Consensus        78 i~~~~~----~pi~lY   89 (198)
                      +.+.++    +++-+|
T Consensus       278 l~~~~~~~~~v~i~vH  293 (632)
T PLN02321        278 IKANTPGIENVIISTH  293 (632)
T ss_pred             HHHhcCCCCCceEEEE
Confidence            988763    345554

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=80.84  E-value=29  Score=28.28  Aligned_cols=65  Identities=20%  Similarity=0.305  Sum_probs=49.5

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHcc-CCCC--EEE
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADN-SPIP--VII   88 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~-~~~p--i~l   88 (198)
                      ++-+|.++.+.+++.++...+.|||.+=+.-|+-.+..                .+-+.+++..+++.+. +++|  ++.
T Consensus        15 y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~   94 (256)
T TIGR00262        15 FVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT   94 (256)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            34578899999999999999999999999999843321                2356777888888765 6677  456


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      |.+|
T Consensus        95 Y~Np   98 (256)
T TIGR00262        95 YYNL   98 (256)
T ss_pred             eccH
Confidence            6667

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=80.73  E-value=26  Score=30.12  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEEEe
Q psy9711          14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYN   90 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~lYn   90 (198)
                      +.++.+++..++||++ |+.+.      +.++.+.++|+|++.+..--=-... +...-++...+|.++.  ++||+.  
T Consensus       211 ~~l~~lr~~~~~PvivKgv~~~------~dA~~a~~~G~d~I~vsnhGGr~ld-~~~~~~~~l~~i~~a~~~~i~vi~--  281 (351)
T cd04737         211 ADIEFIAKISGLPVIVKGIQSP------EDADVAINAGADGIWVSNHGGRQLD-GGPASFDSLPEIAEAVNHRVPIIF--  281 (351)
T ss_pred             HHHHHHHHHhCCcEEEecCCCH------HHHHHHHHcCCCEEEEeCCCCccCC-CCchHHHHHHHHHHHhCCCCeEEE--


Q ss_pred             CCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711          91 NTFVTNIDISVDTLVKLAHHENIRGV  116 (198)
Q Consensus        91 ~P~~tg~~l~~~~l~~L~~~p~i~gi  116 (198)
                         ..|+.=..+.++-|+-=-.-|++
T Consensus       282 ---dGGIr~g~Di~kaLalGA~~V~i  304 (351)
T cd04737         282 ---DSGVRRGEHVFKALASGADAVAV  304 (351)
T ss_pred             ---ECCCCCHHHHHHHHHcCCCEEEE

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG0327 Uncharacterized conserved protein [Function unknown]

Probab=80.73  E-value=29  Score=28.22  Aligned_cols=124  Identities=15%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCC-CcCCCCCHHHHHHHHHHHHc---cCCCCEEEEeCCCCcccc-cCHHHHHHHH--c
Q psy9711          37 RATIDLTQKAAKAGANAALILCPY-YFQKKMTEDLIYEHFISVAD---NSPIPVIIYNNTFVTNID-ISVDTLVKLA--H  109 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~-y~~~~~~~~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~~-l~~~~l~~L~--~  109 (198)
                      +-+.+.+..|.+.|||.+++--|. |.+..  ...+..+...+..   ..++.++.+|.|.-.... ....++.++.  +
T Consensus        44 d~t~~vi~~Ai~~~ad~ii~HHplif~~~~--~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~g~N~a~~~~l~~~~  121 (250)
T COG0327          44 DATLAVLDEAIELGADLLIVHHPLIFWPVK--SLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGGNDALAAALLGAE  121 (250)
T ss_pred             eCCHHHHHHHHHCCCCEEEEcCchhcCCCc--cccccchHHHHHHHHHhCCCeEEEcccccccccccccHHHHHHhcCcc
Confidence            444666778889999999999994 44433  2223333333333   247999999987542222 2344555554  2


Q ss_pred             C--C------CEEEEeeC-CHHHHHHHHhhc--------------CCCCeEEEecChh-hHHHHhhcCCCeEEeccc
Q psy9711         110 H--E------NIRGVKDT-DNIKLANMANQT--------------KDLNFSVFAGSAG-YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       110 ~--p------~i~giK~s-d~~~~~~~~~~~--------------~~~~~~v~~G~d~-~~~~~l~~G~~G~is~~~  162 (198)
                      .  +      .+.=+|.. ++..+.+.+++.              .-.++.|.+|... .+..+...|+|-+++|=-
T Consensus       122 ~~~~~~~~~g~~g~~~~~~~l~~l~~~i~~~l~~~~~~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~  198 (250)
T COG0327         122 ELPPFGEGLGRVGELKEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDL  198 (250)
T ss_pred             cccccccccceEEEeCCCCCHHHHHHHHHHHcCCCCEEEccCccccCceEEEEeCCChHHHHHHHHcCCCEEEECCC
Confidence            2  2      12223333 444443333211              1256888999884 555678899999999853

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=80.73  E-value=23  Score=27.94  Aligned_cols=73  Identities=11%  Similarity=0.187  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      -..++++-+.+++   +.-++...+..+.++..+..+...+.++|++++.+...      ++.....   +....++|++
T Consensus        13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~------~~~~~~~---l~~~~~ipvV   83 (269)
T cd06275          13 FFAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEY------DQPLLAM---LERYRHIPMV   83 (269)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCC------ChHHHHH---HHhcCCCCEE
Confidence            3445555554444   66666666666788888888888889999999986531      2222222   2234589999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      +.+.+
T Consensus        84 ~i~~~   88 (269)
T cd06275          84 VMDWG   88 (269)
T ss_pred             EEecc
Confidence            99875

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=80.66  E-value=8.2  Score=32.35  Aligned_cols=55  Identities=16%  Similarity=0.214  Sum_probs=28.3

Q ss_pred             CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711          34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII   88 (198)
Q Consensus        34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l   88 (198)
                      -+.+...+++++..+.|++++++.--.-..+++|.+|-.+..+.+.+.+  ++||+.
T Consensus        26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~   82 (309)
T cd00952          26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFV   82 (309)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence            3445555566666666666666554332222233666666655555544  255554

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=80.60  E-value=21  Score=28.31  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=18.2

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      |.|||-|..+ +.++.-+.++.+++.|.+.+-+.
T Consensus       133 R~~vIPg~nd-~~e~i~~ia~~l~~l~~~~~~ll  165 (213)
T PRK10076        133 RLPLIPGFTL-SRENMQQALDVLIPLGIKQIHLL  165 (213)
T ss_pred             EEEEECCCCC-CHHHHHHHHHHHHHcCCceEEEe
Confidence            5566666553 34555555566656666655444

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=80.58  E-value=30  Score=28.29  Aligned_cols=60  Identities=25%  Similarity=0.336  Sum_probs=34.2

Q ss_pred             eEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC-------HHHHHHHHHHHHccCCCCEEE
Q psy9711          26 TIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT-------EDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        26 pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~-------~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .+|+|- .-.+.+.+++.|+++++.|+.   +.-+++++|.-+       .++-+++.+++++..++|++-
T Consensus        27 ~~IAGpc~ie~~~~~~~~A~~lk~~~~k---~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t   94 (260)
T TIGR01361        27 IVIAGPCSVESEEQIMETARFVKEAGAK---ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVT   94 (260)
T ss_pred             EEEEeCCccCCHHHHHHHHHHHHHHHHH---hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEE
Confidence            356663 333566677777777777665   222433333201       344556666777777777764

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>TIGR03586 PseI pseudaminic acid synthase

Probab=80.55  E-value=15  Score=31.24  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      .+++.+.+. +.||+..+|..+.+|...-+....+.|..-++++ ...-|+.. ..+-=+.-...+-+..++||.+-+.
T Consensus       125 ~LL~~va~~-gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~-~~~~nL~~i~~lk~~f~~pVG~SDH  201 (327)
T TIGR03586       125 PLIRYVAKT-GKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAP-LEDANLRTIPDLAERFNVPVGLSDH  201 (327)
T ss_pred             HHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCC-cccCCHHHHHHHHHHhCCCEEeeCC
Confidence            345554443 8999999988888888888888888888545543 21111111 0222233344444555788877764

>PRK09485 mmuM homocysteine methyltransferase; Provisional

Probab=80.34  E-value=18  Score=30.28  Aligned_cols=43  Identities=12%  Similarity=0.022  Sum_probs=21.5

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhc
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKA   49 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~   49 (198)
                      +|.+|..+..+.-++..   ++-+++-=.-.+++|+....+.+++.
T Consensus       133 ~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~  178 (304)
T PRK09485        133 LSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEE  178 (304)
T ss_pred             CCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence            55566555544444332   44444433334566665555555533

>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3

Probab=80.32  E-value=36  Score=29.00  Aligned_cols=95  Identities=8%  Similarity=0.074  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc--CCC
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN--SPI   84 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~--~~~   84 (198)
                      ++-.+.++.++++.  ++.+++=+ ++-+.++++++++..++.|..  .+     -.|-  +.+=++-|+.|.++  +++
T Consensus       166 ~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~~-----EeP~--~~~d~~~~~~l~~~~~~~i  236 (352)
T cd03328         166 RRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVT--WF-----EEPV--SSDDLAGLRLVRERGPAGM  236 (352)
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcc--hh-----hCCC--ChhhHHHHHHHHhhCCCCC
Confidence            44455566666655  55666533 334667777777777665432  12     2222  22224666778888  778


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ||..=..      ..+...+.++.+  .-.++-+|-+
T Consensus       237 PIa~gE~------~~~~~~~~~li~~~a~div~~d~~  267 (352)
T cd03328         237 DIAAGEY------AYTLAYFRRLLEAHAVDVLQADVT  267 (352)
T ss_pred             CEEeccc------ccCHHHHHHHHHcCCCCEEecCcc
Confidence            8876331      246777888874  4577777777

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics

Probab=80.20  E-value=33  Score=28.84  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=63.8

Q ss_pred             CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcC------------CCCcCCCCCHH--HHH----------------
Q psy9711          24 KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILC------------PYYFQKKMTED--LIY----------------   72 (198)
Q Consensus        24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~------------P~y~~~~~~~~--~i~----------------   72 (198)
                      ++-++.|+ ++.....-++..+...++|+..+.+.-            +....  .|+.  +++                
T Consensus        99 kia~~l~iEg~~~l~~~~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~G--Lt~~G~~vv~~mn~lGmiiDvSH~s  176 (309)
T cd01301          99 KLAAIISIEGAHALGGDLALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGG--LTPFGKELVREMNRLGIIIDLSHLS  176 (309)
T ss_pred             CeEEEEEEeccccccCCHHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCC--CCHHHHHHHHHHHHcCCEEEcCCCC
Confidence            56777787 445666789999999999998777761            11111  2233  232                


Q ss_pred             -HHHHHHHccCCCCEEEEeCCCC----cccccCHHHHHHHHcCCCEEEEe
Q psy9711          73 -EHFISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLAHHENIRGVK  117 (198)
Q Consensus        73 -~y~~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~~~p~i~giK  117 (198)
                       +-|.++++.+..||+.-|.-.+    ...+++.+.+++|++...|+|+=
T Consensus       177 ~~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~  226 (309)
T cd01301         177 ERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVN  226 (309)
T ss_pred             HHHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEe
Confidence             2357777788899997664222    23479999999999999999974

Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=80.19  E-value=31  Score=28.27  Aligned_cols=89  Identities=18%  Similarity=0.304  Sum_probs=59.7

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHH-ccCCCCEEE--
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVA-DNSPIPVII--   88 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~-~~~~~pi~l--   88 (198)
                      ++-.|.++.+.+++.++...+.|||.+=+.-|+-.+..                .+.+++++..+++- +..+.|+++  
T Consensus        15 yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~   94 (259)
T PF00290_consen   15 YITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT   94 (259)
T ss_dssp             EEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe
Confidence            34579999999999999999999999999988754321                34567777788888 666888875  


Q ss_pred             EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      |-+|-   .....+-+.+-++--.+.|+-..
T Consensus        95 Y~N~i---~~~G~e~F~~~~~~aGvdGlIip  122 (259)
T PF00290_consen   95 YYNPI---FQYGIERFFKEAKEAGVDGLIIP  122 (259)
T ss_dssp             -HHHH---HHH-HHHHHHHHHHHTEEEEEET
T ss_pred             eccHH---hccchHHHHHHHHHcCCCEEEEc
Confidence            44442   12345555544444467888777

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=80.12  E-value=2.5  Score=34.55  Aligned_cols=62  Identities=23%  Similarity=0.325  Sum_probs=43.1

Q ss_pred             CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      +..||+-+--.|.        .+..++++.+++.||+++.+.. |.||..+      .++.+.+.+++++|+.-=|+
T Consensus        47 ~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs------~~dL~~v~~~~~~PvL~KDF  117 (254)
T PF00218_consen   47 RISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGGS------LEDLRAVRKAVDLPVLRKDF  117 (254)
T ss_dssp             S-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHH------HHHHHHHHHHSSS-EEEES-
T ss_pred             CCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCCC------HHHHHHHHHHhCCCcccccC
Confidence            7888887743332        5889999999999999999984 5565543      46778888889999987554

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=80.04  E-value=28  Score=27.55  Aligned_cols=73  Identities=7%  Similarity=0.072  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          12 KLKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        12 r~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      +.++.+.+.+++    +.-++...+..+.+...+..+.+.+.++|++++.++...       ...+..+.+ ...++|++
T Consensus        14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-------~~~~~~~~l-~~~~iPvv   85 (272)
T cd06301          14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTA-------ATAPIVKAA-NAAGIPLV   85 (272)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchh-------hhHHHHHHH-HHCCCeEE
Confidence            334444444433    566776666677888889999999999999999865421       111333443 46789999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      +.+.+
T Consensus        86 ~~~~~   90 (272)
T cd06301          86 YVNRR   90 (272)
T ss_pred             EecCC
Confidence            98863

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
3s5n_A	304	Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate		2e-33
3s5o_A	307	Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate		8e-33
1xky_A	301	Crystal Structure Of Dihydrodipicolinate Synthase D		1e-19
3hij_A	292	Crystal Structure Of Dihydrodipicolinate Synthase F		7e-19
3qfe_A	318	Crystal Structures Of A Putative Dihydrodipicolinat		5e-17
3pud_A	291	Crystal Structure Of Dhydrodipicolinate Synthase Fr		8e-14
2ehh_A	294	Crystal Structure Of Dihydrodipicolinate Synthase F		3e-12
3eb2_A	300	Crystal Structure Of Dihydrodipicolinate Synthase F		9e-12
3flu_A	297	Crystal Structure Of Dihydrodipicolinate Synthase F		1e-11
3h5d_A	311	Dihydrodipicolinate Synthase From Drug-Resistant St		3e-11
2a6n_A	292	Dihydrodipicolinate Synthase (E. Coli)- Mutant R138		1e-10
1dhp_A	292	Dihydrodipicolinate Synthase Length = 292		2e-10
1s5t_A	292	Crystal Structure Analysis Of A Mutant Of Dihydrodi		2e-10
3qze_A	314	Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolut		2e-10
2a6l_A	292	Dihydrodipicolinate Synthase (E. Coli)- Mutant R138		3e-10
2vc6_A	292	Structure Of Mosa From S. Meliloti With Pyruvate Bo		3e-10
3i7q_A	292	Dihydrodipicolinate Synthase Mutant - K161a Length		3e-10
1s5w_A	292	Crystal Structure Analysis Of A Mutant Of Dihydrodi		5e-10
1s5v_A	292	Crystal Structure Analysis Of A Mutant Of Dihydrodi		5e-10
2pur_A	292	Structure Of Dihydrodipicolinate Synthase Mutant Th		9e-10
3c0j_A	292	Structure Of E. Coli Dihydrodipicolinate Synthase C		9e-10
2ojp_A	292	The Crystal Structure Of A Dimeric Mutant Of Dihydr		1e-09
3g0s_A	316	Dihydrodipicolinate Synthase From Salmonella Typhim		2e-09
3den_A	292	Structure Of E. Coli Dhdps Mutant Y107w Length = 29		3e-09
3noe_A	292	Crystal Structure Of Dihydrodipicolinate Synthase F		3e-09
1xxx_A	303	Crystal Structure Of Dihydrodipicolinate Synthase (		3e-09
3ird_A	291	Structure Of Dihydrodipicolinate Synthase From Clos		6e-09
3m5v_A	301	Crystal Structure Of Dihydrodipicolinate Synthase F		7e-09
3l21_A	304	The Crystal Structure Of A Dimeric Mutant Of Dihydr		1e-08
3a5f_A	291	High-Resolution Structure Of Dhdps From Clostridium		3e-08
3ler_A	301	Crystal Structure Of Dihydrodipicolinate Synthase F		3e-08
3cpr_A	304	The Crystal Structure Of Corynebacterium Glutamicum		3e-08
2r8w_A	332	The Crystal Structure Of Dihydrodipicolinate Syntha		2e-07
2rfg_A	297	Crystal Structure Of Dihydrodipicolinate Synthase F		3e-07
3di0_A	295	Crystal Structure Of Dihydrodipicolinate Synthase F		3e-07
3pb0_A	300	Characterisation Of The First Monomeric Dihydrodipi		1e-06
2v8z_A	343	Crystal Structure Of Yage, A Prophage Protein Belon		1e-06
2yxg_A	289	Crystal Structure Of Dihyrodipicolinate Synthase (D		1e-06
3daq_A	292	Crystal Structure Of Dihydrodipicolinate Synthase F		1e-06
3nev_A	298	Crystal Structure Of Yage, A Prophage Protein From		1e-06
3pb2_A	300	Characterisation Of The First Monomeric Dihydrodipi		1e-06
1o5k_A	306	Crystal Structure Of Dihydrodipicolinate Synthase (		2e-06
2v9d_A	343	Crystal Structure Of Yage, A Prophage Protein Belon		2e-06
3n2x_A	298	Crystal Structure Of Yage, A Prophage Protein Belon		6e-06
2pcq_A	283	Crystal Structure Of Putative Dihydrodipicolinate S		5e-05
4dpp_A	360	The Structure Of Dihydrodipicolinate Synthase 2 Fro		3e-04
3si9_A	315	Crystal Structure Of Dihydrodipicolinate Synthase F		3e-04
2r91_A	286	Crystal Structure Of Kd(P)ga From T.Tenax Length =		8e-04

>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate Aldolase Length = 304

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T           +++ P Y++ +
Sbjct: 62  TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 121
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ VD +V L+ H NI G+KD+  D  +
Sbjct: 122 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTR 181
Query: 124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T+  +F V                 GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 182 IGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWED 241
Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P+  +
Sbjct: 242 AQKLQHRLIEPNAAV 256

>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate Aldolase Bound To Pyruvate Length = 307

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 112/195 (57%), Gaps = 4/195 (2%)
Query: 8   TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T           +++ P Y++ +
Sbjct: 65  TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 124
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
           M+   +  H+  VAD SPIPV++Y+    T +D+ VD +V L+ H NI G+ D+  D  +
Sbjct: 125 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTR 184
Query: 124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           +  + ++T+  +F V                 GG+ AL+ VLG  +C+L  L   G+WE+
Sbjct: 185 IGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWED 244
Query: 184 AMKLQHRLVKPDVTL 198
           A KLQHRL++P+  +
Sbjct: 245 AQKLQHRLIEPNAAV 259

>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2 (Ba3935) From Bacillus Anthracis At 1.94a Resolution. Length = 301

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 107/192 (55%), Gaps = 11/192 (5%)
Query: 8   TEEEKLK----IISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQ 63
           T EEK+     ++S +  + +  +IAGT   +T A+IDLT+          +++ PYY  
Sbjct: 63  TSEEKVALYRHVVSVV--DKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY-- 118
Query: 64  KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DN 121
            K +++ +Y+HF ++A+++P+PV++YN    + + ISVDT+V+L+  ENI  +KD   D 
Sbjct: 119 NKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDV 178
Query: 122 IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKW 181
           + +  +  +T D +F+V+                G ++  S V+G  + E+    +AG++
Sbjct: 179 LTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGEF 237
Query: 182 EEAMKLQHRLVK 193
           ++A KL   LV+
Sbjct: 238 KKAQKLHQLLVR 249

>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Bacillus Anthracis In Complex With Its Substrate, Pyruvate Length = 292

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 106/192 (55%), Gaps = 11/192 (5%)
Query: 8   TEEEKLK----IISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQ 63
           T EEK+     ++S +  + +  +IAGT   +T A+IDLT+          +++ PYY  
Sbjct: 54  TSEEKVALYRHVVSVV--DKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY-- 109
Query: 64  KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DN 121
            K +++ +Y+HF ++A+++P+PV++YN    + + ISVDT+V+L+  ENI  + D   D 
Sbjct: 110 NKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIXDAGGDV 169
Query: 122 IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKW 181
           + +  +  +T D +F+V+                G ++  S V+G  + E+    +AG++
Sbjct: 170 LTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGEF 228
Query: 182 EEAMKLQHRLVK 193
           ++A KL   LV+
Sbjct: 229 KKAQKLHQLLVR 240

>pdb|3QFE|A Chain A, Crystal Structures Of A Putative Dihydrodipicolinate Synthase Family Protein From Coccidioides Immitis Length = 318

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 7/195 (3%)
Query: 2   SNSFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
           + +F  T EE+ ++I+T R+       I+AG    STR  ++             L+L P
Sbjct: 56  AEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115
Query: 60  YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN-IDISVDTLVKLAH-HENIRGVK 117
            YF K  T  +I   F  V+  SP+PV+IYN   V N ID+  D +  +A  + N+ GVK
Sbjct: 116 AYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVK 175
Query: 118 DT--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDL 175
            T     K+  +A       FSVF               AG I A + V    + ++Y+L
Sbjct: 176 LTCASVGKITRLAATLPPAAFSVFGGQSDFLIGGLSVGSAGCIAAFANVFPKTVSKIYEL 235
Query: 176 AKAGKWEEAMKLQHR 190
            KAGK ++AM+L HR
Sbjct: 236 YKAGKVDQAMEL-HR 249

>pdb|3PUD|A Chain A, Crystal Structure Of Dhydrodipicolinate Synthase From Acinetobacter Baumannii At 2.8a Resolution Length = 291

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 7   STEEEKLKIISTLRQETKK-TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           S EE    I   +R   K+  IIAGT   STR  I+LT+          L++ PYY   K
Sbjct: 52  SMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYY--NK 109
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
            T++ +Y+H+ ++A+   +P+I+YN    T +D+S DT V+LA   NI G+KD
Sbjct: 110 PTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKD 162

>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Aquifex Aeolicus Length = 294

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 9   EEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTE 68
           E EK+   +  R   +  +IAGT   +T   + LT           L++ PYY   K T+
Sbjct: 54  EHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY--NKPTQ 111
Query: 69  DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD-TDNIKLAN 126
             +YEHF +VA    IP+IIYN    T ++ISVDT+ KLA   ENI   K+ T N+   +
Sbjct: 112 RGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRIS 171
Query: 127 MANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMK 186
              +    +FSV                 G I+  + V+   + EL   A  G +  A +
Sbjct: 172 EIVKRLGESFSVLSGDDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGDFRRARE 231
Query: 187 LQHRL 191
           + + L
Sbjct: 232 IHYYL 236

>pdb|3EB2|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Rhodopseudomonas Palustris At 2.0a Resolution Length = 300

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 4   SFKSTEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYF 62
           ++  T + +  + +T+    ++  ++AG    S    +   +          L +   YF
Sbjct: 52  AYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYF 111
Query: 63  QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD--TD 120
             K  +  I  +F ++AD   IPV+IY N      D+++D + +LA H  IR +KD  T+
Sbjct: 112 PLKDAQ--IESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTN 169
Query: 121 NIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPIC-------ELY 173
             +L ++ N+  D    VF                GG+  ++    GP C        LY
Sbjct: 170 TGRLLSIINRCGD-ALQVFSASAHIPAAVMLI---GGVGWMA----GPACIAPRQSVALY 221
Query: 174 DLAKAGKWEEAMKLQHRLVK 193
           +L KA +W+EA+ LQ +L +
Sbjct: 222 ELCKAQRWDEALMLQRKLWR 241

>pdb|3FLU|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From The Pathogen Neisseria Meningitidis Length = 297

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 7   STEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           S EE    I + ++   K+  +IAGT   +T   I L+Q          L + PYY   K
Sbjct: 58  SVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY--NK 115
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----D 120
            +++ IY+HF ++A+ + IP+IIYN    T + ++ DT+++LA   NI GVK+       
Sbjct: 116 PSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGS 175
Query: 121 NIKLANMANQ 130
           NI+L N A +
Sbjct: 176 NIELINRAPE 185

>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant Streptococc Pneumoniae Length = 311

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 8   TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLT-QXXXXXXXXXXLILCPYYFQK 64
           T +E+L++ + +++    +  +IAG     TR +I+   +          L + PYY   
Sbjct: 58  THDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYY--N 115
Query: 65  KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKL 124
           K +++ +Y+HF ++AD S +P+IIYN      ++++ +T+++LA H NI GVK+  +  L
Sbjct: 116 KPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTS--L 173
Query: 125 ANMAN--QTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWE 182
           ANMA   + K   F ++                G I+  S   G  + E++        +
Sbjct: 174 ANMAYLIEHKPEEFLIYTGEDGDAFHAMNLGADGVISVASHTNGDEMHEMFTAIAESDMK 233
Query: 183 EAMKLQHRLV 192
           +A  +Q + +
Sbjct: 234 KAAAIQRKFI 243

>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a Length = 292

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+K+ T N+   N   +    +F +       
Sbjct: 131 ILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase Length = 292

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+K+ T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of Dihydrodipicolinate Synthase--Residue Thr44 To Val44 Length = 292

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+K+ T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|3QZE|A Chain A, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution Length = 314

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 10  EEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMT 67
           EE +++I  +  + K  I  IAGT   STR  + LT+          L++ PYY   K T
Sbjct: 76  EEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYY--NKPT 133
Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLAN 126
           ++ +Y+HF  +A+   IP I+YN    T+ D+  +T+ +L+   NI G+K+ T +++ A 
Sbjct: 134 QEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAK 193
Query: 127 MANQTKDLNFSVF 139
              +    +F V+
Sbjct: 194 EVIERVGKDFLVY 206

>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h Length = 292

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+K+ T N+   N   +    +F +       
Sbjct: 131 ILYNVPSHTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound Length = 292

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)
Query: 2   SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYY 61
           S +   +E E++  I+      +  +IAG    ST   I   +          LI+ PYY
Sbjct: 47  SPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106
Query: 62  FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD-T 119
              K T++ IY+HF ++   S IP+I+YN    + I+I V+TL ++     N++GV D T
Sbjct: 107 --NKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT 164
Query: 120 DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAG 179
            N+   ++       +F++                 G I+  + V      +       G
Sbjct: 165 GNLLRPSLERMACGEDFNLLTGEDGTALGYMAHGGHGCISVTANVAPALCADFQQACLNG 224
Query: 180 KWEEAMKLQHRLV 192
            +  A+KLQ RL+
Sbjct: 225 DFAAALKLQDRLM 237

>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a Length = 292

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+++ T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIREATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133 Length = 292

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I++N    T  D+  +T+ +LA  +NI G+K+ T N+   N   +    +F +       
Sbjct: 131 ILFNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107 Length = 292

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PY+   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYF--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+K+ T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser At 1.7 A. Length = 292

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+ + T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Complexed With Hydroxypyruvate Length = 292

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+ + T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y Length = 292

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+ + T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQYGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLM 237

>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium Lt2 Length = 316

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PYY   + T++ +++HF ++A+++ +P 
Sbjct: 97  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPTQEGLFQHFKAIAEHTDLPQ 154
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI  +K+ T N+   +   +    +F +       
Sbjct: 155 ILYNVPSRTGCDMLPETVGRLAEIKNIIAIKEATGNLTRVHQIKELVSDDFILLSGDDAS 214
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G++ EA  +  RL+
Sbjct: 215 ALDFMQLGGHGVISVTANVAAREMADMCKLAAEGQFAEARAINQRLM 261

>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w Length = 292

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   +T   I LTQ          L + PY+   + +++ +Y+HF ++A+++ +P 
Sbjct: 73  VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYW--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
           I+YN    T  D+  +T+ +LA  +NI G+ + T N+   N   +    +F +       
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
                     G I+  + V    + ++  LA  G + EA  +  RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237

>pdb|3NOE|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa Length = 292

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAGT   STR  + LT+          L++ PYY   K T++ +Y+HF  +A+   IP 
Sbjct: 73  VIAGTGANSTREAVALTEAAKSGGADACLLVTPYY--NKPTQEGMYQHFRHIAEAVAIPQ 130
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVF 139
           I+YN    T+ D+  +T+ +L+   NI G+K+ T +++ A    +    +F V+
Sbjct: 131 ILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVY 184

>pdb|1XXX|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa, Rv2753c) From Mycobacterium Tuberculosis Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 2   SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
             S  +T+ EK++++  + +    +  +IAG     T  +I L +          L++ P
Sbjct: 59  GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 118
Query: 60  YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
           YY   K  +  +  HF +VAD + +P+++Y+    + + I  DT+  LA H NI GVKD
Sbjct: 119 YY--SKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKD 175

>pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium Botulinum Length = 291

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 17/190 (8%)
Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           TE E+ + I  +  +  K I  IAGT   +T A+I +++          L++ PYY   K
Sbjct: 52  TETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY--NK 109
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLA 125
            T+  + +HF +V+D    P+IIYN    T ++I+  TL +L   +NI  VK+     ++
Sbjct: 110 TTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVKEASG-NIS 168
Query: 126 NMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPI-------CELYDLAKA 178
            +A Q K L                     GGI  +S VL   I       CELY     
Sbjct: 169 QIA-QIKALCGDKLDIYSGNDDQIIPILALGGIGVIS-VLANVIPEDVHNMCELY---LN 223
Query: 179 GKWEEAMKLQ 188
           GK  EA+K+Q
Sbjct: 224 GKVNEALKIQ 233

>pdb|3M5V|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Campylobacter Jejuni Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 23  TKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNS 82
           TK  ++AG    +T   + L +          L + PYY   K T+  +YEH+ ++A + 
Sbjct: 76  TKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYY--NKPTQQGLYEHYKAIAQSV 133
Query: 83  PIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT 119
            IPV++YN    T  +IS DT++KL    ENI GVK+ 
Sbjct: 134 DIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEA 171

>pdb|3L21|A Chain A, The Crystal Structure Of A Dimeric Mutant Of Dihydrodipicolinate Synthase (Dapa, Rv2753c) From Mycobacterium Tuberculosis - Dhdps- A204r Length = 304

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 2   SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
             S  +T+ EK++++  + +    +  +IAG     T  +I L +          L++ P
Sbjct: 60  GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119
Query: 60  YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
           YY   K  +  +  HF +VAD + +P+++Y+    + + I  DT+  LA H NI GV D
Sbjct: 120 YY--SKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXD 176

>pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium Botulinum In Complex With Pyruvate Length = 291

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 17/190 (8%)
Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           TE E+ + I  +  +  K I  IAGT   +T A+I +++          L++ PYY   K
Sbjct: 52  TETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY--NK 109
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLA 125
            T+  + +HF +V+D    P+IIYN    T ++I+  TL +L   +NI  V +     ++
Sbjct: 110 TTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEASG-NIS 168
Query: 126 NMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPI-------CELYDLAKA 178
            +A Q K L                     GGI  +S VL   I       CELY     
Sbjct: 169 QIA-QIKALCGDKLDIYSGNDDQIIPILALGGIGVIS-VLANVIPEDVHNMCELY---LN 223
Query: 179 GKWEEAMKLQ 188
           GK  EA+K+Q
Sbjct: 224 GKVNEALKIQ 233

>pdb|3LER|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 301

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 23  TKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNS 82
           TK  ++AG    +T   + L +          L + PYY   K T+  +YEH+ ++A + 
Sbjct: 76  TKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYY--NKPTQQGLYEHYKAIAQSV 133
Query: 83  PIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT 119
            IPV++YN    T  +IS DT++KL    ENI GV + 
Sbjct: 134 DIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVXEA 171

>pdb|3CPR|A Chain A, The Crystal Structure Of Corynebacterium Glutamicum Dihydrodipicolinate Synthase To 2.2 A Resolution Length = 304

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 2   SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
             S  +T  EKL+++  +R+E   +  +IAG    +TR +++L +          L++ P
Sbjct: 61  GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120
Query: 60  YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
           YY   K +++ +  HF ++A  + +P+ +Y+    + I I  DT+ +L+    I  V D
Sbjct: 121 YY--SKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAVXD 177

>pdb|2R8W|A Chain A, The Crystal Structure Of Dihydrodipicolinate Synthase (Atu0899) From Agrobacterium Tumefaciens Str. C58 Length = 332

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK-----DTD 120
           +T++  Y HF +VA  + +P+ IYNN   T    S + LV+LA+  NIR +K     D D
Sbjct: 143 LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKXPLPADAD 202
Query: 121 NI-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLG---GPICELYDLA 176
              +LA +  +  D +F++                AGG    S V G    P  +L   A
Sbjct: 203 YAGELARLRPKLSD-DFAI---GYSGDWGCTDATLAGGDTWYSVVAGLLPVPALQLXRAA 258
Query: 177 KAGKWEEAMKL 187
           +AG  EEA +L
Sbjct: 259 QAGNAEEAKRL 269

>pdb|2RFG|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Hahella Chejuensis At 1.5a Resolution Length = 297

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           TEEE  ++++ + ++ +    +IAG    +    +   Q          L +  YY   +
Sbjct: 51  TEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY--NR 108
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119
            +++ +Y+HF  V D   IP+I+YN      +DI  +T+ +LA    I GVKD 
Sbjct: 109 PSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDA 162

>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Staphylococcus Aureus Length = 295

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 8   TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           T +EK +I+ T+    + +  +IAGT    T  +I  +           +++ PYY   K
Sbjct: 54  TTDEKERILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY--NK 111
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
             +  + +HF ++AD   +PV++YN    TN+ I  +T+  L+ H  I  +KD T++ + 
Sbjct: 112 TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEY 171
Query: 125 ANMANQTKDLN-FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAG 179
                +  D N F+++                G I+ ++ V+      LYD  ++G
Sbjct: 172 LEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSG 227

>pdb|3PB0|A Chain A, Characterisation Of The First Monomeric Dihydrodipicolinate Synthase Variant Reveals Evolutionary Insights Length = 300

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 9   EEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKM 66
           E+E+ K++S   +  + K  +I G    ST  T+ L +          L++ PYY   K 
Sbjct: 58  EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NKP 115
Query: 67  TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLAN 126
           T++ +Y+H+  +++ + + +++YN    T +++  +T  ++A       +K+   IK AN
Sbjct: 116 TQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD-----LKNVVGIKEAN 170
Query: 127 MANQTKDLNFSV-------FXXXXXXXXXXXXXXCAGG---INALSAVLGGPICELYDLA 176
            A    D   S+       F              CAGG   I+ +S V    + EL    
Sbjct: 171 PAAAQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEY 230
Query: 177 KAGKWEEAMKLQHRLVKP 194
            +G  E++ ++ HR ++P
Sbjct: 231 FSGNLEKSREV-HRKLRP 247

>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12 Length = 343

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 2   SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
              F     E+ K I+       + +  ++ GT   + R TI+L+Q          +++ 
Sbjct: 75  GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 134
Query: 59  PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
           PYY+  K++E  +  +F  VAD+  +PV++YN   +T  D++   +  LA    NI G+K
Sbjct: 135 PYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIK 192
Query: 118 DT 119
           DT
Sbjct: 193 DT 194

>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa) Length = 289

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +IAG     T   I+L+           L + PYY   K T++ + +HF  VA++  +P+
Sbjct: 72  VIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY--NKPTQEGLRKHFGKVAESINLPI 129
Query: 87  IIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDTDNIKLANMANQTKDLNFSVFXXXXXX 145
           ++YN    T +++   T+  LA  + NI  VK+  N  L+ ++    D   +V       
Sbjct: 130 VLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEA-NPNLSQVSELIHDAKITVLSGNDEL 188
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191
                     G I+ ++ ++     E+ + A  G +E+A ++ ++L
Sbjct: 189 TLPIIALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKL 234

>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Methicillin- Resistant Staphylococcus Aureus Length = 292

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Query: 7   STEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           +T+E++L + + +    K+  +IAGT    T  +I  +           +++ PYY   K
Sbjct: 53  TTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY--NK 110
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
             +  + +HF ++AD   +PV++YN    TN+ I  +T+  L+ H  I  +KD T++ + 
Sbjct: 111 TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEY 170
Query: 125 ANMANQTKDLN-FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAG 179
                +  D N F+++                G I+ ++ V+      LYD  ++G
Sbjct: 171 LEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSG 226

>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli K12 In Complex With Kdgal Length = 298

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 2   SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
              F     E+ K I+       + +  ++ GT   + R TI+L+Q          +++ 
Sbjct: 46  GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 105
Query: 59  PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
           PYY+  K++E  +  +F  VAD+  +PV++YN   +T  D++   +  LA    NI G+K
Sbjct: 106 PYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIK 163
Query: 118 DT 119
           DT
Sbjct: 164 DT 165

>pdb|3PB2|A Chain A, Characterisation Of The First Monomeric Dihydrodipicolinate Synthase Variant Reveals Evolutionary Insights Length = 300

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 9   EEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKM 66
           E+E+ K++S   +  + K  +I G    ST  T+ L +          L++ PYY   K 
Sbjct: 58  EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NKP 115
Query: 67  TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVK----DTDN 121
           T++ +Y+H+  +++ + + +++YN    T +++  +T  ++A   +N+ G+K    D D 
Sbjct: 116 TQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQ 175
Query: 122 I-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAV 164
           I +  ++  Q +    S F              CAGG   +S V
Sbjct: 176 IDRTVSLTKQAR----SDFMVWSGNDDRTFYLLCAGGDGVISVV 215

>pdb|1O5K|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521) From Thermotoga Maritima At 1.80 A Resolution Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 9   EEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKM 66
           E+E+ K++S   +  + K  +I G    ST  T+ L +          L++ PYY   K 
Sbjct: 64  EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NKP 121
Query: 67  TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV----KDTDN 121
           T++ +Y+H+  +++ + + +++YN    T +++  +T  ++A   +N+ G+     D D 
Sbjct: 122 TQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQ 181
Query: 122 I-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGG---INALSAVLGGPICELYDLAK 177
           I +  ++  Q +    S F              CAGG   I+ +S V    + EL     
Sbjct: 182 IDRTVSLTKQAR----SDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYF 237
Query: 178 AGKWEEAMKLQHRLVKP 194
           +G  E++ ++ HR ++P
Sbjct: 238 SGNLEKSREV-HRKLRP 253

>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12 Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 2   SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
              F     E+ K I+       + +  ++ GT   + R TI+L+Q          +++ 
Sbjct: 75  GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 134
Query: 59  PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
           PYY+  K++E  +  +F  VAD+  +PV +YN   +T  D++   +  LA    NI G+K
Sbjct: 135 PYYW--KVSEANLIRYFEQVADSVTLPVXLYNFPALTGQDLTPALVKTLADSRSNIIGIK 192
Query: 118 DT 119
           DT
Sbjct: 193 DT 194

>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To The Dihydrodipicolinic Acid Synthase Family From E. Coli K12 In Complex With Pyruvate Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 2   SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
              F     E+ K I+       + +  ++ GT   + R TI+L+Q          +++ 
Sbjct: 46  GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 105
Query: 59  PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
           PYY+  K++E  +  +F  VAD+  +PV++YN   +T  D++   +  LA    NI G+ 
Sbjct: 106 PYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIX 163
Query: 118 DT 119
           DT
Sbjct: 164 DT 165

>pdb|2PCQ|A Chain A, Crystal Structure Of Putative Dihydrodipicolinate Synthase (Ttha0737) From Thermus Thermophilus Hb8 Length = 283

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 8   TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMT 67
           T EE+ + +  LR   +K  + G   E+                   L   P Y+   + 
Sbjct: 48  TPEERARGLRALR--PRKPFLVGLXEETLPQAEGALLEAKAAGAXALLATPPRYYHGSLG 105
Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANM 127
             L+  ++ ++A+  P+   +Y+    T +D+ ++ +  LA H N+ G+KD+    L+ +
Sbjct: 106 AGLL-RYYEALAEKXPL--FLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSG-DLSRI 161
Query: 128 A-NQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMK 186
           A  Q +   F V+                GGI A + +       L D  + G+  EA +
Sbjct: 162 AFYQARLQEFRVYTGHAPTFLGALALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQE 221
Query: 187 LQHRL 191
           LQ +L
Sbjct: 222 LQKKL 226

>pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From Arabidopsis Thaliana Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 27  IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
           +I  T   STR  I  T+          L + PYY  K   E LI  HF SV    P   
Sbjct: 131 VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY-GKTSIEGLI-AHFQSVLHMGP--T 186
Query: 87  IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
           IIYN    T  DI    + KL+ + N+ GVK+
Sbjct: 187 IIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKE 218

>pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From Bartonella Henselae Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
           T EE  +II    ++  K   ++AG    ST   ++L +          L++ PYY   +
Sbjct: 73  THEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY--NR 130
Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD 118
             +  +Y HF S+A    IP+IIYN    + ID++V+T+  L    +NI GVKD
Sbjct: 131 PNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKD 184

>pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax Length = 286

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 27/193 (13%)
Query: 10  EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTED 69
           +EK+++        ++ I+      +  A I L +            L PYYF  +++E 
Sbjct: 51  QEKMELTDAATSAARRVIVQVASLNADEA-IALAKYAESRGAEAVASLPPYYF-PRLSER 108
Query: 70  LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN-------- 121
            I ++F  +     IPV +YN       D+      +L     IRGVKDT+         
Sbjct: 109 QIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKELG---CIRGVKDTNESLAHTLAY 165
Query: 122 ---IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKA 178
              +  A + N +  L F+ F               A   N L  +L G    + D   A
Sbjct: 166 KRYLPQARVYNGSDSLVFASF-------AVRLDGVVASSANYLPELLAG----IRDAVAA 214
Query: 179 GKWEEAMKLQHRL 191
           G  E A  LQ  L
Sbjct: 215 GDIERARSLQFLL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	8e-58
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	7e-49
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	3e-48
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	2e-46
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	6e-46
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	3e-44
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	8e-44
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	5e-43
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	3e-42
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	7e-42
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	1e-41
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	3e-41
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	4e-41
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	3e-40
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	4e-40
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	9e-40
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	1e-39
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	1e-39
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	1e-39
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	2e-39
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	3e-39
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	3e-39
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	9e-39
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	9e-39
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	1e-38
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	3e-38
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	6e-38
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	7e-38
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	1e-37
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	2e-37
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	2e-37
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	1e-36
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	7e-35
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	1e-33
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	8e-33
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	3e-29
4dnh_A	396	Uncharacterized protein; structural genomics, PSI-	3e-04

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Length = 318

 Score =  183 bits (467), Expect = 8e-58
 Identities = 70/194 (36%), Positives = 103/194 (53%), Gaps = 10/194 (5%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+ ++I+T R+       I+AG    STR  ++    A+ AGAN  L+L P YF K 
Sbjct: 62  TREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKA 121

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTF---VTNIDISVDTLVKLAH-HENIRGVKDT-- 119
            T  +I   F  V+  SP+PV+IYN  F      ID+  D +  +A  + N+ GVK T  
Sbjct: 122 TTPPVIKSFFDDVSCQSPLPVVIYN--FPGVCNGIDLDSDMITTIARKNPNVVGVKLTCA 179

Query: 120 DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAG 179
              K+  +A       FSVF G + +L+ GL VG AG I A + V    + ++Y+L KAG
Sbjct: 180 SVGKITRLAATLPPAAFSVFGGQSDFLIGGLSVGSAGCIAAFANVFPKTVSKIYELYKAG 239

Query: 180 KWEEAMKLQHRLVK 193
           K ++AM+L  +   
Sbjct: 240 KVDQAMELHRKAAL 253

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} Length = 300

 Score =  160 bits (406), Expect = 7e-49
 Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
              ++  ++    +  ++ +  +AG    S    +   +   K GA+  L +   YF   
Sbjct: 55  GTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYF--P 112

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNI-K 123
           + +  I  +F ++AD   IPV+IY N      D+++D + +LA H  IR +KD + N  +
Sbjct: 113 LKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTNTGR 172

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           L ++ N+  D    VF+ SA    + +L+G  G +   + +       LY+L KA +W+E
Sbjct: 173 LLSIINRCGD-ALQVFSASAHIPAAVMLIGGVGWMAGPACIAPRQSVALYELCKAQRWDE 231

Query: 184 AMKLQHRL 191
           A+ LQ +L
Sbjct: 232 ALMLQRKL 239

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} PDB: 3s5n_A Length = 307

 Score =  158 bits (402), Expect = 3e-48
 Identities = 78/194 (40%), Positives = 129/194 (66%), Gaps = 10/194 (5%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  E+L+++S +RQ   K   ++AG+ CEST+AT+++T   A+ GA+AA+++ P Y++ +
Sbjct: 65  TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 124

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKDT--D 120
           M+   +  H+  VAD SPIPV++Y+   V   T +D+ VD +V L+ H NI G+ D+  D
Sbjct: 125 MSSAALIHHYTKVADLSPIPVVLYS---VPANTGLDLPVDAVVTLSQHPNIVGMXDSGGD 181

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
             ++  + ++T+  +F V AGSAG+L++   +G  GG+ AL+ VLG  +C+L  L   G+
Sbjct: 182 VTRIGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQ 241

Query: 181 WEEAMKLQHRLVKP 194
           WE+A KLQHRL++P
Sbjct: 242 WEDAQKLQHRLIEP 255

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Length = 288

 Score =  153 bits (388), Expect = 2e-46
 Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 8   TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           +++EK + ++ L   T K +I      +    ++L + + +          PYYF  ++ 
Sbjct: 50  SKDEKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYF-PRLP 107

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNI-KLA 125
           E  + +++  +A  S   + IYN    T  DI    L  L     ++G+KD   ++    
Sbjct: 108 EKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSLP----VKGIKDTNQDLAHSL 163

Query: 126 NMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAM 185
                       V+ GS   +    L+   G + + +  +   I +  DL K GK ++A+
Sbjct: 164 EYKLNLPG--VKVYNGSNTLIYY-SLLSLDGVVASFTNFIPEVIVKQRDLIKQGKLDDAL 220

Query: 186 KLQHRLV 192
           +LQ  + 
Sbjct: 221 RLQELIN 227

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Length = 293

 Score =  152 bits (386), Expect = 6e-46
 Identities = 41/188 (21%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           + EEK +I    + E K    +IA     + +  ++L + A + G +    + P+Y   K
Sbjct: 55  STEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY--YK 112

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNI-K 123
            +   I  ++ ++   +   +I+Y+  F+T +++ ++   +L  +  + GVK    +   
Sbjct: 113 FSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYL 172

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
           L  +     +    ++AG    +L    +G  G I +   V G    ++++L KAGK +E
Sbjct: 173 LERLKKAYPN--HLIWAGFDEMMLPAASLGVDGAIGSTFNVNGVRARQIFELTKAGKLKE 230

Query: 184 AMKLQHRL 191
           A+++QH  
Sbjct: 231 ALEIQHVT 238

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Length = 343

 Score =  149 bits (378), Expect = 3e-44
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 15/194 (7%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
             EE+  I         + +  + GT   + R TI+L+Q A +AGA+  +++ PYY   K
Sbjct: 82  GAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY--WK 139

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAH-HENIRGVKD-TD 120
           ++E  +  +F  VAD+  +PV++YN       T  D++   +  LA    NI G+KD  D
Sbjct: 140 VSEANLIRYFEQVADSVTLPVMLYN---FPALTGQDLTPALVKTLADSRSNIIGIKDTID 196

Query: 121 NI-KLANMANQTKDL--NFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAK 177
           ++  L +M +  K    +F+V  G   +L + LL+G  G I+A           L    +
Sbjct: 197 SVAHLRSMIHTVKGAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWR 256

Query: 178 AGKWEEAMKLQHRL 191
            G   +A      L
Sbjct: 257 DGDVAKAAGYHQTL 270

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Length = 293

 Score =  146 bits (372), Expect = 8e-44
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 9/186 (4%)

Query: 8   TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           + EEKL+ +  +   T K II      +    I L + +            PYY+  +M+
Sbjct: 50  SPEEKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYP-RMS 107

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNI-KLA 125
           E  + ++F ++ + SP PV +YN    T  DI      ++       GVKD  +NI    
Sbjct: 108 EKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVKDTIENIIHTL 164

Query: 126 NMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAM 185
           +      +    V++GS   + +    G  G + A S  L      +  LA   K +EA+
Sbjct: 165 DYKRLNPN--MLVYSGSDMLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAMERKIDEAL 222

Query: 186 KLQHRL 191
           KLQ   
Sbjct: 223 KLQFLH 228

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Length = 286

 Score =  144 bits (366), Expect = 5e-43
 Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 15/189 (7%)

Query: 8   TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           + +EK+++        ++ +I      +    I L + A   GA A   L PYYF +  +
Sbjct: 49  SLQEKMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRL-S 106

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDNI- 122
           E  I ++F  +     IPV +YN          D+      +L     IRGVKD  +++ 
Sbjct: 107 ERQIAKYFRDLCSAVSIPVFLYN---YPAAVGRDVDARAAKELG---CIRGVKDTNESLA 160

Query: 123 KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWE 182
                          V+ GS   + +   V   G + + +  L   +  + D   AG  E
Sbjct: 161 HTLAYKRYLPQ--ARVYNGSDSLVFASFAVRLDGVVASSANYLPELLAGIRDAVAAGDIE 218

Query: 183 EAMKLQHRL 191
            A  LQ  L
Sbjct: 219 RARSLQFLL 227

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Length = 332

 Score =  143 bits (363), Expect = 3e-42
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 11/192 (5%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE+ + I       +     +AG     T   + L + A  AGA+A L+    Y    
Sbjct: 85  TREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSY--TP 142

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIK-- 123
           +T++  Y HF +VA  + +P+ IYNN   T    S + LV+LA+  NIR +K        
Sbjct: 143 LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPLPADAD 202

Query: 124 ----LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAG 179
               LA +  +  D +F++            L G     + ++ +L  P  +L   A+AG
Sbjct: 203 YAGELARLRPKLSD-DFAIGYSGDWGCTDATLAGGDTWYSVVAGLLPVPALQLMRAAQAG 261

Query: 180 KWEEAMKLQHRL 191
             EEA +L    
Sbjct: 262 NAEEAKRLDATF 273

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Length = 315

 Score =  142 bits (360), Expect = 7e-42
 Identities = 41/188 (21%), Positives = 84/188 (44%), Gaps = 6/188 (3%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           ++ E  +++    +     +  I      +T  T+   Q A   GA A ++L   Y   K
Sbjct: 75  SDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISY--WK 132

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKD-TDNIK 123
           + E  +++H+ +V +   +PV++YNN   + ID+SV+ ++++    +N+  VK+ T +I+
Sbjct: 133 LNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKESTGDIQ 192

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEE 183
             +      +     + G     L   + G  G  +A   ++     +LY     G  E+
Sbjct: 193 RMHKLRLLGEGRVPFYNGCNPLALEAFVAGAKGWCSAAPNLIPTLNGQLYQAVLDGDLEK 252

Query: 184 AMKLQHRL 191
           A  L +R 
Sbjct: 253 ARALFYRQ 260

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Length = 301

 Score =  141 bits (358), Expect = 1e-41
 Identities = 65/191 (34%), Positives = 116/191 (60%), Gaps = 13/191 (6%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EEK+ +   +     K   +IAGT   +T A+IDLT+KA + G +A +++ PYY   K
Sbjct: 63  TSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY--NK 120

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            +++ +Y+HF ++A+++P+PV++YN   V   + + ISVDT+V+L+  ENI  +KD   +
Sbjct: 121 PSQEGMYQHFKAIAESTPLPVMLYN---VPGRSIVQISVDTVVRLSEIENIVAIKDAGGD 177

Query: 122 I-KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           +  +  +  +T D +F+V++G  G  L  + VG  G ++  S V+G  + E+    +AG+
Sbjct: 178 VLTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGE 236

Query: 181 WEEAMKLQHRL 191
           +++A KL   L
Sbjct: 237 FKKAQKLHQLL 247

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Length = 311

 Score =  140 bits (356), Expect = 3e-41
 Identities = 50/191 (26%), Positives = 99/191 (51%), Gaps = 13/191 (6%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAK-AGANAALILCPYYFQK 64
           T +E+L++ + +++       +IAG     TR +I+  ++ A+  G  A L + PYY   
Sbjct: 58  THDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYY--N 115

Query: 65  KMTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TD 120
           K +++ +Y+HF ++AD S +P+IIYN   +     ++++ +T+++LA H NI GVK+ T 
Sbjct: 116 KPSQEGMYQHFKAIADASDLPIIIYN---IPGRVVVELTPETMLRLADHPNIIGVKECTS 172

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
              +A +     +  F ++ G  G     + +G  G I+  S   G  + E++       
Sbjct: 173 LANMAYLIEHKPE-EFLIYTGEDGDAFHAMNLGADGVISVASHTNGDEMHEMFTAIAESD 231

Query: 181 WEEAMKLQHRL 191
            ++A  +Q + 
Sbjct: 232 MKKAAAIQRKF 242

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Length = 292

 Score =  140 bits (354), Expect = 4e-41
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
             +E   ++          I  IAGT   +T   I LTQ+   +G    L + PYY   +
Sbjct: 52  NHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NR 109

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            +++ +Y+HF ++A+++ +P I+YN   V   T  D+  +T+ +LA  +NI G+ + T N
Sbjct: 110 PSQEGLYQHFKAIAEHTDLPQILYN---VPSRTGCDLLPETVGRLAKVKNIIGIXEATGN 166

Query: 122 IKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKW 181
           +   N   +    +F + +G     L  +  G  G I+  + V    + ++  LA  G +
Sbjct: 167 LTRVNQIKELVSDDFVLLSGDDASALDFMQYGGHGVISVTANVAARDMAQMCKLAAEGHF 226

Query: 182 EEAMKLQHRL 191
            EA  +  RL
Sbjct: 227 AEARVINERL 236

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} Length = 297

 Score =  137 bits (348), Expect = 3e-40
 Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 11/190 (5%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           + EE   +I  + +   K +  IAGT   +T   I L+Q A KAGA+  L + PYY   K
Sbjct: 58  SVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY--NK 115

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            +++ IY+HF ++A+ + IP+IIYN   V   T + ++ DT+++LA   NI GVK+ + N
Sbjct: 116 PSQEGIYQHFKTIAEATSIPMIIYN---VPGRTVVSMTNDTILRLAEIPNIVGVKEASGN 172

Query: 122 IKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKW 181
           I             F V +G     L  +L G  G I   +        ++   A  G  
Sbjct: 173 IGSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMCRAALQGDI 232

Query: 182 EEAMKLQHRL 191
             A +L  RL
Sbjct: 233 ALARELNDRL 242

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Length = 297

 Score =  137 bits (347), Expect = 4e-40
 Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           TEEE  ++++ + ++ +  +  IAG    +    +   Q A +AGA+A L +  YY   +
Sbjct: 51  TEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY--NR 108

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            +++ +Y+HF  V D   IP+I+YN   +     +DI  +T+ +LA    I GVKD T +
Sbjct: 109 PSQEGLYQHFKMVHDAIDIPIIVYN---IPPRAVVDIKPETMARLAALPRIVGVKDATTD 165

Query: 122 IKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKW 181
           +   +      +  FS  +G     ++    G  G I+  + +      ++      G +
Sbjct: 166 LARISRERMLINKPFSFLSGDDMTAIAYNASGGQGCISVSANIAPALYGQMQTATLQGDF 225

Query: 182 EEAMKLQHRL 191
            EA+++   L
Sbjct: 226 REALRIHDLL 235

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} PDB: 1xxx_A Length = 304

 Score =  136 bits (345), Expect = 9e-40
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T+ EK++++  + +       +IAG     T  +I L +  A  GA+  L++ PYY   K
Sbjct: 66  TDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY--SK 123

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKDTDNI 122
             +  +  HF +VAD + +P+++Y+   +   + + I  DT+  LA H NI GV D    
Sbjct: 124 PPQRGLQAHFTAVADATELPMLLYD---IPGRSAVPIEPDTIRALASHPNIVGVXDAKA- 179

Query: 123 KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWE 182
            L + A    D   + ++G     L  L +G  G I+ ++ +  G + EL     +G   
Sbjct: 180 DLHSGAQIMADTGLAYYSGDDALNLPWLRMGATGFISVIAHLAAGQLRELLSAFGSGDIA 239

Query: 183 EAMKLQHRLV 192
            A K+   + 
Sbjct: 240 TARKINIAVA 249

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Length = 304

 Score =  136 bits (344), Expect = 1e-39
 Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 11/190 (5%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T  EKL+++  +R+E      +IAG    +TR +++L + AA AGA+  L++ PYY   K
Sbjct: 67  TAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY--SK 124

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKDTDNI 122
            +++ +  HF ++A  + +P+ +Y+   +   + I I  DT+ +L+    I  V D    
Sbjct: 125 PSQEGLLAHFGAIAAATEVPICLYD---IPGRSGIPIESDTMRRLSELPTILAVXDAKG- 180

Query: 123 KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWE 182
            L    +  K+   + ++G     L  L +G +G I+ +       + ELY   + G   
Sbjct: 181 DLVAATSLIKETGLAWYSGDDPLNLVWLALGGSGFISVIGHAAPTALRELYTSFEEGDLV 240

Query: 183 EAMKLQHRLV 192
            A ++  +L 
Sbjct: 241 RAREINAKLS 250

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Length = 291

 Score =  136 bits (344), Expect = 1e-39
 Identities = 59/191 (30%), Positives = 105/191 (54%), Gaps = 13/191 (6%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           + EE  ++I  + +   K I  IAGT   STR  I+LT+ A   GA+AAL++ PYY   K
Sbjct: 52  SMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYY--NK 109

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            T++ +Y+H+ ++A+   +P+I+YN   V   T +D+S DT V+LA   NI G+KD T +
Sbjct: 110 PTQEGLYQHYKAIAEAVELPLILYN---VPGRTGVDLSNDTAVRLAEIPNIVGIKDATGD 166

Query: 122 I-KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           + +   + +       +V++G        +L+G  G I+  + +    + E+  +A A  
Sbjct: 167 VPRGKALIDALNG-KMAVYSGDDETAWELMLLGADGNISVTANIAPKAMSEVCAVAIAKD 225

Query: 181 WEEAMKLQHRL 191
            ++A  L +++
Sbjct: 226 EQQAKTLNNKI 236

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Length = 314

 Score =  136 bits (345), Expect = 1e-39
 Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 13/191 (6%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
             EE +++I  +  + K  I  IAGT   STR  + LT+ A   GA+A L++ PYY   K
Sbjct: 74  DVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYY--NK 131

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            T++ +Y+HF  +A+   IP I+YN   V   T+ D+  +T+ +L+   NI G+K+ T +
Sbjct: 132 PTQEGMYQHFRHIAEAVAIPQILYN---VPGRTSCDMLPETVERLSKVPNIIGIKEATGD 188

Query: 122 IK-LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           ++    +  +    +F V++G     +  +L+G  G I+  + V    + +L   A  G 
Sbjct: 189 LQRAKEVIERVGK-DFLVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGD 247

Query: 181 WEEAMKLQHRL 191
              A  +  RL
Sbjct: 248 AAAARAINDRL 258

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Length = 289

 Score =  135 bits (342), Expect = 2e-39
 Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 14/191 (7%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           + EE  K+I  +       +  IAG     T   I+L+  A   GA+A L + PYY   K
Sbjct: 51  SHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY--NK 108

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAH-HENIRGVKD-TD 120
            T++ + +HF  VA++  +P+++YN   V   T +++   T+  LA  + NI  VK+   
Sbjct: 109 PTQEGLRKHFGKVAESINLPIVLYN---VPSRTAVNLEPKTVKLLAEEYSNISAVKEANP 165

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           N  L+ ++    D   +V +G+    L  + +G  G I+ ++ ++     E+ + A  G 
Sbjct: 166 N--LSQVSELIHDAKITVLSGNDELTLPIIALGGKGVISVVANIVPKEFVEMVNYALEGD 223

Query: 181 WEEAMKLQHRL 191
           +E+A ++ ++L
Sbjct: 224 FEKAREIHYKL 234

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Length = 291

 Score =  134 bits (340), Expect = 3e-39
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 11/191 (5%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           TE E+ + I  +  +  K I  IAGT   +T A+I +++ A   G +  L++ PYY   K
Sbjct: 52  TETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY--NK 109

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            T+  + +HF +V+D    P+IIYN   V   T ++I+  TL +L   +NI  V + + N
Sbjct: 110 TTQKGLVKHFKAVSDAVSTPIIIYN---VPGRTGLNITPGTLKELCEDKNIVAVXEASGN 166

Query: 122 IKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKW 181
           I               +++G+   ++  L +G  G I+ L+ V+   +  + +L   GK 
Sbjct: 167 ISQIAQIKALCGDKLDIYSGNDDQIIPILALGGIGVISVLANVIPEDVHNMCELYLNGKV 226

Query: 182 EEAMKLQHRLV 192
            EA+K+Q   +
Sbjct: 227 NEALKIQLDSL 237

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Length = 294

 Score =  134 bits (341), Expect = 3e-39
 Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 12/191 (6%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE  K+I    +     I  IAGT   +T   + LT  A + GA+ AL++ PYY   K
Sbjct: 51  TFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY--NK 108

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLA-HHENIRGVKD-TD 120
            T+  +YEHF +VA    IP+IIYN   +   T ++ISVDT+ KLA   ENI   K+ T 
Sbjct: 109 PTQRGLYEHFKTVAQEVDIPIIIYN---IPSRTCVEISVDTMFKLASECENIVASKESTP 165

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           N+   +   +    +FSV +G     L  + +G  G I+  + V+   + EL   A  G 
Sbjct: 166 NMDRISEIVKRLGESFSVLSGDDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGD 225

Query: 181 WEEAMKLQHRL 191
           +  A ++ + L
Sbjct: 226 FRRAREIHYYL 236

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} Length = 283

 Score =  133 bits (337), Expect = 9e-39
 Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 15/189 (7%)

Query: 8   TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           T EE+ + +  LR   +K  + G   E+         +A  AGA A L   P Y+   + 
Sbjct: 48  TPEERARGLRALRP--RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLG 105

Query: 68  EDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDNI- 122
             L   ++ ++A+   +P+ +Y+   V   T +D+ ++ +  LA H N+ G+KD + ++ 
Sbjct: 106 AGL-LRYYEALAEK--MPLFLYH---VPQNTKVDLPLEAVEALAPHPNVLGIKDSSGDLS 159

Query: 123 KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWE 182
           ++A    + ++  F V+ G A   L  L +G  GGI A + +       L D  + G+  
Sbjct: 160 RIAFYQARLQE--FRVYTGHAPTFLGALALGAEGGILAAANLAPRAYRALLDHFREGRLA 217

Query: 183 EAMKLQHRL 191
           EA +LQ +L
Sbjct: 218 EAQELQKKL 226

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} Length = 316

 Score =  134 bits (339), Expect = 9e-39
 Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 15/192 (7%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQK 64
           + EE  + +    +        +AG  Y  +T   I+L   A  AGA+A +I  P +   
Sbjct: 63  SLEEAKEEVRRTVEYVHGRALVVAGIGY--ATSTAIELGNAAKAAGADAVMIHMPIH--P 118

Query: 65  KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIK 123
            +T   +Y +F  + +    P ++Y      + +IS   LV LA  +N+ GVK   +++ 
Sbjct: 119 YVTAGGVYAYFRDIIEALDFPSLVYF----KDPEISDRVLVDLAPLQNLVGVKYAINDLP 174

Query: 124 LAN--MANQTKDLNFSVFAGSAGYLLSGLL-VGCAGGINALSAVLGGPICELYDLAKAGK 180
                + +  ++   +   G+A          G  G  + L  +L     E+ +  +   
Sbjct: 175 RFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAGAKGFTSGLVNLLPQKAVEMLEALRNND 234

Query: 181 WEEAMKLQHRLV 192
            +   ++   +V
Sbjct: 235 NDAVWRIWEDIV 246

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Length = 303

 Score =  134 bits (338), Expect = 1e-38
 Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 15/194 (7%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           +  E+ +++  + +E K    +IA   C ST  +  L   A + G +A   + P+Y    
Sbjct: 62  SLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY--YP 119

Query: 66  MTEDLIYEHFISVADN-SPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKDT-- 119
            + +   +H+ ++ D+   +P+++YN   +   + + +++D +  L     +  +  T  
Sbjct: 120 FSFEEHCDHYRAIIDSADGLPMVVYN---IPALSGVKLTLDQINTLVTLPGVGALXQTSG 176

Query: 120 DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAG 179
           D  ++  +  +  D    ++ G      SGLL G  GGI +   ++G     +    K G
Sbjct: 177 DLYQMEQIRREHPD--LVLYNGYDNIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEG 234

Query: 180 KWEEAMKLQHRLVK 193
             + A KLQ    K
Sbjct: 235 DIQTAQKLQTECNK 248

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Length = 292

 Score =  132 bits (334), Expect = 3e-38
 Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 12/191 (6%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           ++ E  +++    +     +  IAG    ST   I   + A  AGA+  LI+ PYY   K
Sbjct: 51  SKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY--NK 108

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLA-HHENIRGVKD-TD 120
            T++ IY+HF ++   S IP+I+YN   +   + I+I V+TL ++     N++GV D T 
Sbjct: 109 PTQEGIYQHFKAIDAASTIPIIVYN---IPGRSAIEIHVETLARIFEDCPNVKGVXDATG 165

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           N+   ++       +F++  G  G  L  +  G  G I+  + V      +       G 
Sbjct: 166 NLLRPSLERMACGEDFNLLTGEDGTALGYMAHGGHGCISVTANVAPALCADFQQACLNGD 225

Query: 181 WEEAMKLQHRL 191
           +  A+KLQ RL
Sbjct: 226 FAAALKLQDRL 236

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Length = 315

 Score =  132 bits (334), Expect = 6e-38
 Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE  +II    ++  K +  +AG    ST   ++L + A KAGA+A L++ PYY   +
Sbjct: 73  THEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY--NR 130

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLA-HHENIRGVKD-TD 120
             +  +Y HF S+A    IP+IIYN   +   + ID++V+T+  L    +NI GVKD T 
Sbjct: 131 PNQRGLYTHFSSIAKAISIPIIIYN---IPSRSVIDMAVETMRDLCRDFKNIIGVKDATG 187

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
            I+ A+   +    +F   +G     L     G  G I+  S V      +L+       
Sbjct: 188 KIERASEQREKCGKDFVQLSGDDCTALGFNAHGGVGCISVSSNVAPKLCAQLHAACLCSD 247

Query: 181 WEEAMKLQHRL 191
           ++ A+KL   L
Sbjct: 248 YKTALKLNDLL 258

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A Length = 292

 Score =  131 bits (332), Expect = 7e-38
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T +EK  I+ T+     K +  IAGT    T  +I  + +A   GA+A +++ PYY   K
Sbjct: 53  TTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY--NK 110

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
             +  + +HF ++AD   +PV++YN   V   TN+ I  +T+  L+ H  I  +KD T++
Sbjct: 111 TNQRGLVKHFEAIADAVKLPVVLYN---VPSRTNMTIEPETVEILSQHPYIVALKDATND 167

Query: 122 I-KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
              L  +  +    +F++++G+   ++     G  G I+ ++ V+      LYD  ++G 
Sbjct: 168 FEYLEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSGL 227

Query: 181 WEEAMKLQHRL 191
             +       +
Sbjct: 228 --DIQDQFKPI 236

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} Length = 314

 Score =  131 bits (332), Expect = 1e-37
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 17/193 (8%)

Query: 8   TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           T EE  ++ + + +      T++AG    S    I+L + A  +GA+  +I  P +    
Sbjct: 63  TIEEAKQVATRVTELVNGRATVVAGI-GYSVDTAIELGKSAIDSGADCVMIHQPVH--PY 119

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFVTNID--ISVDTLVKLAHHENIRGVKD-TDNI 122
           +T+    E++ ++ +    P IIY        D  +S D + +LA  + + G+K   ++I
Sbjct: 120 ITDAGAVEYYRNIIEALDAPSIIY------FKDAHLSDDVIKELAPLDKLVGIKYAINDI 173

Query: 123 KLAN--MANQTKDLNFSVFAGSAGYLLSGLL-VGCAGGINALSAVLGGPICELYDLAKAG 179
           +     M    K  N +   G+A          G  G  + L  V       L +  + G
Sbjct: 174 QRVTQVMRAVPKSSNVAFICGTAEKWAPFFYHAGAVGFTSGLVNVFPQKSFALLEALEEG 233

Query: 180 KWEEAMKLQHRLV 192
             E+   +   +V
Sbjct: 234 NQEKIWDVWEDVV 246

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Length = 301

 Score =  130 bits (329), Expect = 2e-37
 Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 8   TEEEKLKIISTLRQETKKT---IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK 64
           T EE    I    +  K T   ++AG    +T   + L + A + GA+  L + PYY   
Sbjct: 58  THEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYY--N 115

Query: 65  KMTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLA-HHENIRGVKD-T 119
           K T+  +YEH+ ++A +  IPV++YN   V   T  +IS DT++KL    ENI GVK+ +
Sbjct: 116 KPTQQGLYEHYKAIAQSVDIPVLLYN---VPGRTGCEISTDTIIKLFRDCENIYGVKEAS 172

Query: 120 DNI-KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKA 178
            NI K  ++          + +G        L  G  G I+  S +L   I  L   A  
Sbjct: 173 GNIDKCVDLLAHEPR--MMLISGEDAINYPILSNGGKGVISVTSNLLPDMISALTHFALD 230

Query: 179 GKWEEAMKLQHRL 191
             ++EA K+   L
Sbjct: 231 ENYKEAKKINDEL 243

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Length = 313

 Score =  130 bits (329), Expect = 2e-37
 Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 14/198 (7%)

Query: 4   SFKSTEEEKLKIISTLRQETKK-TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF 62
           + K    E   + +   +  K   +I G       A   L + +  AGA   +I  P   
Sbjct: 55  APKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPS- 113

Query: 63  QKKMTEDLIYEHFISVAD--NSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVK-- 117
               T++ I  +F    +     +P ++ +     ++ ++   + ++     +   +K  
Sbjct: 114 --LRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHE 171

Query: 118 DTDNI----KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELY 173
           D   +     L            S+  G+ G  L   +                 + ++ 
Sbjct: 172 DWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEMER-GADGAMTGYCFPDMLVDVV 230

Query: 174 DLAKAGKWEEAMKLQHRL 191
            L+KAG+ + A  L    
Sbjct: 231 KLSKAGQRDLAHNLFDAH 248

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Length = 306

 Score =  128 bits (324), Expect = 1e-36
 Identities = 48/195 (24%), Positives = 95/195 (48%), Gaps = 15/195 (7%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
            E+E+ K++S   +     I  I G    ST  T+ L ++A K GAN  L++ PYY   K
Sbjct: 63  NEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NK 120

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKL-AHHENIRGVKDT-- 119
            T++ +Y+H+  +++ + + +++YN   V   T +++  +T  ++ A  +N+ G+ +   
Sbjct: 121 PTQEGLYQHYKYISERTDLGIVVYN---VPGRTGVNVLPETAARIAADLKNVVGIXEANP 177

Query: 120 --DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAK 177
             D I       +    +F V++G+       L  G  G I+ +S V    + EL     
Sbjct: 178 DIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYF 237

Query: 178 AGKWEEAMKLQHRLV 192
           +G  E++ ++  +L 
Sbjct: 238 SGNLEKSREVHRKLR 252

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Length = 309

 Score =  124 bits (312), Expect = 7e-35
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 7/195 (3%)

Query: 4   SFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
            F  T++E+  +  T+ +       +I  T   ST+     + +A + GA   + + PY+
Sbjct: 55  QFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYH 114

Query: 62  FQKKM-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV--KD 118
                  E  I+E +  V+D   IP+++ +         +          E +     + 
Sbjct: 115 GATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREIEQVAYFXIET 174

Query: 119 TDNI-KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAK 177
                KL  +     D     + G     L   L                 I  + +  +
Sbjct: 175 PGAANKLRELIRLGGDAIEGPWDGEEAITLLADLHA-GATGAMTGGGFPDGIRPILEAWR 233

Query: 178 AGKWEEAMKLQHRLV 192
            G+ ++A       +
Sbjct: 234 EGRHDDAYARYQAWL 248

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* Length = 360

 Score =  121 bits (306), Expect = 1e-33
 Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 24/191 (12%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
           + +E + +I         +I  I  T   STR  I  T++    G +AAL + PYY   K
Sbjct: 110 SWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY--GK 167

Query: 66  MTEDLIYEHFISVADNSPIPVIIYNNTFV---TNIDISVDTLVKLAHHENIRGVKD-TDN 121
            + + +  HF SV    P   IIYN   V   T  DI    + KL+ + N+ GVK+   N
Sbjct: 168 TSIEGLIAHFQSVLHMGPT--IIYN---VPGRTGQDIPPRAIFKLSQNPNLAGVKECVGN 222

Query: 122 IKLANMANQTKDLNFSVFAGS-AGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
            ++             V++G+      S    G  G I+  S ++ G + +L    +   
Sbjct: 223 KRVEEYTEN----GVVVWSGNDDECHDSRWDYGATGVISVTSNLVPGLMRKLMFEGRNS- 277

Query: 181 WEEAMKLQHRL 191
                 L  +L
Sbjct: 278 -----SLNSKL 283

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Length = 294

 Score =  118 bits (297), Expect = 8e-33
 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 12/187 (6%)

Query: 8   TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK 65
              E+  I+S+           + G   +S     D + +A  AGA   L+  P YF K 
Sbjct: 54  GSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYF-KN 112

Query: 66  MTEDLIYEHFISVAD---NSPIPVIIYNNTFVTNIDISVDTLVKLA--HHENIRGVKD-T 119
           +++D ++  F +V          +++YN   VT + +SV+ + +L       + GVKD +
Sbjct: 113 VSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSS 172

Query: 120 DNI-KLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKA 178
            N      +  +  D   ++  G    L  G+ +G  G I+ ++  L   +  +    K 
Sbjct: 173 GNWSHTERLLKEHGD--LAILIGDERDLARGVRLGGQGAISGVANFLTQEVRAMAVDGKD 230

Query: 179 GKWEEAM 185
                 +
Sbjct: 231 DPRIVDL 237

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Length = 344

 Score =  109 bits (275), Expect = 3e-29
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 10/199 (5%)

Query: 8   TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT 67
           T+E++++ +  L  +    +I GT   +T + +     A K GA   +++      +   
Sbjct: 77  TDEQRMEGVERLV-KAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVL-SRGSV 134

Query: 68  EDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD---TDNIK 123
                 HF ++   +P IP +IYN+ +      +       A H+N+ G K+     +++
Sbjct: 135 IAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAEHKNLVGFKEFGGPADMR 194

Query: 124 LANMANQTKDLNFSVFAGSAGYLLSGLL-VGCAGGINALSAV---LGGPICELYDLAKAG 179
            A     ++D   ++  G    ++ G +  G  G I  +  V       +C+L   A  G
Sbjct: 195 YAAENITSRDDEVTLMIGVDTAVVHGFVNCGATGAITGIGNVLPKEVIHLCKLSQAAAKG 254

Query: 180 KWEEAMKLQHRLVKPDVTL 198
             +   +         V  
Sbjct: 255 DADARARALELEQALAVLS 273

>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti} Length = 396

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 13/94 (13%)

Query: 37  RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN--NTFV 94
            A     +     G    L+            +     +  V      PVII+     F 
Sbjct: 137 AAYESQIEAIEAEGGRIILMASRALAAAAKGPEDYIRVYDRVLSQVKEPVIIHWLGEMFD 196

Query: 95  ---------TNIDISVDTLVKL--AHHENIRGVK 117
                     +   ++ T + +  AH   + G+K
Sbjct: 197 PALEGYWGNADHMAAMKTCLDVLEAHAAKVDGIK 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	100.0
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	100.0
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	100.0
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	100.0
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	100.0
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	100.0
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	100.0
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	100.0
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	100.0
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	100.0
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	100.0
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	100.0
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	100.0
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	100.0
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	100.0
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	100.0
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	100.0
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	100.0
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	100.0
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	100.0
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	100.0
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	100.0
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	100.0
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	100.0
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	100.0
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	100.0
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	100.0
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	100.0
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	100.0
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	100.0
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	100.0
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	100.0
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	100.0
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	100.0
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	100.0
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	100.0
4dnh_A	396	Uncharacterized protein; structural genomics, PSI-	99.29
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	97.63
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	97.52
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.45
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	97.02
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	96.94
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.8
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.78
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	96.77
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	96.67
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	96.6
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	96.59
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	96.51
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	96.51
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	96.49
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	96.44
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	96.43
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	96.4
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	96.39
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	96.37
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	96.36
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	96.34
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	96.32
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	96.27
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	96.27
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	96.27
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	96.19
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	96.18
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	96.11
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	96.1
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	95.98
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	95.94
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	95.86
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	95.82
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	95.79
3eol_A	433	Isocitrate lyase; seattle structural center for in	95.73
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	95.73
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	95.73
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	95.72
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	95.68
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	95.63
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	95.54
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	95.53
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	95.52
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	95.41
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	95.41
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.38
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	95.34
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	95.27
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	95.24
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	95.2
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	95.19
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	95.18
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	95.15
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	95.14
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	95.12
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	95.1
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	95.09
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	94.95
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	94.93
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	94.81
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	94.79
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	94.76
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	94.74
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	94.74
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	94.73
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	94.7
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	94.61
3cyv_A	354	URO-D, UPD, uroporphyrinogen decarboxylase; alpha/	94.41
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	94.4
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	94.34
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	94.31
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	94.29
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	94.26
4exq_A	368	UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid	94.25
2qgy_A	391	Enolase from the environmental genome shotgun sequ	94.23
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	94.21
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	94.21
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	94.2
1r3s_A	367	URO-D, uroporphyrinogen decarboxylase, UPD; uropor	94.19
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.16
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.11
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	94.1
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	94.06
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	94.06
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	94.06
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	94.02
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	93.95
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	93.95
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	93.94
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	93.91
3ble_A	337	Citramalate synthase from leptospira interrogans;	93.91
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	93.89
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	93.86
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	93.76
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	93.75
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	93.75
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	93.73
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	93.71
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	93.69
2eja_A	338	URO-D, UPD, uroporphyrinogen decarboxylase; dimer,	93.58
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	93.55
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	93.52
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	93.5
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	93.49
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	93.47
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	93.46
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	93.38
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	93.31
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.2
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	93.17
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	93.16
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	93.09
2o56_A	407	Putative mandelate racemase; dehydratase, structur	93.09
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	93.0
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	92.96
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	92.96
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	92.92
2poz_A	392	Putative dehydratase; octamer, structural genomics	92.92
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	92.89
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	92.84
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	92.66
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	92.65
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	92.62
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	92.61
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	92.61
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	92.55
2gl5_A	410	Putative dehydratase protein; structural genomics,	92.5
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	92.47
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	92.4
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	92.39
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	92.36
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	92.3
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	92.28
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	92.27
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	92.25
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	92.13
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	92.1
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	92.08
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	92.06
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	91.95
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	91.92
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	91.91
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	91.89
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	91.84
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	91.83
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	91.81
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	91.8
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	91.78
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	91.77
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	91.76
1viz_A	240	PCRB protein homolog; structural genomics, unknown	91.76
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	91.73
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	91.61
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	91.6
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	91.56
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	91.53
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	91.52
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	91.51
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	91.5
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	91.48
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	91.46
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	91.45
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	91.43
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	91.43
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	91.39
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	91.27
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	91.04
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	91.01
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	91.0
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	90.92
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	90.91
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	90.9
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	90.88
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	90.87
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	90.68
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	90.67
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	90.66
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	90.64
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	90.63
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	90.54
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	90.5
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	90.5
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	90.31
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	90.26
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	90.2
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	90.17
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	90.07
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	89.99
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	89.96
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	89.86
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	89.82
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	89.78
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	89.75
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	89.73
1bwv_A	493	Rubisco, protein (ribulose bisphosphate carboxylas	89.66
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	89.66
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	89.65
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	89.57
2inf_A	359	URO-D, UPD, uroporphyrinogen decarboxylase; (alpha	89.51
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	89.5
1j93_A	353	UROD, uroporphyrinogen decarboxylase; beta barrel,	89.43
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	89.41
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	89.39
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	89.2
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	89.18
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	89.12
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	89.01
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	88.99
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	88.98
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	88.97
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	88.95
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	88.92
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	88.69
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	88.59
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	88.5
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	88.48
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	88.4
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	88.39
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	88.37
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	88.37
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	88.12
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	88.09
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	88.09
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	88.08
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	88.07
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	88.06
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	88.05
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	88.04
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	87.88
3irs_A	291	Uncharacterized protein BB4693; structural genomic	87.74
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	87.73
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	87.7
2q02_A	272	Putative cytoplasmic protein; structural genomics,	87.69
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	87.67
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	87.61
3tqk_A	346	Phospho-2-dehydro-3-deoxyheptonate aldolase; trans	87.6
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	87.58
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	87.4
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	87.33
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	87.32
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	87.31
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	87.2
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	87.17
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	87.14
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	87.11
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	87.09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	87.0
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	86.97
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	86.9
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	86.85
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	86.85
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	86.79
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	86.77
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	86.69
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	86.69
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	86.66
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	86.61
3o74_A	272	Fructose transport system repressor FRUR; dual tra	86.57
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	86.55
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	86.49
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	86.47
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	86.43
3kke_A	303	LACI family transcriptional regulator; structural	86.28
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	86.26
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	86.25
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	86.23
2d69_A	430	Ribulose bisphosphate carboxylase; alpha/beta barr	86.15
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	86.07
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	86.05
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	86.04
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	85.97
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	85.96
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	85.95
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	85.94
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	85.93
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	85.79
3kdn_A	444	Rubisco, ribulose bisphosphate carboxylase; ribulo	85.79
3egc_A	291	Putative ribose operon repressor; structural genom	85.74
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	85.71
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	85.56
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	85.55
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	85.49
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	85.48
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	85.47
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	85.47
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	85.45
3fcp_A	381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	85.41
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	85.3
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	85.3
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	85.25
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	85.1
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	85.09
4dye_A	398	Isomerase; enolase family protein, EFI, enzym func	85.07
4ay7_A	348	Methylcobalamin\: coenzyme M methyltransferase; TI	84.97
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	84.96
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	84.85
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	84.7
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	84.66
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	84.64
3e61_A	277	Putative transcriptional repressor of ribose OPER;	84.64
4f0h_A	493	Ribulose bisphosphate carboxylase large chain; alp	84.61
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	84.56
3nwr_A	432	A rubisco-like protein; lyase; HET: KCX; 1.50A {Bu	84.54
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	84.36
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	84.35
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	84.35
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	84.32
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	84.3
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	84.3
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	84.15
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	84.03
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	84.0
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	83.88
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	83.82
3oa3_A	288	Aldolase; structural genomics, seattle structural	83.78
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	83.77
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	83.75
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	83.74
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	83.73
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	83.65
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	83.59
3k4h_A	292	Putative transcriptional regulator; structural gen	83.54
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	83.52
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	83.52
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	83.5
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	83.45
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	83.44
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	83.28
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	83.18
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	83.16
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	83.16
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	83.0
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	82.96
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	82.84
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	82.73
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	82.66
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	82.55
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	82.37
3qfw_A	378	Ribulose-1,5-bisphosphate carboxylase/oxygenase L	82.34
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	82.3
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	82.03
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	82.03
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	81.84
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	81.83
1wdd_A	477	Ribulose bisphosphate carboxylase large chain; rub	81.78
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	81.73
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	81.73
2rjo_A	332	Twin-arginine translocation pathway signal protei;	81.71
2dvt_A	327	Thermophilic reversible gamma-resorcylate decarbo;	81.67
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	81.65
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	81.6
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	81.59
3d02_A	303	Putative LACI-type transcriptional regulator; peri	81.59
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	81.59
1lt8_A	406	Betaine-homocysteine methyltransferase; homocystei	81.54
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	81.53
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	81.52
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	81.46
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	81.39
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	81.06
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	81.02
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	80.83
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	80.71
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	80.51
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	80.15

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=100.00  E-value=8.7e-55  Score=360.24  Aligned_cols=194  Identities=30%  Similarity=0.408  Sum_probs=187.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        52 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va  129 (297)
T 3flu_A           52 GESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPS--QEGIYQHFKTIA  129 (297)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |+.++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus       130 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~G~~G~  208 (297)
T 3flu_A          130 EATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELIN-RAPEGFVVLSGDDHTALPFMLCGGHGV  208 (297)
T ss_dssp             HHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH-HSCTTCEEEECCGGGHHHHHHTTCCEE
T ss_pred             HhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEECcHHHHHHHHhCCCCEE
Confidence            9999999999999999999999999999999999999999  9999988884 567899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       209 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l  249 (297)
T 3flu_A          209 ITVAANAAPKLFADMCRAALQGDIALARELNDRLIPIYDTM  249 (297)
T ss_dssp             EESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTT
T ss_pred             EechHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=100.00  E-value=1.1e-54  Score=361.76  Aligned_cols=194  Identities=28%  Similarity=0.443  Sum_probs=187.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        68 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  145 (314)
T 3qze_A           68 GESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPT--QEGMYQHFRHIA  145 (314)
T ss_dssp             GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |+.++.++++ ..+++|.||+|.|.++++.+..|++|+
T Consensus       146 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~Ga~G~  224 (314)
T 3qze_A          146 EAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIE-RVGKDFLVYSGDDATAVELMLLGGKGN  224 (314)
T ss_dssp             HHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHH-HSCTTSEEEESCGGGHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEcCCCCHHHHHHHHH-HcCCCeEEEecChHHHHHHHHCCCCEE
Confidence            9999999999999999999999999999999999999999  9999998884 567899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       225 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l  265 (314)
T 3qze_A          225 ISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHKAL  265 (314)
T ss_dssp             EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988643

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=1.2e-54  Score=358.96  Aligned_cols=194  Identities=32%  Similarity=0.443  Sum_probs=186.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  122 (294)
T 2ehh_A           45 GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPT--QRGLYEHFKTVA  122 (294)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++||++||+|.+||++++++++.+|+ ++|||+|||++  |..++.++++ ..+++|.||+|+|.++++++..|++|
T Consensus       123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G  201 (294)
T 2ehh_A          123 QEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVK-RLGESFSVLSGDDSLTLPMMALGAKG  201 (294)
T ss_dssp             HHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHH-HHCTTSEEEESSGGGHHHHHHTTCCE
T ss_pred             HhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEECcHHHHHHHHHCCCCE
Confidence            99999999999999999999999999999 89999999999  9999988874 34679999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       202 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  243 (294)
T 2ehh_A          202 VISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDLFKVL  243 (294)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987653

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=100.00  E-value=8.2e-55  Score=359.50  Aligned_cols=194  Identities=29%  Similarity=0.454  Sum_probs=187.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|+
T Consensus        46 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~ia  123 (291)
T 3tak_A           46 GEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPT--QEGLYQHYKAIA  123 (291)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|++||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.+|+|.|.++++.+..|++|+
T Consensus       124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ssgd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~  202 (291)
T 3tak_A          124 EAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALID-ALNGKMAVYSGDDETAWELMLLGADGN  202 (291)
T ss_dssp             HHCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH-HHTTSSEEEECCHHHHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEecccccCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEECcHHHHHHHHHCCCCEE
Confidence            9999999999999999999999999999999999999999  9999988874 456899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       203 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l  243 (291)
T 3tak_A          203 ISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIANLHNIL  243 (291)
T ss_dssp             EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHT
T ss_pred             EechhhhcHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988653

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=100.00  E-value=1.3e-54  Score=359.78  Aligned_cols=193  Identities=33%  Similarity=0.567  Sum_probs=186.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        57 GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  134 (301)
T 1xky_A           57 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPS--QEGMYQHFKAIA  134 (301)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.||+|+|.++++++..|++|+
T Consensus       135 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~G~~G~  213 (301)
T 1xky_A          135 ESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIE-KTADDFAVYSGDDGLTLPAMAVGAKGI  213 (301)
T ss_dssp             HTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSSCHHHHHHHHH-HSCTTCEEEESSGGGHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-hcCCCeEEEECcHHHHHHHHHcCCCEE
Confidence            9999999999999999999999999999999999999999  9999998884 456799999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.+++++
T Consensus       214 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  253 (301)
T 1xky_A          214 VSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDS  253 (301)
T ss_dssp             EESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             EcCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=100.00  E-value=7.9e-55  Score=360.40  Aligned_cols=193  Identities=25%  Similarity=0.373  Sum_probs=186.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  122 (297)
T 2rfg_A           45 GESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPS--QEGLYQHFKMVH  122 (297)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus       123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds~gd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~G~~G~  201 (297)
T 2rfg_A          123 DAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDATTDLARISRERM-LINKPFSFLSGDDMTAIAYNASGGQGC  201 (297)
T ss_dssp             HHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCTTHHHHHHT-TCCSCCEEEESCGGGHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHCCCCEE
Confidence            9999999999999999999999999999999999999999  8999988884 456799999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       202 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  241 (297)
T 2rfg_A          202 ISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLHEA  241 (297)
T ss_dssp             EESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             EecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=100.00  E-value=1e-54  Score=362.04  Aligned_cols=194  Identities=29%  Similarity=0.404  Sum_probs=187.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        67 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va  144 (315)
T 3si9_A           67 GESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPN--QRGLYTHFSSIA  144 (315)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++||++||+|.+||++++++++.+|++ +|||+|||++  |+.++.++++ ..+++|.||+|+|.++++.+..|++|
T Consensus       145 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~l~~-~~~~~f~v~~G~d~~~l~~l~~G~~G  223 (315)
T 3si9_A          145 KAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDATGKIERASEQRE-KCGKDFVQLSGDDCTALGFNAHGGVG  223 (315)
T ss_dssp             HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHHHHHH-HHCSSSEEEESCGGGHHHHHHTTCCE
T ss_pred             HcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEecCHHHHHHHHHcCCCE
Confidence            999999999999999999999999999997 9999999999  9999988884 45789999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       224 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l  265 (315)
T 3si9_A          224 CISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMPLNRAV  265 (315)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=100.00  E-value=8.8e-55  Score=359.48  Aligned_cols=194  Identities=24%  Similarity=0.400  Sum_probs=186.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|+
T Consensus        46 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia  123 (292)
T 2ojp_A           46 GESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPS--QEGLYQHFKAIA  123 (292)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.||+|+|.++++.+..|++|+
T Consensus       124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~  202 (292)
T 2ojp_A          124 EHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKE-LVSDDFVLLSGDDASALDFMQYGGHGV  202 (292)
T ss_dssp             TTCSSCEEEECCHHHHSCCCCHHHHHHHHTSTTEEEC-CCSCCTHHHHHHHT-TSCTTSBCEESCGGGHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEeCcchhccCCCHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHCCCcEE
Confidence            9999999999999999999999999999999999999999  9999998884 456799999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       203 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  243 (292)
T 2ojp_A          203 ISVTANVAARDMAQMCKLAAEGHFAEARVINERLMPLHNKL  243 (292)
T ss_dssp             EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988653

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=100.00  E-value=7.3e-55  Score=361.06  Aligned_cols=193  Identities=25%  Similarity=0.401  Sum_probs=186.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        49 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va  126 (300)
T 3eb2_A           49 GEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLK--DAQIESYFRAIA  126 (300)
T ss_dssp             GTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCC--HHHHHHHHHHHH
T ss_pred             cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.||+|.|.++++.+..|++|+
T Consensus       127 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~  205 (300)
T 3eb2_A          127 DAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTNTGRLLSIIN-RCGDALQVFSASAHIPAAVMLIGGVGW  205 (300)
T ss_dssp             HHCSSCEEEEECTTTCSSCCCHHHHHHHHTSTTEEEEEECSSBHHHHHHHHH-HHGGGSEEEECTTSCHHHHHHTTCCEE
T ss_pred             HHCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-HcCCCeEEEeCcHHHHHHHHhCCCCEE
Confidence            9999999999999999999999999999999999999999  8999988874 456789999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       206 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  245 (300)
T 3eb2_A          206 MAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWRVNEA  245 (300)
T ss_dssp             EEGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHH
T ss_pred             EeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998765

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=100.00  E-value=7.6e-55  Score=359.72  Aligned_cols=194  Identities=26%  Similarity=0.403  Sum_probs=185.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|+
T Consensus        46 GE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia  123 (291)
T 3a5f_A           46 GEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTT--QKGLVKHFKAVS  123 (291)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHC-CTG
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ ..+++|.||+|+|.++++.+..|++|+
T Consensus       124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~  202 (291)
T 3a5f_A          124 DAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEASGNISQIAQIKA-LCGDKLDIYSGNDDQIIPILALGGIGV  202 (291)
T ss_dssp             GGCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH-HHGGGSEEEESCGGGHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCCCeEEEeCcHHHHHHHHHCCCCEE
Confidence            9999999999999999999999999999999999999999  9999988874 345789999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       203 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  243 (291)
T 3a5f_A          203 ISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALTNAL  243 (291)
T ss_dssp             EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHT
T ss_pred             EecHHHhcHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988653

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.2e-54  Score=356.16  Aligned_cols=194  Identities=27%  Similarity=0.432  Sum_probs=186.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|+
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia  122 (292)
T 2vc6_A           45 GESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPT--QEGIYQHFKAID  122 (292)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++||++||+|.+||++++++++.+|++ +|||+|+|++  |..++.++++ ..+++|.||+|+|.++++.+..|++|
T Consensus       123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G  201 (292)
T 2vc6_A          123 AASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPSLERM-ACGEDFNLLTGEDGTALGYMAHGGHG  201 (292)
T ss_dssp             HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHHHHHH-HSCTTSEEEESCGGGHHHHHHTTCCE
T ss_pred             HhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCCCCHHHHHHHHH-HcCCCEEEEECchHHHHHHHHcCCCE
Confidence            999999999999999999999999999998 9999999999  8999988874 45679999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       202 ~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  243 (292)
T 2vc6_A          202 CISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPLHRAL  243 (292)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988653

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=100.00  E-value=2.2e-54  Score=357.28  Aligned_cols=192  Identities=22%  Similarity=0.348  Sum_probs=185.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|+
T Consensus        49 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va  126 (293)
T 1f6k_A           49 GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTII  126 (293)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ . .++|.||+|.|.++++.+..|++|+
T Consensus       127 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~gd~~~~~~~~~-~-~~~f~v~~G~d~~~~~~l~~G~~G~  204 (293)
T 1f6k_A          127 AETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKK-A-YPNHLIWAGFDEMMLPAASLGVDGA  204 (293)
T ss_dssp             HHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHH-H-CTTSEEEECCGGGHHHHHHTTCSEE
T ss_pred             HhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHH-h-CCCeEEEECcHHHHHHHHHCCCcEE
Confidence            9999999999999999999999999999999999999999  8999988874 3 4689999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       205 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  244 (293)
T 1f6k_A          205 IGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLIEG  244 (293)
T ss_dssp             EESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=100.00  E-value=5.7e-54  Score=356.74  Aligned_cols=194  Identities=39%  Similarity=0.728  Sum_probs=185.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC--CCCCHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ--KKMTEDLIYEHFIS   77 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~--~~~~~~~i~~y~~~   77 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||+|++  ++  ++++++||++
T Consensus        59 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s--~~~l~~~f~~  136 (307)
T 3s5o_A           59 GEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMS--SAALIHHYTK  136 (307)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCC--HHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCC--HHHHHHHHHH
Confidence            8999999999999999999998  9999999999999999999999999999999999999997  56  9999999999


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCC
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCA  155 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~  155 (198)
                      |++++++||++||+|.+||++++++++.+|+++|||+|||++  |+.++.++++...+++|.||+|+|.++++++..|++
T Consensus       137 ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~~  216 (307)
T 3s5o_A          137 VADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGSAGFLMASYALGAV  216 (307)
T ss_dssp             HHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHHHTTTSSCEEEESSGGGHHHHHHHTCC
T ss_pred             HHhhcCCCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999  999998887533357899999999999999999999


Q ss_pred             eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         156 GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       156 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      |+||+++|++|+.++++|+++++||+++|+++|+++.++..+
T Consensus       217 G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~~~~~  258 (307)
T 3s5o_A          217 GGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAA  258 (307)
T ss_dssp             EEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEechhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887654

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=100.00  E-value=4.6e-54  Score=354.70  Aligned_cols=192  Identities=24%  Similarity=0.397  Sum_probs=185.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|+
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia  122 (289)
T 2yxg_A           45 GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPT--QEGLRKHFGKVA  122 (289)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++||++||+|.+||++++++++.+|+ ++|||+|||++  |..++.++++ ..  +|.||+|+|.++++++..|++|
T Consensus       123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiK~s~gd~~~~~~~~~-~~--~f~v~~G~d~~~~~~l~~G~~G  199 (289)
T 2yxg_A          123 ESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSELIH-DA--KITVLSGNDELTLPIIALGGKG  199 (289)
T ss_dssp             HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCSCTHHHHHHHH-HT--CSEEEESCGGGHHHHHHTTCCE
T ss_pred             HhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHH-hC--CeEEEECcHHHHHHHHHCCCCE
Confidence            99999999999999999999999999999 89999999999  8999988874 33  8999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       200 ~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  241 (289)
T 2yxg_A          200 VISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPLMKAM  241 (289)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987653

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=100.00  E-value=4.6e-54  Score=356.84  Aligned_cols=191  Identities=25%  Similarity=0.422  Sum_probs=184.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        61 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~--~~~l~~~f~~ia  138 (304)
T 3cpr_A           61 GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPS--QEGLLAHFGAIA  138 (304)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++. .  +|.||+|+|.++++.+..|++|+
T Consensus       139 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~~-~--~f~v~~G~d~~~l~~l~~G~~G~  215 (304)
T 3cpr_A          139 AATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAVXDAKGDLVAATSLIKE-T--GLAWYSGDDPLNLVWLALGGSGF  215 (304)
T ss_dssp             HHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHHH-H--CCEEEECSGGGHHHHHHTTCCEE
T ss_pred             HhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHh-c--CEEEEECcHHHHHHHHHCCCCEE
Confidence            9999999999999999999999999999999999999999  89999888743 3  89999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       216 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  255 (304)
T 3cpr_A          216 ISVIGHAAPTALRELYTSFEEGDLVRAREINAKLSPLVAA  255 (304)
T ss_dssp             EESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred             EecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.8e-54  Score=359.57  Aligned_cols=193  Identities=20%  Similarity=0.287  Sum_probs=186.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        69 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  146 (315)
T 3na8_A           69 GEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLN--EAEVFQHYRAVG  146 (315)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHH-HcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L-~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++||++||+|.+||++++++++.+| +++|||+|||++  |..++.++++ ..+++|.||+|.|.++++.+..|++|
T Consensus       147 ~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~D~~~l~~l~~G~~G  225 (315)
T 3na8_A          147 EAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKESTGDIQRMHKLRL-LGEGRVPFYNGCNPLALEAFVAGAKG  225 (315)
T ss_dssp             HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEECSSCHHHHHHHHH-HTTTCSCEEECCGGGHHHHHHHTCSE
T ss_pred             HhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHH-HcCCCEEEEeCchHHHHHHHHCCCCE
Confidence            9999999999999999999999999999 799999999999  8999998884 56789999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       226 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  266 (315)
T 3na8_A          226 WCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLPLLDF  266 (315)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHH
T ss_pred             EEechhhhCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998865

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=100.00  E-value=3.2e-54  Score=358.15  Aligned_cols=193  Identities=23%  Similarity=0.379  Sum_probs=185.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        57 GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  134 (306)
T 1o5k_A           57 GESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPT--QEGLYQHYKYIS  134 (306)
T ss_dssp             GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCC---CeEEEecChhhHHHHhhcC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDL---NFSVFAGSAGYLLSGLLVG  153 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~---~~~v~~G~d~~~~~~l~~G  153 (198)
                      +++++||++||+|.+||++++++++.+|+ ++|||+|||++  |..++.++++ ..++   +|.||+|+|.++++++..|
T Consensus       135 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~~~~-~~~~~~~~f~v~~G~d~~~l~~l~~G  213 (306)
T 1o5k_A          135 ERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVS-LTKQARSDFMVWSGNDDRTFYLLCAG  213 (306)
T ss_dssp             TTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHHHHHHH-HHHHHCTTCEEEESSGGGHHHHHHHT
T ss_pred             HhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHH-hcCCCCCcEEEEECcHHHHHHHHHCC
Confidence            99999999999999999999999999999 89999999999  8999888874 3334   8999999999999999999


Q ss_pred             CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       214 ~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  257 (306)
T 1o5k_A          214 GDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLMKA  257 (306)
T ss_dssp             CCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998864

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=100.00  E-value=9.8e-54  Score=354.52  Aligned_cols=193  Identities=28%  Similarity=0.394  Sum_probs=186.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ||+++||.+||+++++.+++++   |+|||+|+|+++|+++++++++|+++|+|+++++||||++++  ++++++||++|
T Consensus        52 GE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~v  129 (301)
T 3m5v_A           52 GESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPT--QQGLYEHYKAI  129 (301)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHH
Confidence            8999999999999999999998   599999999999999999999999999999999999999998  99999999999


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCC
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCA  155 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~  155 (198)
                      ++++++||++||+|.+||++++++++.+|+++ |||+|||++  |..++.++++ .. ++|.||+|.|.++++.+..|++
T Consensus       130 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKdssgd~~~~~~~~~-~~-~~f~v~~G~d~~~~~~l~~G~~  207 (301)
T 3m5v_A          130 AQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLA-HE-PRMMLISGEDAINYPILSNGGK  207 (301)
T ss_dssp             HHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSSCHHHHHHHHH-HC-TTSEEEECCGGGHHHHHHTTCC
T ss_pred             HHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hC-CCeEEEEccHHHHHHHHHcCCC
Confidence            99999999999999999999999999999987 999999999  9999999885 45 8999999999999999999999


Q ss_pred             eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         156 GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       156 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      |++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       208 G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  250 (301)
T 3m5v_A          208 GVISVTSNLLPDMISALTHFALDENYKEAKKINDELYNINKIL  250 (301)
T ss_dssp             EEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHT
T ss_pred             EEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=6.2e-54  Score=359.65  Aligned_cols=193  Identities=26%  Similarity=0.295  Sum_probs=186.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        79 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s--~~~l~~~f~~VA  156 (332)
T 2r8w_A           79 GIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLT--QEEAYHHFAAVA  156 (332)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C----HHHHHHHHhhcCCCCeEEEecChhhHHHHhhcC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVG  153 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d----~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G  153 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |    ..++.++++ ..+++|.||+|.|.++++.+..|
T Consensus       157 ~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiKdssgd~~~~~~~~~~l~~-~~~~~f~v~~G~D~~~l~~l~~G  235 (332)
T 2r8w_A          157 GATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPLPADADYAGELARLRP-KLSDDFAIGYSGDWGCTDATLAG  235 (332)
T ss_dssp             HHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEEECCCTTCCHHHHHHHHTT-TSCTTCEEEECCHHHHHHHHHTT
T ss_pred             HhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEEeCCCCchhHHHHHHHHHH-hcCCCEEEEeCchHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999  8    889988873 45678999999999999999999


Q ss_pred             CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       236 ~~G~is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  279 (332)
T 2r8w_A          236 GDTWYSVVAGLLPVPALQLMRAAQAGNAEEAKRLDATFQPLWAL  279 (332)
T ss_dssp             CSEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHH
T ss_pred             CCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998764

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=100.00  E-value=4.9e-54  Score=356.55  Aligned_cols=192  Identities=21%  Similarity=0.385  Sum_probs=185.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        56 GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  133 (303)
T 2wkj_A           56 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFS--FEEHCDHYRAII  133 (303)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      ++++ +||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++ . .++|.||+|.|.++++.+..|++|
T Consensus       134 ~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~gd~~~~~~~~~-~-~~~f~v~~G~d~~~~~~l~~G~~G  211 (303)
T 2wkj_A          134 DSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRR-E-HPDLVLYNGYDNIFASGLLAGADG  211 (303)
T ss_dssp             HHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECCCCHHHHHHHHH-H-CTTCEEEECCGGGHHHHHHHTCCE
T ss_pred             HhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHH-h-CCCeEEEeCcHHHHHHHHHCCCCE
Confidence            9999 999999999999999999999999999999999999  8999988884 3 569999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       212 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  252 (303)
T 2wkj_A          212 GIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDL  252 (303)
T ss_dssp             EEETTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998764

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=100.00  E-value=1e-53  Score=355.62  Aligned_cols=193  Identities=26%  Similarity=0.478  Sum_probs=186.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCC-CEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGA-NAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Ga-d~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+ |+++++||+|++++  ++++++||++|
T Consensus        52 GE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s--~~~l~~~f~~v  129 (311)
T 3h5d_A           52 AESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPS--QEGMYQHFKAI  129 (311)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCC--HHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCC--HHHHHHHHHHH
Confidence            8999999999999999999998  9999999999999999999999999997 99999999999998  99999999999


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      ++++++||++||+|++||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus       130 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~Ga~G~  208 (311)
T 3h5d_A          130 ADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYLIE-HKPEEFLIYTGEDGDAFHAMNLGADGV  208 (311)
T ss_dssp             HHSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSCHHHHHHHHH-HCCSSCEEEECCGGGHHHHHHHTCCEE
T ss_pred             HHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEeCCCHHHHHHHHH-HcCCCEEEEECcHHHHHHHHHcCCCEE
Confidence            99999999999999999999999999999999999999999 9999988874 567889999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       209 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  248 (311)
T 3h5d_A          209 ISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKFIPKVNA  248 (311)
T ss_dssp             EESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=100.00  E-value=5.1e-54  Score=356.51  Aligned_cols=191  Identities=26%  Similarity=0.401  Sum_probs=184.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        60 GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  137 (304)
T 3l21_A           60 GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPP--QRGLQAHFTAVA  137 (304)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |+.++.+++ .  +++|.+|+|.|.++++.+..|++|+
T Consensus       138 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~-~--~~~f~v~~G~d~~~l~~l~~Ga~G~  214 (304)
T 3l21_A          138 DATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDAKADLHSGAQIM-A--DTGLAYYSGDDALNLPWLRMGATGF  214 (304)
T ss_dssp             TSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHH-H--HHCCEEEESSGGGHHHHHHHTCCEE
T ss_pred             HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEECCCCCHHHHHHHh-c--CCCeEEEeCchHHHHHHHHcCCCEE
Confidence            9999999999999999999999999999999999999999  999988877 2  4789999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       215 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  254 (304)
T 3l21_A          215 ISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCNA  254 (304)
T ss_dssp             EESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred             EecHHhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=100.00  E-value=1e-53  Score=359.59  Aligned_cols=194  Identities=27%  Similarity=0.392  Sum_probs=186.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        76 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s--~~~l~~~f~~VA  153 (343)
T 2v9d_A           76 GEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVS--EANLIRYFEQVA  153 (343)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCC---CCeEEEecChhhHHHHhhcC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKD---LNFSVFAGSAGYLLSGLLVG  153 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~---~~~~v~~G~d~~~~~~l~~G  153 (198)
                      +++++||++||+|.+||++++++++.+|+ ++|||+|||++  |..++.++++ ..+   ++|.||+|+|.++++.+..|
T Consensus       154 ~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgiKdssgd~~~~~~l~~-~~~~~~~~f~v~~G~D~~~l~~l~~G  232 (343)
T 2v9d_A          154 DSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMIH-TVKGAHPHFTVLCGYDDHLFNTLLLG  232 (343)
T ss_dssp             HTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHH-HHHHHCTTCEEEESSGGGHHHHHHTT
T ss_pred             HhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHH-hcCCCCCCEEEEECcHHHHHHHHHCC
Confidence            99999999999999999999999999999 89999999999  9999888874 334   68999999999999999999


Q ss_pred             CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      ++|+||+++|++|+.++++|+++++||+++|+++|+++.++++.+
T Consensus       233 a~G~is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~  277 (343)
T 2v9d_A          233 GDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQIPQMY  277 (343)
T ss_dssp             CCEECCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHGGGGG
T ss_pred             CCEEEeCHHHhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998653

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=100.00  E-value=7.9e-53  Score=351.22  Aligned_cols=195  Identities=36%  Similarity=0.552  Sum_probs=179.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISV   78 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i   78 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||+|+ +|. +++++++||++|
T Consensus        56 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~-~~~~l~~~f~~i  134 (318)
T 3qfe_A           56 AEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKAT-TPPVIKSFFDDV  134 (318)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CC-CHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCC-CHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999877 442 399999999999


Q ss_pred             HccCCCCEEEEeCCCCc-ccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCC
Q psy9711          79 ADNSPIPVIIYNNTFVT-NIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGC  154 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~t-g~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~  154 (198)
                      ++++++||++||+|++| |++++++++.+|++ +|||+|||++  |+.++.++++...+++|.+|+|+|.++++++..|+
T Consensus       135 a~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~  214 (318)
T 3qfe_A          135 SCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDFLIGGLSVGS  214 (318)
T ss_dssp             HHHCSSCEEEEECCC----CCCCHHHHHHHHHHCTTEEEEEESSCCHHHHHHHHHHSCGGGCEEEESCGGGHHHHHHTTC
T ss_pred             HhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHhcCCCCEEEEEecHHHHHHHHHCCC
Confidence            99999999999999997 99999999999997 9999999998  99999888743334789999999999999999999


Q ss_pred             CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|++|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       215 ~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~~~~~  257 (318)
T 3qfe_A          215 AGCIAAFANVFPKTVSKIYELYKAGKVDQAMELHRKAALAESP  257 (318)
T ss_dssp             CEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred             CEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987653

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=100.00  E-value=3.2e-53  Score=350.10  Aligned_cols=190  Identities=26%  Similarity=0.402  Sum_probs=181.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        47 GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~ia  124 (292)
T 3daq_A           47 AESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTN--QRGLVKHFEAIA  124 (292)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  999999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC-CeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL-NFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~-~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++++||++||+|.+||++++++++.+|+++|||+|||++  |+.++.++++ ..++ +|.||+|.|.++++++..|++|
T Consensus       125 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ssgd~~~~~~~~~-~~~~~~f~v~~G~d~~~~~~l~~G~~G  203 (292)
T 3daq_A          125 DAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKK-RIDTNSFALYSGNDDNVVEYYQRGGQG  203 (292)
T ss_dssp             HHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECCCCHHHHHHHHT-TSCTTTSEEEESCGGGHHHHHHTTCCE
T ss_pred             HhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-HCCCCCEEEEECCHHHHHHHHhcCCCE
Confidence            9999999999999999999999999999999999999999  9999998884 4556 8999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcC-CHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAG-KWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~g-d~~~A~~l~~~~~~l~~~  197 (198)
                      ++|+++|++|+.++++|+++++| |+++|++   ++.|+++.
T Consensus       204 ~is~~~n~~P~~~~~l~~a~~~g~d~~~A~~---~l~~l~~~  242 (292)
T 3daq_A          204 VISVIANVIPKEFQALYDAQQSGLDIQDQFK---PIGTLLSA  242 (292)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHTTCCCHHHHH---HHHHHHHH
T ss_pred             EEeCHHHhhHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHH
Confidence            99999999999999999999999 9999998   67776653

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-53  Score=348.65  Aligned_cols=188  Identities=26%  Similarity=0.386  Sum_probs=181.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-CCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-KMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~~~~~~i~~y~~~i~~   80 (198)
                      ||+++||.+||+++++.+++  |+|||+|+|+++|+++++++++|+++|||+++++||||+++ +  ++++++||++|++
T Consensus        42 GE~~~Ls~~Er~~v~~~~~~--rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~--~~~l~~~f~~va~  117 (283)
T 2pcq_A           42 GEGVHLTPEERARGLRALRP--RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSL--GAGLLRYYEALAE  117 (283)
T ss_dssp             TTGGGSCHHHHHHHHHTCCC--SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGT--TTHHHHHHHHHHH
T ss_pred             cCchhcCHHHHHHHHHHHHh--CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCC--HHHHHHHHHHHhc
Confidence            89999999999999999998  99999999999999999999999999999999999999999 8  9999999999999


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEE
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGI  158 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~i  158 (198)
                        ++||++||+|.+||++++++++.+|+++|||+|||++  |..++.++++  .+++|.+|+|+|.++++++..|++|++
T Consensus       118 --~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdssgd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~G~~G~i  193 (283)
T 2pcq_A          118 --KMPLFLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSGDLSRIAFYQA--RLQEFRVYTGHAPTFLGALALGAEGGI  193 (283)
T ss_dssp             --HSCEEEEECHHHHCCCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH--HCSSCEEEECCGGGHHHHHHTTCCEEE
T ss_pred             --CCCEEEEeCccccCcCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHh--cCCCEEEEECcHHHHHHHHHcCCCEEE
Confidence              9999999999999999999999999999999999999  9999988874  567999999999999999999999999


Q ss_pred             ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      |+++|++|+.++++|+++++||+++|+++|+++.+++++
T Consensus       194 s~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  232 (283)
T 2pcq_A          194 LAAANLAPRAYRALLDHFREGRLAEAQELQKKLFPLGDL  232 (283)
T ss_dssp             CGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             eCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998764

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=100.00  E-value=7.6e-52  Score=341.03  Aligned_cols=187  Identities=24%  Similarity=0.281  Sum_probs=180.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++ +  ||+|+|+++|+++++++++|+++|||+++++||||++ ++  ++++++||++|+
T Consensus        43 GE~~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~va  118 (286)
T 2r91_A           43 GLGPALSLQEKMELTDAATSAARR--VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLS--ERQIAKYFRDLC  118 (286)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHCSS--EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCC--EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999999 6  9999999999999999999999999999999999999 88  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+   +|||+|||++  |..++.++++  .+++|.||+|+|.++++++..|++|+
T Consensus       119 ~a~~lPiilYn~P~~tg~~l~~~~~~~---~pnivgiKds~gd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~G~~G~  193 (286)
T 2r91_A          119 SAVSIPVFLYNYPAAVGRDVDARAAKE---LGCIRGVKDTNESLAHTLAYKR--YLPQARVYNGSDSLVFASFAVRLDGV  193 (286)
T ss_dssp             HHCSSCEEEEECHHHHSSCCCHHHHHH---HSCEEEEEECCSCHHHHHHHHH--HCTTSEEEECCGGGHHHHHHTTCSEE
T ss_pred             HhcCCCEEEEeChhhcCCCCCHHHHHh---cCCEEEEEeCCCCHHHHHHHHh--cCCCEEEEEccHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999   8999999999  9999988884  56799999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       194 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  233 (286)
T 2r91_A          194 VASSANYLPELLAGIRDAVAAGDIERARSLQFLLDEIVES  233 (286)
T ss_dssp             CCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=100.00  E-value=1.7e-51  Score=342.80  Aligned_cols=188  Identities=20%  Similarity=0.239  Sum_probs=180.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+ +|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus        57 GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  133 (314)
T 3d0c_A           57 GEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYIT--DAGAVEYYRNII  133 (314)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCC--HHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  8999999999 9999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC--CeEEEecChh-hHHHHhhcCC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL--NFSVFAGSAG-YLLSGLLVGC  154 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~--~~~v~~G~d~-~~~~~l~~G~  154 (198)
                      +++++||++||   +||+ ++++++.+|+++|||+|||++  |+.++.++++ ..++  +|.||+|+|. ++++.+..|+
T Consensus       134 ~a~~lPiilYn---~tg~-l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~~~f~v~~G~d~~~~~~~l~~G~  208 (314)
T 3d0c_A          134 EALDAPSIIYF---KDAH-LSDDVIKELAPLDKLVGIKYAINDIQRVTQVMR-AVPKSSNVAFICGTAEKWAPFFYHAGA  208 (314)
T ss_dssp             HHSSSCEEEEE---CCTT-SCTHHHHHHTTCTTEEEEEECCCCHHHHHHHHH-HSCGGGCCEEEETTHHHHHHHHHHHTC
T ss_pred             HhCCCCEEEEe---CCCC-cCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCCCEEEEEeCcHHHHHHHHHcCC
Confidence            99999999999   8999 999999999999999999999  9999988874 4456  8999999999 9999999999


Q ss_pred             CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|++|+++|++|+.++++|+++++||+++|+++|+++.|++++
T Consensus       209 ~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  251 (314)
T 3d0c_A          209 VGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWEDVVPFEDL  251 (314)
T ss_dssp             CEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998764

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=100.00  E-value=1.2e-51  Score=340.79  Aligned_cols=187  Identities=25%  Similarity=0.263  Sum_probs=180.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++ +  ||+|+|+++|+++++++++|+++|||+++++||||++ ++  ++++++||++|+
T Consensus        44 GE~~~Ls~eEr~~v~~~~~~~~~g--viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~va  119 (293)
T 1w3i_A           44 GLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMS--EKHLVKYFKTLC  119 (293)
T ss_dssp             TTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHcCC--EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998 6  9999999999999999999999999999999999999 88  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+   +|||+|||++  |..++.++++  .+++|.||+|+|.++++++..|++|+
T Consensus       120 ~a~~lPiilYn~P~~tg~~l~~~~~~~---~pnIvgiKds~gd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~G~~G~  194 (293)
T 1w3i_A          120 EVSPHPVYLYNYPTATGKDIDAKVAKE---IGCFTGVKDTIENIIHTLDYKR--LNPNMLVYSGSDMLIATVASTGLDGN  194 (293)
T ss_dssp             HHCSSCEEEEECHHHHSCCCCHHHHHH---HCCEEEEEECCSCHHHHHHHHH--HCTTSEEEECCSTTHHHHHHTTCCEE
T ss_pred             hhCCCCEEEEECchhhCcCCCHHHHHh---cCCEEEEEeCCCCHHHHHHHHh--cCCCEEEEEccHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999   8999999999  9999988884  56799999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|++++
T Consensus       195 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  234 (293)
T 1w3i_A          195 VAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEA  234 (293)
T ss_dssp             ECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=6.3e-50  Score=336.39  Aligned_cols=189  Identities=21%  Similarity=0.274  Sum_probs=178.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.  ... |+|||+|+|+++|+++++++++|+++|+|+++++||||++ ++  ++++++||++|+
T Consensus        71 GE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~IA  146 (344)
T 2hmc_A           71 GDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSV--IAAQKAHFKAIL  146 (344)
T ss_dssp             GTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCC--HHHHHHHHHHHH
Confidence            89999999999999999  333 9999999999999999999999999999999999999999 87  999999999999


Q ss_pred             c-cCCCCEEEEeCCCCcccccCHHHHHHH-HcCCCEEEEeeC-C---HHHHHHHHhhcCCCCeEEEecChhhHHHHh-hc
Q psy9711          80 D-NSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDT-D---NIKLANMANQTKDLNFSVFAGSAGYLLSGL-LV  152 (198)
Q Consensus        80 ~-~~~~pi~lYn~P~~tg~~l~~~~l~~L-~~~p~i~giK~s-d---~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l-~~  152 (198)
                      + ++++||++||+| +||++++++++.+| +++|||+|||++ .   ..++.+++ +..+++|.||+|.|.++++++ ..
T Consensus       147 ~aa~~lPiilYn~P-~tg~~l~~e~~~~L~a~~pnIvGiKdssgp~d~~~~~~~~-~~~~~~f~v~~G~D~~~l~~l~~~  224 (344)
T 2hmc_A          147 SAAPEIPAVIYNSP-YYGFATRADLFFALRAEHKNLVGFKEFGGPADMRYAAENI-TSRDDEVTLMIGVDTAVVHGFVNC  224 (344)
T ss_dssp             HHSTTSCEEEEEBG-GGTBCCCHHHHHHHHHHCTTEEEEEECSCHHHHHHHHHHT-SCSSSSCEEEECSGGGHHHHHHHS
T ss_pred             hhCCCCcEEEEecC-ccCCCcCHHHHHHHHhcCCCEEEEEcCCCCCCHHHHHHHH-HHcCCCEEEEECcHHHHHHHHHHc
Confidence            9 899999999999 99999999999999 899999999999 6   56777776 345679999999999999999 99


Q ss_pred             CCCeEEecccccchHHHHHHHHH---HHcCCHHHHHHHHHHhh----chhhc
Q psy9711         153 GCAGGINALSAVLGGPICELYDL---AKAGKWEEAMKLQHRLV----KPDVT  197 (198)
Q Consensus       153 G~~G~is~~~n~~P~~~~~l~~~---~~~gd~~~A~~l~~~~~----~l~~~  197 (198)
                      |++|+||+++|++|+.++++|++   +++|| ++|+++|+++.    |+++.
T Consensus       225 Ga~G~is~~anv~P~~~~~l~~a~~~~~~Gd-~~A~~l~~~l~~~~~~l~~~  275 (344)
T 2hmc_A          225 GATGAITGIGNVLPKEVIHLCKLSQAAAKGD-ADARARALELEQALAVLSSF  275 (344)
T ss_dssp             CCCEEEESGGGTSHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTHHHHHG
T ss_pred             CCCEEEeCHHHhhHHHHHHHHHhHHHHhcCc-HHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999   99999 99999999999    88764

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=100.00  E-value=2.7e-50  Score=332.05  Aligned_cols=185  Identities=23%  Similarity=0.289  Sum_probs=178.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++ +  ||+|+|+++|+++++++++|+++|||+++++||||++ ++  ++++++||++|+
T Consensus        44 GE~~~Ls~eEr~~v~~~~~~~~~g--ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~va  119 (288)
T 2nuw_A           44 GLGPALSKDEKRQNLNALYDVTHK--LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYFPRLP--EKFLAKYYEEIA  119 (288)
T ss_dssp             TTGGGSCHHHHHHHHHHHTTTCSC--EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCC--HHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCC--eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998 6  9999999999999999999999999999999999999 88  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|.+||++++++++.+|    ||+|||++  |..++.++++  .+++|.||+|+|.++++++.. ++|+
T Consensus       120 ~a~~lPiilYn~P~~tg~~l~~~~~~~L----nIvgiKdssgd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~-~~G~  192 (288)
T 2nuw_A          120 RISSHSLYIYNYPAATGYDIPPSILKSL----PVKGIKDTNQDLAHSLEYKL--NLPGVKVYNGSNTLIYYSLLS-LDGV  192 (288)
T ss_dssp             HHCCSCEEEEECHHHHSCCCCHHHHTTT----TEEEEEECCSCHHHHHHHHH--HSTTCEEEECCGGGHHHHHTT-SSEE
T ss_pred             HhcCCCEEEEECchHhCcCCCHHHHhcc----EEEEEEeCCCCHHHHHHHHh--cCCCeEEEECcHHHHHHHHHH-hCEE
Confidence            9999999999999999999999999999    99999999  9999988884  567999999999999999999 9999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       193 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  232 (288)
T 2nuw_A          193 VASFTNFIPEVIVKQRDLIKQGKLDDALRLQELINRLADI  232 (288)
T ss_dssp             ECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             EecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=100.00  E-value=6.6e-50  Score=332.48  Aligned_cols=190  Identities=20%  Similarity=0.306  Sum_probs=176.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC---cCCCCCHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY---FQKKMTEDLIYEHFI   76 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y---~~~~~~~~~i~~y~~   76 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||   ++++  ++++++||+
T Consensus        53 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s--~~~l~~~f~  130 (309)
T 3fkr_A           53 SEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVP--EAQIFEFYA  130 (309)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCC--HHHHHHHHH
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCC--HHHHHHHHH
Confidence            8999999999999999999998  99999999999999999999999999999999999999   6887  999999999


Q ss_pred             HHHccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEe-eC--CHHHHHHHHhhcCCCCe-EEEecChhh-HHHHh
Q psy9711          77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK-DT--DNIKLANMANQTKDLNF-SVFAGSAGY-LLSGL  150 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK-~s--d~~~~~~~~~~~~~~~~-~v~~G~d~~-~~~~l  150 (198)
                      +|++++++||++||+|. ||++++++++.+|+ ++|||+||| ++  |..++.++++ ..+++| .+|+|+|.. +++.+
T Consensus       131 ~va~a~~lPiilYn~P~-tg~~l~~~~~~~La~~~pnIvgiK~~~~~~~~~~~~~~~-~~~~~~~~~~~G~d~~~l~~~l  208 (309)
T 3fkr_A          131 RVSDAIAIPIMVQDAPA-SGTALSAPFLARMAREIEQVAYFXIETPGAANKLRELIR-LGGDAIEGPWDGEEAITLLADL  208 (309)
T ss_dssp             HHHHHCSSCEEEEECGG-GCCCCCHHHHHHHHHHSTTEEEEEECSSSHHHHHHHHHH-HHGGGCCEEEECGGGTTHHHHH
T ss_pred             HHHHhcCCCEEEEeCCC-CCCCCCHHHHHHHHhhCCCEEEEECCCcchHHHHHHHHH-hcCCceeeecCCchHHHHHHHH
Confidence            99999999999999997 99999999999999 599999999 56  6788888774 344566 689999986 67999


Q ss_pred             hcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         151 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       151 ~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ..|++|+|+  +|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       209 ~~G~~G~i~--~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  253 (309)
T 3fkr_A          209 HAGATGAMT--GGGFPDGIRPILEAWREGRHDDAYARYQAWLPLINH  253 (309)
T ss_dssp             HTTCCEECC--CSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCcEEEE--hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999985  589999999999999999999999999999998764

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=100.00  E-value=6e-50  Score=333.37  Aligned_cols=190  Identities=15%  Similarity=0.221  Sum_probs=177.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++|||| +++  ++++++||++|++
T Consensus        53 GE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~-~~s--~~~l~~~f~~va~  129 (313)
T 3dz1_A           53 GEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPS-LRT--DEQITTYFRQATE  129 (313)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT-CCS--HHHHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-CCC--HHHHHHHHHHHHH
Confidence            8999999999999999999999 99999999999999999999999999999999999985 577  9999999999999


Q ss_pred             cCC--CCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEee-C--CHHHHHHHHhhcCC----CCeEEEecChhhHHH-H
Q psy9711          81 NSP--IPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKD-T--DNIKLANMANQTKD----LNFSVFAGSAGYLLS-G  149 (198)
Q Consensus        81 ~~~--~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~-s--d~~~~~~~~~~~~~----~~~~v~~G~d~~~~~-~  149 (198)
                      +++  +||++||+|.+||++++++++.+|+ ++|||+|||+ +  |..++.++++ ..+    ++|.||+|+|.++++ +
T Consensus       130 a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKd~~~~~~~~~~~~~~-~~~~~~~~~f~v~~G~d~~~l~~~  208 (313)
T 3dz1_A          130 AIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHEDWPGLEKITTLRG-FQKDGSLRPLSILCGNGGLFLDFE  208 (313)
T ss_dssp             HHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSEEEEEECCSSCHHHHHHHHH-HHHHTSSCCCEEEECGGGTTHHHH
T ss_pred             hCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHH-hcCccCCCCeEEEeCCcHHHHHHH
Confidence            998  9999999999999999999999999 5999999998 4  8888888774 333    789999999998777 5


Q ss_pred             hhcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         150 LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       150 l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +..|++|+|++  |++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       209 l~~G~~G~i~~--~~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~  254 (313)
T 3dz1_A          209 MERGADGAMTG--YCFPDMLVDVVKLSKAGQRDLAHNLFDAHLPLIRY  254 (313)
T ss_dssp             HHHTCCEEEEC--CSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCcEEEeC--cccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999985  68999999999999999999999999999998764

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=100.00  E-value=3.6e-49  Score=329.08  Aligned_cols=187  Identities=21%  Similarity=0.238  Sum_probs=175.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+ +|+++++++++|+++|||++++++|||++++  ++++++||++|+
T Consensus        57 GE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va  133 (316)
T 3e96_A           57 SEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVT--AGGVYAYFRDII  133 (316)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCC--HHHHHHHHHHHH
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  8999999997 9999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC-CeE-EEecChhh-HHHHhhcCC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL-NFS-VFAGSAGY-LLSGLLVGC  154 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~-~~~-v~~G~d~~-~~~~l~~G~  154 (198)
                      +++++||++||+    |.+++++++.+|+++|||+|||++  |+.++.++++ ..++ +|. +|+|.|+. +...+..|+
T Consensus       134 ~a~~lPiilYn~----g~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~~f~~v~~G~d~~~~~~~l~~G~  208 (316)
T 3e96_A          134 EALDFPSLVYFK----DPEISDRVLVDLAPLQNLVGVKYAINDLPRFAKVVR-SIPEEHQIAWICGTAEKWAPFFWHAGA  208 (316)
T ss_dssp             HHHTSCEEEEEC----CTTSCTHHHHHHTTCTTEEEEEECCCCHHHHHHHHT-TSCGGGCCEEEETTCTTTHHHHHHHTC
T ss_pred             HhCCCCEEEEeC----CCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCCceEEEeCChHHHHHHHHHCCC
Confidence            999999999996    779999999999999999999999  9999998884 4455 898 99999876 445679999


Q ss_pred             CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711         155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV  196 (198)
Q Consensus       155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~  196 (198)
                      +|++|+++|++|+.++++|+++++||+++|+++|+++.|+.+
T Consensus       209 ~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~  250 (316)
T 3e96_A          209 KGFTSGLVNLLPQKAVEMLEALRNNDNDAVWRIWEDIVPFED  250 (316)
T ss_dssp             CEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999998753

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=2.5e-49  Score=327.05  Aligned_cols=183  Identities=22%  Similarity=0.349  Sum_probs=172.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISV   78 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i   78 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|+|+++++||||++ ++  ++++++||++|
T Consensus        48 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~v  125 (294)
T 3b4u_A           48 GEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVS--DDGLFAWFSAV  125 (294)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCC--HHHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC--HHHHHHHHHHH
Confidence            8999999999999999999998  8999999999999999999999999999999999999999 88  99999999999


Q ss_pred             HccC---CCCEEEEeCCCCcccccCHHHHHHHH-cCCC-EEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhh
Q psy9711          79 ADNS---PIPVIIYNNTFVTNIDISVDTLVKLA-HHEN-IRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLL  151 (198)
Q Consensus        79 ~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~-i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~  151 (198)
                      ++++   ++||++||+|.+||++++++++.+|+ ++|| |+|||++  |..++.++++ ..+ +|.||+|+|.++++++.
T Consensus       126 a~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~gd~~~~~~~~~-~~~-~f~v~~G~d~~~l~~l~  203 (294)
T 3b4u_A          126 FSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLK-EHG-DLAILIGDERDLARGVR  203 (294)
T ss_dssp             HHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECCCCHHHHHHHHH-HHT-TSEEEECCHHHHHHHHH
T ss_pred             HHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHH-hCC-CeEEEEccHHHHHHHHH
Confidence            9999   99999999999999999999999999 8999 9999999  8999988874 334 89999999999999999


Q ss_pred             cCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         152 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       152 ~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      .|++|++|+++|++|+.++++|+   +      +++|+++.|+++.
T Consensus       204 ~G~~G~is~~~n~~P~~~~~l~~---~------~~l~~~l~~l~~~  240 (294)
T 3b4u_A          204 LGGQGAISGVANFLTQEVRAMAV---D------GKDDPRIVDLVVE  240 (294)
T ss_dssp             TTCCEEEESGGGTCHHHHHHHHT---T------CCCCHHHHHHHHH
T ss_pred             CCCCEEEeCHHHhCHHHHHHHHH---H------HHHHHHHHHHHHH
Confidence            99999999999999999999998   1      6777777777653

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=100.00  E-value=1.2e-46  Score=316.51  Aligned_cols=182  Identities=25%  Similarity=0.312  Sum_probs=166.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+|+|+++|+++++++++|+++|||+++++||||++++  ++++++||++|+
T Consensus       104 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~s--q~gl~~hf~~IA  181 (360)
T 4dpp_A          104 GEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS--IEGLIAHFQSVL  181 (360)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHTTG
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999998  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHHH-HhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLLS-GLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~~-~l~~G~~G~  157 (198)
                      ++  +||++||+|++||++++++++.+|+++|||+|||++ .-.++.+.    .+++|.||+|.|.++++ .+..|++|+
T Consensus       182 ~a--~PiilYNiP~rTg~~ls~e~l~~La~~pnIvGIKdssgd~~i~~~----~~~~f~v~sG~D~~~l~~~l~~Ga~G~  255 (360)
T 4dpp_A          182 HM--GPTIIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEY----TENGVVVWSGNDDECHDSRWDYGATGV  255 (360)
T ss_dssp             GG--SCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCHHHHHHH----HHTTCCEEECCGGGHHHHHHHSCCCEE
T ss_pred             Hh--CCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEEeCCCcHHHHHh----hCCCEEEEeCChHHHHHHHHHcCCCEE
Confidence            97  699999999999999999999999999999999999 33444332    24789999999988765 589999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+   +|+   |+++|+++.|+++.
T Consensus       256 Is~~aNv~P~~~~~l~~---aG~---a~~l~~~l~pl~~~  289 (360)
T 4dpp_A          256 ISVTSNLVPGLMRKLMF---EGR---NSSLNSKLLPLMAW  289 (360)
T ss_dssp             EESGGGTCHHHHHHHHH---SCC---CHHHHHHHHHHHHH
T ss_pred             EccchhhcHHHHHHHHH---hhh---HHHHHHHHHHHHHH
Confidence            99999999999999987   464   67899999998864

>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}

Probab=99.29  E-value=1.4e-10  Score=94.45  Aligned_cols=190  Identities=14%  Similarity=0.096  Sum_probs=145.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhc----CCeEEEeCCCCc--------HHHH----HHHHHHHHhcCCCEEEEcCCCCcCCCCC
Q psy9711           4 SFKSTEEEKLKIISTLRQET----KKTIIAGTYCES--------TRAT----IDLTQKAAKAGANAALILCPYYFQKKMT   67 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~----~~pvi~gv~~~~--------~~~~----i~~a~~a~~~Gad~v~~~~P~y~~~~~~   67 (198)
                      ++-|+...-+++++....++    +..|.+|+|+..        .++.    .|+....++.|+..+++.+-...+...+
T Consensus        88 GMGLDW~~a~ELIrRs~aeA~~~pg~~ia~G~GTDqL~~~~~~~l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A~~  167 (396)
T 4dnh_A           88 GMGLGWPEARELIRRSLAEARGRPDALIACGAGTDHLAPGPDVSIDDILAAYESQIEAIEAEGGRIILMASRALAAAAKG  167 (396)
T ss_dssp             TTTBCHHHHHHHHHHHHHHHHTSSSCCEEEEECCTTSCCCTTCCHHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHCCS
T ss_pred             cCCCCcHHHHHHHHHHHHHHhcCCCCeeeeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHhCC
Confidence            45678888999999988877    456888988533        3333    5677888999999998887666543345


Q ss_pred             HHHHHHHHHHHHccCCCCEEEEeC-----CCCcccc------cCHHHHHHHH-cC-CCEEEEeeC--CHHHHHHHHhhcC
Q psy9711          68 EDLIYEHFISVADNSPIPVIIYNN-----TFVTNID------ISVDTLVKLA-HH-ENIRGVKDT--DNIKLANMANQTK  132 (198)
Q Consensus        68 ~~~i~~y~~~i~~~~~~pi~lYn~-----P~~tg~~------l~~~~l~~L~-~~-p~i~giK~s--d~~~~~~~~~~~~  132 (198)
                      +++..+-|..|.++++-|||++..     |...|+.      -..+++.+|. ++ ..|-|||.|  |..+-..++ +..
T Consensus       168 pdDY~~VY~~vL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~lI~~~~~kVDGIKiSLLDa~~Ei~lR-rrL  246 (396)
T 4dnh_A          168 PEDYIRVYDRVLSQVKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVLEAHAAKVDGIKISLLSKEKEIVMR-RQL  246 (396)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEEECTTTCGGGTTTTSCSSHHHHHHHHHHHHHHTGGGEEEEEEESCCHHHHHHHH-TSC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEecccccChhhccccCCCCHHHHHHHHHHHHHhChhhcCceEEeeeccHhHHHHH-HhC
Confidence            999999999999999999999985     6666652      3356777777 56 589999999  988877777 457


Q ss_pred             CCCeEEEecChhhHHHHhhcC-----CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711         133 DLNFSVFAGSAGYLLSGLLVG-----CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV  196 (198)
Q Consensus       133 ~~~~~v~~G~d~~~~~~l~~G-----~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~  196 (198)
                      ++++++|+|+|..+.+ +..|     .+.....+..+.|... .-..++.+||.+..+++.+.-.||.+
T Consensus       247 P~gVrmYTGDDFnYpE-LI~GD~~g~ShALLGIFdaIaPaAs-~Al~aLd~Gd~~~f~~iL~PTvpLsR  313 (396)
T 4dnh_A          247 PKGVRMYTGDDFNYAE-LIAGDEEGHSDALLGIFDAIAPVAS-AALEALGSGRNGEFFELLEPTVPLSR  313 (396)
T ss_dssp             CTTCEEEECCTTTHHH-HHHCCSSCCCEEEESHHHHTHHHHH-HHHHHHHTTCHHHHHHHHTTHHHHHH
T ss_pred             CCcceeecCCCCCcHH-HhcCCCCCccHHHHhhhhhccHHHH-HHHHHHhCCCHHHHHHHhcCcchhhh
Confidence            8899999999987755 4444     4555666666677655 56678899999999998877666643

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=97.63  E-value=0.012  Score=47.82  Aligned_cols=162  Identities=9%  Similarity=-0.001  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCC-EEEEc--CCCCcC---CCCCHHHHHHHHHHHHc
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGAN-AALIL--CPYYFQ---KKMTEDLIYEHFISVAD   80 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad-~v~~~--~P~y~~---~~~~~~~i~~y~~~i~~   80 (198)
                      .++..+.++...+..  +.|+++++++.+.++..+.++.+++.|+| ++-+-  .|..-.   ...+.+.+.+..+.|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~  155 (311)
T 1jub_A           76 FDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT  155 (311)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHH
Confidence            444444444443333  68999999999999999999999999999 88774  355411   00147888899999988


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHH---HHcCCCEEEEeeC-----------------------------------CHH
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVK---LAHHENIRGVKDT-----------------------------------DNI  122 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~---L~~~p~i~giK~s-----------------------------------d~~  122 (198)
                      ++++||++=-.|.     ++.+.+.+   .++--.+.|+.-+                                   +..
T Consensus       156 ~~~~Pv~vKi~~~-----~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~  230 (311)
T 1jub_A          156 FFTKPLGVKLPPY-----FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA  230 (311)
T ss_dssp             TCCSCEEEEECCC-----CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHH
T ss_pred             hcCCCEEEEECCC-----CCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHH
Confidence            8899999865443     34444433   3322234443221                                   012


Q ss_pred             HHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         123 KLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       123 ~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      .+.++. +..++++.|+...+    ......+..|++++..+.+.+.  |.++.++.+.+
T Consensus       231 ~i~~v~-~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l  289 (311)
T 1jub_A          231 NVRAFY-TRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKEL  289 (311)
T ss_dssp             HHHHHH-TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHHH-HhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHH
Confidence            223333 33334666654322    2456667899999999998775  87776665543

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=97.52  E-value=0.00028  Score=56.59  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=85.4

Q ss_pred             CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~   93 (198)
                      ++|+++++.+.+       ++...+.++.+.+.|++.+.+.. .+..++  .+++++..+++.+.   .++|+++...|.
T Consensus        79 ~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l-~~~~~~--~~~~~~~~~~v~~~~~~~g~~viv~~~~~  155 (273)
T 2qjg_A           79 DVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHV-NVGSDE--DWEAYRDLGMIAETCEYWGMPLIAMMYPR  155 (273)
T ss_dssp             CCEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEE-EETSTT--HHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred             CCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEE-ecCCCC--HHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            678888876543       12236778889999999994421 112233  77777777776655   489999876442


Q ss_pred             Ccccc----cCHHHHHHH---H-cC-CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh-h-------HHHHhhcCCC
Q psy9711          94 VTNID----ISVDTLVKL---A-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG-Y-------LLSGLLVGCA  155 (198)
Q Consensus        94 ~tg~~----l~~~~l~~L---~-~~-p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~-~-------~~~~l~~G~~  155 (198)
                        |..    ++++.+.++   + +. ..++++..+ ++..+.++.. ..+-.+....|... .       +...+..|++
T Consensus       156 --G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~~~~~~l~~i~~-~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~  232 (273)
T 2qjg_A          156 --GKHIQNERDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVK-GCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAA  232 (273)
T ss_dssp             --STTCSCTTCHHHHHHHHHHHHHTTCSEEEECCCSSHHHHHHHHH-HCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCS
T ss_pred             --CcccCCCCCHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence              333    466555444   3 22 567777766 8888888763 34445655666542 2       5556689999


Q ss_pred             eEEeccc
Q psy9711         156 GGINALS  162 (198)
Q Consensus       156 G~is~~~  162 (198)
                      |+..+.+
T Consensus       233 gv~vg~~  239 (273)
T 2qjg_A          233 GVAVGRN  239 (273)
T ss_dssp             EEECCHH
T ss_pred             EEEeeHH
Confidence            9987765

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.45  E-value=0.0026  Score=53.36  Aligned_cols=142  Identities=13%  Similarity=0.165  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .+|.++..+.++.+.+..+.|+.++++...    .+.++.+.++|+|.+.+-.+.   ..  ++.+.+..+.+.+..++|
T Consensus        77 ~~s~e~~~~~I~~vk~~~~~pvga~ig~~~----~e~a~~l~eaGad~I~ld~a~---G~--~~~~~~~i~~i~~~~~~~  147 (361)
T 3khj_A           77 NMDMESQVNEVLKVKNSGGLRVGAAIGVNE----IERAKLLVEAGVDVIVLDSAH---GH--SLNIIRTLKEIKSKMNID  147 (361)
T ss_dssp             SSCHHHHHHHHHHHHHTTCCCCEEEECTTC----HHHHHHHHHTTCSEEEECCSC---CS--BHHHHHHHHHHHHHCCCE
T ss_pred             CCCHHHHHHHHHHHHhccCceEEEEeCCCH----HHHHHHHHHcCcCeEEEeCCC---CC--cHHHHHHHHHHHHhcCCc
Confidence            578999999998887665788888887654    788888999999988875443   22  566777788888777999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--h
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--A  143 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d  143 (198)
                      |++-|       ..+++...++.+. .+-+||.+                  ++..+.++.+.....++.|+.  |.  .
T Consensus       148 Vivg~-------v~t~e~A~~l~~a-GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~  219 (361)
T 3khj_A          148 VIVGN-------VVTEEATKELIEN-GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYS  219 (361)
T ss_dssp             EEEEE-------ECSHHHHHHHHHT-TCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSH
T ss_pred             EEEcc-------CCCHHHHHHHHHc-CcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCH
Confidence            99844       3567777777754 23333321                  122222221100011344443  43  2


Q ss_pred             hhHHHHhhcCCCeEEeccccc
Q psy9711         144 GYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       144 ~~~~~~l~~G~~G~is~~~n~  164 (198)
                      ..+..++.+|++|++.|.+.+
T Consensus       220 ~di~kala~GAd~V~vGs~~~  240 (361)
T 3khj_A          220 GDIGKALAVGASSVMIGSILA  240 (361)
T ss_dssp             HHHHHHHHHTCSEEEESTTTT
T ss_pred             HHHHHHHHcCCCEEEEChhhh
Confidence            457778999999999887644

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=97.02  E-value=0.018  Score=46.92  Aligned_cols=145  Identities=12%  Similarity=0.055  Sum_probs=94.9

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCC---EEEEc--CCCCcC---CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGAN---AALIL--CPYYFQ---KKMTEDLIYEHFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad---~v~~~--~P~y~~---~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      +.|+++++++.+.++..+.++.+++.|+|   ++-+-  .|..-.   ...+.+.+.+..+.|.+++++||++=-.|.  
T Consensus        93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~--  170 (314)
T 2e6f_A           93 KKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY--  170 (314)
T ss_dssp             TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC--
T ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC--
Confidence            78999999999999999999999999999   77764  354311   001477888888998888899999855443  


Q ss_pred             ccccCHHHHHHHH---cCCC-EEEEeeC-----------------------------------CHHHHHHHHhhcCCCCe
Q psy9711          96 NIDISVDTLVKLA---HHEN-IRGVKDT-----------------------------------DNIKLANMANQTKDLNF  136 (198)
Q Consensus        96 g~~l~~~~l~~L~---~~p~-i~giK~s-----------------------------------d~~~~~~~~~~~~~~~~  136 (198)
                         ++.+.+.+++   +--. +.++.-+                                   ....+.++. +.. +++
T Consensus       171 ---~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~-~~~-~~i  245 (314)
T 2e6f_A          171 ---FDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY-RRC-PDK  245 (314)
T ss_dssp             ---CCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH-HHC-TTS
T ss_pred             ---CCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH-Hhc-CCC
Confidence               4555554443   2234 6665321                                   012233333 333 456


Q ss_pred             EEEecCh----hhHHHHhhcCCCeEEeccccc--chHHHHHHHHH
Q psy9711         137 SVFAGSA----GYLLSGLLVGCAGGINALSAV--LGGPICELYDL  175 (198)
Q Consensus       137 ~v~~G~d----~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~  175 (198)
                      .|+...+    ......+..|++++..+.+.+  -|.++.++.+.
T Consensus       246 pvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~  290 (314)
T 2e6f_A          246 LVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDE  290 (314)
T ss_dssp             EEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHH
Confidence            6653222    245667789999999998876  47666666543

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=96.94  E-value=0.049  Score=44.04  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=96.8

Q ss_pred             CCCHHHHHH-HHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHh-cCCCEEEEc--CCCCcC----CCCCHHHHHHHHH
Q psy9711           6 KSTEEEKLK-IISTLRQET-KKTIIAGTYCESTRATIDLTQKAAK-AGANAALIL--CPYYFQ----KKMTEDLIYEHFI   76 (198)
Q Consensus         6 ~Lt~~Er~~-l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~-~Gad~v~~~--~P~y~~----~~~~~~~i~~y~~   76 (198)
                      +.+.++..+ .++.+.+.. +.|+++.++..+.++..+.++.+++ .|+|++-+.  .|...+    ...+++.+.+..+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~  157 (311)
T 1ep3_A           78 NPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVK  157 (311)
T ss_dssp             BCCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHH
Confidence            345555433 455554435 8899999998889999999999998 999988663  444211    0012677788888


Q ss_pred             HHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEee-------------------------C---C----HHHH
Q psy9711          77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-------------------------T---D----NIKL  124 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~-------------------------s---d----~~~~  124 (198)
                      .+.+.++.||++--.|..+   =..+...++.+. .+.++..                         +   +    ...+
T Consensus       158 ~v~~~~~~pv~vk~~~~~~---~~~~~a~~l~~~-G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i  233 (311)
T 1ep3_A          158 ACKAVSKVPLYVKLSPNVT---DIVPIAKAVEAA-GADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLI  233 (311)
T ss_dssp             HHHHHCSSCEEEEECSCSS---CSHHHHHHHHHT-TCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHH
T ss_pred             HHHHhcCCCEEEEECCChH---HHHHHHHHHHHc-CCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHH
Confidence            8888889999986655432   123444555443 2223222                         1   1    1223


Q ss_pred             HHHHhhcCCCCeEEEe--cC-h-hhHHHHhhcCCCeEEeccccc-chHHHHHHHH
Q psy9711         125 ANMANQTKDLNFSVFA--GS-A-GYLLSGLLVGCAGGINALSAV-LGGPICELYD  174 (198)
Q Consensus       125 ~~~~~~~~~~~~~v~~--G~-d-~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~  174 (198)
                      .++. +..  ++.|+.  |. + ......+..|++++..+.+.+ -|+.+.++.+
T Consensus       234 ~~i~-~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~  285 (311)
T 1ep3_A          234 HQVA-QDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIID  285 (311)
T ss_dssp             HHHH-TTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHH
T ss_pred             HHHH-Hhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHH
Confidence            3333 222  344442  33 2 346667788999999888754 3555555544

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.80  E-value=0.11  Score=41.72  Aligned_cols=146  Identities=14%  Similarity=0.058  Sum_probs=89.8

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV   94 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~   94 (198)
                      .++.+.+.+++||+..-.-.+..    ++..+..+|||++++.....   +  ++++.++++. +...++-+++==.   
T Consensus       111 ~L~~ir~~v~lPVl~Kdfi~d~~----qi~ea~~~GAD~VlLi~a~L---~--~~~l~~l~~~-a~~lGl~~lvevh---  177 (272)
T 3tsm_A          111 FLTAARQACSLPALRKDFLFDPY----QVYEARSWGADCILIIMASV---D--DDLAKELEDT-AFALGMDALIEVH---  177 (272)
T ss_dssp             HHHHHHHTSSSCEEEESCCCSTH----HHHHHHHTTCSEEEEETTTS---C--HHHHHHHHHH-HHHTTCEEEEEEC---
T ss_pred             HHHHHHHhcCCCEEECCccCCHH----HHHHHHHcCCCEEEEccccc---C--HHHHHHHHHH-HHHcCCeEEEEeC---
Confidence            44555555599998764433333    35567799999999997643   3  6666665555 4456776664221   


Q ss_pred             cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEeccc
Q psy9711          95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus        95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~  162 (198)
                           +.+.+.+..+ -+.++|+=..       |+....++.. ..+++..+.+...    +........|++|++-|.+
T Consensus       178 -----~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~-~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~a  251 (272)
T 3tsm_A          178 -----DEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAK-MAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGES  251 (272)
T ss_dssp             -----SHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHH-HSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHH
T ss_pred             -----CHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHH-hCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHH
Confidence                 3556666555 4689999743       6677777764 3444555554332    2455667889999999987


Q ss_pred             ccchHHHHHHHHHHHcC
Q psy9711         163 AVLGGPICELYDLAKAG  179 (198)
Q Consensus       163 n~~P~~~~~l~~~~~~g  179 (198)
                      -+-++-..+..+.+..|
T Consensus       252 lmr~~d~~~~~~~l~~g  268 (272)
T 3tsm_A          252 LMRQHDVAAATRALLTG  268 (272)
T ss_dssp             HHTSSCHHHHHHHHHHC
T ss_pred             HcCCcCHHHHHHHHHhc
Confidence            55443333333444334

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.78  E-value=0.027  Score=47.20  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PI   84 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~   84 (198)
                      ++|.++..+.++.+.+..+.+|-++++..  .+..+.++.+.++|+|.+.+-...   ..  ++.+.+..+.+.+.. ++
T Consensus        78 ~~s~e~~~~~i~~vk~~~~l~vga~vg~~--~~~~~~~~~lieaGvd~I~idta~---G~--~~~~~~~I~~ik~~~p~v  150 (366)
T 4fo4_A           78 NMSIEQQAAQVHQVKISGGLRVGAAVGAA--PGNEERVKALVEAGVDVLLIDSSH---GH--SEGVLQRIRETRAAYPHL  150 (366)
T ss_dssp             SSCHHHHHHHHHHHHTTTSCCCEEECCSC--TTCHHHHHHHHHTTCSEEEEECSC---TT--SHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHhcCceeEEEEeccC--hhHHHHHHHHHhCCCCEEEEeCCC---CC--CHHHHHHHHHHHHhcCCC
Confidence            48999999999988765455665655532  356778888999999998874332   12  456777888888777 68


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--  142 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--  142 (198)
                      ||+.-|       ..+++...++.+. .+-+||..                  +...+.++.+.....++.|+.  |.  
T Consensus       151 ~Vi~G~-------v~t~e~A~~a~~a-GAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~  222 (366)
T 4fo4_A          151 EIIGGN-------VATAEGARALIEA-GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRF  222 (366)
T ss_dssp             EEEEEE-------ECSHHHHHHHHHH-TCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCS
T ss_pred             ceEeee-------eCCHHHHHHHHHc-CCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCC
Confidence            888744       4577888777753 23333331                  112222222111112345554  44  


Q ss_pred             hhhHHHHhhcCCCeEEeccccc
Q psy9711         143 AGYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       143 d~~~~~~l~~G~~G~is~~~n~  164 (198)
                      ...+..++.+|++|++.|..-+
T Consensus       223 ~~di~kala~GAd~V~vGs~f~  244 (366)
T 4fo4_A          223 SGDISKAIAAGASCVMVGSMFA  244 (366)
T ss_dssp             HHHHHHHHHTTCSEEEESTTTT
T ss_pred             HHHHHHHHHcCCCEEEEChHhh
Confidence            2467788999999998887643

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=96.77  E-value=0.019  Score=45.77  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHhc---CCe--EEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           7 STEEEKLKIISTLRQET---KKT--IIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~p--vi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      .+.+|..+-++.++++.   ++|  |++.+..         ...+++++.++.++++|||++++-.+    ++  .++  
T Consensus       124 ~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~----~~--~~~--  195 (255)
T 2qiw_A          124 REAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL----ST--AEQ--  195 (255)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC----CS--HHH--
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC----CC--HHH--
Confidence            46788888999998885   466  7776653         24799999999999999999998543    33  443  


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                        .++++++.++|+.+--.|......++.+.+.+|
T Consensus       196 --~~~i~~~~~~P~n~~~~~~~~~p~~~~~eL~~l  228 (255)
T 2qiw_A          196 --VERLVDAVSVPVNITAHPVDGHGAGDLATLAGL  228 (255)
T ss_dssp             --HHHHHTTCSSCBEEECBTTTBBTTBCHHHHHHT
T ss_pred             --HHHHHHhCCCCEEEEecCCCCCCCCCHHHHHHc
Confidence              466777778888554334321134677777766

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=96.60  E-value=0.19  Score=39.86  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRAT---IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~---i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +|.+.-.++++.+.+.. ++|+++ .+-.+.-..   -+.++.+.++|+|++++.     ..  ..+++..+.+. ++..
T Consensus        76 ~~~~~~~~~v~~ir~~~~~~Pi~~-m~y~n~v~~~g~~~f~~~~~~aG~dgvii~-----dl--~~ee~~~~~~~-~~~~  146 (262)
T 2ekc_A           76 IRFEDVLELSETLRKEFPDIPFLL-MTYYNPIFRIGLEKFCRLSREKGIDGFIVP-----DL--PPEEAEELKAV-MKKY  146 (262)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSCEEE-ECCHHHHHHHCHHHHHHHHHHTTCCEEECT-----TC--CHHHHHHHHHH-HHHT
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEE-EecCcHHHHhhHHHHHHHHHHcCCCEEEEC-----CC--CHHHHHHHHHH-HHHc
Confidence            34555667788888877 889876 223333222   477888999999998883     12  25666555544 4566


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHc-CCC---------EEEEeeC-C---H-HHHHHHHhhcCCCCeEEEecCh-hhH
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAH-HEN---------IRGVKDT-D---N-IKLANMANQTKDLNFSVFAGSA-GYL  146 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~---------i~giK~s-d---~-~~~~~~~~~~~~~~~~v~~G~d-~~~  146 (198)
                      ++.++..-.|.     -+.+.+.++++ -..         +.|.... +   . ..+.++. +..+-.+.+=.|-. ..-
T Consensus       147 gl~~i~l~~p~-----t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr-~~~~~pv~vG~GI~t~e~  220 (262)
T 2ekc_A          147 VLSFVPLGAPT-----STRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYR-ELCDKPVVVGFGVSKKEH  220 (262)
T ss_dssp             TCEECCEECTT-----CCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHH-HHCCSCEEEESSCCSHHH
T ss_pred             CCcEEEEeCCC-----CCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHH-hhcCCCEEEeCCCCCHHH
Confidence            76654433443     34566677663 232         2233322 2   1 2333333 33333344433433 233


Q ss_pred             HHHhhcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711         147 LSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL  191 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~  191 (198)
                      ...+..|+||++.|.+     +...    ..+++.++++++.+.+
T Consensus       221 ~~~~~~gADgvIVGSa-----i~~~----~~~~~~~~~~~~~~~~  256 (262)
T 2ekc_A          221 AREIGSFADGVVVGSA-----LVKL----AGQKKIEDLGNLVKEL  256 (262)
T ss_dssp             HHHHHTTSSEEEECHH-----HHHH----HHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEECHH-----HHhh----hhhhhHHHHHHHHHHH
Confidence            3447889999999975     2222    2234556666555544

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=96.59  E-value=0.11  Score=43.21  Aligned_cols=163  Identities=12%  Similarity=0.054  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHH---hcCCCEEEEc--CCCCc---CCCCCHHHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAA---KAGANAALIL--CPYYF---QKKMTEDLIYEHFISV   78 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~---~~Gad~v~~~--~P~y~---~~~~~~~~i~~y~~~i   78 (198)
                      ...+...+-++...+..+.||++++.+.+.++-++.++.++   +.|+|++-+-  .|..-   ....+++.+.+..+.+
T Consensus       109 ~G~~~~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av  188 (354)
T 4ef8_A          109 NGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAV  188 (354)
T ss_dssp             CCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHH
Confidence            34444444443222111789999998889999999999988   6799998764  44421   1111378899999999


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHH----cCCCEEEEe-----------e-----------------C-------
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HHENIRGVK-----------D-----------------T-------  119 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~p~i~giK-----------~-----------------s-------  119 (198)
                      .+++++||.+=-.|..     +.+.+.+++    +.+.+.||-           +                 |       
T Consensus       189 ~~~~~~PV~vKi~p~~-----d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~  263 (354)
T 4ef8_A          189 SEVYPHSFGVKMPPYF-----DFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPT  263 (354)
T ss_dssp             HHHCCSCEEEEECCCC-----SHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHH
T ss_pred             HHhhCCCeEEEecCCC-----CHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchH
Confidence            9999999999887753     444454444    333244442           1                 1       


Q ss_pred             CHHHHHHHHhhcCCCCeEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         120 DNIKLANMANQTKDLNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       120 d~~~~~~~~~~~~~~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      ++..+.++. +. .+++.|+. | ..  ......+..|++++..+.+.+.  |.++.++.+.+
T Consensus       264 a~~~i~~v~-~~-~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l  324 (354)
T 4ef8_A          264 ALANINAFY-RR-CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSEL  324 (354)
T ss_dssp             HHHHHHHHH-HH-CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHH-Hh-CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHH
Confidence            112233333 23 34555543 3 21  2456677899999999988664  66666665544

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=96.51  E-value=0.084  Score=42.90  Aligned_cols=162  Identities=9%  Similarity=0.041  Sum_probs=92.3

Q ss_pred             CCeEEEeCCCCcH-------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCEST-------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~-------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~   93 (198)
                      ++|+|+.+++.+.       +....-++.|.+.|||++.+.-- +....  +.+.++-++++.+.+   ++|+++-. |.
T Consensus       105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~-~Gs~~--~~~~l~~i~~v~~~a~~~GlpvIie~-~~  180 (295)
T 3glc_A          105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVY-IGSEY--EHQSIKNIIQLVDAGMKVGMPTMAVT-GV  180 (295)
T ss_dssp             CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEEC-TTSTT--HHHHHHHHHHHHHHHHTTTCCEEEEE-CC
T ss_pred             CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEE-CCCCc--HHHHHHHHHHHHHHHHHcCCEEEEEC-CC
Confidence            8899998865441       11123467778999999888522 12233  677777666666554   79999843 32


Q ss_pred             CcccccCHHHHH---HHH-cC-CCEEEEeeCCHHHHHHHHhhcCCCCeEEEecCh--h-----hHHHHhhcCCCeEEecc
Q psy9711          94 VTNIDISVDTLV---KLA-HH-ENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA--G-----YLLSGLLVGCAGGINAL  161 (198)
Q Consensus        94 ~tg~~l~~~~l~---~L~-~~-p~i~giK~sd~~~~~~~~~~~~~~~~~v~~G~d--~-----~~~~~l~~G~~G~is~~  161 (198)
                      ......+++.+.   +++ +. ..++..+.+ ...+.++.. ..+-.+.+..|..  .     ++..++..|++|++.|-
T Consensus       181 G~~~~~d~e~i~~aariA~elGAD~VKt~~t-~e~~~~vv~-~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGR  258 (295)
T 3glc_A          181 GKDMVRDQRYFSLATRIAAEMGAQIIKTYYV-EKGFERIVA-GCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGR  258 (295)
T ss_dssp             ----CCSHHHHHHHHHHHHHTTCSEEEEECC-TTTHHHHHH-TCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESH
T ss_pred             CCccCCCHHHHHHHHHHHHHhCCCEEEeCCC-HHHHHHHHH-hCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHH
Confidence            112234566544   666 44 466666655 223445542 2333443334422  1     34567789999999887


Q ss_pred             ccc---chHHHH-HHHHHHHcC-CHHHHHHHHHHh
Q psy9711         162 SAV---LGGPIC-ELYDLAKAG-KWEEAMKLQHRL  191 (198)
Q Consensus       162 ~n~---~P~~~~-~l~~~~~~g-d~~~A~~l~~~~  191 (198)
                      +-+   -|..+. ++.+.+.++ ..++|.++++.+
T Consensus       259 nI~q~~dp~~~~~al~~ivh~~~s~~eA~~~~~~~  293 (295)
T 3glc_A          259 NIFQSDHPVAMMKAVQAVVHHNETADRAYELYLSE  293 (295)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHTC
T ss_pred             HHhcCcCHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Confidence            544   344433 333344443 578898887654

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=96.49  E-value=0.14  Score=41.48  Aligned_cols=159  Identities=11%  Similarity=0.071  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-C----CcCCC---CCHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP-Y----YFQKK---MTEDLIYEHFIS   77 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P-~----y~~~~---~~~~~i~~y~~~   77 (198)
                      .+|..++..-++...+..+.-++.++-+..+      ++.++++|+|++.+..- .    +..|+   .|-+++..|-+.
T Consensus         3 ~m~~~~~~~~lr~l~~~~~~i~~~~a~D~~s------A~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~   76 (287)
T 3b8i_A            3 RASHHELRAMFRALLDSSRCYHTASVFDPMS------ARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATR   76 (287)
T ss_dssp             CCCHHHHHHHHHHHHHSSCCEECEECCSHHH------HHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHhCCCcEEEecCCCHHH------HHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence            4677777777777765434445667776543      55666789999998753 1    22222   469999999999


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHH----HHcCCCEEEEeeC--C------------------HHHHHHHHhhcCC
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVK----LAHHENIRGVKDT--D------------------NIKLANMANQTKD  133 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~----L~~~p~i~giK~s--d------------------~~~~~~~~~~~~~  133 (198)
                      |++.+++| ++-|.|.  |+. +++...+    +.+ -.+.|+|.+  .                  ..+++........
T Consensus        77 I~r~~~~P-viaD~d~--Gyg-~~~~~~~~v~~l~~-aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~  151 (287)
T 3b8i_A           77 IGRVARLP-VIADADH--GYG-NALNVMRTVVELER-AGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVD  151 (287)
T ss_dssp             HHTTCSSC-EEEECTT--CSS-SHHHHHHHHHHHHH-HTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCS
T ss_pred             HHhcCCCC-EEEECCC--CCC-CHHHHHHHHHHHHH-hCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCC
Confidence            99999999 6889984  554 6554443    443 689999987  2                  1344444433335


Q ss_pred             CCeEEEecChh-------hHH---HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711         134 LNFSVFAGSAG-------YLL---SGLLVGCAGGINALSAVLGGPICELYDLA  176 (198)
Q Consensus       134 ~~~~v~~G~d~-------~~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~  176 (198)
                      ++|.|..=.|.       .+-   ....+|+++++.-.- --++.+.++.+++
T Consensus       152 ~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~-~~~~~~~~i~~~~  203 (287)
T 3b8i_A          152 PALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGV-RDFAHLEAIAEHL  203 (287)
T ss_dssp             TTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC-CSHHHHHHHHTTC
T ss_pred             CCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC-CCHHHHHHHHHhC
Confidence            67877653332       221   224579998875421 1235666665543

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=96.44  E-value=0.092  Score=43.11  Aligned_cols=156  Identities=11%  Similarity=0.078  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhc-CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEc--CCCCc--CCCCCHHHHHHHHHHHH
Q psy9711          12 KLKIISTLRQET-KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALIL--CPYYF--QKKMTEDLIYEHFISVA   79 (198)
Q Consensus        12 r~~l~~~~~~~~-~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~--~P~y~--~~~~~~~~i~~y~~~i~   79 (198)
                      ..++++.+.+.. +.|+++.++.+.       .++-.+.++.+.+ |+|++-+-  .|...  ..-.+.+.+.+..+.|-
T Consensus       120 ~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr  198 (336)
T 1f76_A          120 VDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIK  198 (336)
T ss_dssp             HHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence            345555554433 679999988766       6777888888876 99998664  45421  00012455556666666


Q ss_pred             ccC---------CCCEEEEeCCCCcccccCHHHHHHH---HcCCCEEEEeeC-C------------------------H-
Q psy9711          80 DNS---------PIPVIIYNNTFVTNIDISVDTLVKL---AHHENIRGVKDT-D------------------------N-  121 (198)
Q Consensus        80 ~~~---------~~pi~lYn~P~~tg~~l~~~~l~~L---~~~p~i~giK~s-d------------------------~-  121 (198)
                      +.+         ++||++=-.|     +++.+.+.++   ++--.+.||..+ .                        . 
T Consensus       199 ~~~~~~~~~~g~~~Pv~vKi~~-----~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~  273 (336)
T 1f76_A          199 NKQNDLQAMHHKYVPIAVKIAP-----DLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQL  273 (336)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCS-----CCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHH
T ss_pred             HHHHhhhhcccccCceEEEecC-----CCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHH
Confidence            555         7999985433     2454444333   322345555543 1                        0 


Q ss_pred             ---HHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHH
Q psy9711         122 ---IKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD  174 (198)
Q Consensus       122 ---~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~  174 (198)
                         ..+.++. +..++++.|+.  |..  ......+..|++++..+.+.+.  |.++.++.+
T Consensus       274 ~~~~~i~~i~-~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~~~i~~  334 (336)
T 1f76_A          274 KSTEIIRRLS-LELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT  334 (336)
T ss_dssp             HHHHHHHHHH-HHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHHHHHHh
Confidence               1222332 23333455543  222  3466778899999999988765  888776644

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=96.43  E-value=0.17  Score=40.53  Aligned_cols=141  Identities=20%  Similarity=0.226  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHH--HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~--~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +|.+.-.++++.+.+.. ++|++.=...+...  -.-+.++.++++|+|++++.-     .  ..++ .+-|...++..+
T Consensus        79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD-----l--p~ee-~~~~~~~~~~~g  150 (271)
T 3nav_A           79 TTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD-----V--PTNE-SQPFVAAAEKFG  150 (271)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT-----S--CGGG-CHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC-----C--CHHH-HHHHHHHHHHcC
Confidence            45566677888887763 88986533332222  225689999999999999841     1  1344 344666677778


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYL  146 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~  146 (198)
                      +..+..=.|.     -+.+.++++++ -+.++         |.+..   +...+.+.+++..  +..+..|.+    +..
T Consensus       151 l~~I~lvap~-----t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~  223 (271)
T 3nav_A          151 IQPIFIAPPT-----ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQV  223 (271)
T ss_dssp             CEEEEEECTT-----CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHH
T ss_pred             CeEEEEECCC-----CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHH
Confidence            8765554553     24577777774 33333         33332   2222222232333  344554543    234


Q ss_pred             HHHhhcCCCeEEeccc
Q psy9711         147 LSGLLVGCAGGINALS  162 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~  162 (198)
                      ...+..|+||+|.|.+
T Consensus       224 ~~~~~~gADgvIVGSA  239 (271)
T 3nav_A          224 KQAIEAGAAGAISGSA  239 (271)
T ss_dssp             HHHHHTTCSEEEESHH
T ss_pred             HHHHHcCCCEEEECHH
Confidence            4478899999999975

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=96.40  E-value=0.064  Score=43.44  Aligned_cols=90  Identities=22%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ..+.+|..+-++.++++.   +..|++=+  .....+++++.++.++++|||++++-.+    ++  .++    .+++++
T Consensus       132 l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~----~~--~~~----~~~i~~  201 (287)
T 3b8i_A          132 LICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGV----RD--FAH----LEAIAE  201 (287)
T ss_dssp             BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC----CS--HHH----HHHHHT
T ss_pred             ccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC----CC--HHH----HHHHHH
Confidence            467889999999999986   45555543  2334689999999999999999998643    33  443    466777


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      +.++|+++-  +......++.+.+.++
T Consensus       202 ~~~~P~ii~--~~g~~~~~~~~eL~~l  226 (287)
T 3b8i_A          202 HLHIPLMLV--TYGNPQLRDDARLARL  226 (287)
T ss_dssp             TCCSCEEEE--CTTCGGGCCHHHHHHT
T ss_pred             hCCCCEEEe--CCCCCCCCCHHHHHHc
Confidence            888999942  2111234677766666

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=96.39  E-value=0.061  Score=45.86  Aligned_cols=98  Identities=14%  Similarity=0.086  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711           7 STEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKAG   50 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~G   50 (198)
                      .+.+|-.+=++.++++.     ..-|++=+-+                               ..++++|++++.+.+ |
T Consensus       205 v~~~e~~~rI~Aa~~A~~~~~~d~~IiARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-G  283 (435)
T 3lg3_A          205 VPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-Y  283 (435)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-G
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-c
Confidence            46777777777776654     3445555543                               568999999999999 9


Q ss_pred             CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHH----HHHHcC
Q psy9711          51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTL----VKLAHH  110 (198)
Q Consensus        51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l----~~L~~~  110 (198)
                      ||.+.+-++.   ++  .+++.++-+.|....+..++.||. |..+ ...++.+.+    .+|++.
T Consensus       284 AD~if~E~~~---~~--~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~l  344 (435)
T 3lg3_A          284 ADLVWCETST---PD--LALAKRFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAM  344 (435)
T ss_dssp             CSEEEECCSS---CC--HHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHT
T ss_pred             CCEEEecCCC---CC--HHHHHHHHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHc
Confidence            9999996653   55  999999999998778899999986 5432 224776665    455554

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=96.37  E-value=0.34  Score=40.12  Aligned_cols=164  Identities=10%  Similarity=-0.013  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCC-EEEEc--CCCCc---CCCCCHHHHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGAN-AALIL--CPYYF---QKKMTEDLIYEHFISVA   79 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad-~v~~~--~P~y~---~~~~~~~~i~~y~~~i~   79 (198)
                      ...+...+-++...+.. +.||++++++.+.++-++.++.+++.|++ ++-+-  .|.--   ....+++.+.+..+.+.
T Consensus       110 ~G~~~~~~~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~  189 (345)
T 3oix_A          110 LGINYYLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVF  189 (345)
T ss_dssp             SCHHHHHHHHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHH
Confidence            34455555444433333 89999999999999999999999999987 65543  44421   11014788999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHc---CCCEEEEe--------------------------eC---C----HHH
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH---HENIRGVK--------------------------DT---D----NIK  123 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~giK--------------------------~s---d----~~~  123 (198)
                      +++++||.+=-.|.     ++.+.+.++++   ...|.++-                          .|   .    +..
T Consensus       190 ~~~~~PV~vKi~p~-----~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~  264 (345)
T 3oix_A          190 TYFTKPLGIKLPPY-----FDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALAN  264 (345)
T ss_dssp             TTCCSCEEEEECCC-----CCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHH
T ss_pred             HHhCCCeEEEECCC-----CCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHH
Confidence            98999999987774     46666766652   23343220                          11   1    122


Q ss_pred             HHHHHhhcCCCCeEEEe-c-Ch--hhHHHHhhcCCCeEEeccccc--chHHHHHHHHHH
Q psy9711         124 LANMANQTKDLNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAV--LGGPICELYDLA  176 (198)
Q Consensus       124 ~~~~~~~~~~~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~~  176 (198)
                      +.++. +..++++.|+. | ..  ......+..|++++..+.+.+  -|.++.++.+.+
T Consensus       265 v~~i~-~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L  322 (345)
T 3oix_A          265 VHAFY-KRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKEL  322 (345)
T ss_dssp             HHHHH-TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred             HHHHH-HHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHH
Confidence            33333 34444666653 2 22  245667789999999888722  376666665544

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=96.36  E-value=0.089  Score=44.34  Aligned_cols=59  Identities=20%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             eEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC------CCCcC-CCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          26 TIIAG-TYCESTRATIDLTQKAAKAGANAALILC------PYYFQ-KKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        26 pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~------P~y~~-~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ++|+| ++-++.+.+.++++.++++|++++-...      |+.++ ++  . +-...++++++..++|++
T Consensus       144 ~~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~--~-egl~~L~~~~~~~Gl~~~  210 (385)
T 3nvt_A          144 VFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLG--L-EGLKILKRVSDEYGLGVI  210 (385)
T ss_dssp             EEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT--H-HHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCC--H-HHHHHHHHHHHHcCCEEE
Confidence            56666 5667899999999999999999887653      44232 33  4 445677777877777776

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=96.34  E-value=0.088  Score=44.94  Aligned_cols=99  Identities=12%  Similarity=0.064  Sum_probs=71.0

Q ss_pred             CCCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhc
Q psy9711           6 KSTEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKA   49 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~   49 (198)
                      ..+.+|..+=++.++++.     ..-|++=+-+                               ..++++|++++.+.+ 
T Consensus       204 lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-  282 (439)
T 3i4e_A          204 LVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-  282 (439)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-
T ss_pred             ecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-
Confidence            356778777777777664     3445554432                               458999999999998 


Q ss_pred             CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHH----HHHHcC
Q psy9711          50 GANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTL----VKLAHH  110 (198)
Q Consensus        50 Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l----~~L~~~  110 (198)
                      |||.+.+-++.   ++  .+++.++-+.+....+.+++.||. |..+ ...++.+.+    .+|++.
T Consensus       283 GAD~if~E~~~---~~--~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~~~~~~~~~~~f~~eL~~l  344 (439)
T 3i4e_A          283 YADLIWCETGK---PD--LEYAKKFAEAIHKQFPGKLLSYNCSPSFNWKKNLDDATIAKFQKELGAM  344 (439)
T ss_dssp             TCSEEEECCSS---CC--HHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHTHHHHHHHH
T ss_pred             hCCEEEecCCC---CC--HHHHHHHHHHhcccCCceEEeeCCCCCCcCcccCCHHHHHHHHHHHHHc
Confidence            99999996653   45  999999999998778999999995 6432 123666553    356554

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=96.32  E-value=0.042  Score=44.57  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~   77 (198)
                      ..+.+|..+-++.++++.   +..|++=+-+    ...+++++.++.++++|||++++-. +    ++  .+++    ++
T Consensus       128 l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----~~--~~~~----~~  197 (290)
T 2hjp_A          128 LVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----KT--PDEI----LA  197 (290)
T ss_dssp             BCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCC----SS--SHHH----HH
T ss_pred             ccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCC----CC--HHHH----HH
Confidence            345667788888888886   4556554432    2379999999999999999999865 3    33  5555    55


Q ss_pred             HHccCC--CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          78 VADNSP--IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        78 i~~~~~--~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      ++++.+  +|++. |..  .+..++.   .+|.+..++.-+-..
T Consensus       198 i~~~~~~~vP~i~-n~~--~~~~~~~---~eL~~lG~v~~v~~~  235 (290)
T 2hjp_A          198 FVKSWPGKVPLVL-VPT--AYPQLTE---ADIAALSKVGIVIYG  235 (290)
T ss_dssp             HHHHCCCSSCEEE-CGG--GCTTSCH---HHHHTCTTEEEEEEC
T ss_pred             HHHHcCCCCCEEE-ecc--CCCCCCH---HHHHhcCCeeEEEec
Confidence            666666  99887 532  2334554   566666556666665

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=96.27  E-value=0.083  Score=43.15  Aligned_cols=92  Identities=18%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             CCCHHHHHHHHHHHHHhc-----CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET-----KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ..+.+|..+-++.++++.     +.-|++=+-+   ...+++|++++.+.++|||++++-.+    .+  .+++.++-+.
T Consensus       139 l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~----~~--~~~~~~i~~~  212 (307)
T 3lye_A          139 VVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGF----RS--KEQAAAAVAA  212 (307)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC----SC--HHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC----CC--HHHHHHHHHH
Confidence            356777666677766654     3455554433   34689999999999999999988643    33  7766665555


Q ss_pred             HHccCCCCEEEEeC-CCCcccccCHHHHHHH
Q psy9711          78 VADNSPIPVIIYNN-TFVTNIDISVDTLVKL  107 (198)
Q Consensus        78 i~~~~~~pi~lYn~-P~~tg~~l~~~~l~~L  107 (198)
                      +.   ++|+++ |. +......++.+.+.+|
T Consensus       213 ~~---~~Pv~~-n~~~~g~~p~~t~~eL~~l  239 (307)
T 3lye_A          213 LA---PWPLLL-NSVENGHSPLITVEEAKAM  239 (307)
T ss_dssp             HT---TSCBEE-EEETTSSSCCCCHHHHHHH
T ss_pred             cc---CCceeE-EeecCCCCCCCCHHHHHHc
Confidence            53   478744 42 3211224677666666

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=96.27  E-value=0.32  Score=38.67  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH-----------------HHHHHHHHHHHcc-CCCCEEE--Ee
Q psy9711          31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTE-----------------DLIYEHFISVADN-SPIPVII--YN   90 (198)
Q Consensus        31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~-----------------~~i~~y~~~i~~~-~~~pi~l--Yn   90 (198)
                      .|..+.+++++.++..++.|+|.+-+--|+..+. ++.                 +...+..++|.+. +++|+++  |.
T Consensus        25 ~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~-~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~  103 (268)
T 1qop_A           25 LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPL-ADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYA  103 (268)
T ss_dssp             TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCT-TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCcc-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcc
Confidence            5777889999999999999999999999985321 122                 2234567777777 7899966  65


Q ss_pred             CC
Q psy9711          91 NT   92 (198)
Q Consensus        91 ~P   92 (198)
                      +|
T Consensus       104 n~  105 (268)
T 1qop_A          104 NL  105 (268)
T ss_dssp             HH
T ss_pred             cH
Confidence            55

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=96.27  E-value=0.066  Score=43.96  Aligned_cols=91  Identities=18%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCCC---cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYCE---STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~---~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..+.+|..+-++.++++.   +..|++=+-..   ..+++|+.++.++++|||++++-.+    ++  .+++    ++++
T Consensus       152 L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~----~~--~e~~----~~i~  221 (318)
T 1zlp_A          152 VVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAP----AN--VDEL----KEVS  221 (318)
T ss_dssp             BCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC----CS--HHHH----HHHH
T ss_pred             cCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC----CC--HHHH----HHHH
Confidence            356778888888888886   44555544332   2379999999999999999998654    33  4544    5566


Q ss_pred             ccCCCCEEEEeC-CCCcccccCHHHHHHH
Q psy9711          80 DNSPIPVIIYNN-TFVTNIDISVDTLVKL  107 (198)
Q Consensus        80 ~~~~~pi~lYn~-P~~tg~~l~~~~l~~L  107 (198)
                      ++.++|++. |. +......++.+.+.+|
T Consensus       222 ~~l~~P~la-n~~~~g~~~~~~~~eL~~l  249 (318)
T 1zlp_A          222 AKTKGLRIA-NMIEGGKTPLHTPEEFKEM  249 (318)
T ss_dssp             HHSCSEEEE-EECTTSSSCCCCHHHHHHH
T ss_pred             HhcCCCEEE-EeccCCCCCCCCHHHHHHc
Confidence            667799876 53 2111135777766666

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=96.19  E-value=0.11  Score=42.35  Aligned_cols=141  Identities=9%  Similarity=0.040  Sum_probs=88.7

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-----CCCcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-----PYYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-----P~y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      +.-++.++-+..+      ++.++++|+|++.+..     -....|+   .|-+++..|-+.|++.+++| ++-|.|.  
T Consensus        22 ~~i~~~~a~D~~s------A~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~P-viaD~d~--   92 (298)
T 3eoo_A           22 QPLQVVGAITAYA------AKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLP-LLVDIDT--   92 (298)
T ss_dssp             SSEEEEECSSHHH------HHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSC-EEEECTT--
T ss_pred             CcEEEecCCCHHH------HHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCe-EEEECCC--
Confidence            4445667776544      3445667999999975     2222232   35899999999999999999 6778885  


Q ss_pred             ccccCHHHHHH----HHcCCCEEEEeeC--C-------------------HHHHHHHHhhcCCCCeEEEecChhhHHH--
Q psy9711          96 NIDISVDTLVK----LAHHENIRGVKDT--D-------------------NIKLANMANQTKDLNFSVFAGSAGYLLS--  148 (198)
Q Consensus        96 g~~l~~~~l~~----L~~~p~i~giK~s--d-------------------~~~~~~~~~~~~~~~~~v~~G~d~~~~~--  148 (198)
                      |+. +++.+.+    +.+ -.+.|+|.+  .                   ..+++.......+++|.|..=.|.....  
T Consensus        93 Gyg-~~~~v~~~v~~l~~-aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gl  170 (298)
T 3eoo_A           93 GWG-GAFNIARTIRSFIK-AGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGI  170 (298)
T ss_dssp             CSS-SHHHHHHHHHHHHH-TTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHH-hCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCH
Confidence            543 5544433    333 578899887  1                   1223322322345788887655543222  


Q ss_pred             ---------HhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711         149 ---------GLLVGCAGGINALSAVLGGPICELYDLA  176 (198)
Q Consensus       149 ---------~l~~G~~G~is~~~n~~P~~~~~l~~~~  176 (198)
                               ...+|+|++..-.. --++.+.++.+++
T Consensus       171 deai~Ra~ay~~AGAD~if~~~~-~~~ee~~~~~~~~  206 (298)
T 3eoo_A          171 DAAIERAIAYVEAGADMIFPEAM-KTLDDYRRFKEAV  206 (298)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCC-CSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHhcCCCEEEeCCC-CCHHHHHHHHHHc
Confidence                     24679999875432 2467777777766

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=96.18  E-value=0.11  Score=42.38  Aligned_cols=91  Identities=15%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHHhc-----CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET-----KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ..+.+|..+=++.++++.     ++-|++=+-+   ...+++|++++.+.++|||++++-.+    .+  .+++.    +
T Consensus       131 l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~----~~--~~ei~----~  200 (302)
T 3fa4_A          131 LVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGI----TS--REMAR----Q  200 (302)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTC----CC--HHHHH----H
T ss_pred             ecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCC----CC--HHHHH----H
Confidence            356788777777777764     4556665533   35799999999999999999998654    23  66654    4


Q ss_pred             HHccC-CCCEEEEe-CCCCcccccCHHHHHHH
Q psy9711          78 VADNS-PIPVIIYN-NTFVTNIDISVDTLVKL  107 (198)
Q Consensus        78 i~~~~-~~pi~lYn-~P~~tg~~l~~~~l~~L  107 (198)
                      ++++. +.|+++ | .+......++.+.+.+|
T Consensus       201 ~~~~~~~~Pl~~-n~~~~g~~p~~~~~eL~~l  231 (302)
T 3fa4_A          201 VIQDLAGWPLLL-NMVEHGATPSISAAEAKEM  231 (302)
T ss_dssp             HHHHTTTSCEEE-ECCTTSSSCCCCHHHHHHH
T ss_pred             HHHHhcCCceeE-EEecCCCCCCCCHHHHHHc
Confidence            55555 488855 4 33211224677777777

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=96.11  E-value=0.08  Score=43.73  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=69.1

Q ss_pred             HHHHHhcCCCEEEEcCCCCcCCCCCHH----HHHHHHHHHHccC---CCCEEE--EeCCCCcccccC-------HHHHHH
Q psy9711          43 TQKAAKAGANAALILCPYYFQKKMTED----LIYEHFISVADNS---PIPVII--YNNTFVTNIDIS-------VDTLVK  106 (198)
Q Consensus        43 a~~a~~~Gad~v~~~~P~y~~~~~~~~----~i~~y~~~i~~~~---~~pi~l--Yn~P~~tg~~l~-------~~~l~~  106 (198)
                      .+++.++|||+|-++-.+  .+. +++    +..+++++|.+.+   ++|+++  +-.|..-+...+       |+.+..
T Consensus       116 ve~a~~~GADAVk~lv~~--g~d-~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~  192 (332)
T 3iv3_A          116 IKRLKEAGADAVKFLLYY--DVD-GDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVND  192 (332)
T ss_dssp             HHHHHHTTCSEEEEEEEE--CTT-SCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHH
T ss_pred             HHHHHHcCCCEEEEEEEc--CCC-chHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHH
Confidence            688899999999998543  332 132    4667777777665   899998  554532222333       444544


Q ss_pred             HHc-C--C--CEEEEeeC---CHH-------------------HHHHHHhhcCCCCeEEEecCh--h----hHHHHhhcC
Q psy9711         107 LAH-H--E--NIRGVKDT---DNI-------------------KLANMANQTKDLNFSVFAGSA--G----YLLSGLLVG  153 (198)
Q Consensus       107 L~~-~--p--~i~giK~s---d~~-------------------~~~~~~~~~~~~~~~v~~G~d--~----~~~~~l~~G  153 (198)
                      .++ .  +  ..--+|..   |+.                   .+.++. ...+-.+.+++|.-  .    ++-.++..|
T Consensus       193 a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~-~a~~~P~v~lsgG~~~~~fl~~v~~A~~aG  271 (332)
T 3iv3_A          193 AMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQE-ASTDLPYIYLSAGVSAELFQETLVFAHKAG  271 (332)
T ss_dssp             HHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHH-HTCSSCEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            442 1  2  44444544   652                   355555 34445666666532  2    233567899


Q ss_pred             C--CeEEeccc
Q psy9711         154 C--AGGINALS  162 (198)
Q Consensus       154 ~--~G~is~~~  162 (198)
                      +  .|+..|=+
T Consensus       272 a~f~Gv~~GRn  282 (332)
T 3iv3_A          272 AKFNGVLCGRA  282 (332)
T ss_dssp             CCCCEEEECHH
T ss_pred             CCcceEEeeHH
Confidence            9  99998864

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=96.10  E-value=0.087  Score=42.86  Aligned_cols=91  Identities=20%  Similarity=0.131  Sum_probs=60.0

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..+.+|..+-++.++++.   +.-|++=+-+   ...+++|++++.+.++|||++++-.+    .+  .+++.++-+   
T Consensus       134 l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~----~~--~ee~~~~~~---  204 (298)
T 3eoo_A          134 CVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM----KT--LDDYRRFKE---  204 (298)
T ss_dssp             BCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC----CS--HHHHHHHHH---
T ss_pred             ecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC----CC--HHHHHHHHH---
Confidence            357788888888888886   4455555533   24688999999999999999998654    23  766655444   


Q ss_pred             ccCCCCEEEEeC-CCCcccccCHHHHHHH
Q psy9711          80 DNSPIPVIIYNN-TFVTNIDISVDTLVKL  107 (198)
Q Consensus        80 ~~~~~pi~lYn~-P~~tg~~l~~~~l~~L  107 (198)
                       +++.|+++ |. .......++.+.+.+|
T Consensus       205 -~~~~Pl~~-n~~~~g~tp~~~~~eL~~l  231 (298)
T 3eoo_A          205 -AVKVPILA-NLTEFGSTPLFTLDELKGA  231 (298)
T ss_dssp             -HHCSCBEE-ECCTTSSSCCCCHHHHHHT
T ss_pred             -HcCCCeEE-EeccCCCCCCCCHHHHHHc
Confidence             44688865 32 1111113565555555

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=95.98  E-value=0.073  Score=42.80  Aligned_cols=88  Identities=19%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCe--EEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKT--IIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL   70 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~p--vi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~   70 (198)
                      ..+.+|..+-++.++++.   ++|  |++=+-.          ...+++++.++.++++|||++++-.+    ++  .++
T Consensus       122 l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~----~~--~~~  195 (275)
T 2ze3_A          122 LYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA----LQ--SQD  195 (275)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC----CC--HHH
T ss_pred             cCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC----CC--HHH
Confidence            357788888899998884   455  4443333          14799999999999999999988653    43  554


Q ss_pred             HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          71 IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        71 i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      +    ++++++.++|+. ++.   +...++.+.+.++
T Consensus       196 ~----~~i~~~~~~P~n-~~~---~~~~~~~~eL~~l  224 (275)
T 2ze3_A          196 I----RALADALRVPLN-VMA---FPGSPVPRALLDA  224 (275)
T ss_dssp             H----HHHHHHCSSCEE-EEC---CTTSCCHHHHHHT
T ss_pred             H----HHHHHhcCCCEE-Eec---CCCCCCHHHHHHc
Confidence            4    556666779973 442   1124565555544

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=95.94  E-value=0.16  Score=43.30  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             CCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711           7 STEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKAG   50 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~G   50 (198)
                      .+.+|..+=++.++++.     ..-|++=+-+                               ..++++|++++.+.+ |
T Consensus       201 vp~~e~v~rI~AAr~A~~~~g~d~vIiARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-g  279 (429)
T 1f8m_A          201 IPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-F  279 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-G
T ss_pred             eCHHHHHHHHHHHHHHHHhcCCCEEEEEEechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHHHHHh-c
Confidence            56777777777777665     3445554433                               468999999999999 9


Q ss_pred             CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHHHH
Q psy9711          51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTLVK  106 (198)
Q Consensus        51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l~~  106 (198)
                      ||.+.+-++.   ++  .+++.++-+.+-...+..++.||. |..+ ...++++.+++
T Consensus       280 AD~if~e~~~---~~--~eei~~f~~~v~~~~P~~~La~n~sPsf~w~~~~~~~~~~~  332 (429)
T 1f8m_A          280 ADLIWMETGT---PD--LEAARQFSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAK  332 (429)
T ss_dssp             CSEEEECCSS---CC--HHHHHHHHHHHHTTCTTCEEEEECCTTSCHHHHCCHHHHHH
T ss_pred             CCEEEeCCCC---CC--HHHHHHHHHHhcccCCCceeecCCCCCCCcccccchhhHhH
Confidence            9999985432   44  889988888886545665788986 5432 22366666544

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=95.86  E-value=0.071  Score=43.05  Aligned_cols=82  Identities=13%  Similarity=0.038  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEE--EeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTII--AGT-------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE   73 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi--~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~   73 (198)
                      .+|.+|-.+.++.+++.+   +++|.  ++.       +..+.++.++.++.+.+.|+|.+.+....= ..  +++++.+
T Consensus       112 ~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G-~~--~P~~~~~  188 (295)
T 1ydn_A          112 NCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIG-RG--TPDTVAA  188 (295)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTS-CC--CHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCC-Cc--CHHHHHH
Confidence            456666666666666655   55554  221       123567777777777777777776664322 22  3777777


Q ss_pred             HHHHHHccCC-CCEEEEe
Q psy9711          74 HFISVADNSP-IPVIIYN   90 (198)
Q Consensus        74 y~~~i~~~~~-~pi~lYn   90 (198)
                      .++.|.+.++ +|+.++-
T Consensus       189 lv~~l~~~~~~~~l~~H~  206 (295)
T 1ydn_A          189 MLDAVLAIAPAHSLAGHY  206 (295)
T ss_dssp             HHHHHHTTSCGGGEEEEE
T ss_pred             HHHHHHHhCCCCeEEEEE
Confidence            7777777765 6776653

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=95.82  E-value=0.07  Score=43.34  Aligned_cols=81  Identities=7%  Similarity=-0.085  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH   74 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y   74 (198)
                      +|.+|-.+.++.+++.+   ++.|-+.+         +..+.+.+++.++.+.+.|+|.+.+..-. ...  +|.++.+.
T Consensus       117 ~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~-G~~--~P~~~~~l  193 (302)
T 2ftp_A          117 CSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTI-GVG--TAGATRRL  193 (302)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESS-SCC--CHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-CCc--CHHHHHHH
Confidence            56666666666666665   45553221         11356777777777777777776665222 222  37777777


Q ss_pred             HHHHHccC-CCCEEEEe
Q psy9711          75 FISVADNS-PIPVIIYN   90 (198)
Q Consensus        75 ~~~i~~~~-~~pi~lYn   90 (198)
                      ++.|.+.+ ++|+.+|-
T Consensus       194 v~~l~~~~~~~~l~~H~  210 (302)
T 2ftp_A          194 IEAVASEVPRERLAGHF  210 (302)
T ss_dssp             HHHHTTTSCGGGEEEEE
T ss_pred             HHHHHHhCCCCeEEEEe
Confidence            77777777 47776653

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=95.79  E-value=0.19  Score=40.83  Aligned_cols=92  Identities=15%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ..+.+|..+-++.++++.   +..|++=+-+    ...+++++.++.++++|||++++-++.   ++  .+++.++-+.+
T Consensus       132 l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~---~~--~~~~~~i~~~~  206 (295)
T 1s2w_A          132 LADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK---AD--PSDIEAFMKAW  206 (295)
T ss_dssp             BCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS---SS--SHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC---CC--HHHHHHHHHHc
Confidence            356778888888998886   4555554432    236999999999999999999986421   33  55554444444


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      .  .++|++ +| |...| ..+.+.+.+|
T Consensus       207 ~--~~~P~i-~~-~~~~~-~~~~~eL~~l  230 (295)
T 1s2w_A          207 N--NQGPVV-IV-PTKYY-KTPTDHFRDM  230 (295)
T ss_dssp             T--TCSCEE-EC-CSTTT-TSCHHHHHHH
T ss_pred             C--CCCCEE-Ee-CCCCC-CCCHHHHHHc
Confidence            2  238985 45 43222 3455555555

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=95.73  E-value=0.12  Score=43.98  Aligned_cols=81  Identities=12%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHhc-----CCeEEEeCCC---------------------------------CcHHHHHHHHHHHHh
Q psy9711           7 STEEEKLKIISTLRQET-----KKTIIAGTYC---------------------------------ESTRATIDLTQKAAK   48 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~---------------------------------~~~~~~i~~a~~a~~   48 (198)
                      .+.+|..+=++.++++.     ..-|++=+-+                                 ..++++|++++.+.+
T Consensus       198 vp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~  277 (433)
T 3eol_A          198 IPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP  277 (433)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHh
Confidence            46777777777776664     3445654432                                 468999999999999


Q ss_pred             cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CC
Q psy9711          49 AGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TF   93 (198)
Q Consensus        49 ~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~   93 (198)
                       |||.+.+-++   .++  .+++.++-+.|-...+.+++.||. |.
T Consensus       278 -GAD~If~e~~---~~~--~eei~~f~~~v~~~~P~~~L~~~~sPs  317 (433)
T 3eol_A          278 -YCDLIWMETS---KPD--LAQARRFAEAVHKAHPGKLLAYNCSPS  317 (433)
T ss_dssp             -GCSEEEECCS---SCC--HHHHHHHHHHHHHHSTTCCEEEECCSS
T ss_pred             -cCCEEEEeCC---CCC--HHHHHHHHHHhcccCCCcccccCCCCC
Confidence             9999999665   355  999999999998778888899985 54

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=95.73  E-value=0.16  Score=41.12  Aligned_cols=143  Identities=12%  Similarity=0.028  Sum_probs=88.5

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-C---CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP-Y---YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN   96 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P-~---y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg   96 (198)
                      +.-++.++-+..+      ++.++++|+|++.+..- .   +..|+   .|-+++..|-+.|++.+++| ++-|.|.  |
T Consensus        15 ~~i~~~~a~D~~s------A~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~P-viaD~d~--G   85 (290)
T 2hjp_A           15 RLFTAMAAHNPLV------AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIP-LIADIDT--G   85 (290)
T ss_dssp             CCEEEEECSSHHH------HHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSC-EEEECTT--T
T ss_pred             CcEEEecCCCHHH------HHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEEECCC--C
Confidence            4445667776544      45555689999999841 1   22232   46999999999999999999 6789984  5


Q ss_pred             cccCHHHHHH----HHcCCCEEEEeeC--C---------------------HHHHHHHHhhcCCCCeEEEecChhh----
Q psy9711          97 IDISVDTLVK----LAHHENIRGVKDT--D---------------------NIKLANMANQTKDLNFSVFAGSAGY----  145 (198)
Q Consensus        97 ~~l~~~~l~~----L~~~p~i~giK~s--d---------------------~~~~~~~~~~~~~~~~~v~~G~d~~----  145 (198)
                      +. +++...+    +.+ -.+.|+|.+  .                     ..+++........++|.|..=.|..    
T Consensus        86 yg-~~~~~~~~v~~l~~-aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~  163 (290)
T 2hjp_A           86 FG-NAVNVHYVVPQYEA-AGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL  163 (290)
T ss_dssp             TS-SHHHHHHHHHHHHH-HTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTC
T ss_pred             CC-CHHHHHHHHHHHHH-hCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccc
Confidence            55 5554443    433 678899876  2                     1123333322223678776544433    


Q ss_pred             -----HH---HHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711         146 -----LL---SGLLVGCAGGINALSAVLGGPICELYDLAK  177 (198)
Q Consensus       146 -----~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~~  177 (198)
                           +-   ....+|+++++.-..---++.+.++.+++.
T Consensus       164 g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~  203 (290)
T 2hjp_A          164 GQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP  203 (290)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcC
Confidence                 11   224579998876442223567777766654

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=95.73  E-value=0.14  Score=42.52  Aligned_cols=114  Identities=8%  Similarity=0.015  Sum_probs=74.5

Q ss_pred             CHHHHHH----HHHHHHHhc--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----CCCCHHH
Q psy9711           8 TEEEKLK----IISTLRQET--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQ----KKMTEDL   70 (198)
Q Consensus         8 t~~Er~~----l~~~~~~~~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----~~~~~~~   70 (198)
                      |.+.|.+    +++.+++++  +.||.+=++       +.+.++++++++.+++.|+|.+-+....+..    +. .+..
T Consensus       197 slenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~~~  275 (349)
T 3hgj_A          197 SLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPL-APGF  275 (349)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCC-CTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCC-Cccc
Confidence            4566654    555555555  678877554       3568999999999999999999998533221    11 0222


Q ss_pred             HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          71 IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        71 i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      -.++.+.|.+.+++||+.      .|.--+++...++.+.  -..+++=-.   |+....++.
T Consensus       276 ~~~~~~~ir~~~~iPVi~------~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~  332 (349)
T 3hgj_A          276 QVPFADAVRKRVGLRTGA------VGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAA  332 (349)
T ss_dssp             THHHHHHHHHHHCCEEEE------CSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHcCceEEE------ECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHH
Confidence            345677777777899886      4444578888888754  355665444   666555555

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=95.72  E-value=0.22  Score=40.41  Aligned_cols=151  Identities=12%  Similarity=0.075  Sum_probs=89.1

Q ss_pred             HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC----CCcCCC---CCHHHHHHHHHHHHccCCCCEEE
Q psy9711          16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P----~y~~~~---~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ++...+.-+.-++.|+-+..+      ++.++++|+|++.+..-    .+..|+   .|-+++..+-+.|++.+++| ++
T Consensus        11 lr~l~~~~~~i~~~~a~D~~s------A~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~P-vi   83 (295)
T 1s2w_A           11 LKQMLNSKDLEFIMEAHNGLS------ARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVP-IL   83 (295)
T ss_dssp             HHHHHHSSSCEEEEEECSHHH------HHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSC-EE
T ss_pred             HHHHHhCCCcEEEecCCCHHH------HHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EE
Confidence            444443324445678877544      44555679999999842    122222   35889999999999999999 88


Q ss_pred             EeCCCCcccccCHHHH----HHHHcCCCEEEEeeC--C---------------------HHHHHHHHhhcCCCCeEEEec
Q psy9711          89 YNNTFVTNIDISVDTL----VKLAHHENIRGVKDT--D---------------------NIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l----~~L~~~p~i~giK~s--d---------------------~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      -|.|.-.|   +++..    .++.+ -.+.|||.+  .                     ..+++........++|.|..=
T Consensus        84 aD~d~Gyg---~~~~v~~~v~~l~~-aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aR  159 (295)
T 1s2w_A           84 LDADTGYG---NFNNARRLVRKLED-RGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVAR  159 (295)
T ss_dssp             EECCSSCS---SHHHHHHHHHHHHH-TTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEE
T ss_pred             ecCCCCCC---CHHHHHHHHHHHHH-cCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEe
Confidence            89985433   33333    33332 679999977  2                     122222222223577877654


Q ss_pred             Chhh---------H---HHHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711         142 SAGY---------L---LSGLLVGCAGGINALSAVLGGPICELYDLAK  177 (198)
Q Consensus       142 ~d~~---------~---~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~  177 (198)
                      .|..         +   .....+|+++++.-..---++.+.++.+.+.
T Consensus       160 tda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~  207 (295)
T 1s2w_A          160 VEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWN  207 (295)
T ss_dssp             ECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHT
T ss_pred             ehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcC
Confidence            3432         1   1224689999876421112577778877765

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=95.68  E-value=0.15  Score=40.51  Aligned_cols=101  Identities=9%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC----CCcCCC---CCHHHHHHHHHHHHccC
Q psy9711          10 EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVADNS   82 (198)
Q Consensus        10 ~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P----~y~~~~---~~~~~i~~y~~~i~~~~   82 (198)
                      .++..-++...+..+.-++.++.+..+      ++.++++|+|++++..-    .+..|+   .|-+++..|-+.|++.+
T Consensus         6 ~~~~~~lr~l~~~~~~i~~~~ayD~~s------A~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~   79 (255)
T 2qiw_A            6 KSLATKFASDHESGKLLVLPTVWDTWS------AGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV   79 (255)
T ss_dssp             HHHHHHHHHHHHTCCCEECCEESSHHH------HHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHhCCCcEEEecCcCHHH------HHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC
Confidence            344444555544323334557776544      44566789999999841    122222   46999999999999999


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      ++| ++-|.|.-.|... .++..++.+ -.+.|||.+
T Consensus        80 ~~p-viaD~~~Gyg~~~-~~~~~~l~~-aGa~gv~iE  113 (255)
T 2qiw_A           80 SIP-VSVDVESGYGLSP-ADLIAQILE-AGAVGINVE  113 (255)
T ss_dssp             SSC-EEEECTTCTTCCH-HHHHHHHHH-TTCCEEEEC
T ss_pred             CCC-EEeccCCCcCcHH-HHHHHHHHH-cCCcEEEEC
Confidence            998 5668886555455 778888887 789999988

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=95.63  E-value=0.61  Score=37.36  Aligned_cols=157  Identities=13%  Similarity=0.115  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC----CCcCCC---CCHHHHHHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVA   79 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P----~y~~~~---~~~~~i~~y~~~i~   79 (198)
                      ||..++.+-++...+. + -++.++-+..+      ++.++++|++++.+..-    .+..|+   .|-+++..|-+.|+
T Consensus         1 m~~~~~~~~lr~l~~~-~-i~~~~a~D~~s------A~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~   72 (275)
T 2ze3_A            1 MTHADHARSFHALHQT-G-FLLPNAWDVAS------ARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIV   72 (275)
T ss_dssp             CHHHHHHHHHHHHHHH-C-EEECEESSHHH------HHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHhhC-C-eeEecccCHHH------HHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence            3455666556666554 5 55667766544      44555679999998831    122222   46999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHH----HHHHHHcCCCEEEEeeC--C-------------HHHHHHHHhhc--CCCCeEE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVD----TLVKLAHHENIRGVKDT--D-------------NIKLANMANQT--KDLNFSV  138 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~----~l~~L~~~p~i~giK~s--d-------------~~~~~~~~~~~--~~~~~~v  138 (198)
                      +.+++| ++-|.|  +|+.-+++    +..++.+ -.+.|+|.+  .             ..+++......  .+.+|.|
T Consensus        73 ~~~~~p-viaD~d--~Gyg~~~~~~~~~v~~l~~-aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i  148 (275)
T 2ze3_A           73 RAVAIP-VNADIE--AGYGHAPEDVRRTVEHFAA-LGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFL  148 (275)
T ss_dssp             HHCSSC-EEEECT--TCSSSSHHHHHHHHHHHHH-TTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred             hhcCCC-EEeecC--CCCCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEE
Confidence            999999 667887  45554554    4444554 789999988  3             13444433211  1567877


Q ss_pred             EecChhh---------------HH---HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711         139 FAGSAGY---------------LL---SGLLVGCAGGINALSAVLGGPICELYDLA  176 (198)
Q Consensus       139 ~~G~d~~---------------~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~  176 (198)
                      ..=.|..               +-   ....+|+++++.-.- --++.+.++.+++
T Consensus       149 ~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~-~~~~~~~~i~~~~  203 (275)
T 2ze3_A          149 NARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA-LQSQDIRALADAL  203 (275)
T ss_dssp             EEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC-CCHHHHHHHHHHC
T ss_pred             EEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHhc
Confidence            6544431               11   123579998875441 1236666666654

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=95.54  E-value=0.26  Score=39.18  Aligned_cols=117  Identities=13%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCCCccccc----CHHHHHH---HHc
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVTNIDI----SVDTLVK---LAH  109 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~tg~~l----~~~~l~~---L~~  109 (198)
                      +..++.|.+.||+.+.+.-. +-..  +.+++++..+++.+.+   ++|+++-..+  -|..+    +++.+.+   ++.
T Consensus        95 ~~~ve~Ai~~Ga~~v~~~~n-ig~~--~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~  169 (263)
T 1w8s_A           95 NCSVEEAVSLGASAVGYTIY-PGSG--FEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIAL  169 (263)
T ss_dssp             SSCHHHHHHTTCSEEEEEEC-TTST--THHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEe-cCCc--CHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHH
Confidence            45677888999999988532 2223  3777888888877655   7999886554  24343    6776654   442


Q ss_pred             C--CCEEEEeeC-CHHHHHHHHhhcCCC-CeEEEecCh--h------hHHHHhhcCCCeEEeccc
Q psy9711         110 H--ENIRGVKDT-DNIKLANMANQTKDL-NFSVFAGSA--G------YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       110 ~--p~i~giK~s-d~~~~~~~~~~~~~~-~~~v~~G~d--~------~~~~~l~~G~~G~is~~~  162 (198)
                      -  ..++++..+ +++.++.+.+ ..+. .+....|..  .      ++...+..|++|...+-+
T Consensus       170 ~~GAD~vkt~~~~~~e~~~~~~~-~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgra  233 (263)
T 1w8s_A          170 ELGADAMKIKYTGDPKTFSWAVK-VAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRN  233 (263)
T ss_dssp             HHTCSEEEEECCSSHHHHHHHHH-HTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             HcCCCEEEEcCCCCHHHHHHHHH-hCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehh
Confidence            2  455555544 7778777663 3333 455555543  1      444556899998887764

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=95.53  E-value=0.17  Score=41.81  Aligned_cols=115  Identities=5%  Similarity=0.030  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHhc----CCeEEEeCCC-------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET----KKTIIAGTYC-------ESTRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEH   74 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~----~~pvi~gv~~-------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~~y   74 (198)
                      |.+.|.+++..+++++    +.||.+=++.       .+.++.+++++.++++|+|.+-+....+....  ..+.--.++
T Consensus       189 slenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~  268 (340)
T 3gr7_A          189 SPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPF  268 (340)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHH
Confidence            4667765554444444    7788775543       35789999999999999999999854432210  012223456


Q ss_pred             HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      .+.|.+.+++||+.      .|.--+++...++.+..  ..|++=-.   |+....++.
T Consensus       269 ~~~ik~~~~iPVi~------~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~  321 (340)
T 3gr7_A          269 AELIRREADIPTGA------VGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAA  321 (340)
T ss_dssp             HHHHHHHTTCCEEE------ESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             HHHHHHHcCCcEEe------eCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHH
Confidence            67788888999886      34344788888887543  45555444   766666655

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=95.52  E-value=0.2  Score=41.30  Aligned_cols=114  Identities=7%  Similarity=0.035  Sum_probs=74.9

Q ss_pred             CHHHHHH----HHHHHHHhcCCeEEEeCCC-------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC---CCCCHHHHHH
Q psy9711           8 TEEEKLK----IISTLRQETKKTIIAGTYC-------ESTRATIDLTQKAAKAGANAALILCPYYFQ---KKMTEDLIYE   73 (198)
Q Consensus         8 t~~Er~~----l~~~~~~~~~~pvi~gv~~-------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~---~~~~~~~i~~   73 (198)
                      |.+.|.+    +++.++++++.||.+=++.       .+.++++++++.+++.|+|.+-+....+..   +. .+..-.+
T Consensus       189 slenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~-~~~~~~~  267 (338)
T 1z41_A          189 SPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINV-FPGYQVS  267 (338)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHH
T ss_pred             chhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCC-CccchHH
Confidence            3466644    4444444447788775543       468899999999999999999998764421   11 1212245


Q ss_pred             HHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          74 HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        74 y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      +.+.|.+.+++||+.      .|.--+++...++.+.  -..+++=-.   |+....++.
T Consensus       268 ~~~~ir~~~~iPVi~------~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~  321 (338)
T 1z41_A          268 FAEKIREQADMATGA------VGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA  321 (338)
T ss_dssp             HHHHHHHHHCCEEEE------CSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHCCCCEEE------ECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHH
Confidence            667777777899886      3434478888888854  456665544   776666665

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=95.41  E-value=0.1  Score=41.46  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccC-CCCEEE--EeC
Q psy9711          31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNS-PIPVII--YNN   91 (198)
Q Consensus        31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~-~~pi~l--Yn~   91 (198)
                      .|.++.+++++.++...+.|+|.+-+..|+..+..                .+-+.+.+..+++.+.+ ++|+++  |.+
T Consensus        25 ~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n  104 (262)
T 2ekc_A           25 VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYN  104 (262)
T ss_dssp             TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHH
T ss_pred             CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCc
Confidence            78899999999999999999999999999853210                12345567788888788 899999  666


Q ss_pred             C
Q psy9711          92 T   92 (198)
Q Consensus        92 P   92 (198)
                      |
T Consensus       105 ~  105 (262)
T 2ekc_A          105 P  105 (262)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=95.41  E-value=0.081  Score=42.49  Aligned_cols=97  Identities=16%  Similarity=0.097  Sum_probs=67.7

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN   96 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg   96 (198)
                      +.-++.++.+..      .|+.++++|+|++++..-.    +..++   .|-++++.|-+.|++.++.|+++=|.|. .+
T Consensus        17 ~~i~~~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf-gs   89 (275)
T 1o66_A           17 EKIAMLTAYESS------FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPF-GA   89 (275)
T ss_dssp             CCEEEEECCSHH------HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCT-TS
T ss_pred             CcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCC-CC
Confidence            344566777643      3566778999999874211    11111   3599999999999999999999899995 45


Q ss_pred             cccCHHHHH----HHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711          97 IDISVDTLV----KLAHHENIRGVKDT-D---NIKLANMA  128 (198)
Q Consensus        97 ~~l~~~~l~----~L~~~p~i~giK~s-d---~~~~~~~~  128 (198)
                      +..+++...    +|.+ -...|+|.+ .   ..+++.+.
T Consensus        90 y~~s~~~a~~na~rl~k-aGa~aVklEdg~e~~~~I~al~  128 (275)
T 1o66_A           90 YQQSKEQAFAAAAELMA-AGAHMVKLEGGVWMAETTEFLQ  128 (275)
T ss_dssp             SSSCHHHHHHHHHHHHH-TTCSEEEEECSGGGHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHH-cCCcEEEECCcHHHHHHHHHHH
Confidence            556665443    5667 889999987 2   35555554

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.38  E-value=0.72  Score=35.90  Aligned_cols=139  Identities=14%  Similarity=0.067  Sum_probs=81.1

Q ss_pred             HHHHHHHhcCCeEEEeCC-----C--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          15 IISTLRQETKKTIIAGTY-----C--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~-----~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      .++.+.+.+++||+ |+.     +  .-.....+.++.+.++|||.+++.......|. +.+++++++++.    +++++
T Consensus        60 ~i~~ir~~v~~Pvi-g~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~-~l~~~i~~~~~~----g~~v~  133 (232)
T 3igs_A           60 NLRMTRSLVSVPII-GIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPV-AVEALLARIHHH----HLLTM  133 (232)
T ss_dssp             HHHHHHTTCCSCEE-EECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSS-CHHHHHHHHHHT----TCEEE
T ss_pred             HHHHHHHhcCCCEE-EEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHH-HHHHHHHHHHHC----CCEEE
Confidence            45555555588985 321     1  11122455677788999999988765433332 356666666653    66666


Q ss_pred             EEeCCCCcccccCHHHHHHHHcC-CCEEEE---------eeC--CHHHHHHHHhhcCCCCeEEE--ecC--hhhHHHHhh
Q psy9711          88 IYNNTFVTNIDISVDTLVKLAHH-ENIRGV---------KDT--DNIKLANMANQTKDLNFSVF--AGS--AGYLLSGLL  151 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi---------K~s--d~~~~~~~~~~~~~~~~~v~--~G~--d~~~~~~l~  151 (198)
                      . +.       -+.+...+..+. ..++|+         |..  ++..+.++. +.   ++.++  .|-  ...+...+.
T Consensus       134 ~-~v-------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~-~~---~ipvIA~GGI~t~~d~~~~~~  201 (232)
T 3igs_A          134 A-DC-------SSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALH-DA---GCRVIAEGRYNSPALAAEAIR  201 (232)
T ss_dssp             E-EC-------CSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHH-HT---TCCEEEESCCCSHHHHHHHHH
T ss_pred             E-eC-------CCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHH-hc---CCcEEEECCCCCHHHHHHHHH
Confidence            4 21       245666666653 455553         222  667777665 32   33343  343  245667788


Q ss_pred             cCCCeEEecccccchHHHHH
Q psy9711         152 VGCAGGINALSAVLGGPICE  171 (198)
Q Consensus       152 ~G~~G~is~~~n~~P~~~~~  171 (198)
                      .|++|++-|.+-.-|+...+
T Consensus       202 ~GadgV~VGsal~~p~~~~~  221 (232)
T 3igs_A          202 YGAWAVTVGSAITRLEHICG  221 (232)
T ss_dssp             TTCSEEEECHHHHCHHHHHH
T ss_pred             cCCCEEEEehHhcCHHHHHH
Confidence            99999999977555654433

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=95.34  E-value=0.29  Score=38.32  Aligned_cols=153  Identities=13%  Similarity=0.140  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      +...-.+.++.+.++. +  +++|.|+--   +.+.++.|.++||+.++.  |.    .  ..++.++-++    .++|+
T Consensus        68 ~t~~a~e~I~~l~~~~~~--~~iGaGTVl---t~~~a~~Ai~AGA~fIvs--P~----~--~~~vi~~~~~----~gi~~  130 (232)
T 4e38_A           68 RSDAAVEAIRLLRQAQPE--MLIGAGTIL---NGEQALAAKEAGATFVVS--PG----F--NPNTVRACQE----IGIDI  130 (232)
T ss_dssp             TSTTHHHHHHHHHHHCTT--CEEEEECCC---SHHHHHHHHHHTCSEEEC--SS----C--CHHHHHHHHH----HTCEE
T ss_pred             CCCCHHHHHHHHHHhCCC--CEEeECCcC---CHHHHHHHHHcCCCEEEe--CC----C--CHHHHHHHHH----cCCCE
Confidence            3344567777777665 4  345655433   378888999999998863  43    1  5566666333    36776


Q ss_pred             EEEeCCCCcccccCHHHHHHHHcC-CCEEEEeeCC----HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCeEE
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDTD----NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAGGI  158 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~sd----~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G~i  158 (198)
                      +.       |.. +++.+.+-.+. ..++.+=-++    +..+..+. ... +++.++  .|-+ +.+...+..|+.+++
T Consensus       131 ip-------Gv~-TptEi~~A~~~Gad~vK~FPa~~~gG~~~lkal~-~p~-p~ip~~ptGGI~~~n~~~~l~aGa~~~v  200 (232)
T 4e38_A          131 VP-------GVN-NPSTVEAALEMGLTTLKFFPAEASGGISMVKSLV-GPY-GDIRLMPTGGITPSNIDNYLAIPQVLAC  200 (232)
T ss_dssp             EC-------EEC-SHHHHHHHHHTTCCEEEECSTTTTTHHHHHHHHH-TTC-TTCEEEEBSSCCTTTHHHHHTSTTBCCE
T ss_pred             Ec-------CCC-CHHHHHHHHHcCCCEEEECcCccccCHHHHHHHH-HHh-cCCCeeeEcCCCHHHHHHHHHCCCeEEE
Confidence            54       333 56555544443 3444432222    34444443 222 455544  3443 357788899999877


Q ss_pred             ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhch
Q psy9711         159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKP  194 (198)
Q Consensus       159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l  194 (198)
                      .|. .+.|..      .+++|||++..++-+++..+
T Consensus       201 gGs-~l~~~~------~i~~~~~~~i~~~a~~~~~~  229 (232)
T 4e38_A          201 GGT-WMVDKK------LVTNGEWDEIARLTREIVEQ  229 (232)
T ss_dssp             EEC-GGGCHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred             ECc-hhcChH------HhhcCCHHHHHHHHHHHHHH
Confidence            654 455543      33679998877766655443

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=95.27  E-value=0.13  Score=41.94  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHhc---CCeEEEeC-------CCCcHH-HHHHH-HHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           9 EEEKLKIISTLRQET---KKTIIAGT-------YCESTR-ATIDL-TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---~~pvi~gv-------~~~~~~-~~i~~-a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ..|..+.++.+++++   ++|+++=+       +..... +.+.. ++.+.++|+|.+=+-+|.+...+  .+++.+..+
T Consensus       137 ~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~~g~--~~~~~~vv~  214 (304)
T 1to3_A          137 AQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGA--RSDLLTASQ  214 (304)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCCCCC--HHHHHHHHH
Confidence            577778888888887   88876643       221222 44444 99999999998878777663233  788777777


Q ss_pred             HHHccCCCC-EEE
Q psy9711          77 SVADNSPIP-VII   88 (198)
Q Consensus        77 ~i~~~~~~p-i~l   88 (198)
                      ...+.+++| |++
T Consensus       215 ~~~~~~~~P~Vv~  227 (304)
T 1to3_A          215 RLNGHINMPWVIL  227 (304)
T ss_dssp             HHHHTCCSCEEEC
T ss_pred             hccccCCCCeEEE
Confidence            776668999 665

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=95.24  E-value=0.18  Score=39.96  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=50.9

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCC--------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTY--------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH   74 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~--------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y   74 (198)
                      +++.++..+.++.+++.+   ++|+++.++        ..+..+..+.++.+.+.|+|.+-+.+|    .+      .+.
T Consensus       124 ~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~----~~------~~~  193 (273)
T 2qjg_A          124 SDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT----GD------IDS  193 (273)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC----SS------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC----CC------HHH
Confidence            346677777777777776   888887652        134444445559999999998887643    22      356


Q ss_pred             HHHHHccCCCCEEE
Q psy9711          75 FISVADNSPIPVII   88 (198)
Q Consensus        75 ~~~i~~~~~~pi~l   88 (198)
                      ++++.+.+++|++.
T Consensus       194 l~~i~~~~~ipvva  207 (273)
T 2qjg_A          194 FRDVVKGCPAPVVV  207 (273)
T ss_dssp             HHHHHHHCSSCEEE
T ss_pred             HHHHHHhCCCCEEE
Confidence            77888788899988

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=95.20  E-value=0.15  Score=42.58  Aligned_cols=114  Identities=10%  Similarity=0.036  Sum_probs=71.2

Q ss_pred             CHHHHHHH----HHHHHHhc--CCeEEEeCCC--------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----CCCCHH
Q psy9711           8 TEEEKLKI----ISTLRQET--KKTIIAGTYC--------ESTRATIDLTQKAAKAGANAALILCPYYFQ----KKMTED   69 (198)
Q Consensus         8 t~~Er~~l----~~~~~~~~--~~pvi~gv~~--------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----~~~~~~   69 (198)
                      |.+.|.++    ++.+++++  +.||.+=++.        .+.++++++++.+++.|+|.+-+....+..    +. .+.
T Consensus       203 slenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~~  281 (363)
T 3l5l_A          203 SFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPW-GPA  281 (363)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCC-CTT
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCC-Ccc
Confidence            45667554    44444444  5677775542        467899999999999999999988643321    11 021


Q ss_pred             HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          70 LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        70 ~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      .-.++.+.|.+.+++||+.      .|.--+++...++.+..  ..+++=-.   |+....++.
T Consensus       282 ~~~~~~~~ir~~~~iPVi~------~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~  339 (363)
T 3l5l_A          282 FMGPIAERVRREAKLPVTS------AWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAA  339 (363)
T ss_dssp             TTHHHHHHHHHHHTCCEEE------CSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred             hhHHHHHHHHHHcCCcEEE------eCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHH
Confidence            2245666777777899886      34334788888887543  44554333   655555554

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=95.19  E-value=0.18  Score=41.88  Aligned_cols=113  Identities=12%  Similarity=0.110  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEE----eCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCc---CCCC---CHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQETKKTIIA----GTYCE-STRATIDLTQKAAKAGANAALILCPYYF---QKKM---TEDLIYEHFI   76 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~----gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~---~~~~---~~~~i~~y~~   76 (198)
                      ..+--.++++.+++.+++||.+    |.... +.+++++.++.++++|+|++.+..-...   .+..   .+..-.++.+
T Consensus       110 ~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~  189 (350)
T 3b0p_A          110 DLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVH  189 (350)
T ss_dssp             CHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHH
Confidence            4445556777776655889888    33222 2358899999999999999999864321   1100   0001246677


Q ss_pred             HHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711          77 SVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA  128 (198)
Q Consensus        77 ~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~  128 (198)
                      .|.+.+ ++||+.      .|--.+++...++.+  +..|+=..     |+..+.++.
T Consensus       190 ~ik~~~~~iPVia------nGgI~s~eda~~~l~--GaD~V~iGRa~l~~P~l~~~i~  239 (350)
T 3b0p_A          190 RLKGDFPQLTFVT------NGGIRSLEEALFHLK--RVDGVMLGRAVYEDPFVLEEAD  239 (350)
T ss_dssp             HHHHHCTTSEEEE------ESSCCSHHHHHHHHT--TSSEEEECHHHHHCGGGGTTHH
T ss_pred             HHHHhCCCCeEEE------ECCcCCHHHHHHHHh--CCCEEEECHHHHhCcHHHHHHH
Confidence            888888 799876      344457888888776  35555444     554444443

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=95.18  E-value=0.37  Score=39.04  Aligned_cols=91  Identities=22%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ..+.+|..+-++.++++.   +..|++=+..   ...+++++.++.++++|||++++-.+    ++  .+++    ++++
T Consensus       130 L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~----~~--~~~~----~~i~  199 (295)
T 1xg4_A          130 IVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI----TE--LAMY----RQFA  199 (295)
T ss_dssp             BCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC----CS--HHHH----HHHH
T ss_pred             cCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCC----CC--HHHH----HHHH
Confidence            467788888899999887   4445554432   23489999999999999999998654    33  5554    4455


Q ss_pred             ccCCCCEEEEeCCC-CcccccCHHHHHHH
Q psy9711          80 DNSPIPVIIYNNTF-VTNIDISVDTLVKL  107 (198)
Q Consensus        80 ~~~~~pi~lYn~P~-~tg~~l~~~~l~~L  107 (198)
                      ++.++|++. |.-. .....++.+.+.++
T Consensus       200 ~~~~iP~~~-N~~~~g~~p~~~~~eL~~~  227 (295)
T 1xg4_A          200 DAVQVPILA-NITEFGATPLFTTDELRSA  227 (295)
T ss_dssp             HHHCSCBEE-ECCSSSSSCCCCHHHHHHT
T ss_pred             HHcCCCEEE-EecccCCCCCCCHHHHHHc
Confidence            555689765 4321 01124666655555

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=95.15  E-value=0.22  Score=41.95  Aligned_cols=124  Identities=13%  Similarity=0.107  Sum_probs=76.4

Q ss_pred             eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHH
Q psy9711          26 TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTL  104 (198)
Q Consensus        26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l  104 (198)
                      ++.++++.  .++..+.++.+.+.|+|++.+-.+.   ..  ++.+.+..+.+.+.+ ++||++-       ...+++..
T Consensus       143 ~~~~~i~~--~~~~~~~a~~~~~~G~d~i~i~~~~---g~--~~~~~e~i~~ir~~~~~~pviv~-------~v~~~~~a  208 (404)
T 1eep_A          143 RVGAAVSI--DIDTIERVEELVKAHVDILVIDSAH---GH--STRIIELIKKIKTKYPNLDLIAG-------NIVTKEAA  208 (404)
T ss_dssp             CCEEEECS--CTTHHHHHHHHHHTTCSEEEECCSC---CS--SHHHHHHHHHHHHHCTTCEEEEE-------EECSHHHH
T ss_pred             eEEEEeCC--ChhHHHHHHHHHHCCCCEEEEeCCC---CC--hHHHHHHHHHHHHHCCCCeEEEc-------CCCcHHHH
Confidence            35666654  2346777888889999999884332   12  566777788888888 7999982       23467777


Q ss_pred             HHHHcCCCEEEEee----------------C--CHHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccc
Q psy9711         105 VKLAHHENIRGVKD----------------T--DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       105 ~~L~~~p~i~giK~----------------s--d~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~  162 (198)
                      .++.+.. +.+|+.                .  +...+..+.+.....++.|+.  |..  .....++.+|++++..+.+
T Consensus       209 ~~a~~~G-ad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~  287 (404)
T 1eep_A          209 LDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL  287 (404)
T ss_dssp             HHHHTTT-CSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHH
T ss_pred             HHHHhcC-CCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHH
Confidence            7776542 333332                1  222223222111123566664  432  4577888999999998876


Q ss_pred             cc
Q psy9711         163 AV  164 (198)
Q Consensus       163 n~  164 (198)
                      .+
T Consensus       288 ~l  289 (404)
T 1eep_A          288 FA  289 (404)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=95.14  E-value=0.1  Score=41.64  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN   96 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg   96 (198)
                      +.-++.++.+..      .|+.++++|+|++++....    +..++   .|-++++.|-+.|++.++.|+++=|.|. .+
T Consensus        17 ~~i~~~tayD~~------sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pf-gs   89 (264)
T 1m3u_A           17 KRFATITAYDYS------FAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPF-MA   89 (264)
T ss_dssp             CCEEEEECCSHH------HHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCT-TS
T ss_pred             CcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCC-CC
Confidence            334566777643      4566778899999985321    11121   3589999999999999999998899996 34


Q ss_pred             cccCHHHHH----HHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711          97 IDISVDTLV----KLAHHENIRGVKDT-D---NIKLANMA  128 (198)
Q Consensus        97 ~~l~~~~l~----~L~~~p~i~giK~s-d---~~~~~~~~  128 (198)
                      +. +++...    +|.+ -...|+|.+ .   ..+++.+.
T Consensus        90 y~-~~~~a~~~a~rl~k-aGa~aVklEgg~e~~~~I~al~  127 (264)
T 1m3u_A           90 YA-TPEQAFENAATVMR-AGANMVKIEGGEWLVETVQMLT  127 (264)
T ss_dssp             SS-SHHHHHHHHHHHHH-TTCSEEECCCSGGGHHHHHHHH
T ss_pred             cC-CHHHHHHHHHHHHH-cCCCEEEECCcHHHHHHHHHHH
Confidence            55 776444    5667 889999988 2   35555554

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=95.12  E-value=0.33  Score=38.14  Aligned_cols=156  Identities=19%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHccCC--------
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSP--------   83 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~~~--------   83 (198)
                      .++++.+.+..++||+++-+-.+.++    ++.+.+.|||++++....+.. .+  ++.+.    ++++..+        
T Consensus        63 ~~~i~~i~~~~~iPvi~~ggi~~~~~----i~~~~~~Gad~v~lg~~~~~~~~~--~~~~~----~~~~~~g~~~~~i~~  132 (266)
T 2w6r_A           63 TEMIRFVRPLTTLPIIASGGAGKMEH----FLEAFLAGADKALAASVFHFREID--MRELK----EYLKKHGGSGQAVVV  132 (266)
T ss_dssp             HHHHHHHGGGCCSCEEEESCCCSTHH----HHHHHHHTCSEEECCCCC--------CHHHH----HHCC----CCCEEEE
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCHHH----HHHHHHcCCcHhhhhHHHHhCCCC--HHHHH----HHHHHcCCCCCEEEE
Confidence            34555555555999999866555444    344556799999998776622 12  44443    3433322        


Q ss_pred             -CCE-------EEEeCCCCcccccCH-HHHHHHHcC-CCEEEE---e-e----C-CHHHHHHHHhhcCCCCeEEEecCh-
Q psy9711          84 -IPV-------IIYNNTFVTNIDISV-DTLVKLAHH-ENIRGV---K-D----T-DNIKLANMANQTKDLNFSVFAGSA-  143 (198)
Q Consensus        84 -~pi-------~lYn~P~~tg~~l~~-~~l~~L~~~-p~i~gi---K-~----s-d~~~~~~~~~~~~~~~~~v~~G~d-  143 (198)
                       +++       .++-.-.......++ +...++.+. ...+.+   + +    . |+..+.++. +..+-.+..-.|-. 
T Consensus       133 ~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~-~~~~ipvia~GGI~~  211 (266)
T 2w6r_A          133 AIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR-PLTTLPIIASGGAGK  211 (266)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHG-GGCCSCEEEESCCCS
T ss_pred             EEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHH-HHcCCCEEEeCCCCC
Confidence             111       111110000011333 444555543 344443   2 1    1 566666665 33333333333333 


Q ss_pred             -hhHHHHhhcCCCeEEecccccchH-HHHHHHHHHHcC
Q psy9711         144 -GYLLSGLLVGCAGGINALSAVLGG-PICELYDLAKAG  179 (198)
Q Consensus       144 -~~~~~~l~~G~~G~is~~~n~~P~-~~~~l~~~~~~g  179 (198)
                       +.+...+..|++|++.+.+-+..+ ...++.+.+.+.
T Consensus       212 ~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~~  249 (266)
T 2w6r_A          212 MEHFLEAFLAGADAALAASVFHFREIDMRELKEYLKKH  249 (266)
T ss_dssp             HHHHHHHHHHTCSEEEESTTTC----------------
T ss_pred             HHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHHHHC
Confidence             345566678999999998755433 444554444443

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=95.10  E-value=1.2  Score=36.78  Aligned_cols=150  Identities=11%  Similarity=0.037  Sum_probs=87.8

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEc--CCCCc---CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKA---GANAALIL--CPYYF---QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~---Gad~v~~~--~P~y~---~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      ++||+++++..+.++.++.++.+++.   ++|++-+-  .|..-   ....+++.+.+..+.+.+.++.|+.+--.|..+
T Consensus       126 ~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~  205 (354)
T 3tjx_A          126 KKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFD  205 (354)
T ss_dssp             TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCS
T ss_pred             CceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHhhcccccccCCCCC
Confidence            78999999999998888877776654   78876553  34321   111236778888888989999999998887643


Q ss_pred             ccccCHHHHHHHH-cCCCEEEEe----------------------------eC---CHHHHHHHH---hhcCCCCeEEE-
Q psy9711          96 NIDISVDTLVKLA-HHENIRGVK----------------------------DT---DNIKLANMA---NQTKDLNFSVF-  139 (198)
Q Consensus        96 g~~l~~~~l~~L~-~~p~i~giK----------------------------~s---d~~~~~~~~---~~~~~~~~~v~-  139 (198)
                      .  ..++...+.. +.....++.                            .|   ......+++   .+.. +++.|+ 
T Consensus       206 ~--~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~-~~~pIIg  282 (354)
T 3tjx_A          206 F--AAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFG  282 (354)
T ss_dssp             H--HHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred             c--hhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhc-CCCcEEE
Confidence            2  2333343333 443332221                            11   111112222   1222 334333 


Q ss_pred             ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         140 AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       140 ~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      +| -.  ......+.+|++.+..+++.++  |.++.+|.+.+
T Consensus       283 ~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L  324 (354)
T 3tjx_A          283 CGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSEL  324 (354)
T ss_dssp             ESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHH
T ss_pred             eCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHH
Confidence            33 22  2356778899999998887543  77777776543

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=95.09  E-value=0.88  Score=35.32  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             HHHHHHHhcCCeEEEeCC----C--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          15 IISTLRQETKKTIIAGTY----C--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~----~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      -++.+.+.+++||+.-.-    +  .-.....+.++.+.++|||.+++....-..|. +.+++++++++.    +++++.
T Consensus        60 ~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~-~l~~~i~~~~~~----g~~v~~  134 (229)
T 3q58_A           60 NLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPV-DIDSLLTRIRLH----GLLAMA  134 (229)
T ss_dssp             HHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSS-CHHHHHHHHHHT----TCEEEE
T ss_pred             HHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChH-HHHHHHHHHHHC----CCEEEE
Confidence            345555555889873221    0  11122455677788999999988765433332 256666666553    676664


Q ss_pred             EeCCCCcccccCHHHHHHHHcC-CCEEEEe---------e-C-CHHHHHHHHhhcCCCCeEEE--ecC--hhhHHHHhhc
Q psy9711          89 YNNTFVTNIDISVDTLVKLAHH-ENIRGVK---------D-T-DNIKLANMANQTKDLNFSVF--AGS--AGYLLSGLLV  152 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~~-p~i~giK---------~-s-d~~~~~~~~~~~~~~~~~v~--~G~--d~~~~~~l~~  152 (198)
                       +.       -+.+...+..+. ..++|+.         . . ++..+.++. +.   ++.++  .|-  .+.+...+..
T Consensus       135 -~v-------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~-~~---~ipvIA~GGI~t~~d~~~~~~~  202 (229)
T 3q58_A          135 -DC-------STVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLS-HA---GCRVIAEGRYNTPALAANAIEH  202 (229)
T ss_dssp             -EC-------SSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHH-TT---TCCEEEESSCCSHHHHHHHHHT
T ss_pred             -ec-------CCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHH-Hc---CCCEEEECCCCCHHHHHHHHHc
Confidence             21       245666666553 3555532         2 2 666666665 22   34444  333  2456677889


Q ss_pred             CCCeEEecccccchHHHHHHH
Q psy9711         153 GCAGGINALSAVLGGPICELY  173 (198)
Q Consensus       153 G~~G~is~~~n~~P~~~~~l~  173 (198)
                      |++|++-|.+-.-|+...+-|
T Consensus       203 GadgV~VGsai~~p~~~~~~f  223 (229)
T 3q58_A          203 GAWAVTVGSAITRIEHICQWF  223 (229)
T ss_dssp             TCSEEEECHHHHCHHHHHHHH
T ss_pred             CCCEEEEchHhcChHHHHHHH
Confidence            999999997766665544433

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=94.95  E-value=0.2  Score=41.74  Aligned_cols=110  Identities=11%  Similarity=-0.004  Sum_probs=71.3

Q ss_pred             HHHHHHH----HHHHHHhc-CCeEEEeCC-----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           9 EEEKLKI----ISTLRQET-KKTIIAGTY-----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         9 ~~Er~~l----~~~~~~~~-~~pvi~gv~-----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      .+.|.++    ++.+++++ .-||.+=++           ..+.++++++++.+++.|+|.+-+..+.+......+   .
T Consensus       207 lenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~---~  283 (364)
T 1vyr_A          207 VENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYS---E  283 (364)
T ss_dssp             HHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCC---H
T ss_pred             hhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCccc---H
Confidence            4566554    55555555 237777222           225678999999999999999999876543211012   2


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      ++.+.|.+.+++||+.=     .|  ++++...++.+..  .++++=-.   |+....++.
T Consensus       284 ~~~~~v~~~~~iPvi~~-----Gg--it~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~  337 (364)
T 1vyr_A          284 AFRQKVRERFHGVIIGA-----GA--YTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  337 (364)
T ss_dssp             HHHHHHHHHCCSEEEEE-----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEE-----CC--cCHHHHHHHHHCCCccEEEECHHHHhChhHHHHHH
Confidence            46677888889998862     23  3899999888654  45555443   776666665

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=94.93  E-value=0.075  Score=42.70  Aligned_cols=86  Identities=13%  Similarity=0.078  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCC-----------------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYC-----------------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE   73 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~-----------------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~   73 (198)
                      |..+.++.+++. ++||+.++|=                 ...+++++.++.++++||+++++-..    |   . +   
T Consensus       119 e~~~~I~al~~a-gIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p---~-~---  186 (275)
T 1o66_A          119 WMAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECV----L---A-E---  186 (275)
T ss_dssp             GGHHHHHHHHHT-TCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESC----C---H-H---
T ss_pred             HHHHHHHHHHHc-CCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecC----C---H-H---
Confidence            445566666654 8999865541                 12478999999999999999998642    1   2 2   


Q ss_pred             HHHHHHccCCCCEEEEeC-CCCcccccCHHHHHHHH
Q psy9711          74 HFISVADNSPIPVIIYNN-TFVTNIDISVDTLVKLA  108 (198)
Q Consensus        74 y~~~i~~~~~~pi~lYn~-P~~tg~~l~~~~l~~L~  108 (198)
                      -.++|++++++|++---. |...|..|=...+.-|.
T Consensus       187 ~a~~it~~l~iP~igIGaG~~~dgQvLV~~D~lG~~  222 (275)
T 1o66_A          187 LAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIF  222 (275)
T ss_dssp             HHHHHHHHCSSCEEEESSCSCSSEEEECHHHHTTCS
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCcceeeHHhhcCCC
Confidence            256889999999998764 55567777666665554

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=94.81  E-value=1.2  Score=35.47  Aligned_cols=141  Identities=18%  Similarity=0.165  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHh-cCCeEEEeCCCCcHH--HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQE-TKKTIIAGTYCESTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~-~~~pvi~gv~~~~~~--~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +|.+.-.++++.+.+. .++|++.=+..+..-  -.-+.++.++++|+|++++..     ..  .++. +-|...+++.+
T Consensus        77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~D-----lp--~ee~-~~~~~~~~~~g  148 (267)
T 3vnd_A           77 TTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIAD-----VP--VEES-APFSKAAKAHG  148 (267)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT-----SC--GGGC-HHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCC-----CC--HhhH-HHHHHHHHHcC
Confidence            4556667888888877 388976533332211  235688999999999999841     11  3343 44555666778


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecCh----hhH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSA----GYL  146 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~  146 (198)
                      +..+..=.|.     -+.+.+.++++ .+.++.+         ...   +...+.+.+++..  +..+..|.+    +..
T Consensus       149 l~~i~liaP~-----t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~  221 (267)
T 3vnd_A          149 IAPIFIAPPN-----ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQV  221 (267)
T ss_dssp             CEEECEECTT-----CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHH
T ss_pred             CeEEEEECCC-----CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHH
Confidence            7766555664     24677777774 3444444         221   2222222232333  344555543    234


Q ss_pred             HHHhhcCCCeEEeccc
Q psy9711         147 LSGLLVGCAGGINALS  162 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~  162 (198)
                      ...+..|+||+|.|.+
T Consensus       222 ~~~~~~gADgvVVGSa  237 (267)
T 3vnd_A          222 RAAIKAGAAGAISGSA  237 (267)
T ss_dssp             HHHHHTTCSEEEECHH
T ss_pred             HHHHHcCCCEEEECHH
Confidence            3378899999999974

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=94.79  E-value=0.44  Score=37.91  Aligned_cols=61  Identities=23%  Similarity=0.207  Sum_probs=42.0

Q ss_pred             CeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCC------CCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          25 KTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCP------YYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        25 ~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P------~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      .-||+|..+ .+.+.++++++.++++|++.|.....      |-++..  .++-.+..+++++..++|++
T Consensus        24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~--~~egl~~l~~~~~~~Gl~~~   91 (262)
T 1zco_A           24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGY--GEKALRWMREAADEYGLVTV   91 (262)
T ss_dssp             CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCC--THHHHHHHHHHHHHHTCEEE
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCc--cHHHHHHHHHHHHHcCCcEE
Confidence            347788643 36889999999999999999887742      111111  15556667777777777776

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=94.76  E-value=0.28  Score=39.61  Aligned_cols=52  Identities=6%  Similarity=-0.214  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      +.+...++++.+++.+++||++=++. .+.++..+.++.++++|+|++.+..-
T Consensus       142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~  194 (311)
T 1jub_A          142 DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNS  194 (311)
T ss_dssp             CHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence            66777888888877668899886543 35667888899999999999988653

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=94.74  E-value=0.51  Score=37.39  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             HHHHHHHHhc-CCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          14 KIISTLRQET-KKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        14 ~l~~~~~~~~-~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      .+++.+.+.- ++|++.=...+..-.  .=+.++.++++|+|++++..    .|   .++ .+-|+..+++.++..+..=
T Consensus        77 ~~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipD----LP---~eE-~~~~~~~~~~~Gl~~I~lv  148 (252)
T 3tha_A           77 SVFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPE----LS---FEE-SDDLIKECERYNIALITLV  148 (252)
T ss_dssp             HHHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTT----CC---GGG-CHHHHHHHHHTTCEECEEE
T ss_pred             HHHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCC----CC---HHH-HHHHHHHHHHcCCeEEEEe
Confidence            3444443332 579877566544322  35588999999999999853    11   333 3557777888888766555


Q ss_pred             CCCCcccccCHHHHHHHHcC-CCEEEEee----C--C---HHHHHHH---HhhcCCCCeEEEecCh---hhHHHHhhcCC
Q psy9711          91 NTFVTNIDISVDTLVKLAHH-ENIRGVKD----T--D---NIKLANM---ANQTKDLNFSVFAGSA---GYLLSGLLVGC  154 (198)
Q Consensus        91 ~P~~tg~~l~~~~l~~L~~~-p~i~giK~----s--d---~~~~~~~---~~~~~~~~~~v~~G~d---~~~~~~l~~G~  154 (198)
                      .|.     -+.+.++++++. +.++.+=-    +  .   ...+.++   +++..  +..+..|.+   .--...+..++
T Consensus       149 aP~-----t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~~A  221 (252)
T 3tha_A          149 SVT-----TPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRKVA  221 (252)
T ss_dssp             ETT-----SCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHTTTS
T ss_pred             CCC-----CcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHhcC
Confidence            553     246888888864 45554422    1  1   1112222   22232  344555543   12234455679


Q ss_pred             CeEEeccc
Q psy9711         155 AGGINALS  162 (198)
Q Consensus       155 ~G~is~~~  162 (198)
                      ||+|.|.+
T Consensus       222 DGVIVGSA  229 (252)
T 3tha_A          222 DGVIVGTS  229 (252)
T ss_dssp             SEEEECHH
T ss_pred             CEEEECHH
Confidence            99999975

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=94.74  E-value=0.51  Score=36.33  Aligned_cols=143  Identities=9%  Similarity=0.027  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc-cC----CC-
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NS----PI-   84 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~-~~----~~-   84 (198)
                      ...++++.+.+..++|++++-+-.+.++    ++.+.++|||++.+..+.+..    ++.+.+..+..-. ..    +. 
T Consensus        64 ~~~~~i~~i~~~~~ipvi~~g~i~~~~~----~~~~~~~Gad~V~i~~~~~~~----~~~~~~~~~~~g~~~i~~~~~~~  135 (253)
T 1h5y_A           64 TFIDSVKRVAEAVSIPVLVGGGVRSLED----ATTLFRAGADKVSVNTAAVRN----PQLVALLAREFGSQSTVVAIDAK  135 (253)
T ss_dssp             HHHHHHHHHHHHCSSCEEEESSCCSHHH----HHHHHHHTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEE
T ss_pred             ccHHHHHHHHHhcCCCEEEECCCCCHHH----HHHHHHcCCCEEEEChHHhhC----cHHHHHHHHHcCCCcEEEEEEee
Confidence            3455666666655899998776655543    455666899999998665432    3333333333211 01    11 


Q ss_pred             ----CEEEEeCCCCcccccC-HHHHHHHHcC-CCEEEE--------eeC-CHHHHHHHHhhcCCCCeEEEecCh--hhHH
Q psy9711          85 ----PVIIYNNTFVTNIDIS-VDTLVKLAHH-ENIRGV--------KDT-DNIKLANMANQTKDLNFSVFAGSA--GYLL  147 (198)
Q Consensus        85 ----pi~lYn~P~~tg~~l~-~~~l~~L~~~-p~i~gi--------K~s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~  147 (198)
                          ++.++-.-.......+ .+.+.++.+. ...+.+        +.. ++..+.++.+ ..+-.+.+-.|-.  +.+.
T Consensus       136 ~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~-~~~~pvia~GGi~~~~~~~  214 (253)
T 1h5y_A          136 WNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVAD-SVRIPVIASGGAGRVEHFY  214 (253)
T ss_dssp             ECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHH-HCSSCEEEESCCCSHHHHH
T ss_pred             cCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHH-hcCCCEEEeCCCCCHHHHH
Confidence                0222221111001123 3445555543 344443        223 5666766653 3333343334433  3556


Q ss_pred             HHhhcCCCeEEeccc
Q psy9711         148 SGLLVGCAGGINALS  162 (198)
Q Consensus       148 ~~l~~G~~G~is~~~  162 (198)
                      ..+..|++|++.|.+
T Consensus       215 ~~~~~Ga~~v~vgsa  229 (253)
T 1h5y_A          215 EAAAAGADAVLAASL  229 (253)
T ss_dssp             HHHHTTCSEEEESHH
T ss_pred             HHHHcCCcHHHHHHH
Confidence            667889999998875

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=94.73  E-value=0.14  Score=42.73  Aligned_cols=109  Identities=7%  Similarity=-0.027  Sum_probs=70.8

Q ss_pred             HHHHHHH----HHHHHHhcC-CeEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHH
Q psy9711           9 EEEKLKI----ISTLRQETK-KTIIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIY   72 (198)
Q Consensus         9 ~~Er~~l----~~~~~~~~~-~pvi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~   72 (198)
                      .+.|.++    ++.++++++ -||.+=++.          .+.++++++++.+++.|+|.+-+..+.+.. +. .+.   
T Consensus       207 lenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~~~---  282 (365)
T 2gou_A          207 LENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPD-TPV---  282 (365)
T ss_dssp             HHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC-CCH---
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCC-ccH---
Confidence            4555444    455555442 288773332          356889999999999999999999875532 11 122   


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      ++.+.|.+.+++||+.     ..|+  +++...++.+..  ..+++=-.   |+....++.
T Consensus       283 ~~~~~i~~~~~iPvi~-----~Ggi--~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~  336 (365)
T 2gou_A          283 SFKRALREAYQGVLIY-----AGRY--NAEKAEQAINDGLADMIGFGRPFIANPDLPERLR  336 (365)
T ss_dssp             HHHHHHHHHCCSEEEE-----ESSC--CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHCCCcEEE-----eCCC--CHHHHHHHHHCCCcceehhcHHHHhCchHHHHHH
Confidence            4567777788899876     2333  889998888644  45554433   766666655

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=94.70  E-value=0.98  Score=34.03  Aligned_cols=134  Identities=13%  Similarity=0.053  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-e
Q psy9711          13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-N   90 (198)
Q Consensus        13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n   90 (198)
                      .++++.+.+.. +.||.++.-.....+  ..++.+.++|+|++.+..-    +.  ++.+.+..+.+ +..++++++- .
T Consensus        41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~--~~~~~~~~~Gad~v~v~~~----~~--~~~~~~~~~~~-~~~g~~~~v~~~  111 (211)
T 3f4w_A           41 VNAIKAIKEKYPHKEVLADAKIMDGGH--FESQLLFDAGADYVTVLGV----TD--VLTIQSCIRAA-KEAGKQVVVDMI  111 (211)
T ss_dssp             THHHHHHHHHCTTSEEEEEEEECSCHH--HHHHHHHHTTCSEEEEETT----SC--HHHHHHHHHHH-HHHTCEEEEECT
T ss_pred             HHHHHHHHHhCCCCEEEEEEEeccchH--HHHHHHHhcCCCEEEEeCC----CC--hhHHHHHHHHH-HHcCCeEEEEec
Confidence            45677777775 889988754333332  2378889999999999421    12  44444444433 4457777752 2


Q ss_pred             CCCCcccccCHHHHHHHHcC-CCEEEEeeC---------CHHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhcCCCeE
Q psy9711          91 NTFVTNIDISVDTLVKLAHH-ENIRGVKDT---------DNIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLVGCAGG  157 (198)
Q Consensus        91 ~P~~tg~~l~~~~l~~L~~~-p~i~giK~s---------d~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~G~~G~  157 (198)
                      .|. +    +.+.+.++.+. ..++++-..         +...+.++. +.. +++.+  -.|-. +.....+..|++|+
T Consensus       112 ~~~-t----~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~-~~~-~~~~i~~~gGI~~~~~~~~~~~Gad~v  184 (211)
T 3f4w_A          112 CVD-D----LPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITML-KVR-RKARIAVAGGISSQTVKDYALLGPDVV  184 (211)
T ss_dssp             TCS-S----HHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHH-HHC-SSCEEEEESSCCTTTHHHHHTTCCSEE
T ss_pred             CCC-C----HHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHH-HHc-CCCcEEEECCCCHHHHHHHHHcCCCEE
Confidence            232 1    23555666553 455555321         334555544 332 23333  33433 34556778999999


Q ss_pred             Eeccc
Q psy9711         158 INALS  162 (198)
Q Consensus       158 is~~~  162 (198)
                      +.|.+
T Consensus       185 vvGsa  189 (211)
T 3f4w_A          185 IVGSA  189 (211)
T ss_dssp             EECHH
T ss_pred             EECHH
Confidence            98865

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=94.61  E-value=1.3  Score=35.35  Aligned_cols=138  Identities=9%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHH---HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTR---ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~---~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +|.+.-.++++.+.+...+||++= +-.+.-   ..-+.++.+.++|+|++++..     .  +.+++.++.+.+ ++.+
T Consensus        74 ~~~~~~~~~v~~ir~~~~~Pii~m-~y~n~v~~~g~~~f~~~~~~aG~dGviv~D-----l--~~ee~~~~~~~~-~~~g  144 (271)
T 1ujp_A           74 MSVQGALELVREVRALTEKPLFLM-TYLNPVLAWGPERFFGLFKQAGATGVILPD-----L--PPDEDPGLVRLA-QEIG  144 (271)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCEEEE-CCHHHHHHHCHHHHHHHHHHHTCCEEECTT-----C--CGGGCHHHHHHH-HHHT
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEE-ecCcHHHHhhHHHHHHHHHHcCCCEEEecC-----C--CHHHHHHHHHHH-HHcC
Confidence            344555677777776668898763 222221   235678888999999988852     1  134455555444 4556


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC---C-HHHHHHHHhhcCCCCeEEEecCh---hhH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT---D-NIKLANMANQTKDLNFSVFAGSA---GYL  146 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s---d-~~~~~~~~~~~~~~~~~v~~G~d---~~~  146 (198)
                      ++.+..-.|.     .+.+-+.++++ -..++         |....   + ...+.++. +..  +..|+.|..   .--
T Consensus       145 l~~i~liap~-----s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr-~~~--~~Pv~vGfGI~t~e~  216 (271)
T 1ujp_A          145 LETVFLLAPT-----STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIK-ART--ALPVAVGFGVSGKAT  216 (271)
T ss_dssp             CEEECEECTT-----CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHH-TTC--CSCEEEESCCCSHHH
T ss_pred             CceEEEeCCC-----CCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHH-hhc--CCCEEEEcCCCCHHH
Confidence            6655433443     45677777774 33333         22222   2 23444443 333  444555533   223


Q ss_pred             HHHhhcCCCeEEeccc
Q psy9711         147 LSGLLVGCAGGINALS  162 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~  162 (198)
                      ...+ .|+||+|.|.+
T Consensus       217 a~~~-~~ADgVIVGSA  231 (271)
T 1ujp_A          217 AAQA-AVADGVVVGSA  231 (271)
T ss_dssp             HHHH-TTSSEEEECHH
T ss_pred             HHHh-cCCCEEEEChH
Confidence            3446 99999999976

>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}

Probab=94.41  E-value=1.2  Score=36.50  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHH----HHHHHHHHHHccCC-------CCEEEEeCCCCcccccCHHHHHHH
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTED----LIYEHFISVADNSP-------IPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~----~i~~y~~~i~~~~~-------~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      .++.++...++|+|++++..|.-...+  ++    -+..|++.|.+...       .| ++|..-   |.   ...+..|
T Consensus       189 ~~~~~~~~~~aGad~i~i~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~~~~~~~-ii~~~~---g~---~~~l~~l  259 (354)
T 3cyv_A          189 VTLYLNAQIKAGAQAVMIFDTWGGVLT--GRDYQQFSLYYMHKIVDGLLRENDGRRVP-VTLFTK---GG---GQWLEAM  259 (354)
T ss_dssp             HHHHHHHHHHTTCSEEEEECTTGGGSC--HHHHHHHTHHHHHHHHHHSCSEETTEECC-EEEECT---TT---TTTHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEeCCccccCC--HHHHHHHhHHHHHHHHHHHHHhcCCCCCC-EEEECC---CH---HHHHHHH
Confidence            355666777899999999877533333  64    45567788888773       78 444432   22   2356677


Q ss_pred             HcCC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhh-cCC-CeEEeccccc-----ch
Q psy9711         108 AHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLL-VGC-AGGINALSAV-----LG  166 (198)
Q Consensus       108 ~~~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~-~G~-~G~is~~~n~-----~P  166 (198)
                      ++.+ .++++-.. |+....+.+    ++++.+..+.|..+            ...+. .|. .|+|-+.++=     -|
T Consensus       260 ~~~g~d~i~~d~~~dl~~~~~~~----g~~~~l~Gn~dp~~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~  335 (354)
T 3cyv_A          260 AETGCDALGLDWTTDIADARRRV----GNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPP  335 (354)
T ss_dssp             HTTSCSEEECCTTSCHHHHHHHH----TTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCCTTSCH
T ss_pred             HhcCCCEEEeCCCCCHHHHHHHh----CCCeEEEecCChHHhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCCCCCCH
Confidence            7764 78888434 888765543    34455554444311            11233 254 4788766643     36


Q ss_pred             HHHHHHHHHHHc
Q psy9711         167 GPICELYDLAKA  178 (198)
Q Consensus       167 ~~~~~l~~~~~~  178 (198)
                      +-+..+++++++
T Consensus       336 env~a~v~~v~~  347 (354)
T 3cyv_A          336 EHAGVFVEAVHR  347 (354)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777776653

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=94.40  E-value=0.59  Score=37.47  Aligned_cols=63  Identities=24%  Similarity=0.232  Sum_probs=43.9

Q ss_pred             CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      +.-||+|.++. +.+.+++.++.++++|++++-..      .|+-++..  .++-++.++++++..++|++-
T Consensus        38 ~~~vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~--g~~gl~~l~~~~~~~Gl~~~t  107 (276)
T 1vs1_A           38 SKAVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGL--GLEGLKLLRRAGDEAGLPVVT  107 (276)
T ss_dssp             BCEEEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCC--THHHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCC--CHHHHHHHHHHHHHcCCcEEE
Confidence            35688887655 67889999999999999986443      12212211  245567778888888888874

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=94.34  E-value=0.1  Score=42.01  Aligned_cols=86  Identities=14%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCCC-----------------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYCE-----------------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE   73 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~~-----------------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~   73 (198)
                      |..+.++.+++. ++||+.++|-+                 ..+++++.++.++++||+++++-..    |   . +   
T Consensus       137 e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p---~-~---  204 (281)
T 1oy0_A          137 RVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----P---A-E---  204 (281)
T ss_dssp             GGHHHHHHHHHH-TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESC----C---H-H---
T ss_pred             HHHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC----C---H-H---
Confidence            445556666655 89988544321                 2478899999999999999998642    1   2 2   


Q ss_pred             HHHHHHccCCCCEEEEeC-CCCcccccCHHHHHHHH
Q psy9711          74 HFISVADNSPIPVIIYNN-TFVTNIDISVDTLVKLA  108 (198)
Q Consensus        74 y~~~i~~~~~~pi~lYn~-P~~tg~~l~~~~l~~L~  108 (198)
                      -.++|++++++|++---. |...|..|=...+.-|.
T Consensus       205 ~a~~it~~l~iP~igIGaG~~~dgQvLV~~D~lG~~  240 (281)
T 1oy0_A          205 LATQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFS  240 (281)
T ss_dssp             HHHHHHHHCSSCEEEESSCSCSSEEEECHHHHTTCS
T ss_pred             HHHHHHHhCCCCEEEeCCCCCCCcceeeHhhhcCCC
Confidence            356889999999998754 55567777666555554

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=94.31  E-value=0.22  Score=39.31  Aligned_cols=126  Identities=14%  Similarity=0.080  Sum_probs=77.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCC--------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCE--------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~--------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +..|+.++|.++++.+.+. +..|+.-+|..        ++.+-+++++..-++||+.|++-.-                
T Consensus       108 ~i~l~~~~~~~~I~~~~~~-G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEar----------------  170 (251)
T 1qwg_A          108 SSDISLEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR----------------  170 (251)
T ss_dssp             SSCCCHHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT----------------
T ss_pred             cccCCHHHHHHHHHHHHHC-CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeee----------------
Confidence            4579999999999999887 67777766654        4588899999999999999999642                


Q ss_pred             HHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEE-ecChh-hHHHHhh
Q psy9711          76 ISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT-DNIKLANMANQTKDLNFSVF-AGSAG-YLLSGLL  151 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~-~G~d~-~~~~~l~  151 (198)
                           .++.-|-+|+.-+    ++-.+.+.+|. ++|-=.=|=+. +..+...+++ ..++++.+. ...++ .-+.++.
T Consensus       171 -----EsG~~iGi~~~~g----~~r~d~v~~i~~~l~~eklifEAp~k~qq~~fI~-~fG~~VNLgNI~~~eVi~LE~LR  240 (251)
T 1qwg_A          171 -----ESGKGKGLFDKEG----KVKENELDVLAKNVDINKVIFEAPQKSQQVAFIL-KFGSSVNLANIAFDEVISLETLR  240 (251)
T ss_dssp             -----TTCCSSTTBCTTS----CBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHH-HHCTTCCEEEEEGGGHHHHHHHH
T ss_pred             -----cccCCcccCCCCC----CCcHHHHHHHHHhCChhhEEEECCChHHHHHHHH-HhCCCccccCCCHHHHHHHHHHH
Confidence                 3344444555321    34555666665 23211111122 5455445553 346666663 33333 3456666


Q ss_pred             cCCCe
Q psy9711         152 VGCAG  156 (198)
Q Consensus       152 ~G~~G  156 (198)
                      .|..|
T Consensus       241 ~GLrg  245 (251)
T 1qwg_A          241 RGLRG  245 (251)
T ss_dssp             HTCSG
T ss_pred             ccccc
Confidence            66543

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=94.29  E-value=1.2  Score=37.06  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.++++.+++++  ++++.+-+ ++.+.+++++.++..++.|+   .+-.|..   +      .+.++.|.+++++
T Consensus       171 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iE~P~~---~------~~~~~~l~~~~~i  238 (379)
T 2rdx_A          171 DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY---ILEQPCR---S------YEECQQVRRVADQ  238 (379)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC---EEECCSS---S------HHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe---EEeCCcC---C------HHHHHHHHhhCCC
Confidence            3455677888888877  78887755 45578999999999999887   4455542   2      4677888888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=      +.-.+++.+.++.+  .-+++.+|-+   .+....++
T Consensus       239 PI~~d------e~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  280 (379)
T 2rdx_A          239 PMKLD------ECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRT  280 (379)
T ss_dssp             CEEEC------TTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHH
T ss_pred             CEEEe------CCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHH
Confidence            99873      33357788888863  5789999998   55544444

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=94.26  E-value=1.3  Score=35.31  Aligned_cols=89  Identities=16%  Similarity=0.226  Sum_probs=57.9

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----CC------------CCHHHHHHHHHHHHcc-CCCCEEE--
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ----KK------------MTEDLIYEHFISVADN-SPIPVII--   88 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----~~------------~~~~~i~~y~~~i~~~-~~~pi~l--   88 (198)
                      ++-.|.++.+.+++.++...+.|||.+-+.-|+-.+    |.            .+-+.+++..+++-+. .++|+++  
T Consensus        25 yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~  104 (271)
T 3nav_A           25 FVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLM  104 (271)
T ss_dssp             EEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            345799999999999999999999999999987332    11            1123555666666655 6899976  


Q ss_pred             EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      |.+|-.   ....+-+.+-+.--.+.|+--.
T Consensus       105 Y~n~v~---~~g~~~f~~~~~~aGvdGvIip  132 (271)
T 3nav_A          105 YANLVY---ARGIDDFYQRCQKAGVDSVLIA  132 (271)
T ss_dssp             CHHHHH---HTCHHHHHHHHHHHTCCEEEET
T ss_pred             cCcHHH---HHhHHHHHHHHHHCCCCEEEEC
Confidence            777732   1233444444432334554444

>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}

Probab=94.25  E-value=0.88  Score=37.86  Aligned_cols=126  Identities=17%  Similarity=0.095  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH----HHHHHHHHHccCC-------CCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDL----IYEHFISVADNSP-------IPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~----i~~y~~~i~~~~~-------~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      ++.++...++|||++++.-+.-...+  ++.    +.-|++.|.+...       .|++++..    |.   ...+..++
T Consensus       200 ~~y~~~qi~aGad~i~ifDs~~~~Ls--p~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~----g~---~~~l~~l~  270 (368)
T 4exq_A          200 AAYLNAQIEAGAQAVMIFDTWGGALA--DGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTK----GG---GLWLEDLA  270 (368)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTGGGSC--TTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEET----TC---GGGHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEeCCccccCC--HHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC----Cc---HHHHHHHH
Confidence            45556667899999998766533333  555    5567788888763       68876653    22   24566777


Q ss_pred             cCC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHH------------HHhh-cC-CCeEEeccccc-----chH
Q psy9711         109 HHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLL------------SGLL-VG-CAGGINALSAV-----LGG  167 (198)
Q Consensus       109 ~~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~------------~~l~-~G-~~G~is~~~n~-----~P~  167 (198)
                      +.+ +++++=.. |+....+.+    ++++.+..+.|..++            ..+. .| ..|+|-++++=     -|+
T Consensus       271 ~~g~d~i~~d~~~dl~~ak~~~----g~~~~l~Gnldp~~L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~p~tp~E  346 (368)
T 4exq_A          271 ATGVDAVGLDWTVNLGRARERV----AGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPE  346 (368)
T ss_dssp             TSSCSEEECCTTSCHHHHHHHH----TTSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCCTTCCHH
T ss_pred             HhCCCEEeeCCCCCHHHHHHHh----CCCEEEEECCCHHHhCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCcCHH
Confidence            764 78888555 888776654    345555544443211            1122 24 36787666542     357


Q ss_pred             HHHHHHHHHHc
Q psy9711         168 PICELYDLAKA  178 (198)
Q Consensus       168 ~~~~l~~~~~~  178 (198)
                      -+..+++++++
T Consensus       347 nv~a~veav~~  357 (368)
T 4exq_A          347 HVAELVDEVHR  357 (368)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776653

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=94.23  E-value=0.34  Score=40.60  Aligned_cols=118  Identities=8%  Similarity=0.076  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.++++.+++++  ++++.+-+ ++.+.+++++.++..++.|++.+  --|.  .+.  +   .+.++.|.+++++|
T Consensus       177 ~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~iP  247 (391)
T 2qgy_A          177 LSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI--EEPV--DGE--N---ISLLTEIKNTFNMK  247 (391)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE--ECSS--CTT--C---HHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE--eCCC--Chh--h---HHHHHHHHhhCCCC
Confidence            455667888888877  78888755 45578999999999999998854  4453  121  2   46677888888999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |+.=      +.-.+++.+.++.+  .-+++-+|-+   .+....++.+....-++.+..|
T Consensus       248 Ia~d------E~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~  302 (391)
T 2qgy_A          248 VVTG------EKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPH  302 (391)
T ss_dssp             EEEC------TTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCB
T ss_pred             EEEc------CCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEecc
Confidence            9873      33456888888884  4689999988   5554444432111234455444

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=94.21  E-value=1.3  Score=36.84  Aligned_cols=146  Identities=8%  Similarity=-0.029  Sum_probs=87.8

Q ss_pred             CCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEc--CCCCcC--CCCCHHHHHHHHHHHHcc-------CCCCEE
Q psy9711          24 KKTIIAGTYCE-----STRATIDLTQKAAKAGANAALIL--CPYYFQ--KKMTEDLIYEHFISVADN-------SPIPVI   87 (198)
Q Consensus        24 ~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~--~~~~~~~i~~y~~~i~~~-------~~~pi~   87 (198)
                      +.||++.++.+     +.++-++.++.+.+ ++|++-+-  .|..-.  .-.+++.+.+..+.+.++       +++||+
T Consensus       146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~-~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~  224 (367)
T 3zwt_A          146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGP-LADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVL  224 (367)
T ss_dssp             TCCEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEE
T ss_pred             CceEEEEEecCCCCCcCHHHHHHHHHHHhh-hCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEE
Confidence            68999999875     56777777777765 58888763  454211  001367777777777653       689999


Q ss_pred             EEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-------------------------C----HHHHHHHHhhcCCCC
Q psy9711          88 IYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-------------------------D----NIKLANMANQTKDLN  135 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-------------------------d----~~~~~~~~~~~~~~~  135 (198)
                      +=-.|.     ++.+.+.+++   +--.+.||..+                         .    ...+.++. +..+++
T Consensus       225 vKi~p~-----~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~-~~v~~~  298 (367)
T 3zwt_A          225 VKIAPD-----LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMY-ALTQGR  298 (367)
T ss_dssp             EEECSC-----CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHH-HHTTTC
T ss_pred             EEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHH-HHcCCC
Confidence            977665     3444443333   22234444432                         0    12233333 344445


Q ss_pred             eEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         136 FSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       136 ~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      +.|+. | ..  ......+..|++++..+.+.++  |.++.++.+.+
T Consensus       299 ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l  345 (367)
T 3zwt_A          299 VPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKREL  345 (367)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHH
Confidence            55543 2 22  2456777899999999998754  88777776654

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=94.20  E-value=0.41  Score=39.78  Aligned_cols=105  Identities=8%  Similarity=-0.017  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++.+-+ ++.+.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+++++
T Consensus       173 ~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~i  243 (371)
T 2ovl_A          173 DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI--EEPT--IPD--D---LVGNARIVRESGH  243 (371)
T ss_dssp             SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS--CTT--C---HHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--c---HHHHHHHHhhCCC
Confidence            4456667888888877  78887755 45578999999999999998854  4554  221  2   4567778888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=      +.-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       244 PI~~d------E~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i  285 (371)
T 2ovl_A          244 TIAGG------ENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV  285 (371)
T ss_dssp             CEEEC------TTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHH
T ss_pred             CEEeC------CCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHH
Confidence            99873      33457888888874  4689999988   45544443

>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*

Probab=94.19  E-value=0.63  Score=38.56  Aligned_cols=127  Identities=18%  Similarity=0.120  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccC----------CCCEEEEeCCCCcccccCHHHH
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNS----------PIPVIIYNNTFVTNIDISVDTL  104 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~----------~~pi~lYn~P~~tg~~l~~~~l  104 (198)
                      .++.++...++|+|++.+..|.-...  +++...    .|++.|.+..          +.|+++|-.    |.   ...+
T Consensus       199 ~~~~~~~~i~aGad~i~i~D~~~~~l--sp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~----G~---~~~l  269 (367)
T 1r3s_A          199 LVPYLVGQVVAGAQALQLFESHAGHL--GPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK----DG---HFAL  269 (367)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTGGGS--CHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET----TC---GGGH
T ss_pred             HHHHHHHHHHhCCCEEEEecCccccC--CHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC----Cc---HHHH
Confidence            35556666789999999887743333  366544    4556666544          388888753    22   2356


Q ss_pred             HHHHcCC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHH------------HHhh-cCCCeEEecccc-----c
Q psy9711         105 VKLAHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLL------------SGLL-VGCAGGINALSA-----V  164 (198)
Q Consensus       105 ~~L~~~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~------------~~l~-~G~~G~is~~~n-----~  164 (198)
                      ..+++.+ .++++=.. |+....+.+    +++..+..+.|..++            ..+. .|..|+|-+.++     .
T Consensus       270 ~~l~~~g~d~i~~d~~~dl~~a~~~~----g~~~~l~Gnldp~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~  345 (367)
T 1r3s_A          270 EELAQAGYEVVGLDWTVAPKKARECV----GKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDM  345 (367)
T ss_dssp             HHHTTSSCSEEECCTTSCHHHHHHHH----CSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTC
T ss_pred             HHHHhcCCCEEEeCCCCCHHHHHHHc----CCCeEEEeCCChHHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCC
Confidence            6777765 78888444 887766544    345555544343211            1122 254678866554     3


Q ss_pred             chHHHHHHHHHHHc
Q psy9711         165 LGGPICELYDLAKA  178 (198)
Q Consensus       165 ~P~~~~~l~~~~~~  178 (198)
                      -|+-+..+++++++
T Consensus       346 p~env~a~v~~v~~  359 (367)
T 1r3s_A          346 DPEHVGAFVDAVHK  359 (367)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            46777788877764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.16  E-value=3.9  Score=38.59  Aligned_cols=86  Identities=19%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC-------CCHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK-------MTEDLIYEHFI   76 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~-------~~~~~i~~y~~   76 (198)
                      +.+...+-++.+.+.. +.|+++++ .+.+.++..+.++.+++.|+|++.+-  .|......       .+++.+.+..+
T Consensus       617 ~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~  696 (1025)
T 1gte_A          617 TAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICR  696 (1025)
T ss_dssp             CHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHH
Confidence            3444444445555555 78999987 45678899999999999999999996  35431100       13677888888


Q ss_pred             HHHccCCCCEEEEeCCC
Q psy9711          77 SVADNSPIPVIIYNNTF   93 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~   93 (198)
                      .+-+++++||++=-.|.
T Consensus       697 ~v~~~~~~Pv~vK~~~~  713 (1025)
T 1gte_A          697 WVRQAVQIPFFAKLTPN  713 (1025)
T ss_dssp             HHHHHCSSCEEEEECSC
T ss_pred             HHHHhhCCceEEEeCCC
Confidence            88888899999876653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=94.11  E-value=0.27  Score=42.63  Aligned_cols=117  Identities=17%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEE
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIR  114 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~  114 (198)
                      ..+..+.++.+.++|+|.+.+-.-.   +.  .+.+.+..+.+.+.. ++||+.-|       ..+.+...++.+. .+-
T Consensus       227 ~~~~~~~a~~l~~aG~d~I~id~a~---g~--~~~~~~~v~~i~~~~p~~~Vi~g~-------v~t~e~a~~l~~a-GaD  293 (490)
T 4avf_A          227 GADTGERVAALVAAGVDVVVVDTAH---GH--SKGVIERVRWVKQTFPDVQVIGGN-------IATAEAAKALAEA-GAD  293 (490)
T ss_dssp             STTHHHHHHHHHHTTCSEEEEECSC---CS--BHHHHHHHHHHHHHCTTSEEEEEE-------ECSHHHHHHHHHT-TCS
T ss_pred             ccchHHHHHHHhhcccceEEecccC---Cc--chhHHHHHHHHHHHCCCceEEEee-------eCcHHHHHHHHHc-CCC
Confidence            3567888888999999999886432   22  566778888888887 68999844       4567777777753 344


Q ss_pred             EEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccccc
Q psy9711         115 GVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       115 giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                      ++|.+                  ++..+.++.+.....++.|+.  |.  ...+..++.+|+++++.|.+...
T Consensus       294 ~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~  366 (490)
T 4avf_A          294 AVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAG  366 (490)
T ss_dssp             EEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTT
T ss_pred             EEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhc
Confidence            44431                  122233333211123455554  43  24577889999999998876443

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=94.10  E-value=1.8  Score=36.01  Aligned_cols=137  Identities=11%  Similarity=0.067  Sum_probs=80.4

Q ss_pred             HHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          20 RQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        20 ~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ++.. ..++++-++...+.+  +..+.++.+|+|++.+--...   ..|.  .+.+.+.+..+.|.+.+++||++=..  
T Consensus       139 ~r~~P~~~~ianig~~~~~e--~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~v--  214 (365)
T 3sr7_A          139 KKSRPHLLLATNIGLDKPYQ--AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEV--  214 (365)
T ss_dssp             ------CCEEEEEETTSCHH--HHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEEC--
T ss_pred             hhhCCCCcEEEEeCCCCCHH--HHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEEC--
Confidence            3444 778888776544433  345555678999998874332   1111  12557888899999999999999863  


Q ss_pred             CcccccCHHHHHHHHcCCCEEEEeeC-----C----------------------HHHHHHHHhhcCCCCeEEEe-cC---
Q psy9711          94 VTNIDISVDTLVKLAHHENIRGVKDT-----D----------------------NIKLANMANQTKDLNFSVFA-GS---  142 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~p~i~giK~s-----d----------------------~~~~~~~~~~~~~~~~~v~~-G~---  142 (198)
                        |..++++...++.+. .+.+|..+     .                      ...+.. .+ ...+++.|+. |.   
T Consensus       215 --g~g~s~e~A~~l~~a-Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~-v~-~~~~~ipvia~GGI~~  289 (365)
T 3sr7_A          215 --GFGMDVKTIQTAIDL-GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN-AQ-PLMDKVEILASGGIRH  289 (365)
T ss_dssp             --SSCCCHHHHHHHHHH-TCCEEECCCBC--------------CGGGTTCSCBHHHHHHH-HG-GGTTTSEEEECSSCCS
T ss_pred             --CCCCCHHHHHHHHHc-CCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHH-HH-HhcCCCeEEEeCCCCC
Confidence              445788888888753 12222221     1                      112222 22 2234566653 21   


Q ss_pred             hhhHHHHhhcCCCeEEecccccc
Q psy9711         143 AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       143 d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                      ......++.+|++++..+.+.++
T Consensus       290 g~Dv~KaLalGAdaV~ig~~~l~  312 (365)
T 3sr7_A          290 PLDIIKALVLGAKAVGLSRTMLE  312 (365)
T ss_dssp             HHHHHHHHHHTCSEEEESHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECHHHHH
Confidence            23467889999999998886543

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=94.06  E-value=0.7  Score=37.53  Aligned_cols=138  Identities=9%  Similarity=0.079  Sum_probs=76.3

Q ss_pred             CCeEEEeCCCCcH------HH-HH---HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc---cCCCCEEEEe
Q psy9711          24 KKTIIAGTYCEST------RA-TI---DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD---NSPIPVIIYN   90 (198)
Q Consensus        24 ~~pvi~gv~~~~~------~~-~i---~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~---~~~~pi~lYn   90 (198)
                      ++++|++..+.+.      .+ .+   .-+++|.++|||+|-++--  +.+..++.+.++..+++.+   +.++|+++--
T Consensus        85 ~~glil~l~~~~~l~~~~~~~~l~~~~~~ve~a~~~GAdaV~vlv~--~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~  162 (304)
T 1to3_A           85 SCAMIVAADDFIPGNGIPVDNVVLDKKINAQAVKRDGAKALKLLVL--WRSDEDAQQRLNMVKEFNELCHSNGLLSIIEP  162 (304)
T ss_dssp             TSEEEEECEEEEEETTEEEEEEEECSSCCHHHHHHTTCCEEEEEEE--ECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCcEEEEECCCCCCCCCccchhhccCchhHHHHHHcCCCEEEEEEE--cCCCccHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence            4677777644221      11 33   5677888999999987632  1222125555566655554   4589988754


Q ss_pred             CCCC--cccccCH-HHHHH---HH-cC-CCEEEEeeC-----CHHHHHHHHhh---cCCCCeEEEec-Chh-----hHHH
Q psy9711          91 NTFV--TNIDISV-DTLVK---LA-HH-ENIRGVKDT-----DNIKLANMANQ---TKDLNFSVFAG-SAG-----YLLS  148 (198)
Q Consensus        91 ~P~~--tg~~l~~-~~l~~---L~-~~-p~i~giK~s-----d~~~~~~~~~~---~~~~~~~v~~G-~d~-----~~~~  148 (198)
                      +|..  .+.+-++ +.+.+   .+ +. ..+++++..     +...+.++.+.   ..+-.+.++.| .+.     .+..
T Consensus       163 ~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~  242 (304)
T 1to3_A          163 VVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRV  242 (304)
T ss_dssp             EECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHH
T ss_pred             ECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHH
Confidence            4422  2222344 54443   22 33 357777663     34555555532   13445344444 322     2556


Q ss_pred             HhhcCCCeEEecccc
Q psy9711         149 GLLVGCAGGINALSA  163 (198)
Q Consensus       149 ~l~~G~~G~is~~~n  163 (198)
                      ++..|++|++.|-+-
T Consensus       243 a~~aGa~Gv~vGRaI  257 (304)
T 1to3_A          243 AMEAGASGFLAGRAV  257 (304)
T ss_dssp             HHHTTCCEEEESHHH
T ss_pred             HHHcCCeEEEEehHH
Confidence            678899999988643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=94.06  E-value=0.18  Score=43.82  Aligned_cols=126  Identities=13%  Similarity=0.126  Sum_probs=78.4

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD  102 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~  102 (198)
                      ++.|-++++.  ..+..+.++.+.++|+|.+.+-...   +.  .+.+.+..+.+.+.. ++||+.-|       ..+.+
T Consensus       219 rL~v~aavG~--~~d~~~~a~~l~~aG~d~I~id~a~---g~--~~~~~~~i~~ir~~~p~~~Vi~g~-------v~t~e  284 (496)
T 4fxs_A          219 RLRVGAAVGA--APGNEERVKALVEAGVDVLLIDSSH---GH--SEGVLQRIRETRAAYPHLEIIGGN-------VATAE  284 (496)
T ss_dssp             CBCCEEECCS--SSCCHHHHHHHHHTTCSEEEEECSC---TT--SHHHHHHHHHHHHHCTTCCEEEEE-------ECSHH
T ss_pred             ceeeeeeecc--ccchHHHHHHHHhccCceEEecccc---cc--chHHHHHHHHHHHHCCCceEEEcc-------cCcHH
Confidence            3444455554  3566788888889999999887543   33  677888888888888 79999844       45677


Q ss_pred             HHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEec
Q psy9711         103 TLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINA  160 (198)
Q Consensus       103 ~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~  160 (198)
                      ...++.+. .+-++|.+                  ++..+.++.+.....++.|+.  |-  ...+..++.+|++|++.|
T Consensus       285 ~a~~l~~a-GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG  363 (496)
T 4fxs_A          285 GARALIEA-GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG  363 (496)
T ss_dssp             HHHHHHHH-TCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHh-CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence            77777753 23344421                  122223333211112344554  32  245677899999999988


Q ss_pred             cccc
Q psy9711         161 LSAV  164 (198)
Q Consensus       161 ~~n~  164 (198)
                      ..-.
T Consensus       364 s~f~  367 (496)
T 4fxs_A          364 SMFA  367 (496)
T ss_dssp             TTTT
T ss_pred             HHHh
Confidence            7644

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=94.06  E-value=1.6  Score=33.76  Aligned_cols=141  Identities=16%  Similarity=0.173  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcH--HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCEST--RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~--~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      +.+.-.++++.+.+..++||.++++.+..  ....+.++.+.++|+|++.+.  ..  +   .++..+ +.+.++..+..
T Consensus        64 ~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~--~~--~---~~~~~~-~~~~~~~~g~~  135 (248)
T 1geq_A           64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVV--DL--P---VFHAKE-FTEIAREEGIK  135 (248)
T ss_dssp             CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET--TC--C---GGGHHH-HHHHHHHHTCE
T ss_pred             CHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEEC--CC--C---hhhHHH-HHHHHHHhCCC
Confidence            34444677777776667888877642211  111567888889999999994  11  1   222222 33333444655


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC-C---HHHHHHHHhhcCCCCeEEEecCh--hhHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT-D---NIKLANMANQTKDLNFSVFAGSA--GYLLSG  149 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s-d---~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~  149 (198)
                      +++-=.|.     -+.+.+..+.+ .+.++         |-|.. .   ...+.++. +..+-.+.+-.|-.  +.+...
T Consensus       136 ~~~~i~~~-----t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~-~~~~~pi~~~GGI~~~e~i~~~  209 (248)
T 1geq_A          136 TVFLAAPN-----TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAK-RICRNKVAVGFGVSKREHVVSL  209 (248)
T ss_dssp             EEEEECTT-----CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHH-HHCSSCEEEESCCCSHHHHHHH
T ss_pred             eEEEECCC-----CHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHH-hhcCCCEEEEeecCCHHHHHHH
Confidence            55533332     24566666653 33333         33322 1   23444444 33333344444443  345556


Q ss_pred             hhcCCCeEEeccc
Q psy9711         150 LLVGCAGGINALS  162 (198)
Q Consensus       150 l~~G~~G~is~~~  162 (198)
                      +..|++|++.|.+
T Consensus       210 ~~~Gad~vivGsa  222 (248)
T 1geq_A          210 LKEGANGVVVGSA  222 (248)
T ss_dssp             HHTTCSEEEECHH
T ss_pred             HHcCCCEEEEcHH
Confidence            6899999998875

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=94.02  E-value=2.1  Score=35.07  Aligned_cols=145  Identities=14%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhc-CCeEEEeCC-CCcHHHHHHHHHHHHhcCCCEEEEc--CCC-CcCCCCCH--HHHHHHHHHHHccCCCC
Q psy9711          13 LKIISTLRQET-KKTIIAGTY-CESTRATIDLTQKAAKAGANAALIL--CPY-YFQKKMTE--DLIYEHFISVADNSPIP   85 (198)
Q Consensus        13 ~~l~~~~~~~~-~~pvi~gv~-~~~~~~~i~~a~~a~~~Gad~v~~~--~P~-y~~~~~~~--~~i~~y~~~i~~~~~~p   85 (198)
                      ....+.+.+.. +.|+++.++ ..+.++..   +.++.+|+|++-+.  +|. +..+..++  +++.+..+.+.+.+++|
T Consensus       104 ~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~P  180 (349)
T 1p0k_A          104 RLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVP  180 (349)
T ss_dssp             HHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSC
T ss_pred             ccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCC
Confidence            34444444455 889998887 44555433   44667899997554  232 22221011  12677788888888999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcC--CCEEEE-------------e---------eC---CHHHHHHHHhhcCCCCeEE
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHH--ENIRGV-------------K---------DT---DNIKLANMANQTKDLNFSV  138 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~--p~i~gi-------------K---------~s---d~~~~~~~~~~~~~~~~~v  138 (198)
                      |++=-.    |..++++...++.+.  ..|+-.             +         +.   +...+.++. +.. +++.|
T Consensus       181 v~vK~~----~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~-~~~-~~ipv  254 (349)
T 1p0k_A          181 VIVKEV----GFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIR-SEF-PASTM  254 (349)
T ss_dssp             EEEEEE----SSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHH-HHC-TTSEE
T ss_pred             EEEEec----CCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHH-Hhc-CCCeE
Confidence            998542    234567777777643  322221             2         11   223344443 222 35555


Q ss_pred             EecCh----hhHHHHhhcCCCeEEecccccch
Q psy9711         139 FAGSA----GYLLSGLLVGCAGGINALSAVLG  166 (198)
Q Consensus       139 ~~G~d----~~~~~~l~~G~~G~is~~~n~~P  166 (198)
                      +...+    .....++..|++++..|.+.+..
T Consensus       255 ia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~  286 (349)
T 1p0k_A          255 IASGGLQDALDVAKAIALGASCTGMAGHFLKA  286 (349)
T ss_dssp             EEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence            54222    35667788999999988865543

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=93.95  E-value=0.51  Score=38.05  Aligned_cols=31  Identities=3%  Similarity=0.072  Sum_probs=15.1

Q ss_pred             ccccchHHHHHHHHHHH--cC-CHHHHHHHHHHh
Q psy9711         161 LSAVLGGPICELYDLAK--AG-KWEEAMKLQHRL  191 (198)
Q Consensus       161 ~~n~~P~~~~~l~~~~~--~g-d~~~A~~l~~~~  191 (198)
                      .+|..-+.++.+++...  .| |.++-.++.+.+
T Consensus       246 aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~  279 (298)
T 2cw6_A          246 SGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFI  279 (298)
T ss_dssp             CCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence            45665566655555431  11 455544444443

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=93.95  E-value=0.54  Score=36.48  Aligned_cols=104  Identities=10%  Similarity=0.031  Sum_probs=69.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      ..++.++..++-+.+.+. ++.+.+  .....+.+...+.++.|+++|++.+.+.|.        .+. .+...++++..
T Consensus        58 ~~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--------~~~-~~~l~~~a~~~  127 (262)
T 3p6l_A           58 FNLDAQTQKEIKELAASK-GIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--------LSD-WDLVEKLSKQY  127 (262)
T ss_dssp             TTCCHHHHHHHHHHHHHT-TCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--------GGG-HHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHc-CCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--------HHH-HHHHHHHHHHh
Confidence            346788888877776665 555433  223345677778888999999999988642        222 24555666677


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ++.+.+.|.|..+ ..-+++.+.++.+  .|++--.=|.
T Consensus       128 gv~l~~En~~~~~-~~~~~~~~~~ll~~~~~~~g~~~D~  165 (262)
T 3p6l_A          128 NIKISVHNHPQPS-DYWKPENLLKAISGRSQSLGSCSDV  165 (262)
T ss_dssp             TCEEEEECCSSSS-SSSSHHHHHHHHTTSCTTEEEEEEH
T ss_pred             CCEEEEEeCCCcc-ccCCHHHHHHHHHhCCCceEEEech
Confidence            9999999998632 2237888888884  5776554444

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=93.94  E-value=0.44  Score=38.52  Aligned_cols=51  Identities=2%  Similarity=-0.248  Sum_probs=41.3

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHhcC-CCEEEEcC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCE-STRATIDLTQKAAKAG-ANAALILC   58 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-~~~~~i~~a~~a~~~G-ad~v~~~~   58 (198)
                      +.+...++++.+++.+++||++-++.. +.++..+.++.++++| +|++.+..
T Consensus       144 ~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~  196 (314)
T 2e6f_A          144 DFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN  196 (314)
T ss_dssp             SHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence            667778888888877689999876543 5677888899999999 99998765

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=93.91  E-value=0.29  Score=40.99  Aligned_cols=112  Identities=6%  Similarity=-0.045  Sum_probs=70.6

Q ss_pred             CHHHHHHH----HHHHHHhcC-CeEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           8 TEEEKLKI----ISTLRQETK-KTIIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         8 t~~Er~~l----~~~~~~~~~-~pvi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |.+.|.++    ++.++++++ -||.+=++.          .+.++++++++.+++.|+|.+-+..+.+....  +..-.
T Consensus       211 slenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~--~~~~~  288 (377)
T 2r14_A          211 SIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD--ITYPE  288 (377)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--------CCCT
T ss_pred             chhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCC--CcchH
Confidence            34566554    455555442 288775543          34688999999999999999999886543211  00013


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      ++.+.|.+++++||+. +    .|  ++++...++.+..  ..|++=-.   |+....++.
T Consensus       289 ~~~~~ik~~~~iPvi~-~----Gg--i~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~  342 (377)
T 2r14_A          289 GFREQMRQRFKGGLIY-C----GN--YDAGRAQARLDDNTADAVAFGRPFIANPDLPERFR  342 (377)
T ss_dssp             THHHHHHHHCCSEEEE-E----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHCCCCEEE-E----CC--CCHHHHHHHHHCCCceEEeecHHHHhCchHHHHHH
Confidence            5567777788999886 2    23  3688898888644  45555433   776666655

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=93.91  E-value=0.62  Score=38.34  Aligned_cols=81  Identities=11%  Similarity=-0.040  Sum_probs=61.6

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ..|.+|-.+.++.+++.+   +..|.+++..      .+.+..++.++.+.++|++.+.+.--. ...  +|.++.+.++
T Consensus       129 ~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~  205 (337)
T 3ble_A          129 GKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTL-GVL--SPEETFQGVD  205 (337)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEECTT-CCC--CHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCC-CCc--CHHHHHHHHH
Confidence            456677777777777666   6777766544      346788999999999999988775443 333  3999999999


Q ss_pred             HHHccC-CCCEEEE
Q psy9711          77 SVADNS-PIPVIIY   89 (198)
Q Consensus        77 ~i~~~~-~~pi~lY   89 (198)
                      .+.+.. ++||-++
T Consensus       206 ~l~~~~p~~~i~~H  219 (337)
T 3ble_A          206 SLIQKYPDIHFEFH  219 (337)
T ss_dssp             HHHHHCTTSCEEEE
T ss_pred             HHHHhcCCCeEEEE
Confidence            999988 6898877

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=93.89  E-value=0.51  Score=39.29  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      ..++-.+.++.+++++  ++++.+-+ ++.+.++++++++..++.|++.  +--|.  .+.  +   .+.++.+.+++++
T Consensus       182 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iE~P~--~~~--~---~~~~~~l~~~~~i  252 (382)
T 1rvk_A          182 DVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDW--IEEPM--DEQ--S---LSSYKWLSDNLDI  252 (382)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSE--EECCS--CTT--C---HHHHHHHHHHCSS
T ss_pred             chHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCE--EeCCC--Chh--h---HHHHHHHHhhCCC
Confidence            4555667888888876  78888755 4557899999999999998884  34553  121  2   4567778888899


Q ss_pred             CEEEEeCCCCcccccC-HHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDIS-VDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~-~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=      +.-.+ ++.+.++.+  .-+++-+|-+   .+....++
T Consensus       253 PIa~d------E~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  295 (382)
T 1rvk_A          253 PVVGP------ESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKT  295 (382)
T ss_dssp             CEEEC------SSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred             CEEEe------CCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHH
Confidence            99873      33456 788888874  4689999987   45444443

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=93.86  E-value=0.84  Score=38.02  Aligned_cols=105  Identities=12%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      +.++-.++++.+++++ ++++.+-+ ++.+.+++++.++..++.|++.+  -.|+  .+.  +   .+.++.|.+++++|
T Consensus       173 ~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--~---~~~~~~l~~~~~iP  243 (384)
T 2pgw_A          173 GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFI--EQPT--VSW--S---IPAMAHVREKVGIP  243 (384)
T ss_dssp             CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEE--ECCS--CTT--C---HHHHHHHHHHCSSC
T ss_pred             CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEE--eCCC--Chh--h---HHHHHHHHhhCCCC
Confidence            3455567888888877 68887754 45578999999999999998854  4554  221  2   45677888888999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=      +.-.+++.+.++.+  .-+++.+|-+   .+....++
T Consensus       244 I~~d------e~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  284 (384)
T 2pgw_A          244 IVAD------QAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKA  284 (384)
T ss_dssp             EEES------TTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred             EEEe------CCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHH
Confidence            9873      33457888998884  4689999988   55544443

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=93.76  E-value=0.48  Score=39.75  Aligned_cols=105  Identities=8%  Similarity=0.090  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++.+-+ ++.+.++++++++..++.|++.  +--|.  .+     +-.+.++.|.+++++
T Consensus       171 ~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~--~~-----~~~~~~~~l~~~~~i  241 (397)
T 2qde_A          171 PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSK--IEQPL--PA-----WDLDGMARLRGKVAT  241 (397)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSC--EECCS--CT-----TCHHHHHHHHTTCSS
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCE--EECCC--Ch-----hhHHHHHHHHhhCCC
Confidence            3455567788888876  78887755 4557899999999999999884  33443  11     124677888888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       242 PIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  283 (397)
T 2qde_A          242 PIYADE------SAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRW  283 (397)
T ss_dssp             CEEEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred             CEEEeC------CcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHH
Confidence            998733      3346788888873  5789999988   45444333

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=93.75  E-value=0.8  Score=35.53  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG  115 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g  115 (198)
                      ..+.++.++.+++.|+|.+.+..+......  .....+..+++++.+++|+++-      |.--+++.+.++.+.. +-|
T Consensus        30 ~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~--~~~~~~~i~~i~~~~~iPvi~~------Ggi~~~~~~~~~~~~G-ad~  100 (252)
T 1ka9_F           30 AGDPVEAARAYDEAGADELVFLDISATHEE--RAILLDVVARVAERVFIPLTVG------GGVRSLEDARKLLLSG-ADK  100 (252)
T ss_dssp             TTCHHHHHHHHHHHTCSCEEEEECCSSTTC--HHHHHHHHHHHHTTCCSCEEEE------SSCCSHHHHHHHHHHT-CSE
T ss_pred             cCCHHHHHHHHHHcCCCEEEEEcCCccccC--ccccHHHHHHHHHhCCCCEEEE------CCcCCHHHHHHHHHcC-CCE
Confidence            457889999999999999988866533222  5556778899999999999982      3344677777777542 334


Q ss_pred             EeeC-----CHHHHHHHH
Q psy9711         116 VKDT-----DNIKLANMA  128 (198)
Q Consensus       116 iK~s-----d~~~~~~~~  128 (198)
                      +-..     ++..+.++.
T Consensus       101 V~lg~~~l~~p~~~~~~~  118 (252)
T 1ka9_F          101 VSVNSAAVRRPELIRELA  118 (252)
T ss_dssp             EEECHHHHHCTHHHHHHH
T ss_pred             EEEChHHHhCcHHHHHHH
Confidence            4333     555555555

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=93.75  E-value=0.26  Score=39.63  Aligned_cols=98  Identities=14%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN   96 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg   96 (198)
                      +.-++.++.+..      .|+.++++|+|.+++..-.    +..++   .|-++++.|-+.|++.++.|+++=|.|. .+
T Consensus        34 ~~i~~~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf-gs  106 (281)
T 1oy0_A           34 HKWAMLTAYDYS------TARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPF-GS  106 (281)
T ss_dssp             CCEEEEECCSHH------HHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCT-TS
T ss_pred             CcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCC-Cc
Confidence            344566777643      4566778999999874311    11111   3589999999999999999999999995 45


Q ss_pred             cccCHHHH----HHHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711          97 IDISVDTL----VKLAHHENIRGVKDT-D---NIKLANMA  128 (198)
Q Consensus        97 ~~l~~~~l----~~L~~~p~i~giK~s-d---~~~~~~~~  128 (198)
                      +..+++..    .|+.+--...|+|.+ .   ..+++.+.
T Consensus       107 y~~s~~~a~~na~rl~~eaGa~aVklEdg~e~~~~I~al~  146 (281)
T 1oy0_A          107 YEAGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLT  146 (281)
T ss_dssp             STTCHHHHHHHHHHHHHTTCCSEEEEEBSGGGHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhCCeEEEECCcHHHHHHHHHHH
Confidence            55677653    566666789999987 2   35555554

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=93.73  E-value=0.41  Score=40.13  Aligned_cols=118  Identities=7%  Similarity=-0.035  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.++++.++++.  ++++.+-+ ++.+.++++++++..++.|++.+  -.|.  .+.     -.+.++.|.+++++|
T Consensus       190 ~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P~--~~~-----~~~~~~~l~~~~~iP  260 (393)
T 2og9_A          190 GALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI--EEPL--DAY-----DHEGHAALALQFDTP  260 (393)
T ss_dssp             HHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE--ECCS--CTT-----CHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Ccc-----cHHHHHHHHHhCCCC
Confidence            455567778887776  78887754 45578999999999999998854  3443  111     245677888888999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |+.=.      .-.+++.+.++.+  .-+++.+|-+   .+....++......-++.+..+
T Consensus       261 Ia~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h  315 (393)
T 2og9_A          261 IATGE------MLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPH  315 (393)
T ss_dssp             EEECT------TCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCC
T ss_pred             EEeCC------CcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEecc
Confidence            98733      3347788888874  4689999987   4544444332111234555544

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=93.71  E-value=2.6  Score=35.12  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-CC---CcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-PY---YFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~---y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.+...++++.+.+. +.++++.++...   ..+.++.+.++|+|.+.+.. |.   +..+    +......+.+.+.++
T Consensus       140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~---~~e~a~~~~~agad~i~i~~~~~~~~~~~~----~~~~~~i~~l~~~~~  211 (393)
T 2qr6_A          140 DTELLSERIAQVRDS-GEIVAVRVSPQN---VREIAPIVIKAGADLLVIQGTLISAEHVNT----GGEALNLKEFIGSLD  211 (393)
T ss_dssp             CHHHHHHHHHHHHHT-TSCCEEEECTTT---HHHHHHHHHHTTCSEEEEECSSCCSSCCCC---------CHHHHHHHCS
T ss_pred             CHHHHHHHHHHHhhc-CCeEEEEeCCcc---HHHHHHHHHHCCCCEEEEeCCccccccCCC----cccHHHHHHHHHhcC
Confidence            455555666666554 788877666543   35566777788999987752 31   2222    111223566777789


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHHhh------cCCC-CeEEEe-
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DNIKLANMANQ------TKDL-NFSVFA-  140 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~~~------~~~~-~~~v~~-  140 (198)
                      +||++       |...+++...++.+. .+.+|+.+               ....+.++.+.      ..+. ++.|+. 
T Consensus       212 ~pvi~-------ggi~t~e~a~~~~~~-Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~  283 (393)
T 2qr6_A          212 VPVIA-------GGVNDYTTALHMMRT-GAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIAD  283 (393)
T ss_dssp             SCEEE-------ECCCSHHHHHHHHTT-TCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             CCEEE-------CCcCCHHHHHHHHHc-CCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEE
Confidence            99998       334678887777763 34444433               11222222211      0222 256653 


Q ss_pred             c-C--hhhHHHHhhcCCCeEEecccc
Q psy9711         141 G-S--AGYLLSGLLVGCAGGINALSA  163 (198)
Q Consensus       141 G-~--d~~~~~~l~~G~~G~is~~~n  163 (198)
                      | .  ......++.+|++++..|.+.
T Consensus       284 GGI~~~~dv~kalalGA~~V~iG~~~  309 (393)
T 2qr6_A          284 GSIENSGDVVKAIACGADAVVLGSPL  309 (393)
T ss_dssp             SSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred             CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence            2 2  235678889999999988774

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=93.69  E-value=2.8  Score=35.24  Aligned_cols=148  Identities=17%  Similarity=0.196  Sum_probs=84.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEc-------------------CCC
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALIL-------------------CPY   60 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~-------------------~P~   60 (198)
                      ||+.+.+.+|       +.+.. ..|.+.+... .+.+.+.++++.++++|++++.+.                   ||.
T Consensus       130 s~~~s~~le~-------v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~  202 (392)
T 2nzl_A          130 SSWATSSIEE-------VAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQ  202 (392)
T ss_dssp             CTTCSSCHHH-------HHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTT
T ss_pred             cchHHHHHHH-------HHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccc
Confidence            5555556654       22333 6788888744 456677889999999999999883                   222


Q ss_pred             C-----c------CC----C--C----------CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCE
Q psy9711          61 Y-----F------QK----K--M----------TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENI  113 (198)
Q Consensus        61 y-----~------~~----~--~----------~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i  113 (198)
                      .     .      .|    .  .          +++-..+..+.|.+.+++||++=..       .+++...++.+. .+
T Consensus       203 ~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv-------~~~e~A~~a~~a-Ga  274 (392)
T 2nzl_A          203 LRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI-------LRGDDAREAVKH-GL  274 (392)
T ss_dssp             CCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE-------CCHHHHHHHHHT-TC
T ss_pred             cchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEec-------CCHHHHHHHHHc-CC
Confidence            1     0      00    0  0          0111223356677778899998542       467777666654 23


Q ss_pred             EEEeeC------------CHHHHHHHHhhcCCCCeEEEe-cC---hhhHHHHhhcCCCeEEecccccc
Q psy9711         114 RGVKDT------------DNIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       114 ~giK~s------------d~~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                      -+|..+            ++..+.++.+ ..++++.|+. |.   ......++.+|++++..|.+.++
T Consensus       275 d~I~vs~~ggr~~~~g~~~~~~l~~v~~-av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~  341 (392)
T 2nzl_A          275 NGILVSNHGARQLDGVPATIDVLPEIVE-AVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW  341 (392)
T ss_dssp             CEEEECCGGGTSSTTCCCHHHHHHHHHH-HHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             CEEEeCCCCCCcCCCCcChHHHHHHHHH-HcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence            333332            1233334432 2334566663 21   23567888999999998876544

>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}

Probab=93.58  E-value=1.7  Score=35.33  Aligned_cols=125  Identities=15%  Similarity=0.071  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC----CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS----PIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~----~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      .++.++...++|+|++++.-|.-...+  ++..    ..|++.|.+..    +.|+++|-    .|.   ...+..+++.
T Consensus       181 ~~~~~~~~~~aGad~i~i~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~----~g~---~~~l~~l~~~  251 (338)
T 2eja_A          181 VLAYLKEQIKAGADVVQIFDSWVNNLS--LEDYGEYVYPYVNYLISELKDFSDTPVIYFF----RGS---SSFIDLAVDY  251 (338)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTGGGSC--HHHHHHHTHHHHHHHHHHHHHHCCCCEEEEE----SSH---HHHHHHHTTS
T ss_pred             HHHHHHHHHHhCCCEEEEecCccccCC--HHHHHHHhHHHHHHHHHHHhhcCCCCEEEEc----CCc---HHHHHHHHHc
Confidence            355666667899999999877533333  5544    44557777665    68977763    232   4567777775


Q ss_pred             C-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh--------h----HHHHhh-cCC-CeEEecccc-----cchHHH
Q psy9711         111 E-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG--------Y----LLSGLL-VGC-AGGINALSA-----VLGGPI  169 (198)
Q Consensus       111 p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~--------~----~~~~l~-~G~-~G~is~~~n-----~~P~~~  169 (198)
                      + +++++-.. |+....+.+      +..+..+.|.        .    ....+. .|. .|+|-+.++     .-|+-+
T Consensus       252 g~d~~~~d~~~dl~~~~~~~------~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~  325 (338)
T 2eja_A          252 RADALSVDWSVDIPELFKIY------DKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKV  325 (338)
T ss_dssp             CCSEEECCTTSCHHHHHHHC------CSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHH
T ss_pred             CCCEEEeCCCCCHHHHHHhC------CeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHH
Confidence            4 68888445 887765532      2333333222        1    112233 354 578876664     345777


Q ss_pred             HHHHHHHHc
Q psy9711         170 CELYDLAKA  178 (198)
Q Consensus       170 ~~l~~~~~~  178 (198)
                      ..+++++++
T Consensus       326 ~a~v~~v~~  334 (338)
T 2eja_A          326 KYLVDLVKS  334 (338)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            888887764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=93.55  E-value=0.67  Score=41.53  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=70.2

Q ss_pred             CHHHH----HHHHHHHHHhc--CCeEEEeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcC----CCC---cCCCCC
Q psy9711           8 TEEEK----LKIISTLRQET--KKTIIAGT-------YCESTRATIDLTQKAAKAGANAALILC----PYY---FQKKMT   67 (198)
Q Consensus         8 t~~Er----~~l~~~~~~~~--~~pvi~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~----P~y---~~~~~~   67 (198)
                      |.+.|    .++++.+++++  +.||.+=+       ++.+.++++++++.+++.|+|.+-+..    |.+   .... .
T Consensus       186 s~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~-~  264 (671)
T 1ps9_A          186 DYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPV-P  264 (671)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTS-C
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccC-C
Confidence            34566    44555555555  67776622       245788999999999999999998752    111   0111 0


Q ss_pred             HHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHH
Q psy9711          68 EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANM  127 (198)
Q Consensus        68 ~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~  127 (198)
                      +....++.+.|.+.+++||+.      .|.-.+++...++.+..  ..+++=-.   |+....++
T Consensus       265 ~~~~~~~~~~i~~~~~iPvi~------~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~  323 (671)
T 1ps9_A          265 RGAFSWVTRKLKGHVSLPLVT------TNRINDPQVADDILSRGDADMVSMARPFLADAELLSKA  323 (671)
T ss_dssp             TTTTHHHHHHHTTSCSSCEEE------CSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred             cchHHHHHHHHHHhcCceEEE------eCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHH
Confidence            222356778888888999986      34334788888877543  45554333   55444444

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=93.52  E-value=2.3  Score=33.85  Aligned_cols=131  Identities=11%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      .+.++.+.+.+++||+..-.-. ++.   ++..|.++|||+|++..+..   +  ++++.++++ .+...++.+++=-  
T Consensus       102 ~~~l~~ir~~v~lPvl~kdfii-d~~---qv~~A~~~GAD~VlLi~a~l---~--~~~l~~l~~-~a~~lGl~~lvev--  169 (272)
T 3qja_A          102 LDDLDAVRASVSIPVLRKDFVV-QPY---QIHEARAHGADMLLLIVAAL---E--QSVLVSMLD-RTESLGMTALVEV--  169 (272)
T ss_dssp             HHHHHHHHHHCSSCEEEESCCC-SHH---HHHHHHHTTCSEEEEEGGGS---C--HHHHHHHHH-HHHHTTCEEEEEE--
T ss_pred             HHHHHHHHHhCCCCEEECcccc-CHH---HHHHHHHcCCCEEEEecccC---C--HHHHHHHHH-HHHHCCCcEEEEc--
Confidence            3456666665699998753222 222   24455579999999975532   2  556555444 4455688776421  


Q ss_pred             CCcccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEec--Ch--hhHHHHhhcCCCeEEec
Q psy9711          93 FVTNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFAG--SA--GYLLSGLLVGCAGGINA  160 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G--~d--~~~~~~l~~G~~G~is~  160 (198)
                            -+.+.+.+..+ -..++|+=..       |+..+.++.. ..++++.++.+  -.  +.+......|++|++-|
T Consensus       170 ------~t~ee~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~-~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVG  242 (272)
T 3qja_A          170 ------HTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAP-GLPSSVIRIAESGVRGTADLLAYAGAGADAVLVG  242 (272)
T ss_dssp             ------SSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGG-GSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred             ------CCHHHHHHHHHCCCCEEEECCCcccccccCHHHHHHHHH-hCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence                  13455555444 3578887521       5667777763 44445555543  22  34566678999999988


Q ss_pred             cc
Q psy9711         161 LS  162 (198)
Q Consensus       161 ~~  162 (198)
                      .+
T Consensus       243 sa  244 (272)
T 3qja_A          243 EG  244 (272)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=93.50  E-value=0.33  Score=40.08  Aligned_cols=97  Identities=14%  Similarity=0.146  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.++++.+++++  ++++.+-+ ++.+.++++++++..++.|++.+  --|+  .+.     -.+.++.+.+++++
T Consensus       171 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P~--~~~-----~~~~~~~l~~~~~i  241 (359)
T 1mdl_A          171 ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI--EEPT--LQH-----DYEGHQRIQSKLNV  241 (359)
T ss_dssp             SHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE--ECCS--CTT-----CHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--ECCC--Chh-----hHHHHHHHHHhCCC
Confidence            3455667888888877  78888755 45578999999999999998854  4453  121     24667888888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ||+.=      +.-.+++.+.++.+  .-+++.+|-+
T Consensus       242 PI~~d------e~~~~~~~~~~~i~~~~~d~v~ik~~  272 (359)
T 1mdl_A          242 PVQMG------ENWLGPEEMFKALSIGACRLAMPDAM  272 (359)
T ss_dssp             CEEEC------TTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred             CEEeC------CCCCCHHHHHHHHHcCCCCEEeecch
Confidence            99873      33456888888874  4689999988

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=93.49  E-value=1.2  Score=37.16  Aligned_cols=119  Identities=11%  Similarity=0.140  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++.+=+ ++-+.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+++++
T Consensus       176 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~i  246 (383)
T 3i4k_A          176 DPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELF--EQPT--PAD--D---LETLREITRRTNV  246 (383)
T ss_dssp             CHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE--ESCS--CTT--C---HHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Chh--h---HHHHHHHHhhCCC
Confidence            4566678888888887  68888854 55678999999999999997744  3453  121  2   3557778888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      ||+.=      ..-.+++.+.++.+  .-.++-+|-+   .+....++......-++.+..|
T Consensus       247 PIa~d------E~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~  302 (383)
T 3i4k_A          247 SVMAD------ESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGA  302 (383)
T ss_dssp             EEEES------TTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CEEec------CccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeC
Confidence            99873      23456888888884  5689999988   4555544432111234566544

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=93.47  E-value=0.61  Score=37.91  Aligned_cols=52  Identities=6%  Similarity=-0.043  Sum_probs=24.0

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEE
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIY   89 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lY   89 (198)
                      +.+..++.++.+.++|+|.+.+.--. ...  +|+++.+.++.+.+.. ++|+-++
T Consensus       155 ~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~l~~H  207 (307)
T 1ydo_A          155 PIEQVIRLSEALFEFGISELSLGDTI-GAA--NPAQVETVLEALLARFPANQIALH  207 (307)
T ss_dssp             CHHHHHHHHHHHHHHTCSCEEEECSS-CCC--CHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEcCCC-CCc--CHHHHHHHHHHHHHhCCCCeEEEE
Confidence            34555555555555555544443221 111  2555555555555544 2444443

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=93.46  E-value=0.42  Score=37.68  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----------------CCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQ----------------KKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----------------~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .+..+.++.++.++.+.+.|+|.+.+-.|+-.+                ...+.+...+..+++.+.+++|+++
T Consensus        26 ~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~   99 (262)
T 1rd5_A           26 AGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVL   99 (262)
T ss_dssp             TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence            577778999999999999999999998887421                1123677778888888888999987

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=93.38  E-value=0.48  Score=39.29  Aligned_cols=118  Identities=10%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++.+-+ +..+.+++++.++..++.|++.  +--|.  .+.  +   .+.++.+.+++++|
T Consensus       171 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~--~~~--~---~~~~~~l~~~~~ip  241 (370)
T 1nu5_A          171 PAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVEL--VEQPV--PRA--N---FGALRRLTEQNGVA  241 (370)
T ss_dssp             HHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCE--EECCS--CTT--C---HHHHHHHHHHCSSE
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcce--EeCCC--Ccc--c---HHHHHHHHHhCCCC
Confidence            455567788887776  68887754 4557899999999999999884  44553  121  2   45677888888999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |+.=.      .-.+++.+.++.+.  -+++-+|-+   .+....++......-++.+..|
T Consensus       242 Ia~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~  296 (370)
T 1nu5_A          242 ILADE------SLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGG  296 (370)
T ss_dssp             EEEST------TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC
T ss_pred             EEeCC------CCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEec
Confidence            88733      23577888888853  689999987   5554444432111234555544

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=93.31  E-value=0.36  Score=37.95  Aligned_cols=117  Identities=17%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      |..+++.-+..++.|.+.|||.+-+..++-.-.+.+.+.+.+-.+.|.++++   +++|+ .    ++. |+.+.+.+.+
T Consensus        90 G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIl-E----t~~-Lt~eei~~a~  163 (239)
T 3ngj_A           90 GATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVII-E----CCY-LTNEEKVEVC  163 (239)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEEC-C----GGG-SCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEE-e----cCC-CCHHHHHHHH
Confidence            6667777788999999999999999987732111247788888888888875   55544 2    454 7888887776


Q ss_pred             c---CCCEEEEeeC-C-------HHHHHHHHhhcCCCCeEE--EecCh--hhHHHHhhcCCC
Q psy9711         109 H---HENIRGVKDT-D-------NIKLANMANQTKDLNFSV--FAGSA--GYLLSGLLVGCA  155 (198)
Q Consensus       109 ~---~p~i~giK~s-d-------~~~~~~~~~~~~~~~~~v--~~G~d--~~~~~~l~~G~~  155 (198)
                      +   .-....||-| -       +..+..+. +..++++.|  -.|.-  ......+.+|++
T Consensus       164 ~ia~~aGADfVKTSTGf~~ggAt~~dv~lmr-~~vg~~v~VKasGGIrt~~da~~~i~aGA~  224 (239)
T 3ngj_A          164 KRCVAAGAEYVKTSTGFGTHGATPEDVKLMK-DTVGDKALVKAAGGIRTFDDAMKMINNGAS  224 (239)
T ss_dssp             HHHHHHTCSEEECCCSSSSCCCCHHHHHHHH-HHHGGGSEEEEESSCCSHHHHHHHHHTTEE
T ss_pred             HHHHHHCcCEEECCCCCCCCCCCHHHHHHHH-HhhCCCceEEEeCCCCCHHHHHHHHHhccc
Confidence            4   3478888988 2       23444333 233455544  34433  245677789988

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=93.20  E-value=1.2  Score=33.79  Aligned_cols=86  Identities=15%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CC-HHHHHHHHHHHHccCCCCEEE
Q psy9711          13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK--MT-EDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~-~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .++++.+.+.. +.++++++.  +.++    ++.+.+.|+|.+++.++.|...+  .+ ...-.++.+++.+.+++||+.
T Consensus       107 ~~~i~~~~~~~~~~~v~~~~~--t~~e----~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia  180 (223)
T 1y0e_A          107 DELVSYIRTHAPNVEIMADIA--TVEE----AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA  180 (223)
T ss_dssp             HHHHHHHHHHCTTSEEEEECS--SHHH----HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHHHHhCCCceEEecCC--CHHH----HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE
Confidence            45666666655 667766553  3333    45578899999888777653211  00 223356788888888888876


Q ss_pred             EeCCCCcccccCHHHHHHHHcC
Q psy9711          89 YNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~~  110 (198)
                            .|---+++.+.++.+.
T Consensus       181 ------~GGI~~~~~~~~~~~~  196 (223)
T 1y0e_A          181 ------EGNVITPDMYKRVMDL  196 (223)
T ss_dssp             ------ESSCCSHHHHHHHHHT
T ss_pred             ------ecCCCCHHHHHHHHHc
Confidence                  3322278888888754

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=93.17  E-value=0.46  Score=38.17  Aligned_cols=50  Identities=10%  Similarity=0.164  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +.+.-.++++.+.+.+++||++-++. +..+..+.++.++++|+|++.+..
T Consensus       148 ~~~~~~eii~~v~~~~~~pv~vk~~~-~~~~~~~~a~~l~~~G~d~i~v~~  197 (311)
T 1ep3_A          148 DPEVAAALVKACKAVSKVPLYVKLSP-NVTDIVPIAKAVEAAGADGLTMIN  197 (311)
T ss_dssp             CHHHHHHHHHHHHHHCSSCEEEEECS-CSSCSHHHHHHHHHTTCSEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECC-ChHHHHHHHHHHHHcCCCEEEEeC
Confidence            34445677777776668899886653 233456778899999999999964

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=93.16  E-value=0.32  Score=39.10  Aligned_cols=94  Identities=16%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEE--EcCCCCcC-CC--------CCHHHHHHHHHHHHccCCCCEEE---
Q psy9711          24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAAL--ILCPYYFQ-KK--------MTEDLIYEHFISVADNSPIPVII---   88 (198)
Q Consensus        24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~--~~~P~y~~-~~--------~~~~~i~~y~~~i~~~~~~pi~l---   88 (198)
                      ++-||+|..+. +.+.+++.++.++++|++..+  +.-++|.+ |.        ..-++-.+.++++++..++|++-   
T Consensus        15 ~~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~te~~   94 (280)
T 2qkf_A           15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVH   94 (280)
T ss_dssp             CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEEEecC
Confidence            45688886443 678899999999988755431  11122222 10        01255567788888888999875   


Q ss_pred             --------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 --------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                    |-+|++  ..-..++++++++...-+++|-.
T Consensus        95 d~~~~~~l~~~~d~~kIga~--~~~n~~ll~~~a~~~kPV~lk~G  137 (280)
T 2qkf_A           95 EPHQCQPVAEVCDVIQLPAF--LARQTDLVVAMAKTGNVVNIKKP  137 (280)
T ss_dssp             SGGGHHHHHHHCSEEEECGG--GTTBHHHHHHHHHTCCEEEEECC
T ss_pred             CHHHHHHHHhhCCEEEECcc--cccCHHHHHHHHcCCCcEEEECC
Confidence                          333332  12345588888888888888887

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=93.09  E-value=0.51  Score=37.82  Aligned_cols=96  Identities=22%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCC---CCCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQK---KMTEDLIYEHFISVADNSPIPVIIYNNTFVTN   96 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~---~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg   96 (198)
                      +.-++.++.+..      .|+.++++|+|++++..-.    +..+   ..|-++++.|-+.|++.++.+.++=|.|. .+
T Consensus        29 ~~i~m~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pf-gs  101 (275)
T 3vav_A           29 EKIAMLTCYDAS------FAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPF-GT  101 (275)
T ss_dssp             CCEEEEECCSHH------HHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCT-TS
T ss_pred             CcEEEEeCcCHH------HHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCC-CC
Confidence            334566776643      4566788999999776322    1111   14599999999999999986667789985 23


Q ss_pred             cccCHHHH----HHHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711          97 IDISVDTL----VKLAHHENIRGVKDT-D---NIKLANMA  128 (198)
Q Consensus        97 ~~l~~~~l----~~L~~~p~i~giK~s-d---~~~~~~~~  128 (198)
                      + -+++..    .+|.+. .+.|+|.+ .   .+.++.+.
T Consensus       102 Y-~s~~~a~~~a~rl~ka-Ga~aVklEdg~~~~~~i~~l~  139 (275)
T 3vav_A          102 Y-GTPADAFASAVKLMRA-GAQMVKFEGGEWLAETVRFLV  139 (275)
T ss_dssp             C-SSHHHHHHHHHHHHHT-TCSEEEEECCGGGHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHc-CCCEEEECCchhHHHHHHHHH
Confidence            5 566654    456664 89999988 2   34455544

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=93.09  E-value=0.54  Score=39.50  Aligned_cols=117  Identities=12%  Similarity=0.013  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++++-+ +..+.++++++++..++.|++.+  --|.  .+.     -.+.++.|.+++++||
T Consensus       199 ~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P~--~~~-----~~~~~~~l~~~~~iPI  269 (407)
T 2o56_A          199 RLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYY--EEPV--MPL-----NPAQMKQVADKVNIPL  269 (407)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCE--ECSS--CSS-----SHHHHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--eCCC--Chh-----hHHHHHHHHHhCCCCE
Confidence            34456777777776  78888765 45578999999999999998743  3443  111     2466788888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++......-++.+..+
T Consensus       270 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~g~~~~~h  323 (407)
T 2o56_A          270 AAGE------RIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQIH  323 (407)
T ss_dssp             EECT------TCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCC
T ss_pred             EeCC------CcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeec
Confidence            8733      2336788888884  4689999988   3443333332112234555444

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=93.00  E-value=2  Score=35.88  Aligned_cols=109  Identities=8%  Similarity=-0.015  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHhc-----CCeEEEeCC----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-----KKTIIAGTY----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-----~~pvi~gv~----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |.+.|.+++..+++++     .-||.+=++          ..+.++++++++.+++.|+|.+-+..+.+..+.. +.   
T Consensus       222 slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~-~~---  297 (379)
T 3aty_A          222 TIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQI-GD---  297 (379)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCC-CC---
T ss_pred             ChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCc-cH---
Confidence            5666766555555544     236666222          2356889999999999999999998765432221 22   


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      + .+.|.+.+++||+.     ..|+  +++...++.+..  .+|++=-.   |+....++.
T Consensus       298 ~-~~~ir~~~~iPvi~-----~G~i--t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~  350 (379)
T 3aty_A          298 V-VAWVRGSYSGVKIS-----NLRY--DFEEADQQIREGKVDAVAFGAKFIANPDLVERAQ  350 (379)
T ss_dssp             H-HHHHHTTCCSCEEE-----ESSC--CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             H-HHHHHHHCCCcEEE-----ECCC--CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHH
Confidence            4 66777788999886     2233  899998888644  45555444   776666665

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=92.96  E-value=3.5  Score=34.28  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcC--CCCc-----------CC-C-----------------------
Q psy9711          24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILC--PYYF-----------QK-K-----------------------   65 (198)
Q Consensus        24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~--P~y~-----------~~-~-----------------------   65 (198)
                      ..|++.+... .+.+.+.+.++.++++|++++.+..  |...           .| +                       
T Consensus       132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~  211 (368)
T 2nli_A          132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA  211 (368)
T ss_dssp             TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred             CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence            6778888644 4566778889999999999987763  3210           00 0                       


Q ss_pred             CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHHHhhcCC
Q psy9711          66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANMANQTKD  133 (198)
Q Consensus        66 ~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~~~~~~~  133 (198)
                      .++.-..+..+.|.+.+++||++=..       .+++...++.+.. +.+|..+            ++..+.++.+ ..+
T Consensus       212 ~d~~~~~~~i~~lr~~~~~PvivK~v-------~~~e~a~~a~~~G-ad~I~vs~~ggr~~~~g~~~~~~l~~v~~-~v~  282 (368)
T 2nli_A          212 SKQKISPRDIEEIAGHSGLPVFVKGI-------QHPEDADMAIKRG-ASGIWVSNHGARQLYEAPGSFDTLPAIAE-RVN  282 (368)
T ss_dssp             BCSBCCHHHHHHHHHHSSSCEEEEEE-------CSHHHHHHHHHTT-CSEEEECCGGGTSCSSCCCHHHHHHHHHH-HHT
T ss_pred             cCchhhHHHHHHHHHHcCCCEEEEcC-------CCHHHHHHHHHcC-CCEEEEcCCCcCCCCCCCChHHHHHHHHH-HhC
Confidence            00111122356666667888887532       5667766666542 2222221            2233334432 223


Q ss_pred             CCeEEEe-cC---hhhHHHHhhcCCCeEEecccccc
Q psy9711         134 LNFSVFA-GS---AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       134 ~~~~v~~-G~---d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                      +++.|+. |.   ......++.+|++++..|...++
T Consensus       283 ~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~  318 (368)
T 2nli_A          283 KRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLF  318 (368)
T ss_dssp             TSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            3455543 31   23567788999999998875443

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=92.96  E-value=1.2  Score=35.87  Aligned_cols=45  Identities=18%  Similarity=0.039  Sum_probs=19.3

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +.+..++.++.+.++|++.+.+.--. ...  +|.++.+.++.+.+..
T Consensus       148 ~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~  192 (293)
T 3ewb_X          148 DRAFLIEAVQTAIDAGATVINIPDTV-GYT--NPTEFGQLFQDLRREI  192 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECSS-SCC--CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCC-CCC--CHHHHHHHHHHHHHhc
Confidence            33444455555555555543332221 112  2445555555444443

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=92.92  E-value=0.65  Score=40.47  Aligned_cols=125  Identities=15%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEEeCCCCcccccCHH
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVD  102 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lYn~P~~tg~~l~~~  102 (198)
                      +.+|-++++.  ..+..+.++.+.++|+|.+.+-...   +.  .+.+.+..+.+.+..+ +|++.-|.       .+.+
T Consensus       244 rl~V~aavg~--~~d~~era~aLveaGvd~I~Id~a~---g~--~~~v~~~i~~i~~~~~~~~vi~g~v-------~t~e  309 (511)
T 3usb_A          244 RLLVGAAVGV--TADAMTRIDALVKASVDAIVLDTAH---GH--SQGVIDKVKEVRAKYPSLNIIAGNV-------ATAE  309 (511)
T ss_dssp             CBCCEEEECS--STTHHHHHHHHHHTTCSEEEEECSC---TT--SHHHHHHHHHHHHHCTTSEEEEEEE-------CSHH
T ss_pred             ceeeeeeeee--ccchHHHHHHHHhhccceEEecccc---cc--hhhhhhHHHHHHHhCCCceEEeeee-------ccHH
Confidence            4455555553  3456888888899999999997552   33  6778888888888874 89997553       4677


Q ss_pred             HHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEec
Q psy9711         103 TLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINA  160 (198)
Q Consensus       103 ~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~  160 (198)
                      ...++.+. .+-++|.+                  ++..+.++.+....-++.|+.  |.  ...+..++.+|++|++.|
T Consensus       310 ~a~~~~~a-Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG  388 (511)
T 3usb_A          310 ATKALIEA-GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG  388 (511)
T ss_dssp             HHHHHHHH-TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHh-CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence            77777653 23333321                  222222322111112344553  32  345778899999999988


Q ss_pred             ccc
Q psy9711         161 LSA  163 (198)
Q Consensus       161 ~~n  163 (198)
                      ..-
T Consensus       389 s~~  391 (511)
T 3usb_A          389 SMF  391 (511)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            764

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=92.92  E-value=0.55  Score=39.27  Aligned_cols=117  Identities=11%  Similarity=0.097  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++.+-+ +..+.++++++++..++.|++  .+--|.  .+.     -.+.++.|.+++++||
T Consensus       183 ~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~--~iE~P~--~~~-----~~~~~~~l~~~~~ipI  253 (392)
T 2poz_A          183 ELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDIC--FVEEPC--DPF-----DNGALKVISEQIPLPI  253 (392)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEE--EEECCS--CTT-----CHHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCC--Ccc-----cHHHHHHHHhhCCCCE
Confidence            44457788888776  78888755 455789999999999998765  344553  121     2466788888889999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++.+....-++.+..+
T Consensus       254 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h  307 (392)
T 2poz_A          254 AVGE------RVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAYNMRVAPH  307 (392)
T ss_dssp             EECT------TCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHHTTTCEECCC
T ss_pred             EecC------CcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEecC
Confidence            8733      2345788888884  4689999988   5554444432112234555544

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=92.89  E-value=2.3  Score=32.02  Aligned_cols=57  Identities=16%  Similarity=0.040  Sum_probs=42.9

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      +.|++..+.+.+.++..+.++.+.+.|++.+.+..+.   ++  .   .+..+.+++..+.|+++
T Consensus         6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~---~~--~---~~~i~~i~~~~~~~l~v   62 (212)
T 2v82_A            6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS---PQ--W---EQSIPAIVDAYGDKALI   62 (212)
T ss_dssp             SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS---TT--H---HHHHHHHHHHHTTTSEE
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC---hh--H---HHHHHHHHHhCCCCeEE
Confidence            5688888888899999999999999999999886542   22  2   24455666666777776

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=92.84  E-value=1.1  Score=37.42  Aligned_cols=105  Identities=7%  Similarity=-0.058  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHH----hc-CCeEEEeCCCC----------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           8 TEEEKLKIISTLRQ----ET-KKTIIAGTYCE----------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         8 t~~Er~~l~~~~~~----~~-~~pvi~gv~~~----------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |.+-|.+++..+++    ++ .-||.+=++..          +.++++++++.++++|+|.+-+..+..   .  +    
T Consensus       198 slenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~---~--~----  268 (362)
T 4ab4_A          198 SLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREA---D--D----  268 (362)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCC---T--T----
T ss_pred             chhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCC---C--H----
Confidence            45666655544444    44 22787755543          256789999999999999999987751   1  2    


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      .+.+.|.+.+++||+.      .|. ++++...++.+..  .+|++=-.   |+....++.
T Consensus       269 ~~~~~ik~~~~iPvi~------~Gg-it~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~~  322 (362)
T 4ab4_A          269 SIGPLIKEAFGGPYIV------NER-FDKASANAALASGKADAVAFGVPFIANPDLPARLA  322 (362)
T ss_dssp             CCHHHHHHHHCSCEEE------ESS-CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHCCCCEEE------eCC-CCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence            3455666667889886      232 3899999888644  45555444   777766665

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=92.66  E-value=3.3  Score=33.29  Aligned_cols=188  Identities=11%  Similarity=0.082  Sum_probs=109.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCC---C------CcHHH------------------HHHHHHHHHhcCCCEE
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTY---C------ESTRA------------------TIDLTQKAAKAGANAA   54 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~---~------~~~~~------------------~i~~a~~a~~~Gad~v   54 (198)
                      ++...+|.+++.++++...+. ++++|-..+   .      .+..+                  ..+.++.|.++|++.+
T Consensus        22 ~~~~~~~~e~k~~i~~~L~~~-Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~aG~~~v  100 (302)
T 2ftp_A           22 NEKQPIEVADKIRLVDDLSAA-GLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEV  100 (302)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHT-TCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECCSHHHHHHHHHTTCCEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHc-CcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHhCCcCEE
Confidence            456788999999999988665 666544321   1      01111                  2456678889999999


Q ss_pred             EEcCCCCc-----CCCCCHHHHHHHHHHHHccC---CCCEEE-----EeCCCCcccccCHHHHHHHH----cC-CCEEEE
Q psy9711          55 LILCPYYF-----QKKMTEDLIYEHFISVADNS---PIPVII-----YNNTFVTNIDISVDTLVKLA----HH-ENIRGV  116 (198)
Q Consensus        55 ~~~~P~y~-----~~~~~~~~i~~y~~~i~~~~---~~pi~l-----Yn~P~~tg~~l~~~~l~~L~----~~-p~i~gi  116 (198)
                      ++..+...     +...+.++.++-.+++.+..   ++.+-.     |..|.. + ..+++.+.+++    +. ...+.+
T Consensus       101 ~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~-~-~~~~~~~~~~~~~~~~~G~d~i~l  178 (302)
T 2ftp_A          101 AVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYD-G-DVDPRQVAWVARELQQMGCYEVSL  178 (302)
T ss_dssp             EEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT-B-CCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC-C-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence            98544421     11123777777777776644   566542     344432 2 45677666665    33 578999


Q ss_pred             eeC----CHHHHHHHHhh---cCC-CCeEEEecCh------hhHHHHhhcCCC---eEEe----------cccccchHHH
Q psy9711         117 KDT----DNIKLANMANQ---TKD-LNFSVFAGSA------GYLLSGLLVGCA---GGIN----------ALSAVLGGPI  169 (198)
Q Consensus       117 K~s----d~~~~~~~~~~---~~~-~~~~v~~G~d------~~~~~~l~~G~~---G~is----------~~~n~~P~~~  169 (198)
                      +|+    .+..+.++++.   ..+ -.+. +-|.+      .....++..|++   +.+.          ..+|..-+.+
T Consensus       179 ~DT~G~~~P~~~~~lv~~l~~~~~~~~l~-~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~l  257 (302)
T 2ftp_A          179 GDTIGVGTAGATRRLIEAVASEVPRERLA-GHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDV  257 (302)
T ss_dssp             EESSSCCCHHHHHHHHHHHTTTSCGGGEE-EEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHH
T ss_pred             eCCCCCcCHHHHHHHHHHHHHhCCCCeEE-EEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHH
Confidence            998    66665555432   221 2343 44432      135667888974   4455          3557766777


Q ss_pred             HHHHHHHH--c-CCHHHHHHHHHHhhc
Q psy9711         170 CELYDLAK--A-GKWEEAMKLQHRLVK  193 (198)
Q Consensus       170 ~~l~~~~~--~-gd~~~A~~l~~~~~~  193 (198)
                      +.+.+...  . =|.++-.++.+.+..
T Consensus       258 v~~l~~~g~~~~idl~~l~~~~~~~~~  284 (302)
T 2ftp_A          258 LYLLNGLEIHTGVDMHALVDAGQRICA  284 (302)
T ss_dssp             HHHHHHTTCBCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            66666431  1 256666655555443

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=92.65  E-value=0.84  Score=38.00  Aligned_cols=105  Identities=4%  Similarity=-0.071  Sum_probs=69.0

Q ss_pred             CHHHHHH----HHHHHHHhc-CCeEEEeCCCC----------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           8 TEEEKLK----IISTLRQET-KKTIIAGTYCE----------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         8 t~~Er~~----l~~~~~~~~-~~pvi~gv~~~----------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      |.+-|.+    +++.+++++ .-||.+=++..          +.++++++++.++++|+|.+-+..+.+.     .    
T Consensus       206 slenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~-----~----  276 (361)
T 3gka_A          206 SIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFGG-----D----  276 (361)
T ss_dssp             SHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCST-----T----
T ss_pred             ChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCC-----H----
Confidence            4555654    444555444 22787755442          2577899999999999999999877621     2    


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      .+.+.|.+.+++||+.      .|. ++++...++.+..  .+|++=-.   |+....++.
T Consensus       277 ~~~~~ik~~~~iPvi~------~Gg-it~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~  330 (361)
T 3gka_A          277 AIGQQLKAAFGGPFIV------NEN-FTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFK  330 (361)
T ss_dssp             CCHHHHHHHHCSCEEE------ESS-CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHcCCCEEE------eCC-CCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence            3455666666889886      232 3899999888644  45555443   777666665

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=92.62  E-value=0.91  Score=38.01  Aligned_cols=119  Identities=7%  Similarity=0.068  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH-ccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA-DNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~-~~~~   83 (198)
                      +.++-.+.++.+++++  ++++.+=+ ++-+.+++++.++..++.|++.+  --|.  .+.  +   .+.+++|. ++++
T Consensus       177 ~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~~  247 (389)
T 3ozy_A          177 APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWF--EEPL--SID--D---IEGHRILRAQGTP  247 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE--ESCS--CTT--C---HHHHHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--c---HHHHHHHHhcCCC
Confidence            4566677888888887  78888754 55678999999999999998755  3454  121  1   34578888 8899


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +||+.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++......-++.+..+
T Consensus       248 iPIa~dE------~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h  304 (389)
T 3ozy_A          248 VRIATGE------NLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPH  304 (389)
T ss_dssp             SEEEECT------TCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCC
T ss_pred             CCEEeCC------CCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEec
Confidence            9998732      2346778888874  4689999988   4554444432111234555544

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=92.61  E-value=2.6  Score=32.67  Aligned_cols=101  Identities=12%  Similarity=0.021  Sum_probs=67.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCC-eEEEeCC------C-C-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKK-TIIAGTY------C-E-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY   72 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~-pvi~gv~------~-~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~   72 (198)
                      .++.++..++.+.+.+. ++ ++.++..      + .     +.+...+.++.|+++|+..+.+.|...   +  ++.+.
T Consensus        45 ~~~~~~~~~~~~~~~~~-gl~~~~~h~~~~~~l~s~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~---~--~~~~~  118 (270)
T 3aam_A           45 ALSPAEVEAFRALREAS-GGLPAVIHASYLVNLGAEGELWEKSVASLADDLEKAALLGVEYVVVHPGSG---R--PERVK  118 (270)
T ss_dssp             CCCHHHHHHHHHHHHHT-TCCCEEEECCTTCCTTCSSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBS---C--HHHHH
T ss_pred             CCCHHHHHHHHHHHHHc-CCceEEEecCcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC---C--HHHHH
Confidence            45677777776666554 66 5544432      1 1     123445667788899999988776654   4  58888


Q ss_pred             HHHHHHHcc----CCCCEEEEeCCCCccccc--CHHHHHHHHc-CCCEE
Q psy9711          73 EHFISVADN----SPIPVIIYNNTFVTNIDI--SVDTLVKLAH-HENIR  114 (198)
Q Consensus        73 ~y~~~i~~~----~~~pi~lYn~P~~tg~~l--~~~~l~~L~~-~p~i~  114 (198)
                      +.++.+++.    .++.+.+=|.|.. +..+  +++.+.+|.+ + |+-
T Consensus       119 ~~l~~l~~~a~~~~gv~l~lEn~~~~-~~~~~~~~~~~~~l~~~v-~vg  165 (270)
T 3aam_A          119 EGALKALRLAGVRSRPVLLVENTAGG-GEKVGARFEELAWLVADT-PLQ  165 (270)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEECCCCC-TTBSCCSHHHHHHHHTTS-SCE
T ss_pred             HHHHHHHHhhcccCCCEEEEecCCCC-CCccCCCHHHHHHHHHhC-CEE
Confidence            888888765    3688888888643 2333  8999999984 6 443

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=92.61  E-value=0.74  Score=38.08  Aligned_cols=119  Identities=13%  Similarity=0.124  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHH-HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATI-DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i-~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++-.+.++.++++.  ++++.+-+ ++.+.++++ ++++..++.|++.  +--|.  .+.  +   .+.++.+.++++
T Consensus       167 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~--iEqP~--~~~--d---~~~~~~l~~~~~  237 (369)
T 2p8b_A          167 NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDW--IEQPV--IAD--D---IDAMAHIRSKTD  237 (369)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSC--EECCB--CTT--C---HHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE--EECCC--Ccc--c---HHHHHHHHHhCC
Confidence            3455667788888877  78887755 445678999 9999999988874  34553  221  2   456778888889


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +||+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++......-++.+..|
T Consensus       238 iPI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~  294 (369)
T 2p8b_A          238 LPLMIDE------GLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVG  294 (369)
T ss_dssp             SCEEEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEeCC------CCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEec
Confidence            9998732      2357888888874  5689999987   4544444332111234555544

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=92.55  E-value=1.9  Score=35.88  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIP   85 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~p   85 (198)
                      +|.+|..+.++    .++..+.+.++.  ..+..++++.+.++|+|.+.+-.+.-   .  .+.+.+..+.|-+.. ++|
T Consensus        75 ~s~ee~~~~i~----~~~~~~~~~~g~--~~~~~e~~~~a~~aGvdvI~id~a~G---~--~~~~~e~I~~ir~~~~~~~  143 (361)
T 3r2g_A           75 MTIEENIQEFK----KCKGPVFVSVGC--TENELQRAEALRDAGADFFCVDVAHA---H--AKYVGKTLKSLRQLLGSRC  143 (361)
T ss_dssp             SCHHHHHHHHH----TCCSCCBEEECS--SHHHHHHHHHHHHTTCCEEEEECSCC---S--SHHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHh----hcceEEEEEcCC--CHHHHHHHHHHHHcCCCEEEEeCCCC---C--cHhHHHHHHHHHHhcCCCe
Confidence            56666554332    223233333332  36788899999999999777754431   1  344555666666665 689


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CH--------------HHHHHHHhhcCCCCeEEE-e-cC--hhhH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DN--------------IKLANMANQTKDLNFSVF-A-GS--AGYL  146 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~--------------~~~~~~~~~~~~~~~~v~-~-G~--d~~~  146 (198)
                      |+.=|       ..+++...++.+. .+-+||.+ ..              ..+..+......-+ .|+ . |.  ...+
T Consensus       144 Vi~G~-------V~T~e~A~~a~~a-GaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di  214 (361)
T 3r2g_A          144 IMAGN-------VATYAGADYLASC-GADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDI  214 (361)
T ss_dssp             EEEEE-------ECSHHHHHHHHHT-TCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHH
T ss_pred             EEEcC-------cCCHHHHHHHHHc-CCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHH
Confidence            88733       3567777777653 45556644 10              12222221111111 343 3 33  2457


Q ss_pred             HHHhhcCCCeEEecccccch
Q psy9711         147 LSGLLVGCAGGINALSAVLG  166 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~n~~P  166 (198)
                      ..++.+|+++++.|..-+.+
T Consensus       215 ~kALa~GAd~V~iGr~f~~t  234 (361)
T 3r2g_A          215 VKALAFGADFVMIGGMLAGS  234 (361)
T ss_dssp             HHHHHTTCSEEEESGGGTTB
T ss_pred             HHHHHcCCCEEEEChHHhCC
Confidence            78899999999988764433

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=92.50  E-value=0.46  Score=39.97  Aligned_cols=117  Identities=12%  Similarity=0.060  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++.+-+ +..+.++++++++..++.|++  .+--|.  .+.  +   .+.++.|.+++++||
T Consensus       202 ~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iE~P~--~~~--~---~~~~~~l~~~~~iPI  272 (410)
T 2gl5_A          202 KMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIF--LYEEPI--HPL--N---SDNMQKVSRSTTIPI  272 (410)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEE--EEECSS--CSS--C---HHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--eEECCC--Chh--h---HHHHHHHHhhCCCCE
Confidence            44457788888876  78888865 455789999999999998765  444554  121  2   466788888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++.+....-++.+..+
T Consensus       273 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h  326 (410)
T 2gl5_A          273 ATGE------RSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVH  326 (410)
T ss_dssp             EECT------TCCTTHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCC
T ss_pred             EecC------CcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeec
Confidence            8733      2346788888884  4689999987   3443333332112234555544

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=92.47  E-value=1.6  Score=36.90  Aligned_cols=114  Identities=14%  Similarity=0.148  Sum_probs=70.6

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE--
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV--  116 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi--  116 (198)
                      .++++.+.++|+|.+.+-...   ..  ++.+.+..+.+.+..++||+.-|       ..+++...++.+. ...+.+  
T Consensus       146 ~e~~~~lveaGvdvIvldta~---G~--~~~~~e~I~~ik~~~~i~Vi~g~-------V~t~e~A~~a~~aGAD~I~vG~  213 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAH---GH--SLNIIRTLKEIKSKMNIDVIVGN-------VVTEEATKELIENGADGIKVGI  213 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSC---CS--BHHHHHHHHHHHTTCCCEEEEEE-------ECSHHHHHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHcCCCEEEEeCCC---CC--cccHHHHHHHHHhcCCCeEEEee-------cCCHHHHHHHHHcCCCEEEEeC
Confidence            788899999999988874322   12  56677788888887789998743       3567777777754 222222  


Q ss_pred             --------ee--C----CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccccc
Q psy9711         117 --------KD--T----DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       117 --------K~--s----d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                              ++  .    ++..+.++.......++.|+.  |.  ...+..++.+|++|++.|...+.
T Consensus       214 g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~  280 (400)
T 3ffs_A          214 GPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG  280 (400)
T ss_dssp             ---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTT
T ss_pred             CCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhc
Confidence                    10  0    122233333211123455654  43  24677889999999998876443

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=92.40  E-value=0.64  Score=38.90  Aligned_cols=104  Identities=11%  Similarity=-0.085  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++.+-+ ++-+.+++++.++..++.|++.  +--|.-  +.     -.+.++.|.+++++|
T Consensus       193 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~~--~~-----d~~~~~~l~~~~~iP  263 (392)
T 1tzz_A          193 IEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFW--YEEVGD--PL-----DYALQAALAEFYPGP  263 (392)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSE--EECCSC--TT-----CHHHHHHHTTTCCSC
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCe--ecCCCC--hh-----hHHHHHHHHhhCCCC
Confidence            455567777777766  68887755 4557889999999988888774  344531  11     246678888888899


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc------CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH------HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~------~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=.      .-.+++.+.++.+      .-+++-+|-+   .+....++
T Consensus       264 Ia~dE------~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i  308 (392)
T 1tzz_A          264 MATGE------NLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRT  308 (392)
T ss_dssp             EEECT------TCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHH
T ss_pred             EEECC------CCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHH
Confidence            88733      2346777888774      4688888887   45444333

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=92.39  E-value=0.84  Score=38.30  Aligned_cols=118  Identities=9%  Similarity=0.045  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++.+-+ +..+.+++++.++..++.|++.  +--|.  .+     +-.+.++.|.+++++|
T Consensus       203 ~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~--iEqP~--~~-----~d~~~~~~l~~~~~iP  273 (398)
T 2pp0_A          203 CAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIW--IEEPL--DA-----YDIEGHAQLAAALDTP  273 (398)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSC--EECCS--CT-----TCHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCce--eeCCC--Ch-----hhHHHHHHHHhhCCCC
Confidence            445566777777775  67887754 4557889999999998888874  33443  11     1245667777888899


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++......-++.+..+
T Consensus       274 Ia~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h  328 (398)
T 2pp0_A          274 IATGE------MLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPH  328 (398)
T ss_dssp             EEECT------TCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCC
T ss_pred             EEecC------CcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeec
Confidence            88733      2346788888874  4688888887   4544433332111234555544

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=92.36  E-value=0.69  Score=38.67  Aligned_cols=112  Identities=6%  Similarity=-0.008  Sum_probs=70.8

Q ss_pred             HHHHHHH----HHHHHHhcC-CeEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711           9 EEEKLKI----ISTLRQETK-KTIIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE   73 (198)
Q Consensus         9 ~~Er~~l----~~~~~~~~~-~pvi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~   73 (198)
                      .+.|.++    ++.++++++ -||.+=++.          .+.++++++++.+++.|+|.+-+..+.+.... +...-.+
T Consensus       213 lenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~-~~~~~~~  291 (376)
T 1icp_A          213 LENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAW-EKIECTE  291 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-------CCC
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCC-CccccHH
Confidence            4666444    455555542 288765542          24668899999999999999999877653211 0001124


Q ss_pred             HHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          74 HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        74 y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                      +.+.|.+++++||+. +    .|  ++++...++.+..  .+|++=-.   |+....++.
T Consensus       292 ~~~~vr~~~~iPvi~-~----G~--i~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~  344 (376)
T 1icp_A          292 SLVPMRKAYKGTFIV-A----GG--YDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE  344 (376)
T ss_dssp             CSHHHHHHCCSCEEE-E----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHcCCCEEE-e----CC--CCHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHH
Confidence            456777788899886 1    23  3788888888544  45555444   777766665

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=92.30  E-value=3.1  Score=33.77  Aligned_cols=51  Identities=8%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhc---------CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711           9 EEEKLKIISTLRQET---------KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---------~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      .+.-.++++.+.+.+         ++||++=++. .+.++..+.++.++++|+|++.+..-
T Consensus       187 ~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~  247 (336)
T 1f76_A          187 GEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT  247 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence            334457777777765         7899997764 34568899999999999999999854

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=92.28  E-value=2.9  Score=33.05  Aligned_cols=139  Identities=12%  Similarity=0.093  Sum_probs=84.3

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV   94 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~   94 (198)
                      -++.+.+.+.+||+-==--.+.    -++..|...|||+++++.-.   .+  ++++.+ +.+.|...++.+++=-    
T Consensus        95 ~L~~vr~~v~lPvLrKDFiid~----yQI~eAr~~GADaILLI~a~---L~--~~~l~~-l~~~A~~lGl~~LvEV----  160 (258)
T 4a29_A           95 TLRKIASSVSIPILMSDFIVKE----SQIDDAYNLGADTVLLIVKI---LT--ERELES-LLEYARSYGMEPLILI----  160 (258)
T ss_dssp             HHHHHHTTCSSCEEEESCCCSH----HHHHHHHHHTCSEEEEEGGG---SC--HHHHHH-HHHHHHHTTCCCEEEE----
T ss_pred             HHHHHHHhcCCCEeeccccccH----HHHHHHHHcCCCeeehHHhh---cC--HHHHHH-HHHHHHHHhHHHHHhc----
Confidence            3445554447888653111111    34556677899999998655   33  666555 4456677888776632    


Q ss_pred             cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEeccc
Q psy9711          95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALS  162 (198)
Q Consensus        95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~  162 (198)
                          =+.+.+.+-.+ -+.++||-.-       |+....++.. ..+++..+.  +|..+  ........|++|++-|.+
T Consensus       161 ----h~~~El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~-~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGea  235 (258)
T 4a29_A          161 ----NDENDLDIALRIGARFIGIMSRDFETGEINKENQRKLIS-MIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSS  235 (258)
T ss_dssp             ----SSHHHHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHT-TSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHH
T ss_pred             ----chHHHHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHh-hCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHH
Confidence                13556666554 5799999532       7788878774 455555444  35432  345566789999998876


Q ss_pred             cc-chHHHHHH
Q psy9711         163 AV-LGGPICEL  172 (198)
Q Consensus       163 n~-~P~~~~~l  172 (198)
                      -+ .|+...++
T Consensus       236 lmr~~d~~~~L  246 (258)
T 4a29_A          236 LMRNPEKIKEL  246 (258)
T ss_dssp             HHHCTTHHHHH
T ss_pred             HhCCCcHHHHH
Confidence            33 24443333

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=92.27  E-value=0.63  Score=39.52  Aligned_cols=104  Identities=9%  Similarity=0.071  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-C
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-I   84 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~   84 (198)
                      .++-.+.++.++++.  ++++.+-+ ++.+.++++++++..++.|++.  +--|.  .+     +-.+.++.|.++++ +
T Consensus       212 ~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~--iEqP~--~~-----~d~~~~~~l~~~~~~i  282 (428)
T 3bjs_A          212 ARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGW--LEEPF--AC-----NDFASYREVAKITPLV  282 (428)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSC--EECCS--CT-----TCHHHHHHHTTTCSSS
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCE--EECCC--Cc-----cCHHHHHHHHHhCCCC
Confidence            455567788888876  78887755 4557899999999999999884  34443  11     12567788888888 9


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       283 PIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~i  324 (428)
T 3bjs_A          283 PIAAGE------NHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRI  324 (428)
T ss_dssp             CEEECT------TCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHH
T ss_pred             cEEcCC------CcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHH
Confidence            998733      3356788888884  3578888987   45444333

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=92.25  E-value=1.9  Score=36.33  Aligned_cols=114  Identities=4%  Similarity=0.020  Sum_probs=73.8

Q ss_pred             CHHHHHHH----HHHHHHhc-CCeEEEeCCCC----------cHHHHHHHHHHHHhcC------CCEEEEcCCCCcC---
Q psy9711           8 TEEEKLKI----ISTLRQET-KKTIIAGTYCE----------STRATIDLTQKAAKAG------ANAALILCPYYFQ---   63 (198)
Q Consensus         8 t~~Er~~l----~~~~~~~~-~~pvi~gv~~~----------~~~~~i~~a~~a~~~G------ad~v~~~~P~y~~---   63 (198)
                      |.+.|.++    ++.+++++ ..||.+=++..          +.++++++++.+++.|      +|.+-+..+.+..   
T Consensus       216 slenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~  295 (402)
T 2hsa_B          216 SLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQ  295 (402)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTT
T ss_pred             ChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccC
Confidence            35666554    44444444 34777655432          4578999999999999      9999998775432   


Q ss_pred             -CC--CCHH-HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          64 -KK--MTED-LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        64 -~~--~~~~-~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                       +.  .+.. .-.++.+.|.+.+++||+. +    .|  ++++...++.+..  .+|++=-.   |+....++.
T Consensus       296 ~~~~~~~~~~~~~~~~~~vk~~~~iPvi~-~----G~--i~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~  362 (402)
T 2hsa_B          296 TEAGRLGSEEEEARLMRTLRNAYQGTFIC-S----GG--YTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIK  362 (402)
T ss_dssp             SSSTTTTHHHHHHHHHHHHHHHCSSCEEE-E----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             CccccccCCcchHHHHHHHHHHCCCCEEE-e----CC--CCHHHHHHHHHCCCCceeeecHHHHhCchHHHHHH
Confidence             10  0011 2356677888888999886 2    23  3889999888644  45555443   777776665

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=92.13  E-value=1.4  Score=36.75  Aligned_cols=82  Identities=10%  Similarity=0.006  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ...|.+|-.+.+..+++.+   +..|..+.   +..+.+..++.++.+.++|++.+.+.--. ...  +|.++.+.++.+
T Consensus       119 l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~~~~lv~~l  195 (370)
T 3rmj_A          119 LKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTV-GYS--IPYKTEEFFREL  195 (370)
T ss_dssp             TCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEEECSS-SCC--CHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEecCcc-CCc--CHHHHHHHHHHH
Confidence            3567888888877777777   55566664   55678889999999999999987765433 333  499999999999


Q ss_pred             HccCC----CCEEEE
Q psy9711          79 ADNSP----IPVIIY   89 (198)
Q Consensus        79 ~~~~~----~pi~lY   89 (198)
                      .+..+    +|+-++
T Consensus       196 ~~~~~~~~~~~l~~H  210 (370)
T 3rmj_A          196 IAKTPNGGKVVWSAH  210 (370)
T ss_dssp             HHHSTTGGGSEEEEE
T ss_pred             HHhCCCcCceEEEEE
Confidence            98885    778776

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=92.10  E-value=0.4  Score=38.87  Aligned_cols=63  Identities=10%  Similarity=0.077  Sum_probs=49.1

Q ss_pred             HHHHHHhcCCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          16 ISTLRQETKKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        16 ~~~~~~~~~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ++.+++.+++||++-=|. .+.++++++++.+.++|++++.+..-.|..++  +..+.+-++.+..
T Consensus       215 ~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~d--p~~~~~al~~ivh  278 (295)
T 3glc_A          215 FERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDH--PVAMMKAVQAVVH  278 (295)
T ss_dssp             HHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSS--HHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcC--HHHHHHHHHHHHh
Confidence            344555558898773332 26799999999999999999999988888776  8888888887754

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=92.08  E-value=4.1  Score=33.89  Aligned_cols=139  Identities=17%  Similarity=0.156  Sum_probs=80.3

Q ss_pred             HHHHHhc-CCeEEEeCCCC------cHHHHHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHH-HHHHHHHHHHccCC
Q psy9711          17 STLRQET-KKTIIAGTYCE------STRATIDLTQKAAKAGANAALILCPYY---FQKK--MTED-LIYEHFISVADNSP   83 (198)
Q Consensus        17 ~~~~~~~-~~pvi~gv~~~------~~~~~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~-~i~~y~~~i~~~~~   83 (198)
                      +.+.+.+ ..|++++++..      +.+.+.+.++.   +++++..+--+..   ..|.  .+.. +..+..+.|.+.++
T Consensus       111 ~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~---~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~  187 (368)
T 3vkj_A          111 AIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQM---IEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELS  187 (368)
T ss_dssp             HHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHH---TTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCS
T ss_pred             HHHHHhCcCcceecCcCeeecCCCCCHHHHHHHHHH---hcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcC
Confidence            4455566 89999987773      33333333333   3677777653221   1111  0011 57888999999999


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHH------------------------------HHHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNI------------------------------KLANMA  128 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~------------------------------~~~~~~  128 (198)
                      +||++=-    .|..++++...++.+. .+.+|..+     +..                              .+.++.
T Consensus       188 vPVivK~----vG~g~s~~~A~~l~~a-Gad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~  262 (368)
T 3vkj_A          188 VPIIVKE----SGNGISMETAKLLYSY-GIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVR  262 (368)
T ss_dssp             SCEEEEC----SSSCCCHHHHHHHHHT-TCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHH
T ss_pred             CCEEEEe----CCCCCCHHHHHHHHhC-CCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHH
Confidence            9999954    4556788888877754 24444442     111                              111222


Q ss_pred             hhcCCCCeEEE-ecC---hhhHHHHhhcCCCeEEecccccc
Q psy9711         129 NQTKDLNFSVF-AGS---AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       129 ~~~~~~~~~v~-~G~---d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                       +.. +++.|+ +|.   ......++.+|++++..+...++
T Consensus       263 -~~~-~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~  301 (368)
T 3vkj_A          263 -YSV-PDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLK  301 (368)
T ss_dssp             -HHS-TTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             -HHc-CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence             222 245554 332   23467888999999998875443

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=92.06  E-value=2.7  Score=32.62  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             HHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccccchHHHHHHHH
Q psy9711         122 IKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVLGGPICELYD  174 (198)
Q Consensus       122 ~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~  174 (198)
                      ....++++. ..++..++.|..    ....-....|.||+.-|.+.+-++-+.++.+
T Consensus       161 ~~~~~~ir~-~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~  216 (226)
T 1w0m_A          161 VETVGLVSR-HFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIV  216 (226)
T ss_dssp             HHHHHHHHH-HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHh-ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHH
Confidence            333444433 235566665543    1222335679999999988765544444443

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=91.95  E-value=0.77  Score=38.64  Aligned_cols=95  Identities=8%  Similarity=-0.001  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++.+-+ +..+.++++++++..++.|++.  +--|.  .+     +-.+.++.|.+++++||
T Consensus       194 ~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEeP~--~~-----~d~~~~~~l~~~~~iPI  264 (410)
T 2qq6_A          194 EAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLW--LEEPT--PP-----ENLDALAEVRRSTSTPI  264 (410)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSE--EECCS--CT-----TCHHHHHHHHTTCSSCE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCe--EECCC--Ch-----hhHHHHHHHHhhCCCCE
Confidence            44457778888776  78888765 4557899999999999999874  34453  11     12567788888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +.=.      .-.+++.+.++.+  .-+++-+|-+
T Consensus       265 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~  293 (410)
T 2qq6_A          265 CAGE------NVYTRFDFRELFAKRAVDYVMPDVA  293 (410)
T ss_dssp             EECT------TCCSHHHHHHHHHTTCCSEECCBHH
T ss_pred             EeCC------CcCCHHHHHHHHHcCCCCEEecCcc
Confidence            8733      2347888898884  4689999987

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=91.92  E-value=3.3  Score=33.61  Aligned_cols=154  Identities=11%  Similarity=0.055  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhcCCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-C----CCcCCC---CCHHHHHHHHHHHHccC
Q psy9711          12 KLKIISTLRQETKKT-IIAGTYCESTRATIDLTQKAAKAGANAALILC-P----YYFQKK---MTEDLIYEHFISVADNS   82 (198)
Q Consensus        12 r~~l~~~~~~~~~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-P----~y~~~~---~~~~~i~~y~~~i~~~~   82 (198)
                      +.+-++...+.-+.| ++.++-+..+      ++.++++|++++.+.. -    .+..|+   .|-+++..|-+.|++.+
T Consensus        12 ~a~~lr~ll~~~~~~i~~~~a~D~~s------A~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~   85 (307)
T 3lye_A           12 GAKKLRHLLENTDELIVCPGVYDGLS------ARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLD   85 (307)
T ss_dssp             HHHHHHHHHHHCCCCEEEEEECSHHH------HHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhCCCCeEEEecCcCHHH------HHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccC
Confidence            344445554443334 4668877543      5566678999999842 1    111222   35899999999999987


Q ss_pred             C--CCEEEEeCCCCcccccCHHH----HHHHHcCCCEEEEeeC--C-H------------------HHHHHHHh--hcCC
Q psy9711          83 P--IPVIIYNNTFVTNIDISVDT----LVKLAHHENIRGVKDT--D-N------------------IKLANMAN--QTKD  133 (198)
Q Consensus        83 ~--~pi~lYn~P~~tg~~l~~~~----l~~L~~~p~i~giK~s--d-~------------------~~~~~~~~--~~~~  133 (198)
                      +  +| ++-|.|.-.|   +++.    ++++.+ -.+.|+|.+  . +                  .+++....  +..+
T Consensus        86 ~~~~P-viaD~d~Gyg---~~~~v~~~v~~l~~-aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~  160 (307)
T 3lye_A           86 PFGPP-LIADMDTGYG---GPIMVARTVEHYIR-SGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR  160 (307)
T ss_dssp             TTSCC-EEEECTTCSS---SHHHHHHHHHHHHH-TTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCc-EEEECCCCCC---CHHHHHHHHHHHHH-cCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC
Confidence            6  89 5678885433   3433    333433 579999988  1 1                  12222221  1136


Q ss_pred             CCeEEEecChhhHH-----------HHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711         134 LNFSVFAGSAGYLL-----------SGLLVGCAGGINALSAVLGGPICELYDLAK  177 (198)
Q Consensus       134 ~~~~v~~G~d~~~~-----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~~  177 (198)
                      ++|.|..=.|....           ....+|+|++..-. ---++.+.++.+++.
T Consensus       161 ~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~-~~~~~~~~~i~~~~~  214 (307)
T 3lye_A          161 SDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEG-FRSKEQAAAAVAALA  214 (307)
T ss_dssp             CCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECC-CSCHHHHHHHHHHHT
T ss_pred             CCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecC-CCCHHHHHHHHHHcc
Confidence            78887765554321           12568999886432 124567777777653

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=91.91  E-value=0.73  Score=38.71  Aligned_cols=98  Identities=8%  Similarity=-0.043  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHHHhc--CCeEEEeCC-CC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           7 STEEEKLKIISTLRQET--KKTIIAGTY-CE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~--~~pvi~gv~-~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      .+.++-.+.++.++++.  ++++++-+. +- +.++++++++..++.|++.+  -.|.  .+    ++ .+.++.|.+++
T Consensus       186 ~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~i--EeP~--~~----~d-~~~~~~l~~~~  256 (394)
T 3mkc_A          186 WSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFA--EATL--QH----DD-LSGHAKLVENT  256 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEE--ESCS--CT----TC-HHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEE--ECCC--Cc----hh-HHHHHHHHhhC
Confidence            35677778888888887  889988663 44 78999999999999988754  3454  12    11 35678888889


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ++||+.=.      .-.+++.+.++.+  .-.++.+|-+
T Consensus       257 ~iPIa~dE------~~~~~~~~~~~l~~~~~d~v~~k~~  289 (394)
T 3mkc_A          257 RSRICGAE------MSTTRFEAEEWITKGKVHLLQSDYN  289 (394)
T ss_dssp             SSCBEECT------TCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred             CCCEEeCC------CCCCHHHHHHHHHcCCCCeEecCcc
Confidence            99998732      2345778888884  4589999988

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=91.89  E-value=0.71  Score=38.74  Aligned_cols=105  Identities=6%  Similarity=-0.080  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeCC-CC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGTY-CE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv~-~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++-.+.++.+++++  ++++++-+. +- +.++++++++..++.|++.+  -.|.-  +    ++ .+.++.|.++++
T Consensus       182 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~i--EeP~~--~----~~-~~~~~~l~~~~~  252 (394)
T 3mqt_A          182 SDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFI--EACLQ--H----DD-LIGHQKLAAAIN  252 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEE--ESCSC--T----TC-HHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEE--ECCCC--c----cc-HHHHHHHHhhCC
Confidence            4667778888888887  889988663 44 68999999999999998755  34541  2    11 356788888899


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      +||+.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       253 iPIa~dE------~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i  295 (394)
T 3mqt_A          253 TRLCGAE------MSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRI  295 (394)
T ss_dssp             SEEEECT------TCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHH
T ss_pred             CCEEeCC------CcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHH
Confidence            9998733      2345777888873  5689999988   45544443

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=91.84  E-value=0.68  Score=38.69  Aligned_cols=102  Identities=13%  Similarity=0.066  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++ .++++.+++++  ++++.+-+ ++.+.+++++.++..++.|++.+  -.|.  .+.     -.+.++.+.+++++||
T Consensus       193 ~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~-----d~~~~~~l~~~~~iPI  262 (388)
T 2nql_A          193 GP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA--EAPV--WTE-----DIAGLEKVSKNTDVPI  262 (388)
T ss_dssp             CH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE--ECCS--CTT-----CHHHHHHHHTSCCSCE
T ss_pred             HH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE--ECCC--Chh-----hHHHHHHHHhhCCCCE
Confidence            45 78888888877  78888755 45578999999999999998854  4553  121     2467788888889999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC--CHHHHHHH
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT--DNIKLANM  127 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s--d~~~~~~~  127 (198)
                      +.=.      .-.+++.+.++.+  .-+++.+|-+  .+....++
T Consensus       263 ~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~GGit~~~~i  301 (388)
T 2nql_A          263 AVGE------EWRTHWDMRARIERCRIAIVQPEMGHKGITNFIRI  301 (388)
T ss_dssp             EECT------TCCSHHHHHHHHTTSCCSEECCCHHHHCHHHHHHH
T ss_pred             EEeC------CcCCHHHHHHHHHcCCCCEEEecCCCCCHHHHHHH
Confidence            8733      3347888998884  4688888877  55444433

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=91.83  E-value=1.4  Score=36.81  Aligned_cols=106  Identities=9%  Similarity=0.096  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-C
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-P   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~   83 (198)
                      +.++-.+.++.++++.  ++++.+-+ ++.+.++++++++..++.|.+-.++--|.  .+.  +   .+.++.|.+++ +
T Consensus       172 ~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iEqP~--~~~--~---~~~~~~l~~~~~~  244 (389)
T 2oz8_A          172 DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPI--LRH--D---HDGLRTLRHAVTW  244 (389)
T ss_dssp             SHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEESCB--CTT--C---HHHHHHHHHHCCS
T ss_pred             CHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEeCCC--CCc--C---HHHHHHHHhhCCC
Confidence            3455567888888877  78888755 45578999999999999444434555564  221  1   45677888888 8


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~  128 (198)
                      +||+.=      +.- +++.+.++.+  .-+++.+| .   ...++.++.
T Consensus       245 iPIa~d------E~~-~~~~~~~~i~~~~~d~v~ik-GGit~a~~i~~~A  286 (389)
T 2oz8_A          245 TQINSG------EYL-DLQGKRLLLEAHAADILNVH-GQVTDVMRIGWLA  286 (389)
T ss_dssp             SEEEEC------TTC-CHHHHHHHHHTTCCSEEEEC-SCHHHHHHHHHHH
T ss_pred             CCEEeC------CCC-CHHHHHHHHHcCCCCEEEEC-cCHHHHHHHHHHH
Confidence            998872      334 7888888874  46899999 7   334444444

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=91.81  E-value=0.93  Score=39.11  Aligned_cols=114  Identities=15%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG  115 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g  115 (198)
                      .+..+.++.+.++|+|++.+..-.   ..  .....+..+.+.+.+ ++||++       |...+++...++.+. .+-+
T Consensus       236 ~~~~~~a~~l~~aGvd~v~i~~~~---G~--~~~~~e~i~~i~~~~p~~pvi~-------g~~~t~e~a~~l~~~-G~d~  302 (494)
T 1vrd_A          236 PETMERVEKLVKAGVDVIVIDTAH---GH--SRRVIETLEMIKADYPDLPVVA-------GNVATPEGTEALIKA-GADA  302 (494)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSC---CS--SHHHHHHHHHHHHHCTTSCEEE-------EEECSHHHHHHHHHT-TCSE
T ss_pred             HhHHHHHHHHHHhCCCEEEEEecC---Cc--hHHHHHHHHHHHHHCCCceEEe-------CCcCCHHHHHHHHHc-CCCE
Confidence            556778889999999999985332   12  556778888888888 699987       335678888777764 3555


Q ss_pred             EeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccc
Q psy9711         116 VKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSA  163 (198)
Q Consensus       116 iK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n  163 (198)
                      |+.+                  ....+..+.+.....++.|+.  |.  ......++.+|++++..|.+.
T Consensus       303 I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~  372 (494)
T 1vrd_A          303 VKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIF  372 (494)
T ss_dssp             EEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             EEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHH
Confidence            5542                  111122222111112455554  43  235778899999999977654

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=91.80  E-value=4  Score=33.93  Aligned_cols=53  Identities=9%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHh-------cCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711           8 TEEEKLKIISTLRQE-------TKKTIIAGTYCE-STRATIDLTQKAAKAGANAALILCPY   60 (198)
Q Consensus         8 t~~Er~~l~~~~~~~-------~~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~   60 (198)
                      +++.-.++++.+.++       .++||++=++.. +.++..+.++.++++|+|++.+..-.
T Consensus       197 ~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt  257 (367)
T 3zwt_A          197 GKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTT  257 (367)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCB
T ss_pred             CHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            345556788887764       278999876543 44688999999999999999998654

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=91.78  E-value=1.3  Score=37.03  Aligned_cols=119  Identities=10%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEE-EeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTII-AGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi-~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++-.+.++.++++.  +++++ +=+ ++-+.+++++.++..++.|++...+--|.-  +.  +   .+.++.|.++++
T Consensus       168 ~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~--~~--d---~~~~~~l~~~~~  240 (391)
T 3gd6_A          168 NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAP--RN--D---FDGLYQLRLKTD  240 (391)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSC--TT--C---HHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCC--hh--h---HHHHHHHHHHcC
Confidence            4566677888888886  78888 644 556789999999999999874345556641  21  2   456788888899


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +||   +-     ...+++.+.++.+  .-.++-+|-+   .+....++......-++.+..|
T Consensus       241 iPI---dE-----~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~  295 (391)
T 3gd6_A          241 YPI---SE-----HVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLG  295 (391)
T ss_dssp             SCE---EE-----ECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCc---CC-----CCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEec
Confidence            998   32     2356888888884  5689999988   4554444432111234556544

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=91.77  E-value=3.3  Score=31.92  Aligned_cols=84  Identities=15%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV  116 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi  116 (198)
                      .+.++.++.+++.|+|.+.+..+.-....  .....+..+.+.+.+++|+++-      |.--+++.+.++.+.. ..++
T Consensus        30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~~--~~~~~~~i~~i~~~~~ipvi~~------ggI~~~~~~~~~~~~G-ad~V  100 (253)
T 1thf_D           30 GDPVELGKFYSEIGIDELVFLDITASVEK--RKTMLELVEKVAEQIDIPFTVG------GGIHDFETASELILRG-ADKV  100 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSSSH--HHHHHHHHHHHHTTCCSCEEEE------SSCCSHHHHHHHHHTT-CSEE
T ss_pred             cCHHHHHHHHHHcCCCEEEEECCchhhcC--CcccHHHHHHHHHhCCCCEEEe------CCCCCHHHHHHHHHcC-CCEE
Confidence            46788999999999999988865422222  4445667788998889999983      2334677888777642 3333


Q ss_pred             eeC-----CHHHHHHHHh
Q psy9711         117 KDT-----DNIKLANMAN  129 (198)
Q Consensus       117 K~s-----d~~~~~~~~~  129 (198)
                      =..     ++..+.++.+
T Consensus       101 ~lg~~~l~~p~~~~~~~~  118 (253)
T 1thf_D          101 SINTAAVENPSLITQIAQ  118 (253)
T ss_dssp             EESHHHHHCTHHHHHHHH
T ss_pred             EEChHHHhChHHHHHHHH
Confidence            332     5555666553

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=91.76  E-value=2.7  Score=32.49  Aligned_cols=144  Identities=14%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc-cC--CCCE--
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NS--PIPV--   86 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~-~~--~~pi--   86 (198)
                      ..++++.+.+..++||+++-+-.+.++    ++.+.++|||++++....+..    ++.+.+..+.... ..  .+.+  
T Consensus        62 ~~~~i~~i~~~~~ipvi~~ggI~~~~~----~~~~~~~Gad~V~lg~~~l~~----p~~~~~~~~~~g~~~i~~~~~~~~  133 (253)
T 1thf_D           62 MLELVEKVAEQIDIPFTVGGGIHDFET----ASELILRGADKVSINTAAVEN----PSLITQIAQTFGSQAVVVAIDAKR  133 (253)
T ss_dssp             HHHHHHHHHTTCCSCEEEESSCCSHHH----HHHHHHTTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEEE
T ss_pred             cHHHHHHHHHhCCCCEEEeCCCCCHHH----HHHHHHcCCCEEEEChHHHhC----hHHHHHHHHHcCCCcEEEEEEEEc
Confidence            345556666555899999766655543    555667899999987554432    3334344333321 11  1111  


Q ss_pred             -----EEEeCCCCcccccCH-HHHHHHHcC-CC-EEEE--eeC------CHHHHHHHHhhcCCCCeEEEecCh--hhHHH
Q psy9711          87 -----IIYNNTFVTNIDISV-DTLVKLAHH-EN-IRGV--KDT------DNIKLANMANQTKDLNFSVFAGSA--GYLLS  148 (198)
Q Consensus        87 -----~lYn~P~~tg~~l~~-~~l~~L~~~-p~-i~gi--K~s------d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~  148 (198)
                           .++-.-.......++ +.+.++.+. .. |...  +-.      |+..+.++. +..+-.+..-.|-.  +.+..
T Consensus       134 ~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~-~~~~ipvia~GGI~~~~d~~~  212 (253)
T 1thf_D          134 VDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR-PLTTLPIIASGGAGKMEHFLE  212 (253)
T ss_dssp             ETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHG-GGCCSCEEEESCCCSHHHHHH
T ss_pred             cCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHH-HhcCCCEEEECCCCCHHHHHH
Confidence                 111110000011233 455666554 23 3332  211      566666665 33322333333333  35566


Q ss_pred             HhhcCCCeEEeccccc
Q psy9711         149 GLLVGCAGGINALSAV  164 (198)
Q Consensus       149 ~l~~G~~G~is~~~n~  164 (198)
                      .+..|++|++.+.+-+
T Consensus       213 ~~~~Gadgv~vGsal~  228 (253)
T 1thf_D          213 AFLAGADAALAASVFH  228 (253)
T ss_dssp             HHHTTCSEEEESHHHH
T ss_pred             HHHcCChHHHHHHHHH
Confidence            6789999999887644

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=91.76  E-value=0.19  Score=39.52  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=44.9

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE--Ee-CCCCcc
Q psy9711          31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII--YN-NTFVTN   96 (198)
Q Consensus        31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l--Yn-~P~~tg   96 (198)
                      .+.++.+.+.+.++.+.+.|+|++.+.-    ....+.+.+.+..+++-+ +++|+++  |+ +|-..|
T Consensus        14 ~gDP~~~~t~~~~~~l~~~GaD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G   77 (240)
T 1viz_A           14 KLDPNKDLPDEQLEILCESGTDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPG   77 (240)
T ss_dssp             EECTTSCCCHHHHHHHHTSCCSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSC
T ss_pred             eeCCCccccHHHHHHHHHcCCCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCC
Confidence            4455566667778889999999999986    122358889999999987 8999996  65 655444

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=91.73  E-value=2.2  Score=33.73  Aligned_cols=87  Identities=10%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccCCCCEEE--E
Q psy9711          28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPVII--Y   89 (198)
Q Consensus        28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~~~pi~l--Y   89 (198)
                      ++-.|.++.+.+++.++...+.|||.+=+.-||-.+..                .+-+.+++..+++-.  .+|+++  |
T Consensus        19 yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~--~~Pivlm~Y   96 (252)
T 3tha_A           19 YTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKT--KKALVFMVY   96 (252)
T ss_dssp             EEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCC--SSEEEEECC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhc--CCCEEEEec
Confidence            44579999999999999999999999999999855422                112334444444432  378877  7


Q ss_pred             eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          90 NNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        90 n~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                      -||-.   ....+-+.+-++--.+.|+--.
T Consensus        97 ~N~i~---~~G~e~F~~~~~~aGvdG~Iip  123 (252)
T 3tha_A           97 YNLIF---SYGLEKFVKKAKSLGICALIVP  123 (252)
T ss_dssp             HHHHH---HHCHHHHHHHHHHTTEEEEECT
T ss_pred             cCHHH---HhhHHHHHHHHHHcCCCEEEeC
Confidence            77752   2345666666655677787776

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=91.61  E-value=2.4  Score=31.97  Aligned_cols=108  Identities=11%  Similarity=0.055  Sum_probs=62.7

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccC------HHHHHHHHcCCCE
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS------VDTLVKLAHHENI  113 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~------~~~l~~L~~~p~i  113 (198)
                      .+.++.+.++|||.+-+.+=.       ..+.++.+++.   .  .+.+  +|..+...+.      .+.+.+++..|.+
T Consensus        68 ~~~v~~~~~~Gad~vtvh~~~-------g~~~i~~~~~~---~--gv~v--l~~t~~~~~~~~~~~~v~~~~~~a~~~G~  133 (208)
T 2czd_A           68 RLIARKVFGAGADYVIVHTFV-------GRDSVMAVKEL---G--EIIM--VVEMSHPGALEFINPLTDRFIEVANEIEP  133 (208)
T ss_dssp             HHHHHHHHHTTCSEEEEESTT-------CHHHHHHHHTT---S--EEEE--ECCCCSGGGGTTTGGGHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCCCEEEEeccC-------CHHHHHHHHHh---C--CcEE--EEecCCcchhhHHHHHHHHHHHHHHHhCC
Confidence            456777889999998886421       22334444332   2  2222  3332211111      2334455557899


Q ss_pred             EEEeeC--CHHHHHHHHhhcCCCCeEEEec-Chh---hHHHHhhcCCCeEEeccc
Q psy9711         114 RGVKDT--DNIKLANMANQTKDLNFSVFAG-SAG---YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       114 ~giK~s--d~~~~~~~~~~~~~~~~~v~~G-~d~---~~~~~l~~G~~G~is~~~  162 (198)
                      .|+|.+  .+.++.++. +..+.++.+..| ...   ....++..|+++++.|.+
T Consensus       134 ~G~~~~~~~~~~i~~lr-~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~  187 (208)
T 2czd_A          134 FGVIAPGTRPERIGYIR-DRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRA  187 (208)
T ss_dssp             SEEECCCSSTHHHHHHH-HHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHH
T ss_pred             cEEEECCCChHHHHHHH-HhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEChH
Confidence            999998  566666655 344555555554 321   456778899999998754

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=91.60  E-value=2.3  Score=34.96  Aligned_cols=103  Identities=13%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhc---CCeEEE-----eC--CCC-c-------HHHHHHHHHHH--HhcCCCEEEEcCCCCc-------C
Q psy9711          11 EKLKIISTLRQET---KKTIIA-----GT--YCE-S-------TRATIDLTQKA--AKAGANAALILCPYYF-------Q   63 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~-----gv--~~~-~-------~~~~i~~a~~a--~~~Gad~v~~~~P~y~-------~   63 (198)
                      ++.+.++.+.+++   ++|+++     +-  +.. +       .+-...-+|.+  .+.|+|-+=+--|.=.       .
T Consensus       144 ~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~  223 (332)
T 3iv3_A          144 QKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAE  223 (332)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCS
T ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhccccc
Confidence            5677888888887   999877     22  122 2       23356777777  5779998888766411       0


Q ss_pred             --CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH----cCC-CEEEEeeC
Q psy9711          64 --KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HHE-NIRGVKDT  119 (198)
Q Consensus        64 --~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~p-~i~giK~s  119 (198)
                        .-+|+++..++|+++.+++++|+++=-    .|.  +.+.+.+..    +.. .+.|+=..
T Consensus       224 ~~~~y~~~ea~~~f~~~~~a~~~P~v~ls----gG~--~~~~fl~~v~~A~~aGa~f~Gv~~G  280 (332)
T 3iv3_A          224 GEVVYSKEEAAQAFREQEASTDLPYIYLS----AGV--SAELFQETLVFAHKAGAKFNGVLCG  280 (332)
T ss_dssp             SCCCBCHHHHHHHHHHHHHTCSSCEEEEC----TTC--CHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred             ccccccHHHHHHHHHHHHhcCCCCEEEEC----CCC--CHHHHHHHHHHHHHcCCCcceEEee
Confidence              112489999999999999999987522    232  455554443    122 44566555

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=91.56  E-value=0.69  Score=37.18  Aligned_cols=138  Identities=14%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             HHHHHHHhc-CCeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCC-----------CCCHHHHHHHHHHHHcc
Q psy9711          15 IISTLRQET-KKTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQK-----------KMTEDLIYEHFISVADN   81 (198)
Q Consensus        15 l~~~~~~~~-~~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~-----------~~~~~~i~~y~~~i~~~   81 (198)
                      +.+.++-.+ ++||++|+...+. ...=...+..+++|+.++ +-.|....-           .++-++..+..+. |..
T Consensus        84 ~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~-A~~  161 (286)
T 2p10_A           84 MAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAE-AHK  161 (286)
T ss_dssp             HHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHH-HHH
T ss_pred             HHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHH-HHH
Confidence            333333444 8999999866553 344444588889999999 666622111           1224444444433 233


Q ss_pred             CCCCEEEEeCCCCcccccCHHHHHHHHc-CC------------CEEEEeeC----C-HHHHHHHHh--hcCCCCeEEEec
Q psy9711          82 SPIPVIIYNNTFVTNIDISVDTLVKLAH-HE------------NIRGVKDT----D-NIKLANMAN--QTKDLNFSVFAG  141 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p------------~i~giK~s----d-~~~~~~~~~--~~~~~~~~v~~G  141 (198)
                      .++--+.|        ..+++.-+.+++ -|            ..+|.+.+    + ++.++++.+  +..+|++.|+++
T Consensus       162 ~gL~Ti~~--------v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~  233 (286)
T 2p10_A          162 LDLLTTPY--------VFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSH  233 (286)
T ss_dssp             TTCEECCE--------ECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEE
T ss_pred             CCCeEEEe--------cCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEec
Confidence            45444433        345666666653 23            35555554    3 334444332  235688888876


Q ss_pred             C-----hhhHHHHhhc--CCCeEEeccc
Q psy9711         142 S-----AGYLLSGLLV--GCAGGINALS  162 (198)
Q Consensus       142 ~-----d~~~~~~l~~--G~~G~is~~~  162 (198)
                      -     .+.....+..  |++|++.+.+
T Consensus       234 gGpIstpeDv~~~l~~t~G~~G~~gASs  261 (286)
T 2p10_A          234 GGPIANPEDARFILDSCQGCHGFYGASS  261 (286)
T ss_dssp             STTCCSHHHHHHHHHHCTTCCEEEESHH
T ss_pred             CCCCCCHHHHHHHHhcCCCccEEEeehh
Confidence            5     2234455666  9999998766

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=91.53  E-value=3  Score=34.00  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           9 EEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .++-.+.++.+.+.. ++++.+-+ ++-+.++++++++..++.|++...+--|.  .+.  +   .+.++.+.+++++||
T Consensus       166 ~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE~P~--~~~--~---~~~~~~l~~~~~ipi  238 (345)
T 2zad_A          166 LKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPV--RRE--D---IEGLKFVRFHSPFPV  238 (345)
T ss_dssp             HHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEECCS--CTT--C---HHHHHHHHHHSSSCE
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeeeCCC--Ccc--c---HHHHHHHHHhCCCCE
Confidence            444455666666665 67776644 34467888888888888877722344553  111  1   355666777778888


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +.=.      .-.+++.+.++.+  .-+++-+|-+
T Consensus       239 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~  267 (345)
T 2zad_A          239 AADE------SARTKFDVMRLVKEEAVDYVNIKLM  267 (345)
T ss_dssp             EEST------TCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             EEeC------CcCCHHHHHHHHHhCCCCEEEEecc
Confidence            7632      2336777777763  4577888766

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=91.52  E-value=1.2  Score=37.50  Aligned_cols=117  Identities=9%  Similarity=0.007  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.++++.  ++++++-+ ++-+.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+++++||
T Consensus       162 ~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~--~~~--d---~~~~~~l~~~~~iPI  232 (405)
T 3rr1_A          162 DAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFI--EEPV--LAE--Q---AETYARLAAHTHLPI  232 (405)
T ss_dssp             HHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCE--ECSS--CCS--S---THHHHHHHTTCSSCE
T ss_pred             HHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--c---HHHHHHHHhcCCCCE
Confidence            44467788888877  78888755 45678999999999999987754  3443  111  1   356788888999999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      .-.++..+.++.+  .-.++-+|-+   -+....++......-++.+..+
T Consensus       233 a~dE------~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h  286 (405)
T 3rr1_A          233 AAGE------RMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPH  286 (405)
T ss_dssp             EECT------TCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCB
T ss_pred             EecC------CcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeC
Confidence            8732      3457788888874  4689999988   3443333332111234555544

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=91.51  E-value=2.4  Score=32.80  Aligned_cols=54  Identities=11%  Similarity=0.091  Sum_probs=30.9

Q ss_pred             HHHHHHHhhcCCCCeEEEecCh---h-hHHHHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711         122 IKLANMANQTKDLNFSVFAGSA---G-YLLSGLLVGCAGGINALSAVLGGPICELYDLA  176 (198)
Q Consensus       122 ~~~~~~~~~~~~~~~~v~~G~d---~-~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~  176 (198)
                      ....++++. ..++..++.|..   . ...-....|.||+.-|.+.+-++-+.++.+.+
T Consensus       164 ~~~~~~ir~-~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l  221 (225)
T 1hg3_A          164 TNTVELVKK-VNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDL  221 (225)
T ss_dssp             HHHHHHHHH-HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHh-ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHH
Confidence            344444533 235566665543   1 22233467999999998877665555555443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=91.50  E-value=1.9  Score=37.09  Aligned_cols=115  Identities=14%  Similarity=0.132  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG  115 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g  115 (198)
                      ....+.++.+.++|+|++.+..-   ...  .+...+..+.+.+.. ++|++       .|...+.+...++.+.. +.+
T Consensus       232 ~~~~~~a~~l~~~G~d~ivi~~a---~g~--~~~~~~~i~~l~~~~p~~pvi-------~G~v~t~~~a~~~~~~G-ad~  298 (491)
T 1zfj_A          232 SDTFERAEALFEAGADAIVIDTA---HGH--SAGVLRKIAEIRAHFPNRTLI-------AGNIATAEGARALYDAG-VDV  298 (491)
T ss_dssp             TTHHHHHHHHHHHTCSEEEECCS---CTT--CHHHHHHHHHHHHHCSSSCEE-------EEEECSHHHHHHHHHTT-CSE
T ss_pred             hhHHHHHHHHHHcCCCeEEEeee---cCc--chhHHHHHHHHHHHCCCCcEe-------CCCccCHHHHHHHHHcC-CCE
Confidence            44577888889999999998752   112  456778888888888 79998       34445677777777532 222


Q ss_pred             EeeC------------------CHHHHHHHHhhcCCCCeEEEe-c---ChhhHHHHhhcCCCeEEeccccc
Q psy9711         116 VKDT------------------DNIKLANMANQTKDLNFSVFA-G---SAGYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       116 iK~s------------------d~~~~~~~~~~~~~~~~~v~~-G---~d~~~~~~l~~G~~G~is~~~n~  164 (198)
                      ++.+                  +...+.++.......++.|+. |   ....+..++.+|+++++.|.+..
T Consensus       299 I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~  369 (491)
T 1zfj_A          299 VKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFA  369 (491)
T ss_dssp             EEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred             EEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhh
Confidence            2211                  223333333111112455554 2   23457788899999999887754

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=91.48  E-value=0.99  Score=37.26  Aligned_cols=102  Identities=7%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             CHHHHHH----HHHHHHHhc--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHH
Q psy9711           8 TEEEKLK----IISTLRQET--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIY   72 (198)
Q Consensus         8 t~~Er~~----l~~~~~~~~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~   72 (198)
                      |.+.|.+    +++.+++++  +.||.+=++       +.+.++++++++.++++ +|.+-+....+....  ..+..-.
T Consensus       188 slenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~  266 (343)
T 3kru_A          188 SIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQV  266 (343)
T ss_dssp             SHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTH
T ss_pred             chHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceee
Confidence            4556654    455555555  568877443       34589999999999999 999999644332110  0011224


Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEE
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGV  116 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~gi  116 (198)
                      ++.+.|.+.+++||+.      .|.--+++...++.+..  .++++
T Consensus       267 ~~~~~ir~~~~iPVi~------~Ggi~t~e~Ae~~l~~G~aD~V~i  306 (343)
T 3kru_A          267 KYAETIKKRCNIKTSA------VGLITTQELAEEILSNERADLVAL  306 (343)
T ss_dssp             HHHHHHHHHHTCEEEE------ESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred             hHHHHHHHhcCcccce------eeeeeHHHHHHHHHhchhhHHHHH
Confidence            5556666677888876      34334678777776433  34444

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=91.46  E-value=1.2  Score=37.31  Aligned_cols=104  Identities=9%  Similarity=-0.005  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCC--cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc-cCC
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCE--STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NSP   83 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~--~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~-~~~   83 (198)
                      ++-.+.++.+++++  ++++.+-+ ++.  +.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+ +++
T Consensus       177 ~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~~  247 (401)
T 2hzg_A          177 AADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWL--EEPF--DAG--A---LAAHAALAGRGAR  247 (401)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEE--ECCS--CTT--C---HHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--C---HHHHHHHHhhCCC
Confidence            44567788888877  78888865 445  78999999999999998853  4554  121  2   466778888 889


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~  128 (198)
                      +||+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++.
T Consensus       248 iPI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~  291 (401)
T 2hzg_A          248 VRIAGGE------AAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVA  291 (401)
T ss_dssp             SEEEECT------TCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHH
T ss_pred             CCEEecC------CcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHH
Confidence            9998733      3356788888883  5789999988   555444443

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=91.45  E-value=2.4  Score=35.15  Aligned_cols=62  Identities=23%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             CeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          25 KTIIAGTYCE-STRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        25 ~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .-||+|.+.. +.+.+++.++.++++|++++-..      .|+-|+.-  .++-++.++++++..++|++-
T Consensus       107 ~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~gl--g~egl~~l~~~~~e~Gl~~~t  175 (350)
T 1vr6_A          107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGL--GEKGLEYLREAADKYGMYVVT  175 (350)
T ss_dssp             EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCC--THHHHHHHHHHHHHHTCEEEE
T ss_pred             eEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCC--CHHHHHHHHHHHHHcCCcEEE
Confidence            4478886554 67889999999999999986443      23222221  255667888889999999985

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=91.43  E-value=0.43  Score=38.62  Aligned_cols=94  Identities=12%  Similarity=0.143  Sum_probs=58.7

Q ss_pred             CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEE--EcCCCCcC-CC-----C---CHHHHHHHHHHHHccCCCCEEE---
Q psy9711          24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAAL--ILCPYYFQ-KK-----M---TEDLIYEHFISVADNSPIPVII---   88 (198)
Q Consensus        24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~--~~~P~y~~-~~-----~---~~~~i~~y~~~i~~~~~~pi~l---   88 (198)
                      ++-||+|..+ .+.+.+++.++.++++|++.+.  +.-.+|.+ |.     .   .-++-.+.++++++..++|++-   
T Consensus        18 ~~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp~~te~~   97 (292)
T 1o60_A           18 PFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVKIITDVH   97 (292)
T ss_dssp             CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEECC
T ss_pred             ceEEEEecCCccCHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCcEEEecC
Confidence            4568888643 3678889999999887754321  11222332 11     0   1245566778888888888875   


Q ss_pred             --------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 --------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                    |-+|+  +..-..++++++++...-+++|-.
T Consensus        98 d~~~~~~l~~~vd~~kIgA--~~~~n~~Ll~~~a~~~kPV~lk~G  140 (292)
T 1o60_A           98 EIYQCQPVADVVDIIQLPA--FLARQTDLVEAMAKTGAVINVKKP  140 (292)
T ss_dssp             SGGGHHHHHTTCSEEEECG--GGTTCHHHHHHHHHTTCEEEEECC
T ss_pred             CHHHHHHHHhcCCEEEECc--ccccCHHHHHHHHcCCCcEEEeCC
Confidence                          22232  112345688888888888888887

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=91.43  E-value=0.69  Score=36.70  Aligned_cols=65  Identities=11%  Similarity=0.072  Sum_probs=49.5

Q ss_pred             HHHHHHHHhc-CCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          14 KIISTLRQET-KKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        14 ~l~~~~~~~~-~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +.++.+++.+ .+||++  |+...+.+++++.++.+.++|++++.+..-.|..++  +....+-++.+.+
T Consensus       185 e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~d--p~~~~~~l~~~v~  252 (263)
T 1w8s_A          185 KTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRD--ALKFARALAELVY  252 (263)
T ss_dssp             HHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTT--HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcC--HHHHHHHHHHHHh
Confidence            3345555555 448766  344337999999999999999999999988888776  8888888877764

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=91.39  E-value=2.1  Score=35.49  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+=  -|.-      +++ .+.++.|.+++++|
T Consensus       167 ~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE--qP~~------~~~-~~~~~~l~~~~~iP  237 (368)
T 3q45_A          167 KELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCE--EPVS------RNL-YTALPKIRQACRIP  237 (368)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEE--CCBC------GGG-GGGHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEE--CCCC------hhH-HHHHHHHHhhCCCC
Confidence            456677888888877  78888754 556789999999999998876543  3431      222 35577888889999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       238 Ia~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i  278 (368)
T 3q45_A          238 IMADE------SCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNI  278 (368)
T ss_dssp             EEEST------TCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHH
T ss_pred             EEEcC------CcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHH
Confidence            98732      2356888888884  4689999988   45444443

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=91.27  E-value=2.8  Score=34.50  Aligned_cols=107  Identities=11%  Similarity=0.157  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++.+=+ ++-+.++++++++..++.+.+-.++--|.  .+.  +   .+.++.+.+++++
T Consensus       167 ~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iEqP~--~~~--d---~~~~~~l~~~~~i  239 (366)
T 1tkk_A          167 DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPV--HKD--D---LAGLKKVTDATDT  239 (366)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEECCS--CTT--C---HHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEECCC--Ccc--c---HHHHHHHHhhCCC
Confidence            3455567777777776  67887755 44578899999999888333334555664  222  2   3556777777889


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       240 pIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  281 (366)
T 1tkk_A          240 PIMADE------SVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKI  281 (366)
T ss_dssp             CEEECT------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred             CEEEcC------CCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHH
Confidence            988733      2356778888873  5688999987   45444333

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=91.04  E-value=1.2  Score=35.43  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             CCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHcc-CCC
Q psy9711          24 KKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADN-SPI   84 (198)
Q Consensus        24 ~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~-~~~   84 (198)
                      |..++.  -.|.++.+.+++.++..++.|||.+-+.-|+-.+.-                .+-+.+.+..+++-+. +++
T Consensus        17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~   96 (267)
T 3vnd_A           17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDM   96 (267)
T ss_dssp             CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence            544433  468899999999999999999999999988743321                1123445666666655 788


Q ss_pred             CEEE--EeCC
Q psy9711          85 PVII--YNNT   92 (198)
Q Consensus        85 pi~l--Yn~P   92 (198)
                      |+++  |-+|
T Consensus        97 Pivlm~Y~np  106 (267)
T 3vnd_A           97 PIGLLLYANL  106 (267)
T ss_dssp             CEEEEECHHH
T ss_pred             CEEEEecCcH
Confidence            9877  6555

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=91.01  E-value=3.8  Score=30.55  Aligned_cols=98  Identities=14%  Similarity=0.086  Sum_probs=56.1

Q ss_pred             HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--
Q psy9711          42 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--  119 (198)
Q Consensus        42 ~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--  119 (198)
                      .++.+.+.|+|.+ + .|.+      +.++.++-    ...++|++.       |. .+++.+.+..+. .+..+|..  
T Consensus        75 ~~~~a~~~Gad~i-v-~~~~------~~~~~~~~----~~~g~~vi~-------g~-~t~~e~~~a~~~-Gad~vk~~~~  133 (205)
T 1wa3_A           75 QCRKAVESGAEFI-V-SPHL------DEEISQFC----KEKGVFYMP-------GV-MTPTELVKAMKL-GHTILKLFPG  133 (205)
T ss_dssp             HHHHHHHHTCSEE-E-CSSC------CHHHHHHH----HHHTCEEEC-------EE-CSHHHHHHHHHT-TCCEEEETTH
T ss_pred             HHHHHHHcCCCEE-E-cCCC------CHHHHHHH----HHcCCcEEC-------Cc-CCHHHHHHHHHc-CCCEEEEcCc
Confidence            4677788999999 4 4543      23444443    446888874       21 245545544433 34455643  


Q ss_pred             ---CHHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCeEEeccc
Q psy9711         120 ---DNIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       120 ---d~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G~is~~~  162 (198)
                         .+..+.++. ... +++.++  .|-. ..+...+..|++|+..|.+
T Consensus       134 ~~~g~~~~~~l~-~~~-~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~  180 (205)
T 1wa3_A          134 EVVGPQFVKAMK-GPF-PNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSA  180 (205)
T ss_dssp             HHHHHHHHHHHH-TTC-TTCEEEEBSSCCTTTHHHHHHHTCSCEEECHH
T ss_pred             cccCHHHHHHHH-HhC-CCCcEEEcCCCCHHHHHHHHHCCCCEEEECcc
Confidence               234444444 222 244444  3433 4566778899999998865

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=91.00  E-value=3.7  Score=33.83  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      .++-.+.++.++++.  ++++.+=+ ++.+.++++++++.. ++.|+   .+--|..   +      .+.++.+.+++++
T Consensus       173 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i---~iE~P~~---~------~~~~~~l~~~~~i  240 (371)
T 2ps2_A          173 PVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF---ALEAPCA---T------WRECISLRRKTDI  240 (371)
T ss_dssp             HHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC---EEECCBS---S------HHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC---cCcCCcC---C------HHHHHHHHhhCCC
Confidence            455567777777766  67887755 445788999999998 88876   4455542   2      3567888888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       241 PI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  282 (371)
T 2ps2_A          241 PIIYDE------LATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQ  282 (371)
T ss_dssp             CEEEST------TCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHH
T ss_pred             CEEeCC------CcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHH
Confidence            988733      3356788888863  4689999988   55544443

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=90.92  E-value=1.7  Score=35.80  Aligned_cols=117  Identities=9%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++  .+--|.-  +.  +   .+.++.|.+++++||
T Consensus       167 ~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~--~iEqP~~--~~--d---~~~~~~l~~~~~iPI  237 (354)
T 3jva_A          167 EADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVK--RR--D---LEGLKYVTSQVNTTI  237 (354)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEE--EEECCSC--TT--C---HHHHHHHHHHCSSEE
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCCC--hh--h---HHHHHHHHHhCCCCE
Confidence            45566778887776  78888754 455788899999988887644  3445541  21  1   355678888889999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      .-.+++.+.++.+  ...++-+|-+   .+....++......-++.+..|
T Consensus       238 a~dE------~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~  291 (354)
T 3jva_A          238 MADE------SCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIG  291 (354)
T ss_dssp             EEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EEcC------CcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEec
Confidence            8732      2456778888873  5689999987   4544444432111234555443

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=90.91  E-value=2.7  Score=34.83  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=67.5

Q ss_pred             CeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEc--------CCCC--cCCC-------------CCHHHHHHHHHHH
Q psy9711          25 KTIIAGTYC---ESTRATIDLTQKAAKAGANAALIL--------CPYY--FQKK-------------MTEDLIYEHFISV   78 (198)
Q Consensus        25 ~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~--------~P~y--~~~~-------------~~~~~i~~y~~~i   78 (198)
                      .-||+++|.   .|.+.+.++++.|+++|||++=..        .|+.  +...             ....+-.....+.
T Consensus        20 ~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~   99 (349)
T 2wqp_A           20 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY   99 (349)
T ss_dssp             CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred             eEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHH
Confidence            558887763   478999999999999999999876        6654  3310             0134555667777


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEEecCh
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFAGSA  143 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~~G~d  143 (198)
                      |+..+++++-=        .++.+.+..|.++ ++-.+|-.     |...+..+-  ..+..+-+-+|..
T Consensus       100 ~~~~Gi~~~st--------~~d~~svd~l~~~-~v~~~KI~S~~~~n~~LL~~va--~~gkPviLstGma  158 (349)
T 2wqp_A          100 VESKGMIFIST--------LFSRAAALRLQRM-DIPAYKIGSGECNNYPLIKLVA--SFGKPIILSTGMN  158 (349)
T ss_dssp             HHHTTCEEEEE--------ECSHHHHHHHHHH-TCSCEEECGGGTTCHHHHHHHH--TTCSCEEEECTTC
T ss_pred             HHHhCCeEEEe--------eCCHHHHHHHHhc-CCCEEEECcccccCHHHHHHHH--hcCCeEEEECCCC
Confidence            88888888741        2344455444432 34556665     444444443  2345565666654

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=90.90  E-value=2.5  Score=32.71  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..++......+.++..+..+.+.+.++|++++.+..       .+.....++.+. ..++|+++
T Consensus        20 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~~iPvV~   91 (291)
T 3l49_A           20 DLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN-------LDVLNPWLQKIN-DAGIPLFT   91 (291)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC-------HHHHHHHHHHHH-HTTCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhhhHHHHHHHH-HCCCcEEE
Confidence            345555555555   7777776666677888888999999999999987542       334445555554 45999999


Q ss_pred             EeCCC
Q psy9711          89 YNNTF   93 (198)
Q Consensus        89 Yn~P~   93 (198)
                      +|.+.
T Consensus        92 ~~~~~   96 (291)
T 3l49_A           92 VDTAT   96 (291)
T ss_dssp             ESCCC
T ss_pred             ecCCC
Confidence            98754

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=90.88  E-value=0.21  Score=40.67  Aligned_cols=111  Identities=9%  Similarity=0.032  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHccCCCC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      ..+.-.++++.+.+.+++||.+-+.. .+..+..+.++.+++.|+|++.+..-.... .+  ...-.++.+.+.+  ++|
T Consensus       110 ~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~--~~~~~~~i~~i~~--~ip  185 (318)
T 1vhn_A          110 DLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFT--GRAEWKALSVLEK--RIP  185 (318)
T ss_dssp             CHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTS--SCCCGGGGGGSCC--SSC
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCccccCC--CCcCHHHHHHHHc--CCe
Confidence            44555667777776667888875421 233445599999999999999997432111 01  1011244555555  788


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      |+.      .|--.+++...++.+.  -..|++=-.   |+..+.++.
T Consensus       186 Vi~------~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~  227 (318)
T 1vhn_A          186 TFV------SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIK  227 (318)
T ss_dssp             EEE------ESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHH
T ss_pred             EEE------ECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHH
Confidence            775      3434578888777752  233433332   555554443

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=90.87  E-value=2.4  Score=32.65  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=76.6

Q ss_pred             CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CCEEEEeCCCCcccccCHHHHHHHHc-
Q psy9711          34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IPVIIYNNTFVTNIDISVDTLVKLAH-  109 (198)
Q Consensus        34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~pi~lYn~P~~tg~~l~~~~l~~L~~-  109 (198)
                      .+++.-+.-++.|.+.|||.+-+..++-...+.+.+.+.+-.+++.++++   +|+++ .    ++ .++++.+.+.++ 
T Consensus        68 ~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIl-e----t~-~l~~e~i~~a~~i  141 (220)
T 1ub3_A           68 QEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVIL-E----TG-YFSPEEIARLAEA  141 (220)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEEC-C----GG-GSCHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEE-e----cC-CCCHHHHHHHHHH
Confidence            56777788899999999999999877643211248889999999998874   45554 2    32 257777665554 


Q ss_pred             --CCCEEEEeeC--------CHHHHHHHHhhcCCCCeE--EEecCh--hhHHHHhhcCCC--eEEec
Q psy9711         110 --HENIRGVKDT--------DNIKLANMANQTKDLNFS--VFAGSA--GYLLSGLLVGCA--GGINA  160 (198)
Q Consensus       110 --~p~i~giK~s--------d~~~~~~~~~~~~~~~~~--v~~G~d--~~~~~~l~~G~~--G~is~  160 (198)
                        --..-.||-|        +++.+..+. +..+.++.  +-.|.-  ...+..+.+|++  |.-++
T Consensus       142 a~eaGADfVKTsTGf~~~gat~~dv~~m~-~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g  207 (220)
T 1ub3_A          142 AIRGGADFLKTSTGFGPRGASLEDVALLV-RVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSG  207 (220)
T ss_dssp             HHHHTCSEEECCCSSSSCCCCHHHHHHHH-HHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             HHHhCCCEEEeCCCCCCCCCCHHHHHHHH-HhhCCCCeEEEECCCCCHHHHHHHHHCCCcccchhHH
Confidence              3467778887        223444443 22244444  444433  245666789998  76544

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=90.68  E-value=1.1  Score=37.92  Aligned_cols=117  Identities=8%  Similarity=-0.015  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+=  -|.-  +.  +   .+.++.|.+++++||
T Consensus       210 ~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~~--~~--d---~~~~~~l~~~~~iPI  280 (424)
T 3v3w_A          210 NYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME--DAVP--AE--N---QESFKLIRQHTTTPL  280 (424)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE--CCSC--CS--S---TTHHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE--CCCC--hH--h---HHHHHHHHhhCCCCE
Confidence            44567788888887  88998855 456789999999999999987553  4431  11  1   245788888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++......-++.+..+
T Consensus       281 a~dE------~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h  334 (424)
T 3v3w_A          281 AVGE------VFNSIHDCRELIQNQWIDYIRTTIVHAGGISQMRRIADFASLFHVRTGFH  334 (424)
T ss_dssp             EECT------TCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEEEC
T ss_pred             EEcc------CcCCHHHHHHHHHcCCCCeEeecchhcCCHHHHHHHHHHHHHcCCEEEec
Confidence            8733      2345677888874  4689999988   3444433332111234555443

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=90.67  E-value=1.7  Score=33.74  Aligned_cols=78  Identities=15%  Similarity=0.120  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..=..++++-+.+++   +..++......+.....+..+.+.+.++|++++.+...       +.+...++.+. ..++
T Consensus        19 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-------~~~~~~~~~~~-~~~i   90 (293)
T 3l6u_A           19 KHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD-------VYIGSAIEEAK-KAGI   90 (293)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT-------TTTHHHHHHHH-HTTC
T ss_pred             CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-------HHHHHHHHHHH-HcCC
Confidence            3334455566555555   77777777777888888899999999999999986532       11223344443 4589


Q ss_pred             CEEEEeCCC
Q psy9711          85 PVIIYNNTF   93 (198)
Q Consensus        85 pi~lYn~P~   93 (198)
                      |++++|.+.
T Consensus        91 PvV~~~~~~   99 (293)
T 3l6u_A           91 PVFAIDRMI   99 (293)
T ss_dssp             CEEEESSCC
T ss_pred             CEEEecCCC
Confidence            999998753

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=90.66  E-value=4.1  Score=30.36  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      .++++.+.+.. +.|++++....++.++  .++.+.++|||++.+.+-.    .  ++.+.+ +.+.+...++++.+--.
T Consensus        41 ~~~i~~l~~~~~~~~i~~~l~~~di~~~--~~~~a~~~Gad~v~vh~~~----~--~~~~~~-~~~~~~~~g~~~gv~~~  111 (207)
T 3ajx_A           41 LSVITAVKKAHPDKIVFADMKTMDAGEL--EADIAFKAGADLVTVLGSA----D--DSTIAG-AVKAAQAHNKGVVVDLI  111 (207)
T ss_dssp             THHHHHHHHHSTTSEEEEEEEECSCHHH--HHHHHHHTTCSEEEEETTS----C--HHHHHH-HHHHHHHHTCEEEEECT
T ss_pred             HHHHHHHHHhCCCCeEEEEEEecCccHH--HHHHHHhCCCCEEEEeccC----C--hHHHHH-HHHHHHHcCCceEEEEe
Confidence            34666666666 7899986654453233  4578889999999875321    1  333333 33334444565533110


Q ss_pred             CCCccccc-CHHH-HHHHHcC-CCEEEEeeC--------CH--HHHHHHHhhcCCCCeEEEecCh-hhHHHHhhcCCCeE
Q psy9711          92 TFVTNIDI-SVDT-LVKLAHH-ENIRGVKDT--------DN--IKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGG  157 (198)
Q Consensus        92 P~~tg~~l-~~~~-l~~L~~~-p~i~giK~s--------d~--~~~~~~~~~~~~~~~~v~~G~d-~~~~~~l~~G~~G~  157 (198)
                            .. +++. +..+.+. ...+++..+        ++  .++++... . +..+.+-.|-. +.....+..|++++
T Consensus       112 ------s~~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~-~-~~pi~v~GGI~~~~~~~~~~aGad~v  183 (207)
T 3ajx_A          112 ------GIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEK-A-RVPFSVAGGVKVATIPAVQKAGAEVA  183 (207)
T ss_dssp             ------TCSSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHH-H-TSCEEEESSCCGGGHHHHHHTTCSEE
T ss_pred             ------cCCChHHHHHHHHHhCCCEEEEEecccccccCCCchHHHHHHhhC-C-CCCEEEECCcCHHHHHHHHHcCCCEE
Confidence                  11 3333 4444432 344444322        22  33333331 1 23455555654 35667789999999


Q ss_pred             Eeccc
Q psy9711         158 INALS  162 (198)
Q Consensus       158 is~~~  162 (198)
                      +.|.+
T Consensus       184 vvGsa  188 (207)
T 3ajx_A          184 VAGGA  188 (207)
T ss_dssp             EESHH
T ss_pred             EEeee
Confidence            98865

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=90.64  E-value=2.4  Score=33.45  Aligned_cols=75  Identities=7%  Similarity=0.100  Sum_probs=38.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~   80 (198)
                      |++...++++|.++++.+++.. .+=++=+--...+..-++.+.+.+.|.. ++++.-.|. .|+  .+++.+.|+...+
T Consensus        92 G~~~~~~~~~~~~ll~~~~~~g-~~d~iDvEl~~~~~~~~l~~~~~~~~~k-vI~S~Hdf~~tP~--~~el~~~~~~~~~  167 (257)
T 2yr1_A           92 GQPIPLNEAEVRRLIEAICRSG-AIDLVDYELAYGERIADVRRMTEECSVW-LVVSRHYFDGTPR--KETLLADMRQAER  167 (257)
T ss_dssp             CCCCSSCHHHHHHHHHHHHHHT-CCSEEEEEGGGTTHHHHHHHHHHHTTCE-EEEEEEESSCCCC--HHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CCCEEEEECCCChhHHHHHHHHHhCCCE-EEEEecCCCCCcC--HHHHHHHHHHHHh
Confidence            4555889999999999998752 1111111100011223334444455543 333333332 344  6777777777653

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=90.63  E-value=1.8  Score=36.79  Aligned_cols=117  Identities=15%  Similarity=0.039  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++++-+ +.-+.++++++++..++.|++.+  --|.  .+.     =.+.++.|.+++++||
T Consensus       187 ~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~i--EeP~--~~~-----~~~~~~~l~~~~~iPI  257 (433)
T 3rcy_A          187 SLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWY--EEPV--PPD-----NVGAMAQVARAVRIPV  257 (433)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEE--ECCS--CTT-----CHHHHHHHHHHSSSCE
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEE--ECCC--Chh-----hHHHHHHHHhccCCCE
Confidence            44556778888776  78888855 45678999999999999987754  3443  111     1456788888999999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      +.=      ..-.++..+.++.+  .-.++-+|-+   .+....++......-++.+..+
T Consensus       258 a~d------E~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~gv~~~~h  311 (433)
T 3rcy_A          258 ATG------ERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVYNAQMAPH  311 (433)
T ss_dssp             EEC------TTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTTTCEECCC
T ss_pred             Eec------CCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEec
Confidence            873      33457888888884  4578888877   3444333332111234555544

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=90.54  E-value=0.58  Score=39.25  Aligned_cols=95  Identities=7%  Similarity=-0.050  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++.+-+ +..+.++++++++..++.|++  .+--|.  .+.     -.+.++.|.+++++||
T Consensus       193 ~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iE~P~--~~~-----d~~~~~~l~~~~~iPI  263 (403)
T 2ox4_A          193 KIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIF--FYEEIN--TPL-----NPRLLKEAKKKIDIPL  263 (403)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEE--EEECCS--CTT-----STHHHHHHHHTCCSCE
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCC--EEeCCC--Chh-----hHHHHHHHHHhCCCCE
Confidence            34456777777776  78888765 455789999999999998765  344554  111     1456788888889999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +.=.      .-.+++.+.++.+  .-+++-+|-+
T Consensus       264 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~  292 (403)
T 2ox4_A          264 ASGE------RIYSRWGFLPFLEDRSIDVIQPDLG  292 (403)
T ss_dssp             EECT------TCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred             EecC------CcCCHHHHHHHHHcCCCCEEecCcc
Confidence            8733      2345788888884  4689999987

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=90.50  E-value=3.9  Score=31.42  Aligned_cols=49  Identities=10%  Similarity=0.024  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEeC----CCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           9 EEEKLKIISTLRQETKKTIIAGT----YCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~~~pvi~gv----~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      .++-.+.++.++++++ |+++-+    +..+.++..+.++.++++|+|++-...
T Consensus       101 ~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tst  153 (225)
T 1mzh_A          101 YDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTST  153 (225)
T ss_dssp             HHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             hHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence            3444555777776664 444433    445667788999999999999995444

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=90.50  E-value=6.1  Score=32.84  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++=.+.++.++++.  ++++.+-+ ++-+.++++++++..++.|.+-..+--|.-  +.  +   .+.+++|.+++++|
T Consensus       169 ~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iEeP~~--~~--d---~~~~~~l~~~~~iP  241 (379)
T 3r0u_A          169 FNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVK--YY--D---IKAMAEITKFSNIP  241 (379)
T ss_dssp             HHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEECCSC--TT--C---HHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEECCCC--cc--c---HHHHHHHHhcCCCC
Confidence            455566777887777  67887755 556788899999988884444455556641  21  2   35567788888899


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |..=.      .-.+...+.++.+  .-.++-+|-+   .+....++......-++.+..|
T Consensus       242 Ia~dE------~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~  296 (379)
T 3r0u_A          242 VVADE------SVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVG  296 (379)
T ss_dssp             EEEST------TCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EEeCC------ccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            88722      2346777788774  4578888887   4544443332111234555544

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=90.31  E-value=5.2  Score=30.98  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCe---EEEeC------CCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH-
Q psy9711           6 KSTEEEKLKIISTLRQETKKT---IIAGT------YCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE-   68 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~p---vi~gv------~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~-   68 (198)
                      .++.++..++-+.+.+. ++.   +.++.      ++.+       .+...+.++.|+++|+..+.+.+......+ .+ 
T Consensus        43 ~~~~~~~~~~~~~l~~~-gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~-~~~  120 (287)
T 2x7v_A           43 LPSDEAATKFKREMKKH-GIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTG-EEE  120 (287)
T ss_dssp             CCCHHHHHHHHHHHHHH-TCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSC-HHH
T ss_pred             CCCHHHHHHHHHHHHHc-CCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCC-HHH
Confidence            45677777777776665 444   33332      2111       234456678889999999887655432222 12 


Q ss_pred             --HHHHHHHHHHHcc-CCCCEEEEeCCCCcccc--cCHHHHHHHHc-C---CCEEEEeeC
Q psy9711          69 --DLIYEHFISVADN-SPIPVIIYNNTFVTNID--ISVDTLVKLAH-H---ENIRGVKDT  119 (198)
Q Consensus        69 --~~i~~y~~~i~~~-~~~pi~lYn~P~~tg~~--l~~~~l~~L~~-~---p~i~giK~s  119 (198)
                        +.+.+.++.+++. .++.+.+-|.+.. +..  -+++.+.+|.+ +   |++--+=|.
T Consensus       121 ~~~~~~~~l~~l~~~~~gv~l~lEn~~~~-~~~~~~~~~~~~~l~~~~~~~~~vg~~~D~  179 (287)
T 2x7v_A          121 GIDRIVRGLNEVLNNTEGVVILLENVSQK-GGNIGYKLEQLKKIRDLVDQRDRVAITYDT  179 (287)
T ss_dssp             HHHHHHHHHHHHHTTCCSCEEEEECCCCC-TTEECSSHHHHHHHHHHCSCGGGEEEEEEH
T ss_pred             HHHHHHHHHHHHHcccCCCEEEEeCCCCC-CCccCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence              3456777888766 4788999998643 222  37888888873 4   565444443

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=90.26  E-value=1.3  Score=37.19  Aligned_cols=96  Identities=14%  Similarity=0.003  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+++++
T Consensus       173 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~i  243 (393)
T 4dwd_A          173 DIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWF--EEPV--QHY--H---VGAMGEVAQRLDI  243 (393)
T ss_dssp             CHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEE--ECCS--CTT--C---HHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Ccc--c---HHHHHHHHhhCCC
Confidence            4667778888888886  78888754 45678999999999999987654  3453  121  1   3667888888999


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHH--cCCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLA--HHENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~--~~p~i~giK~s  119 (198)
                      ||+.=.      .-.+++.+.++.  . ..++-+|-+
T Consensus       244 PIa~dE------~~~~~~~~~~~i~~~-~d~v~~k~~  273 (393)
T 4dwd_A          244 TVSAGE------QTYTLQALKDLILSG-VRMVQPDIV  273 (393)
T ss_dssp             EEEBCT------TCCSHHHHHHHHHHT-CCEECCCTT
T ss_pred             CEEecC------CcCCHHHHHHHHHcC-CCEEEeCcc
Confidence            998632      234677888875  5 788889988

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=90.20  E-value=0.63  Score=37.16  Aligned_cols=62  Identities=18%  Similarity=0.104  Sum_probs=47.9

Q ss_pred             eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC----------------CCCHHHHHHHHHHHHccCCCCEEE--EeC
Q psy9711          30 GTYCESTRATIDLTQKAAKAGANAALILCPYYFQK----------------KMTEDLIYEHFISVADNSPIPVII--YNN   91 (198)
Q Consensus        30 gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~----------------~~~~~~i~~y~~~i~~~~~~pi~l--Yn~   91 (198)
                      -.|.++.+.+++.++...+. +|.+.+.-||-.+.                ..+-+.+.+..+++-+.+++|+++  |.+
T Consensus        23 ~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n  101 (271)
T 1ujp_A           23 TAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLN  101 (271)
T ss_dssp             ETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHH
T ss_pred             cCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCc
Confidence            46889999999999999999 99999999985321                112455667778887777899999  655


Q ss_pred             C
Q psy9711          92 T   92 (198)
Q Consensus        92 P   92 (198)
                      |
T Consensus       102 ~  102 (271)
T 1ujp_A          102 P  102 (271)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=90.17  E-value=2.1  Score=34.02  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCC---cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCE---STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~---~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      -.+|.+|-..-.+.+++.+ +.+|++-....   |.+++++.++...++||++|-+--         ++++.+-.+.+.+
T Consensus        58 ~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~kaGa~aVklEg---------g~e~~~~I~al~~  128 (264)
T 1m3u_A           58 LPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEG---------GEWLVETVQMLTE  128 (264)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECCC---------SGGGHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEECC---------cHHHHHHHHHHHH
Confidence            4578899999999998888 66777765443   789999999999999999998852         4456777777765


Q ss_pred             cCCCCEEEE
Q psy9711          81 NSPIPVIIY   89 (198)
Q Consensus        81 ~~~~pi~lY   89 (198)
                       .++|++=+
T Consensus       129 -agipV~gH  136 (264)
T 1m3u_A          129 -RAVPVCGH  136 (264)
T ss_dssp             -TTCCEEEE
T ss_pred             -CCCCeEee
Confidence             58999843

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=90.07  E-value=1.6  Score=36.21  Aligned_cols=72  Identities=13%  Similarity=0.075  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711          13 LKIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +++++.+.+. ++|+-+||.+-|+                 +.+++.++.+++.|.+-++++...    + +....++-|
T Consensus       123 ~~vv~~ak~~-~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~----S-~v~~~i~ay  196 (366)
T 3noy_A          123 REIVEEAKRR-GVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKG----S-DVLQNVRAN  196 (366)
T ss_dssp             HHHHHHHHHH-TCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC----S-SHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeec----C-ChHHHHHHH
Confidence            3455555444 9999999765542                 556888999999999988876443    2 377788999


Q ss_pred             HHHHccCCCCEEEEe
Q psy9711          76 ISVADNSPIPVIIYN   90 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn   90 (198)
                      +.+++.++.|+-+=-
T Consensus       197 r~la~~~dyPLHlGv  211 (366)
T 3noy_A          197 LIFAERTDVPLHIGI  211 (366)
T ss_dssp             HHHHHHCCCCEEECC
T ss_pred             HHHHhccCCCEEEcc
Confidence            999999999986643

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=89.99  E-value=2.1  Score=36.68  Aligned_cols=39  Identities=8%  Similarity=0.021  Sum_probs=31.1

Q ss_pred             CCe-EEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy9711          24 KKT-IIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYF   62 (198)
Q Consensus        24 ~~p-vi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~   62 (198)
                      ++| |++=++. .+.++..+.++.++++|+|++.+..-...
T Consensus       296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~  336 (443)
T 1tv5_A          296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ  336 (443)
T ss_dssp             SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            468 8887664 34468899999999999999999977653

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=89.96  E-value=4.5  Score=33.26  Aligned_cols=149  Identities=9%  Similarity=0.011  Sum_probs=88.2

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcC--------CCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQ--------KKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~--------~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.|+++++.+.+.++..+.++.+++.|+|+|-+-  .|....        .-.+++-+.+-.+.+.+++++||.+=-.++
T Consensus        57 ~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g  136 (350)
T 3b0p_A           57 EHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG  136 (350)
T ss_dssp             GCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC
T ss_pred             CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC
Confidence            7899999988888999999999999999999887  354211        001366777777888888899998833222


Q ss_pred             CcccccC----HHHHHHHHcCCCEEEEeeC-------------------CHHHHHHHHhhcCCCCeEEEe-cC--h-hhH
Q psy9711          94 VTNIDIS----VDTLVKLAHHENIRGVKDT-------------------DNIKLANMANQTKDLNFSVFA-GS--A-GYL  146 (198)
Q Consensus        94 ~tg~~l~----~~~l~~L~~~p~i~giK~s-------------------d~~~~~~~~~~~~~~~~~v~~-G~--d-~~~  146 (198)
                      .... .+    .+...++.+. .+.+|..+                   ++..+.++. +.. +++.|+. |.  + ...
T Consensus       137 ~~~~-~~~~~~~~~a~~l~~a-G~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik-~~~-~~iPVianGgI~s~eda  212 (350)
T 3b0p_A          137 LEGK-ETYRGLAQSVEAMAEA-GVKVFVVHARSALLALSTKANREIPPLRHDWVHRLK-GDF-PQLTFVTNGGIRSLEEA  212 (350)
T ss_dssp             BTTC-CCHHHHHHHHHHHHHT-TCCEEEEECSCBC----------CCCCCHHHHHHHH-HHC-TTSEEEEESSCCSHHHH
T ss_pred             cCcc-ccHHHHHHHHHHHHHc-CCCEEEEecCchhcccCcccccCCCcccHHHHHHHH-HhC-CCCeEEEECCcCCHHHH
Confidence            2111 12    2333344332 22222221                   344444444 333 3455543 32  1 234


Q ss_pred             HHHhhcCCCeEEeccccc-chHHHHHHHHHHH
Q psy9711         147 LSGLLVGCAGGINALSAV-LGGPICELYDLAK  177 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~  177 (198)
                      ...+. |+||++.|.+.+ -|.++.++.+.+.
T Consensus       213 ~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~  243 (350)
T 3b0p_A          213 LFHLK-RVDGVMLGRAVYEDPFVLEEADRRVF  243 (350)
T ss_dssp             HHHHT-TSSEEEECHHHHHCGGGGTTHHHHTT
T ss_pred             HHHHh-CCCEEEECHHHHhCcHHHHHHHHHhc
Confidence            45565 999999888754 3666555554443

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=89.86  E-value=1.4  Score=36.32  Aligned_cols=99  Identities=9%  Similarity=0.084  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .+.++.+++..  ++++.+-+ ++.+.++ +++++..++.|++.  +--|.  .+.  +   .+.++.+.+++++||+.=
T Consensus       170 ~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~--iE~P~--~~~--~---~~~~~~l~~~~~ipIa~d  239 (368)
T 1sjd_A          170 VEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLLL--IEQPL--EEE--D---VLGHAELARRIQTPICLD  239 (368)
T ss_dssp             HHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCSE--EECCS--CTT--C---HHHHHHHHTTCSSCEEES
T ss_pred             HHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCCe--EeCCC--Chh--h---HHHHHHHHHhCCCCEEEC
Confidence            45666666666  67777654 4456788 99999998988874  34553  121  1   466788888889999873


Q ss_pred             eCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          90 NNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        90 n~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      .      .-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       240 E------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  276 (368)
T 1sjd_A          240 E------SIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRV  276 (368)
T ss_dssp             T------TCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHH
T ss_pred             C------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHH
Confidence            3      2356788888874  4689999988   45444443

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=89.82  E-value=0.63  Score=38.83  Aligned_cols=97  Identities=12%  Similarity=0.072  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhc-CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKA-GANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~-Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++-.+.++.++++.  ++++.+-+ ++.+.+++++.++..++. |++  ++--|.  .+.  +   .+.++.+.++++
T Consensus       166 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~--~iEqP~--~~~--d---~~~~~~l~~~~~  236 (382)
T 2gdq_A          166 SFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIG--WLEEPL--PFD--Q---PQDYAMLRSRLS  236 (382)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEE--EEECCS--CSS--C---HHHHHHHHTTCS
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCe--EEECCC--Ccc--c---HHHHHHHHhhCC
Confidence            3455567778887776  78887755 455788999999998887 655  344553  121  2   456778888889


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +||+.=.      .-.+++.+.++.+  .-+++-+|-+
T Consensus       237 iPIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~  268 (382)
T 2gdq_A          237 VPVAGGE------NMKGPAQYVPLLSQRCLDIIQPDVM  268 (382)
T ss_dssp             SCEEECT------TCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred             CCEEecC------CcCCHHHHHHHHHcCCCCEEecCcc
Confidence            9988733      2346788888874  4688889987

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=89.78  E-value=6.2  Score=32.73  Aligned_cols=115  Identities=10%  Similarity=0.128  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.+++++  ++++++=+ ++-+.++++++++..++.|+   ++--|.-   +  .    +.++.+.+++++|
T Consensus       172 ~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iEqP~~---~--~----~~~~~l~~~~~iP  239 (378)
T 3eez_A          172 VERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQPGE---T--L----DDIAAIRPLHSAP  239 (378)
T ss_dssp             HHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC---CEECCSS---S--H----HHHHHTGGGCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe---EEecCCC---C--H----HHHHHHHhhCCCC
Confidence            556667788887776  78887754 45578899999999988875   3444542   2  2    4568888889999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |+.=      +.-.+++.+.++.+  .-.++-+|-+   .+....++......-++.+..|
T Consensus       240 Ia~d------E~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~  294 (378)
T 3eez_A          240 VSVD------ECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVM  294 (378)
T ss_dssp             EEEC------TTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEC------CCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcC
Confidence            8872      23456788888884  4688999987   5554444432111234555543

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=89.75  E-value=2.2  Score=35.82  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.+++++  ++++++=+ ++-+.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+++++|
T Consensus       191 ~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EeP~--~~~--~---~~~~~~l~~~~~iP  261 (404)
T 4e5t_A          191 LERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWF--EEPI--PPE--K---PEDMAEVARYTSIP  261 (404)
T ss_dssp             HHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEE--ECCS--CTT--C---HHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEE--ECCC--Ccc--c---HHHHHHHHhhCCCC
Confidence            345567788888877  78888754 45678999999999999998754  3443  121  1   35678888899999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       262 Ia~dE------~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~i  302 (404)
T 4e5t_A          262 VATGE------RLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKI  302 (404)
T ss_dssp             EEECT------TCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHH
T ss_pred             EEeCC------CcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence            98733      2346778888874  4588999988   45544443

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=89.73  E-value=3.4  Score=34.99  Aligned_cols=55  Identities=11%  Similarity=0.131  Sum_probs=41.1

Q ss_pred             CHHHHHHHHHHHHHhc--------------------CCe-EEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy9711           8 TEEEKLKIISTLRQET--------------------KKT-IIAGTYCE-STRATIDLTQKAAKAGANAALILCPYYF   62 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--------------------~~p-vi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~   62 (198)
                      +.+.-.++++.+.++.                    ++| |++=++.. +.++..+.++.++++|+|++.+..-...
T Consensus       232 ~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~  308 (415)
T 3i65_A          232 EAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ  308 (415)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSC
T ss_pred             CHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcc
Confidence            3455567888877751                    578 88876654 3457899999999999999999876553

>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A

Probab=89.66  E-value=2  Score=37.26  Aligned_cols=81  Identities=6%  Similarity=-0.086  Sum_probs=53.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      ...+..+||......+++.+      ++--.+.+++.+.++.+++++.++++|+.++|+-+-.  ..+ .-..+.++.+ 
T Consensus       218 qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~~eM~~Ra~~a~e~G~~~~mvd~~~--G~~-a~~~l~~~~r-  293 (493)
T 1bwv_A          218 QPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVI--GYT-AIQTMAKWAR-  293 (493)
T ss_dssp             BTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEGGG--CHH-HHHHHHHHHH-
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhhCCcceeeccCCCCCHHHHHHHHHHHHHhCCCeEEEeccc--ChH-HHHHHHHHHh-
Confidence            45567789987555444443      3445679998889999999999999999999886322  222 0233333333 


Q ss_pred             HHccCCCCEEEEeC
Q psy9711          78 VADNSPIPVIIYNN   91 (198)
Q Consensus        78 i~~~~~~pi~lYn~   91 (198)
                         ..++|+..+-.
T Consensus       294 ---~~~l~lh~HRA  304 (493)
T 1bwv_A          294 ---DNDMILHLHRA  304 (493)
T ss_dssp             ---HTTCEEEEECT
T ss_pred             ---hcCcEEEecCC
Confidence               35788777643

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=89.66  E-value=1.1  Score=37.20  Aligned_cols=97  Identities=6%  Similarity=-0.005  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCc-HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCES-TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~-~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      +.++-.+.++.++++.  ++++++=+ ++-+ .++++++++..++.|++.+  --|..  +.  +   .+.++.|.++++
T Consensus       175 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~i--EqP~~--~~--~---~~~~~~l~~~~~  245 (374)
T 3sjn_A          175 DPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWI--EEPVL--AD--S---LISYEKLSRQVS  245 (374)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEE--ECSSC--TT--C---HHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEE--ECCCC--cc--c---HHHHHHHHhhCC
Confidence            4577778888888886  88988865 4456 8999999999999988754  34531  21  1   356788888899


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +||+.=.      .-.+++.+.++.+  .-.++-+|-+
T Consensus       246 iPIa~dE------~~~~~~~~~~~l~~~~~d~v~~k~~  277 (374)
T 3sjn_A          246 QKIAGGE------SLTTRYEFQEFITKSNADIVQPDIT  277 (374)
T ss_dssp             SEEEECT------TCCHHHHHHHHHHHHCCSEECCBTT
T ss_pred             CCEEeCC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence            9998733      2345778888873  5789999988

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=89.65  E-value=2.7  Score=32.83  Aligned_cols=74  Identities=9%  Similarity=0.139  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          12 KLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ..++++-+.+++   +..++. ..+..+.++..+..+.+.+.++|++++.+....       .....++.+. ..++|++
T Consensus        19 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~-~~~iPvV   90 (305)
T 3g1w_A           19 WKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-------ELTDTINKAV-DAGIPIV   90 (305)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT-------TTHHHHHHHH-HTTCCEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH-------HHHHHHHHHH-HCCCcEE
Confidence            344555555554   777776 667778888889999999999999999765321       1223344443 3689999


Q ss_pred             EEeCCC
Q psy9711          88 IYNNTF   93 (198)
Q Consensus        88 lYn~P~   93 (198)
                      ++|.+.
T Consensus        91 ~~~~~~   96 (305)
T 3g1w_A           91 LFDSGA   96 (305)
T ss_dssp             EESSCC
T ss_pred             EECCCC
Confidence            998743

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=89.57  E-value=3.2  Score=33.92  Aligned_cols=42  Identities=19%  Similarity=0.338  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711          10 EEKLKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      ..-.++++.+++.. ..||+.| +.  +    .+.++.+.++|||++.+.
T Consensus       134 ~~~~~~i~~lr~~~~~~~vi~G~v~--s----~e~A~~a~~aGad~Ivvs  177 (336)
T 1ypf_A          134 NAVINMIQHIKKHLPESFVIAGNVG--T----PEAVRELENAGADATKVG  177 (336)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEEEEC--S----HHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCcC--C----HHHHHHHHHcCCCEEEEe
Confidence            44567788888877 6788877 43  2    367888999999999995

>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}

Probab=89.51  E-value=6.3  Score=32.28  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=72.5

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcCC-
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHHE-  111 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~p-  111 (198)
                      ++.++...++|+|++.+.-|.-...  +++..    ..|++.|.+..   +.|++++-.    |.   ...+..|.+.+ 
T Consensus       196 ~~~~~~~~~aGad~i~i~D~~~~~l--sp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~----G~---~~~l~~l~~~g~  266 (359)
T 2inf_A          196 IVYVKAQIKAGAKAIQIFDSWVGAL--NQADYRTYIKPVMNRIFSELAKENVPLIMFGV----GA---SHLAGDWHDLPL  266 (359)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTGGGS--CHHHHHHHTHHHHHHHHHHHGGGCSCEEEECT----TC---GGGHHHHHTSSC
T ss_pred             HHHHHHHHHhCCCEEEEeCCccccC--CHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcC----Cc---HHHHHHHHHhCC
Confidence            4555666789999999988843333  36554    45567777666   688887642    32   22566677653 


Q ss_pred             CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhhcCC--CeEEecccc-----cchHHHHH
Q psy9711         112 NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLLVGC--AGGINALSA-----VLGGPICE  171 (198)
Q Consensus       112 ~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~~G~--~G~is~~~n-----~~P~~~~~  171 (198)
                      +++++-.. |+....    +. +++..+..+.|..+            -..+..|.  .|.|-+.++     .-|+-+..
T Consensus       267 d~~~~d~~~d~~~~~----~~-g~~~~l~Gnldp~~l~~t~e~I~~~v~~~l~~~~~~~g~Il~~gcgi~~~~~~enl~a  341 (359)
T 2inf_A          267 DVVGLDWRLGIDEAR----SK-GITKTVQGNLDPSILLAPWEVIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVLKK  341 (359)
T ss_dssp             SEEECCTTSCHHHHH----HT-TCCSEEECCBCGGGGGSCHHHHHHHHHHHHHHHTTSSCEEBCBSSCCCTTSCHHHHHH
T ss_pred             CEEEeCCCCCHHHHH----Hc-CCCEEEEecCChHHhcCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCCCCCcCHHHHHH
Confidence            68887444 765543    23 45555555444311            11122233  478877665     33566677


Q ss_pred             HHHHHH
Q psy9711         172 LYDLAK  177 (198)
Q Consensus       172 l~~~~~  177 (198)
                      +.++++
T Consensus       342 ~ve~v~  347 (359)
T 2inf_A          342 LTAFVH  347 (359)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776665

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=89.50  E-value=1  Score=38.14  Aligned_cols=95  Identities=11%  Similarity=-0.009  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.++++.  ++++++-+ ++-+.++++++++..++.|++.+=  -|.  .+.  +   .+.++.|.+++++||
T Consensus       204 ~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~--~~~--d---~~~~~~l~~~~~iPI  274 (418)
T 3r4e_A          204 NYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE--DCT--PAE--N---QEAFRLVRQHTVTPL  274 (418)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE--SCS--CCS--S---GGGGHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE--CCC--Ccc--C---HHHHHHHHhcCCCCE
Confidence            34466788888887  88998865 456789999999999999987553  443  111  1   245778888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +.=.      .-.+++.+.++.+  .-.++-+|-+
T Consensus       275 a~dE------~~~~~~~~~~~l~~~a~d~v~~k~~  303 (418)
T 3r4e_A          275 AVGE------IFNTIWDAKDLIQNQLIDYIRATVV  303 (418)
T ss_dssp             EECT------TCCSGGGTHHHHHTTCCSEECCCTT
T ss_pred             EEcC------CcCCHHHHHHHHHcCCCCeEecCcc
Confidence            8733      2345677888874  4689999988

>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1

Probab=89.43  E-value=4.2  Score=33.25  Aligned_cols=126  Identities=14%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      ++.++...++|+|++++.-|.-...+  ++...    .|++.+.+..     ++|++ |.. ..++     ..+..|.+.
T Consensus       196 ~~~~~~~~~aGad~iqi~D~~~~~ls--p~~f~ef~~p~~~~i~~~i~~~~~~~~~i-h~c-~g~~-----~~l~~l~~~  266 (353)
T 1j93_A          196 AKYIRYQADSGAQAVQIFDSWATELS--PVDFEEFSLPYLKQIVDSVKLTHPNLPLI-LYA-SGSG-----GLLERLPLT  266 (353)
T ss_dssp             HHHHHHHHHTTCSEEEEECGGGGGSC--HHHHHHHTHHHHHHHHHHHHHHSTTCCEE-EEC-SSCT-----TTGGGGGGG
T ss_pred             HHHHHHHHHhCCCEEEEeCcccccCC--HHHHHHHhHHHHHHHHHHHHHhCCCCCEE-EEC-CChH-----HHHHHHHhc
Confidence            44555666899999999888532233  65544    4556666655     68875 443 2222     234455553


Q ss_pred             -CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhh-cCCCeEEecccc-----cchHHHH
Q psy9711         111 -ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLL-VGCAGGINALSA-----VLGGPIC  170 (198)
Q Consensus       111 -p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~-~G~~G~is~~~n-----~~P~~~~  170 (198)
                       .+++++-.. |+....+.+    +++..+..+.|..+            ...+. .|..|+|-+.++     .-|+-+.
T Consensus       267 g~d~~~~d~~~d~~~~~~~~----g~~~~l~Gnldp~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~~~~~~enl~  342 (353)
T 1j93_A          267 GVDVVSLDWTVDMADGRRRL----GPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFA  342 (353)
T ss_dssp             CCSEEECCTTSCHHHHHHHT----CSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCCHHHHH
T ss_pred             CCCEEEeCCCCCHHHHHHHc----CCCeEEEecCCHHHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCHHHHH
Confidence             367777444 777665433    34555554434311            11122 255688876664     3456666


Q ss_pred             HHHHHHHc
Q psy9711         171 ELYDLAKA  178 (198)
Q Consensus       171 ~l~~~~~~  178 (198)
                      .+.+++++
T Consensus       343 a~ve~v~~  350 (353)
T 1j93_A          343 HFFEIAKG  350 (353)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            67666653

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=89.41  E-value=4.6  Score=33.94  Aligned_cols=103  Identities=10%  Similarity=0.011  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      +-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+=  -|. ..+.  +   .+.++.|.+++++||+
T Consensus       198 ~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~-~~~~--~---~~~~~~l~~~~~iPIa  269 (410)
T 3dip_A          198 DGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVE--DPI-AKMD--N---IPAVADLRRQTRAPIC  269 (410)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEE--CCB-SCTT--C---HHHHHHHHHHHCCCEE
T ss_pred             HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEE--CCC-CCcc--c---HHHHHHHHhhCCCCEE
Confidence            4456778888877  78888855 566789999999999999876543  441 1111  1   3567888888999998


Q ss_pred             EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      .=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       270 ~dE------~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i  308 (410)
T 3dip_A          270 GGE------NLAGTRRFHEMLCADAIDFVMLDLTWCGGLSEGRKI  308 (410)
T ss_dssp             ECT------TCCSHHHHHHHHHTTCCSEEEECTTTSSCHHHHHHH
T ss_pred             ecC------CcCCHHHHHHHHHcCCCCeEeecccccCCHHHHHHH
Confidence            832      3456888888874  4689999998   45544443

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=89.39  E-value=5.7  Score=31.24  Aligned_cols=93  Identities=8%  Similarity=0.084  Sum_probs=65.8

Q ss_pred             eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc---ccCH
Q psy9711          26 TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI---DISV  101 (198)
Q Consensus        26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~---~l~~  101 (198)
                      .|.+-+...+.++.++.++.+.+.|+|.+=+---++...+ +.+.+.+..+.+-+.+ ++|+++-.-+...|-   ..+.
T Consensus        21 ~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~-~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~   99 (257)
T 2yr1_A           21 CICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAID-DQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNE   99 (257)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTT-CHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCH
T ss_pred             EEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccC-cHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCH
Confidence            3566778889999999999999999999999887775543 3567777777777777 799988776555444   4566


Q ss_pred             HHHHHHH----cC--CCEEEEeeC
Q psy9711         102 DTLVKLA----HH--ENIRGVKDT  119 (198)
Q Consensus       102 ~~l~~L~----~~--p~i~giK~s  119 (198)
                      +...+|.    +.  +..+=+=..
T Consensus       100 ~~~~~ll~~~~~~g~~d~iDvEl~  123 (257)
T 2yr1_A          100 AEVRRLIEAICRSGAIDLVDYELA  123 (257)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEEGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECC
Confidence            6544443    32  445555444

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=89.20  E-value=0.98  Score=38.35  Aligned_cols=115  Identities=9%  Similarity=-0.058  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      -.+.++.++++.  ++++++-+ ++-+.++++++++..++.|++.+=  -|.-  +.  +   .+.++.|.+++++||+.
T Consensus       213 d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~~--~~--d---~~~~~~l~~~~~iPIa~  283 (425)
T 3vcn_A          213 VPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE--DSVP--AE--N---QAGFRLIRQHTTTPLAV  283 (425)
T ss_dssp             THHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE--CCSC--CS--S---TTHHHHHHHHCCSCEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE--CCCC--hh--h---HHHHHHHHhcCCCCEEe
Confidence            356778888877  88998865 456789999999999999987553  4431  11  1   23478888889999987


Q ss_pred             EeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          89 YNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      =.      .-.+++.+.++.+  .-.++-+|-+   .+....++......-++.+..+
T Consensus       284 dE------~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h  335 (425)
T 3vcn_A          284 GE------IFAHVWDAKQLIEEQLIDYLRATVLHAGGITNLKKIAAFADLHHVKTGCH  335 (425)
T ss_dssp             CT------TCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHGGGTCEECCC
T ss_pred             CC------CcCCHHHHHHHHHcCCCCeEecChhhcCCHHHHHHHHHHHHHcCCEEeec
Confidence            33      2345677888874  4689999988   3444444332111234555443

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=89.18  E-value=2.7  Score=34.51  Aligned_cols=75  Identities=8%  Similarity=-0.103  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhcCCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCC
Q psy9711          11 EKLKIISTLRQETKKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIP   85 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~p   85 (198)
                      +-.+.++.+.+. +..+...+   ...+.+..++.++.+.+.|++.+.+.--. ...  +++++.+.++.+.+.+  ++|
T Consensus       121 ~~~~~i~~ak~~-G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~p  196 (345)
T 1nvm_A          121 VSKQHIEYARNL-GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSG-GAM--SMNDIRDRMRAFKAVLKPETQ  196 (345)
T ss_dssp             GGHHHHHHHHHH-TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTT-CCC--CHHHHHHHHHHHHHHSCTTSE
T ss_pred             HHHHHHHHHHHC-CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCc-Ccc--CHHHHHHHHHHHHHhcCCCce
Confidence            344555555544 55555554   34456788999999999999977765432 223  3899999999999888  688


Q ss_pred             EEEE
Q psy9711          86 VIIY   89 (198)
Q Consensus        86 i~lY   89 (198)
                      |-+|
T Consensus       197 i~~H  200 (345)
T 1nvm_A          197 VGMH  200 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8885

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=89.12  E-value=0.93  Score=35.91  Aligned_cols=74  Identities=15%  Similarity=0.114  Sum_probs=51.0

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      |..+.++++++++.|.+.|.+.+.++|-+... ...+.+.+.++++++-+.   .+.|+-|+-   ..=+.+.++....|
T Consensus        15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~i~I~~---G~Ev~~~~~~~~~l   91 (262)
T 3qy7_A           15 GAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRLIKEDIPLHVLP---GQEIRIYGEVEQDL   91 (262)
T ss_dssp             SCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHHHHTTCCCEEEC---CCEEECCTTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEec---CeEEecchhHHHHH
Confidence            55689999999999999999999998765321 111388999999888765   346666543   12234556666655


Q ss_pred             H
Q psy9711         108 A  108 (198)
Q Consensus       108 ~  108 (198)
                      .
T Consensus        92 ~   92 (262)
T 3qy7_A           92 A   92 (262)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=89.01  E-value=4.6  Score=33.39  Aligned_cols=100  Identities=8%  Similarity=0.054  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.+++++  ++++.+-+ ++-+.++++++++..+ .|+   ++--|+.   +      .+.++.+.+++++|
T Consensus       173 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~i---~iEqP~~---d------~~~~~~l~~~~~iP  239 (378)
T 2qdd_A          173 PAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-ARD---WIEQPCQ---T------LDQCAHVARRVANP  239 (378)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CCC---EEECCSS---S------HHHHHHHHTTCCSC
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CCc---EEEcCCC---C------HHHHHHHHHhCCCC
Confidence            344456666666665  56666644 3345677777777665 554   4444432   1      34566666777777


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=.      .-.+++.+.++.+  .-+++-+|-+   .+....++
T Consensus       240 I~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i  280 (378)
T 2qdd_A          240 IMLDE------CLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQI  280 (378)
T ss_dssp             EEECT------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred             EEECC------CcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence            77622      2335667777763  4577788777   45443333

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=88.99  E-value=2.9  Score=32.21  Aligned_cols=103  Identities=13%  Similarity=-0.031  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEe-C-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAG-T-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~g-v-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      .++.++..++.+...+. ++.+... . ...+.+...+.++.|+++|+..+.+.|.        . +..+...++++..+
T Consensus        57 ~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--------~-~~l~~l~~~a~~~g  126 (257)
T 3lmz_A           57 NSTDEQIRAFHDKCAAH-KVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--------Y-ELLPYVDKKVKEYD  126 (257)
T ss_dssp             TCCHHHHHHHHHHHHHT-TCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--------G-GGHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHc-CCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--------H-HHHHHHHHHHHHcC
Confidence            35677777777666555 5555432 2 1246777888889999999999987532        2 22344555666678


Q ss_pred             CCEEEEeC-CCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          84 IPVIIYNN-TFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        84 ~pi~lYn~-P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +.+.+.|. |..+ ..-+++.+.++.+  .||+--.=|.
T Consensus       127 v~l~lEn~~~~~~-~~~~~~~~~~ll~~~~p~vg~~~D~  164 (257)
T 3lmz_A          127 FHYAIHLHGPDIK-TYPDATDVWVHTKDLDPRIGMCLDV  164 (257)
T ss_dssp             CEEEEECCCTTCS-SSCSHHHHHHHHTTSCTTEEEEEEH
T ss_pred             CEEEEecCCCccc-ccCCHHHHHHHHHhCCCCccEEEch
Confidence            99999998 4322 2237778888874  4776555444

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=88.98  E-value=4.9  Score=35.42  Aligned_cols=113  Identities=12%  Similarity=-0.010  Sum_probs=80.0

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      +.+|-+.+++.+.+.. ++|+++..+-         .+.++++...   .+.|++++.+-.-    ..  ++.+..+.+.
T Consensus       150 ~~~Ea~aa~~a~~~~~~~~Pv~vS~t~~~~g~~~~G~~~~~~~~~l---~~~~~~avG~NC~----~g--p~~~~~~l~~  220 (566)
T 1q7z_A          150 DILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITF---DELDIDALGINCS----LG--PEEILPIFQE  220 (566)
T ss_dssp             CHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTSCCHHHHHHHH---HTSSCSEEEEESS----SC--HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCeeCCCCcHHHHHHHh---hccCCCEEEEeCC----CC--HHHHHHHHHH
Confidence            5677788888887764 8999987642         2345555544   4578998887642    22  8999999999


Q ss_pred             HHccCCCCEEEEeCCCC-------cccccCHHHHHHHH----c-CCCEEEEeeC-CHHHHHHHHh
Q psy9711          78 VADNSPIPVIIYNNTFV-------TNIDISVDTLVKLA----H-HENIRGVKDT-DNIKLANMAN  129 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~-------tg~~l~~~~l~~L~----~-~p~i~giK~s-d~~~~~~~~~  129 (198)
                      +...++.|+++|-|-+.       +.++.+|+.+.+.+    + --+|+|=-.. ++.+++++.+
T Consensus       221 l~~~~~~p~~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~aia~  285 (566)
T 1q7z_A          221 LSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRK  285 (566)
T ss_dssp             HHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCCCCCcccCCccccCCCHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHH
Confidence            99888999999976322       23456787666544    2 2588888877 8888877653

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=88.97  E-value=1.8  Score=33.41  Aligned_cols=83  Identities=13%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNT   92 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P   92 (198)
                      ++++.+.+ .+.+++.|+.  +..|    ++.|.+.|+|.+.+-|     ..  .-+=.+|.+++.... ++|++-    
T Consensus       101 ~v~~~ar~-~g~~~i~Gv~--t~~e----~~~A~~~Gad~vk~Fp-----a~--~~gG~~~lk~l~~~~~~ipvva----  162 (224)
T 1vhc_A          101 KIVKLCQD-LNFPITPGVN--NPMA----IEIALEMGISAVKFFP-----AE--ASGGVKMIKALLGPYAQLQIMP----  162 (224)
T ss_dssp             HHHHHHHH-TTCCEECEEC--SHHH----HHHHHHTTCCEEEETT-----TT--TTTHHHHHHHHHTTTTTCEEEE----
T ss_pred             HHHHHHHH-hCCCEEeccC--CHHH----HHHHHHCCCCEEEEee-----Cc--cccCHHHHHHHHhhCCCCeEEE----
Confidence            34444444 3788888854  3444    4567789999999933     11  111258888998877 688864    


Q ss_pred             CCcccccCHHHHHHHHcCCCEEEEe
Q psy9711          93 FVTNIDISVDTLVKLAHHENIRGVK  117 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~~p~i~giK  117 (198)
                       ..|  ++++.+.++.+.+++.|+=
T Consensus       163 -iGG--I~~~N~~~~l~agga~~v~  184 (224)
T 1vhc_A          163 -TGG--IGLHNIRDYLAIPNIVACG  184 (224)
T ss_dssp             -BSS--CCTTTHHHHHTSTTBCCEE
T ss_pred             -ECC--cCHHHHHHHHhcCCCEEEE
Confidence             234  5667888888776655553

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=88.95  E-value=7.5  Score=30.91  Aligned_cols=92  Identities=12%  Similarity=0.061  Sum_probs=59.8

Q ss_pred             CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711          24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV   94 (198)
Q Consensus        24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~   94 (198)
                      +..||+=+--.|.        .+..++++.+++.||+++.+. -|.|+..+  .+    |.+.+.+.+++||+.=++   
T Consensus        58 ~~~vIaE~KraSPSkG~i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs--~~----~L~~ir~~v~lPVl~Kdf---  128 (272)
T 3tsm_A           58 QFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGA--PE----FLTAARQACSLPALRKDF---  128 (272)
T ss_dssp             CCEEEEEECSEETTTEESCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCCC--HH----HHHHHHHTSSSCEEEESC---
T ss_pred             CceEEEEeccCCCCCCccCCCCCHHHHHHHHHHCCCCEEEEeccccccCCC--HH----HHHHHHHhcCCCEEECCc---
Confidence            4678887644432        367899999999999999886 45566554  54    668888889999985442   


Q ss_pred             cccccCHHHHHHHHcCC-CEEEEeeC--CHHHHHHH
Q psy9711          95 TNIDISVDTLVKLAHHE-NIRGVKDT--DNIKLANM  127 (198)
Q Consensus        95 tg~~l~~~~l~~L~~~p-~i~giK~s--d~~~~~~~  127 (198)
                         -+++..+.+..... ..+-+-.+  +...+.++
T Consensus       129 ---i~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l  161 (272)
T 3tsm_A          129 ---LFDPYQVYEARSWGADCILIIMASVDDDLAKEL  161 (272)
T ss_dssp             ---CCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHH
T ss_pred             ---cCCHHHHHHHHHcCCCEEEEcccccCHHHHHHH
Confidence               34555565555432 44444444  44444443

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=88.92  E-value=1.4  Score=36.40  Aligned_cols=119  Identities=10%  Similarity=0.084  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|..  +    ++ .+.++.+.+++++
T Consensus       166 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~~--~----~d-~~~~~~l~~~~~i  236 (356)
T 3ro6_B          166 DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFI--EQPFP--A----GR-TDWLRALPKAIRR  236 (356)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCE--ECCSC--T----TC-HHHHHTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE--ECCCC--C----Cc-HHHHHHHHhcCCC
Confidence            4556667788888876  78888754 45578999999999999887654  34531  2    11 3556777777889


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc---CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH---HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      ||+.=      ..-.+++.+.++.+   .-.++-+|-+   .+....++......-++.+..|
T Consensus       237 PIa~d------E~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~  293 (356)
T 3ro6_B          237 RIAAD------ESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWG  293 (356)
T ss_dssp             TEEES------TTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CEEeC------CcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEec
Confidence            98873      23456788888885   4688899987   4554444432111234555544

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=88.69  E-value=7.5  Score=30.56  Aligned_cols=82  Identities=12%  Similarity=0.085  Sum_probs=61.8

Q ss_pred             CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--cc
Q psy9711          24 KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DI   99 (198)
Q Consensus        24 ~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l   99 (198)
                      +.| |.+-+.+.+.++.++.++.+.+.|+|.|=+---++.... +.+.+.+-...+.+.. ++|+++=.-+..-|-  ..
T Consensus        18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~-~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~   96 (258)
T 4h3d_A           18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVE-NIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLI   96 (258)
T ss_dssp             SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTT-CHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccC-CHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence            445 556777889999999999999999999999887776543 3788888888887776 699998876665443  35


Q ss_pred             CHHHHHH
Q psy9711         100 SVDTLVK  106 (198)
Q Consensus       100 ~~~~l~~  106 (198)
                      +.+...+
T Consensus        97 ~~~~~~~  103 (258)
T 4h3d_A           97 SRDYYTT  103 (258)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5554433

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=88.59  E-value=7.6  Score=30.50  Aligned_cols=129  Identities=19%  Similarity=0.139  Sum_probs=81.1

Q ss_pred             HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711          16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      ++.+.+++.+||+.----.++-+    +..+..+|||++++..-.   .+  ++++.++++. +...++.+++==     
T Consensus        93 L~~ir~~v~lPvLrKDfi~~~~q----i~ea~~~GAD~ilLi~a~---l~--~~~l~~l~~~-a~~lGl~~lvEv-----  157 (251)
T 1i4n_A           93 VRAARNLTCRPILAKDFYIDTVQ----VKLASSVGADAILIIARI---LT--AEQIKEIYEA-AEELGMDSLVEV-----  157 (251)
T ss_dssp             HHHHHTTCCSCEEEECCCCSTHH----HHHHHHTTCSEEEEEGGG---SC--HHHHHHHHHH-HHTTTCEEEEEE-----
T ss_pred             HHHHHHhCCCCEEEeeCCCCHHH----HHHHHHcCCCEEEEeccc---CC--HHHHHHHHHH-HHHcCCeEEEEe-----
Confidence            44444545899986432222222    344888999999998663   33  6666666655 445688877632     


Q ss_pred             ccccCHHHHHHHHcC--CCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEeccc
Q psy9711          96 NIDISVDTLVKLAHH--ENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus        96 g~~l~~~~l~~L~~~--p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~  162 (198)
                         -+.+.+.+..+.  +.++|+-..       |+....+++. ..+++..+++..+    +........ ++|++-|.+
T Consensus       158 ---~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~-~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~a  232 (251)
T 1i4n_A          158 ---HSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLP-LVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTS  232 (251)
T ss_dssp             ---CSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGG-GSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHH
T ss_pred             ---CCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHH-hCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHH
Confidence               145667666655  689999764       6677777774 4455555553322    245566778 999998876


Q ss_pred             cc
Q psy9711         163 AV  164 (198)
Q Consensus       163 n~  164 (198)
                      -+
T Consensus       233 im  234 (251)
T 1i4n_A          233 IM  234 (251)
T ss_dssp             HH
T ss_pred             Hc
Confidence            43

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=88.50  E-value=2.7  Score=35.19  Aligned_cols=98  Identities=10%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.-  +    ++-.+.++.|.+++++
T Consensus       181 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~~--~----~d~~~~~~~l~~~~~i  252 (392)
T 3ddm_A          181 DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWL--EEPLR--A----DRPAAEWAELAQAAPM  252 (392)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEE--ECCSC--T----TSCHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEE--ECCCC--c----cchHHHHHHHHHhcCC
Confidence            4566677888888886  78888855 55678999999999999987754  34541  1    1114667888888999


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ||+.=.      .-.+++.+.++.+  .-.++-+|-+
T Consensus       253 PIa~dE------~~~~~~~~~~~i~~~a~d~v~~k~~  283 (392)
T 3ddm_A          253 PLAGGE------NIAGVAAFETALAARSLRVMQPDLA  283 (392)
T ss_dssp             CEEECT------TCCSHHHHHHHHHHTCEEEECCCTT
T ss_pred             CEEeCC------CCCCHHHHHHHHHcCCCCEEEeCcc
Confidence            998732      3456888888874  3467777776

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=88.48  E-value=2.1  Score=32.79  Aligned_cols=74  Identities=8%  Similarity=0.004  Sum_probs=49.0

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD  102 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~  102 (198)
                      +++++.|+.+  ..|    ++.|.+.|+|.+.+-|     ..  .-+=.+|.+.+.... ++|++-     ..|  ++++
T Consensus       109 g~~~i~G~~t--~~e----~~~A~~~Gad~v~~Fp-----a~--~~gG~~~lk~i~~~~~~ipvva-----iGG--I~~~  168 (214)
T 1wbh_A          109 TIPLIPGIST--VSE----LMLGMDYGLKEFKFFP-----AE--ANGGVKALQAIAGPFSQVRFCP-----TGG--ISPA  168 (214)
T ss_dssp             SSCEEEEESS--HHH----HHHHHHTTCCEEEETT-----TT--TTTHHHHHHHHHTTCTTCEEEE-----BSS--CCTT
T ss_pred             CCCEEEecCC--HHH----HHHHHHCCCCEEEEec-----Cc--cccCHHHHHHHhhhCCCCeEEE-----ECC--CCHH
Confidence            7888888543  333    4667789999999833     11  111257888998877 688864     234  5567


Q ss_pred             HHHHHHcCCCEEEEe
Q psy9711         103 TLVKLAHHENIRGVK  117 (198)
Q Consensus       103 ~l~~L~~~p~i~giK  117 (198)
                      .+.++.+.+++.|+=
T Consensus       169 n~~~~l~agg~~~v~  183 (214)
T 1wbh_A          169 NYRDYLALKSVLCIG  183 (214)
T ss_dssp             THHHHHTSTTBSCEE
T ss_pred             HHHHHHhcCCCeEEE
Confidence            888888776555553

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=88.40  E-value=3.9  Score=34.51  Aligned_cols=95  Identities=13%  Similarity=0.063  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.+++++  ++++++=+ ++-+.++++++++..++.|++.+  --|.  .+    ++ .+.++.|.+++++||
T Consensus       214 ~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~i--EeP~--~~----~d-~~~~~~l~~~~~iPI  284 (412)
T 3stp_A          214 RENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWL--EEPV--IA----DD-VAGYAELNAMNIVPI  284 (412)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS--CT----TC-HHHHHHHHHTCSSCE
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Cc----cc-HHHHHHHHhCCCCCE
Confidence            44566778888877  78888855 55678999999999999988754  3453  12    11 356688888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +.=      ..-.++..+.++.+  .-.++-+|-+
T Consensus       285 a~d------E~~~~~~~~~~li~~~a~D~v~ik~~  313 (412)
T 3stp_A          285 SGG------EHEFSVIGCAELINRKAVSVLQYDTN  313 (412)
T ss_dssp             EEC------TTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred             EeC------CCCCCHHHHHHHHHcCCCCEEecChh
Confidence            872      33457888888885  4578888887

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=88.39  E-value=2.2  Score=35.85  Aligned_cols=103  Identities=8%  Similarity=0.023  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.-  +.    + .+.++.|.+++++||
T Consensus       185 ~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i--EqP~~--~~----~-~~~~~~l~~~~~iPI  255 (401)
T 3sbf_A          185 DNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFI--EDILP--PN----Q-TEWLDNIRSQSSVSL  255 (401)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCE--ECSSC--TT----C-GGGHHHHHTTCCCCE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCCC--hh----H-HHHHHHHHhhCCCCE
Confidence            34466778888877  88988855 55678999999999999987754  34431  11    1 245788989999999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      +.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       256 a~dE------~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~ki  295 (401)
T 3sbf_A          256 GLGE------LFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKL  295 (401)
T ss_dssp             EECT------TCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred             EeCC------ccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHH
Confidence            8732      3456888888884  4688999987   45544443

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=88.37  E-value=2.3  Score=35.22  Aligned_cols=118  Identities=12%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++  .+--|.  .+.  +   .+.++.|.+++++|
T Consensus       171 ~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~--~~~--~---~~~~~~l~~~~~iP  241 (370)
T 1chr_A          171 PQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPV--GRE--N---TQALRRLSDNNRVA  241 (370)
T ss_dssp             SHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEE--EEECCS--CTT--C---HHHHHHHHHHSCSE
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCC--Ccc--c---HHHHHHHHhhCCCC
Confidence            455567788888887  68888754 455688999999999998754  344564  121  2   35678888889999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |+.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++......-++.+..|
T Consensus       242 ia~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~  296 (370)
T 1chr_A          242 IMADE------SLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGG  296 (370)
T ss_dssp             EEESS------SCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEEC
T ss_pred             EEeCC------CcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEec
Confidence            98732      2356788888885  4689999988   4555444432111234555544

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=88.37  E-value=1.7  Score=36.51  Aligned_cols=86  Identities=13%  Similarity=0.076  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-----------CCCcCCCCCHHHHHHHHHH
Q psy9711          10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-----------PYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-----------P~y~~~~~~~~~i~~y~~~   77 (198)
                      +.-.++++.+.+.. ++||++|... +    .+.++.+.++|+|++.+..           +.+..+   +-+.+....+
T Consensus       179 ~~~~e~i~~ir~~~~~~pviv~~v~-~----~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p---~~~~l~~v~~  250 (404)
T 1eep_A          179 TRIIELIKKIKTKYPNLDLIAGNIV-T----KEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVP---QITAICDVYE  250 (404)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEEC-S----HHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCeEEEcCCC-c----HHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcc---hHHHHHHHHH
Confidence            45567788888877 8999974222 2    4677888899999999921           111111   3334444455


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +++..++||+.      .|---+++.+.+...
T Consensus       251 ~~~~~~ipVia------~GGI~~~~d~~~ala  276 (404)
T 1eep_A          251 ACNNTNICIIA------DGGIRFSGDVVKAIA  276 (404)
T ss_dssp             HHTTSSCEEEE------ESCCCSHHHHHHHHH
T ss_pred             HHhhcCceEEE------ECCCCCHHHHHHHHH
Confidence            55566788875      333335555555554

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=88.12  E-value=9.3  Score=32.35  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=84.7

Q ss_pred             CCeEEEeCCCCc-----HHHHHHHHHHHHhcCCCEEEEc--CCCCcCC--CCCHHHHHHHHHHHHcc-------------
Q psy9711          24 KKTIIAGTYCES-----TRATIDLTQKAAKAGANAALIL--CPYYFQK--KMTEDLIYEHFISVADN-------------   81 (198)
Q Consensus        24 ~~pvi~gv~~~~-----~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~--~~~~~~i~~y~~~i~~~-------------   81 (198)
                      +.|+++.++.+.     .+|-++.++...+. +|++-+-  .|.--..  -.+++.+.+..+.|-++             
T Consensus       181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~  259 (415)
T 3i65_A          181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDE  259 (415)
T ss_dssp             TCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHH
T ss_pred             CceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhccccccccc
Confidence            467888888876     68888888888876 8887754  4542111  02467777777777654             


Q ss_pred             -------CCCC-EEEEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-------C----------------H----HH
Q psy9711          82 -------SPIP-VIIYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-------D----------------N----IK  123 (198)
Q Consensus        82 -------~~~p-i~lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-------d----------------~----~~  123 (198)
                             .++| |++==.|.     ++.+.+.+++   +--.+.||-.+       |                .    ..
T Consensus       260 ~~~~~~~~~~P~V~VKi~pd-----~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~  334 (415)
T 3i65_A          260 FLWFNTTKKKPLVFVKLAPD-----LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF  334 (415)
T ss_dssp             HHCCSSSSSCCEEEEEECSC-----CCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHH
T ss_pred             ccccccCCCCCeEEEEecCC-----CCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHH
Confidence                   3689 78766664     3433333333   21233333332       1                1    22


Q ss_pred             HHHHHhhcCCCCeEEEec--Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711         124 LANMANQTKDLNFSVFAG--SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA  176 (198)
Q Consensus       124 ~~~~~~~~~~~~~~v~~G--~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~  176 (198)
                      +.++. +..++++.|+..  ..  ......+..|++++..+.+.+.  |.++.++.+.+
T Consensus       335 I~~v~-~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L  392 (415)
T 3i65_A          335 ICEMY-NYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKREL  392 (415)
T ss_dssp             HHHHH-HHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHH
T ss_pred             HHHHH-HHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHH
Confidence            33333 334445555532  22  2456778899999999988653  77776666544

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=88.09  E-value=5.7  Score=33.04  Aligned_cols=118  Identities=8%  Similarity=0.083  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           9 EEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+  --|.  .    +++ .+.++.|.+++++||
T Consensus       176 ~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i--EqP~--~----~~d-~~~~~~l~~~~~iPI  246 (385)
T 3i6e_A          176 HAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFI--EQPV--R----AHH-FELMARLRGLTDVPL  246 (385)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCE--ECCS--C----TTC-HHHHHHHHTTCSSCE
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--C----ccc-HHHHHHHHHhCCCCE
Confidence            345566777777777 78888754 44568899999999999887643  3443  1    111 466788888899999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      ..=.      .-.++..+.++.+  .-.++-+|-+   .+....++......-++.+..|
T Consensus       247 a~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~  300 (385)
T 3i6e_A          247 LADE------SVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGG  300 (385)
T ss_dssp             EEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EEeC------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeC
Confidence            8732      2356778888874  4688999987   4554444332111234555544

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=88.09  E-value=1.6  Score=33.47  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      ++.++.++.+.+.|+|++.+..+....+.  .....+..+.+.+.+++|+++-.      .-.+++.+.++.+
T Consensus        33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~~--~~~~~~~i~~i~~~~~ipvi~~g------~i~~~~~~~~~~~   97 (253)
T 1h5y_A           33 GDPVEMAVRYEEEGADEIAILDITAAPEG--RATFIDSVKRVAEAVSIPVLVGG------GVRSLEDATTLFR   97 (253)
T ss_dssp             ECHHHHHHHHHHTTCSCEEEEECCCCTTT--HHHHHHHHHHHHHHCSSCEEEES------SCCSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCEEEEEeCCccccC--CcccHHHHHHHHHhcCCCEEEEC------CCCCHHHHHHHHH
Confidence            46789999999999999998865433333  55567788899988999999743      2345666666665

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=88.08  E-value=7.2  Score=30.98  Aligned_cols=152  Identities=9%  Similarity=-0.021  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEE--EEe
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVI--IYN   90 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~--lYn   90 (198)
                      +.++.+.+..++|++++..-.+    .+.++.+.++|||++  ..+.-..+.       +..+.+.+.. +++++  +.|
T Consensus        68 ~~i~~i~~~~~~Pvi~~~~~~~----~~~~~~~~~aGad~v--~~~~~~~~~-------~~~~~~~~~~~~i~l~~~v~~  134 (297)
T 2zbt_A           68 KIIKEIMAAVSIPVMAKVRIGH----FVEAMILEAIGVDFI--DESEVLTPA-------DEEHHIDKWKFKVPFVCGARN  134 (297)
T ss_dssp             HHHHHHHTTCSSCEEEEEETTC----HHHHHHHHHTTCSEE--EEETTSCCS-------CSSCCCCGGGCSSCEEEEESS
T ss_pred             HHHHHHHHhcCCCeEEEeccCC----HHHHHHHHHCCCCEE--eeeCCCChH-------HHHHHHHHhCCCceEEeecCC


Q ss_pred             CCCCcccccCHHHHHHHH-cCCCEEEEe---------------------------------------eC-CHHHHHHHHh
Q psy9711          91 NTFVTNIDISVDTLVKLA-HHENIRGVK---------------------------------------DT-DNIKLANMAN  129 (198)
Q Consensus        91 ~P~~tg~~l~~~~l~~L~-~~p~i~giK---------------------------------------~s-d~~~~~~~~~  129 (198)
                                ++...+.. .-..+++++                                       .. ++..+.++. 
T Consensus       135 ----------~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~-  203 (297)
T 2zbt_A          135 ----------LGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH-  203 (297)
T ss_dssp             ----------HHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH-
T ss_pred             ----------HHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH-


Q ss_pred             hcCCCCeE--EEecC--hhhHHHHhhcCCCeEEecccccch----HHHHHHHHHHHcC-CHHHHHHHHH
Q psy9711         130 QTKDLNFS--VFAGS--AGYLLSGLLVGCAGGINALSAVLG----GPICELYDLAKAG-KWEEAMKLQH  189 (198)
Q Consensus       130 ~~~~~~~~--v~~G~--d~~~~~~l~~G~~G~is~~~n~~P----~~~~~l~~~~~~g-d~~~A~~l~~  189 (198)
                      +..+-++.  +-.|-  .+.+...+..|++|++.|.+-+-.    +...++.+.+.+. +.+.+..+.+
T Consensus       204 ~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~~~~~~~~~~~~  272 (297)
T 2zbt_A          204 DHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSE  272 (297)
T ss_dssp             HHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHHhchHhhhHHHH

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=88.07  E-value=3.9  Score=34.48  Aligned_cols=104  Identities=15%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.  .+.  +   .+.++.|.+++++|
T Consensus       184 ~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~--~~~--d---~~~~~~l~~~~~iP  254 (412)
T 4e4u_A          184 LDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWF--EEPV--PPG--Q---EEAIAQVAKHTSIP  254 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEE--ECCS--CSS--C---HHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEE--ECCC--Chh--h---HHHHHHHHhhCCCC
Confidence            345566778888877  78888854 45678999999999999987754  3443  121  1   36678888899999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       255 Ia~dE------~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki  295 (412)
T 4e4u_A          255 IATGE------RLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKI  295 (412)
T ss_dssp             EEECT------TCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHH
T ss_pred             EEecC------ccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHH
Confidence            98733      2346778888874  4588889988   45544443

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=88.06  E-value=2.3  Score=35.98  Aligned_cols=102  Identities=9%  Similarity=0.017  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      +-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.-      +++ .+.++.|.+++++||+
T Consensus       207 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~i--EqP~~------~~d-~~~~~~l~~~~~iPIa  277 (422)
T 3tji_A          207 NTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFI--EDILP------PQQ-SAWLEQVRQQSCVPLA  277 (422)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCSC------GGG-GGGHHHHHHHCCCCEE
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeE--ECCCC------hhh-HHHHHHHHhhCCCCEE
Confidence            4456778888876  88888855 45678999999999999987644  34431      222 3557889899999998


Q ss_pred             EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      .=.      .-.+++.+.++.+  .-.++-+|-+   .+....++
T Consensus       278 ~dE------~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~ki  316 (422)
T 3tji_A          278 LGE------LFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKL  316 (422)
T ss_dssp             ECT------TCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred             EeC------CcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHH
Confidence            733      2345667888874  4588889987   45544443

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=88.05  E-value=7.6  Score=29.87  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=73.4

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHH-HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRAT-IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~-i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +++...+..+.+|++=+--.+..++ -..++.+.++|+|.+-+.+ +   ..  .+.+....+.+ +..+..+++=..-+
T Consensus        55 ~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~-~---~G--~~~l~~~~~~~-~~~g~~v~vLt~~s  127 (228)
T 3m47_A           55 IIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHG-F---PG--ADSVRACLNVA-EEMGREVFLLTEMS  127 (228)
T ss_dssp             HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES-T---TC--HHHHHHHHHHH-HHHTCEEEEECCCC
T ss_pred             HHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEec-c---CC--HHHHHHHHHHH-HhcCCCeEEEEeCC
Confidence            3444443115667665433344544 3356677889999988853 2   12  44455544444 33344454422111


Q ss_pred             Cccc-cc-C--HHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEec-Ch---hhHHHHhhcCCCeEEeccc
Q psy9711          94 VTNI-DI-S--VDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAG-SA---GYLLSGLLVGCAGGINALS  162 (198)
Q Consensus        94 ~tg~-~l-~--~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G-~d---~~~~~~l~~G~~G~is~~~  162 (198)
                      ..+. .. .  .+.+.+++..+.+.|+..+  .+..+.++. +..+++|.++++ ..   ... ..+..|++..+.|-+
T Consensus       128 ~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~~~e~~~ir-~~~~~~~~iv~PGI~~~g~~p-~~~~aGad~iVvGr~  204 (228)
T 3m47_A          128 HPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLR-EIIGQDSFLISPGVGAQGGDP-GETLRFADAIIVGRS  204 (228)
T ss_dssp             SGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSCHHHHHHHH-HHHCSSSEEEECC----------CGGGTCSEEEECHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHhCCcEEEECCCChHHHHHHH-HhcCCCCEEEecCcCcCCCCH-hHHHcCCCEEEECHH
Confidence            1111 11 1  1334555556788999998  466666655 344565776653 21   123 778899998887743

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=88.04  E-value=2.2  Score=33.74  Aligned_cols=74  Identities=8%  Similarity=0.039  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..+++..+..+.+...+..+.+.+.++|++++.|..       .+.....++.+. ..++|+++
T Consensus        18 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~giPvV~   89 (330)
T 3uug_A           18 WIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID-------GTTLSDVLKQAG-EQGIKVIA   89 (330)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS-------GGGGHHHHHHHH-HTTCEEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC-------chhHHHHHHHHH-HCCCCEEE
Confidence            344555555554   7777666677788888899999989999999997653       222223444443 46999999


Q ss_pred             EeCCC
Q psy9711          89 YNNTF   93 (198)
Q Consensus        89 Yn~P~   93 (198)
                      +|.+.
T Consensus        90 ~~~~~   94 (330)
T 3uug_A           90 YDRLI   94 (330)
T ss_dssp             ESSCC
T ss_pred             ECCCC
Confidence            98743

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=87.88  E-value=3.3  Score=35.25  Aligned_cols=103  Identities=9%  Similarity=0.047  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      ++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.-      +++ .+.++.|.+++++||
T Consensus       224 ~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~~------~~d-~~~~~~l~~~~~iPI  294 (440)
T 3t6c_A          224 KSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFL--EDPVA------PEN-TEWLKMLRQQSSTPI  294 (440)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEE--ECSSC------GGG-GGGHHHHHHHCCSCE
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEE--ECCCC------hhh-HHHHHHHHhhcCCCE
Confidence            34466788888877  78888855 55678999999999999987654  34431      222 345788888999999


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      +.=.      .-.+.+.+.++.+  .-.++-+|-+   .+....++
T Consensus       295 a~dE------~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~i  334 (440)
T 3t6c_A          295 AMGE------LFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKI  334 (440)
T ss_dssp             EECT------TCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred             EeCc------ccCCHHHHHHHHHcCCccceeechhhhCCHHHHHHH
Confidence            8732      3456888888884  4688999987   45544443

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A

Probab=87.74  E-value=4.7  Score=31.95  Aligned_cols=101  Identities=9%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      .+++.+.+.- |+--++|+--...+++++..+.+.+.|+.|+-+.+.+.. ....+++.+...|+.. +..++||+++--
T Consensus        81 ~~~~~~~~~p~r~~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~~~~~~~~~~~~~~d~~~~~~~~~a-~e~glpv~iH~~  159 (291)
T 3irs_A           81 DVAAVAKAYPDKFHPVGSIEAATRKEAMAQMQEILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFC-EDNGIPVIMMTG  159 (291)
T ss_dssp             HHHHHHHHSTTTEEEEEECCCSSHHHHHHHHHHHHHTTCCCEEECGGGSSSCCCTTCGGGHHHHHHH-HHTTCCEEEECS
T ss_pred             HHHHHHHHCCCcEEEEEecCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHcCCeEEEeCC
Confidence            3444444433 555567776555677777777788999999998743321 1111256666666655 457999999975


Q ss_pred             CCCccc--c-cCHHHHHHHH-cCCCEEEE
Q psy9711          92 TFVTNI--D-ISVDTLVKLA-HHENIRGV  116 (198)
Q Consensus        92 P~~tg~--~-l~~~~l~~L~-~~p~i~gi  116 (198)
                      .. .|.  . -.+..+.+++ ++|++..+
T Consensus       160 ~~-~~~~~~~~~p~~~~~v~~~~P~l~iv  187 (291)
T 3irs_A          160 GN-AGPDITYTNPEHIDRVLGDFPDLTVV  187 (291)
T ss_dssp             SS-CSSSGGGGCHHHHHHHHHHCTTCCEE
T ss_pred             CC-CCCCCccCCHHHHHHHHHHCCCCEEE
Confidence            42 111  1 1355677777 68987544

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=87.73  E-value=5  Score=31.25  Aligned_cols=107  Identities=11%  Similarity=-0.016  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCC--------------------CC-----cHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTY--------------------CE-----STRATIDLTQKAAKAGANAALILCPY   60 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~--------------------~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~   60 (198)
                      .++.++..++.+.+.+. ++.+.+...                    ..     +.+...+.++.|+++|+..+.+.+.+
T Consensus        47 ~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~  125 (290)
T 3tva_A           47 TRTREHAQAFRAKCDAA-GIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGF  125 (290)
T ss_dssp             GCSHHHHHHHHHHHHHT-TCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHc-CCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            36677777776666555 666544321                    00     12445667788889999999987654


Q ss_pred             CcCCC-CCHHHHHHHHHHHHc---cCCCCEEEEeCCCCcccccCHHHHHHHHc---CCCEEEEeeC
Q psy9711          61 YFQKK-MTEDLIYEHFISVAD---NSPIPVIIYNNTFVTNIDISVDTLVKLAH---HENIRGVKDT  119 (198)
Q Consensus        61 y~~~~-~~~~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~giK~s  119 (198)
                      ..... ...+.+.+.++.+++   ..++.+.+.|.+.      +++.+.+|.+   .|++--.=|.
T Consensus       126 ~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~------~~~~~~~l~~~~~~~~~g~~~D~  185 (290)
T 3tva_A          126 VPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQE------SADHLLEFIEDVNRPNLGINFDP  185 (290)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSS------CHHHHHHHHHHHCCTTEEEEECH
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC------CHHHHHHHHHhcCCCCEEEEecc
Confidence            32111 013455666676665   3478888888752      5777777773   4776554443

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=87.70  E-value=0.87  Score=36.40  Aligned_cols=53  Identities=15%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCc--------HHHHHHHHHHHHhcCCCEEEEcC
Q psy9711           4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCES--------TRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~--------~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +..|+.++|.++++.+.+.  ..|+.-+|.-+        +.+-|++++..-++||+.|++-.
T Consensus       133 ti~l~~~~~~~lI~~a~~~--f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa  193 (276)
T 1u83_A          133 TLPMTNKEKAAYIADFSDE--FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA  193 (276)
T ss_dssp             SSCCCHHHHHHHHHHHTTT--SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred             cccCCHHHHHHHHHHHHhh--cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence            3578999999999977665  77777666543        47889999999999999999963

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=87.69  E-value=3.4  Score=31.78  Aligned_cols=81  Identities=17%  Similarity=0.024  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH-HHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHHHc-C-
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI-YEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKLAH-H-  110 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i-~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~-  110 (198)
                      +...+.++.|+++|++.+.+.|.......  .+.+ .+.++.+++.   .++.+.+-|.+......-+++.+.+|.+ + 
T Consensus        85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~--~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~  162 (272)
T 2q02_A           85 KKTEGLLRDAQGVGARALVLCPLNDGTIV--PPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAG  162 (272)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECCCCSSBCC--CHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEEccCCCchhH--HHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHhC
Confidence            45567778889999999988654332222  5666 7777777654   4788888887522223346777777773 3 


Q ss_pred             CCEEEEeeC
Q psy9711         111 ENIRGVKDT  119 (198)
Q Consensus       111 p~i~giK~s  119 (198)
                      ||+--.=|.
T Consensus       163 ~~~g~~~D~  171 (272)
T 2q02_A          163 SPFKVLLDT  171 (272)
T ss_dssp             CCCEEEEEH
T ss_pred             cCeEEEEEc
Confidence            665444343

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=87.67  E-value=0.66  Score=25.47  Aligned_cols=28  Identities=21%  Similarity=0.092  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhchh
Q psy9711         168 PICELYDLAKAGKWEEAMKLQHRLVKPD  195 (198)
Q Consensus       168 ~~~~l~~~~~~gd~~~A~~l~~~~~~l~  195 (198)
                      +=.+||-++.+||++.++.|-.++..++
T Consensus        13 iEQqiyvA~seGd~etv~~Le~QL~~lR   40 (40)
T 1gp8_A           13 IRKQMDAAASKGDVETYRKLKAKLKGIR   40 (40)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            4467899999999999999998886553

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=87.61  E-value=4.2  Score=33.79  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711          14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +.++.+++..++||++ |+  .+    .+.++.+.++|+|++.+..
T Consensus       219 ~~i~~lr~~~~~PvivK~v--~~----~e~a~~a~~~Gad~I~vs~  258 (368)
T 2nli_A          219 RDIEEIAGHSGLPVFVKGI--QH----PEDADMAIKRGASGIWVSN  258 (368)
T ss_dssp             HHHHHHHHHSSSCEEEEEE--CS----HHHHHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHcCCCEEEEcC--CC----HHHHHHHHHcCCCEEEEcC
Confidence            3466666666899988 55  22    4567889999999999965

>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}

Probab=87.60  E-value=11  Score=31.08  Aligned_cols=151  Identities=13%  Similarity=0.083  Sum_probs=86.3

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCC----CEEEEcCCCCcCCCCC-----------------HHHHHHHHHHH---
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGA----NAALILCPYYFQKKMT-----------------EDLIYEHFISV---   78 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Ga----d~v~~~~P~y~~~~~~-----------------~~~i~~y~~~i---   78 (198)
                      |.-||+| ++-.+.+.+++.|+..+++|.    +.+.++--|++||.-+                 -++=+...+.+   
T Consensus        50 rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRTs~g~kGL~nDP~ld~s~~i~~GL~~~R~ll~~  129 (346)
T 3tqk_A           50 RVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRTTIGWKGFINDPDLDNSYNINKGLRLARNLLSD  129 (346)
T ss_dssp             SEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSSCSCCCTTTCTTSSSCCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCCCcCccccccCCCCCCCccHHHHHHHHHHHHHH
Confidence            6778999 888899999999999998873    5667777777777412                 03444554443   


Q ss_pred             HccCCCCEEEE--eC--CCC----------cccccCHHHHHHHH-cCCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEe
Q psy9711          79 ADNSPIPVIIY--NN--TFV----------TNIDISVDTLVKLA-HHENIRGVKDT---DNIKLANMANQTKDLNFSVFA  140 (198)
Q Consensus        79 ~~~~~~pi~lY--n~--P~~----------tg~~l~~~~l~~L~-~~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~  140 (198)
                      .+.+++|++-=  |.  |..          .-.+..-.+..+++ ....=||+|..   ++.....-+.....+.--+..
T Consensus       130 ~~e~GLpiatE~ld~~~~qyv~dlvs~~aIGARt~enq~hre~asg~s~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~  209 (346)
T 3tqk_A          130 LTNMGLPCATEFLDVITPQYFAELITWGAIGARTVESQVHRELASGLSASIGFKNATNGDVQVAVDAVKSATYPHHFLST  209 (346)
T ss_dssp             HHHTTCCEEEECCSSSGGGGTGGGCSEEEECGGGTTCHHHHHHHTTCSSEEEEECCTTCCSHHHHHHHHHHTSCCEEEEE
T ss_pred             HHhcCCCEEEEecCcCCHHHHHHHhheeeeCcccccCHHHHHHhcCCCCceEEeCCCCCchHHHhhHHHHHhCCceEEee
Confidence            25678999732  11  111          01123335667887 68888999998   554433333233344432333


Q ss_pred             cChhhHH----------HHhhcCCCeEEecccccchHHHHHHHHHHHc
Q psy9711         141 GSAGYLL----------SGLLVGCAGGINALSAVLGGPICELYDLAKA  178 (198)
Q Consensus       141 G~d~~~~----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~  178 (198)
                      +.++...          .....|+.    ...|+-++-+.+..+.+.+
T Consensus       210 ~~~G~~aiv~T~GN~~~HvILRGg~----~gpNY~~~~v~~a~~~l~k  253 (346)
T 3tqk_A          210 TKSGSTAIFATKGNQNGHVILRGGA----SGPNFSKEHVDDCIAKLKK  253 (346)
T ss_dssp             CTTSCEEEEECCCCSCEEEEECCCT----TCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCEEEEecCCC----CCCCCCHHHHHHHHHHHHh
Confidence            3222111          11233432    2367777776666655543

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=87.58  E-value=0.38  Score=37.48  Aligned_cols=47  Identities=21%  Similarity=0.077  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ   63 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~   63 (198)
                      .++++.+.+..++||+++-+-.+.++    ++.+.+.|||++++....+..
T Consensus        68 ~~~i~~i~~~~~ipvi~~Ggi~~~~~----~~~~l~~Gad~V~ig~~~l~d  114 (247)
T 3tdn_A           68 TEMIRFVRPLTTLPIIASGGAGKMEH----FLEAFLRGADKVSINTAAVEN  114 (247)
T ss_dssp             HHHHHHHGGGCCSCEEEESCCCSHHH----HHHHHHTTCSEECCSHHHHHC
T ss_pred             HHHHHHHHHhCCCCEEEeCCCCCHHH----HHHHHHcCCCeeehhhHHhhC
Confidence            35666666655999999766655544    444456799999998766543

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=87.40  E-value=6.6  Score=32.91  Aligned_cols=108  Identities=16%  Similarity=0.051  Sum_probs=65.0

Q ss_pred             CeEEE--eCCCC-cHHHHHHHHHHHHhcCCCEEEEc--------CCC---CcCCC-------------CCHHHHHHHHHH
Q psy9711          25 KTIIA--GTYCE-STRATIDLTQKAAKAGANAALIL--------CPY---YFQKK-------------MTEDLIYEHFIS   77 (198)
Q Consensus        25 ~pvi~--gv~~~-~~~~~i~~a~~a~~~Gad~v~~~--------~P~---y~~~~-------------~~~~~i~~y~~~   77 (198)
                      +-||+  |+.++ |.+.+.++++.|+++|||+|=..        .|+   |..++             ....+-.....+
T Consensus        29 ~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~  108 (385)
T 1vli_A           29 VFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLD  108 (385)
T ss_dssp             CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHH
T ss_pred             cEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHH
Confidence            55788  44343 68999999999999999998764        343   22110             012334455666


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEEecCh
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFAGSA  143 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~~G~d  143 (198)
                      .|+..+++++-        ..++.+.+..|.++ ++-.+|-.     |...+..+-  ..+..+-+-+|..
T Consensus       109 ~~~~~Gi~~~s--------tpfD~~svd~l~~~-~vd~~KIgS~~~~N~pLL~~va--~~gKPViLStGma  168 (385)
T 1vli_A          109 YCREKQVIFLS--------TVCDEGSADLLQST-SPSAFKIASYEINHLPLLKYVA--RLNRPMIFSTAGA  168 (385)
T ss_dssp             HHHHTTCEEEC--------BCCSHHHHHHHHTT-CCSCEEECGGGTTCHHHHHHHH--TTCSCEEEECTTC
T ss_pred             HHHHcCCcEEE--------ccCCHHHHHHHHhc-CCCEEEECcccccCHHHHHHHH--hcCCeEEEECCCC
Confidence            77777777762        13556666666543 45667776     445555443  2455666667754

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=87.33  E-value=2.6  Score=33.87  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=42.1

Q ss_pred             CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC--HHHHHHHHHHHHccCCCCEEE
Q psy9711          34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMT--EDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~--~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ...++..+.++.+.+.|.|++++.  ..   ..|  ++.+.+..+.|-+.+++|+++
T Consensus        50 ~~~~~~~~~~~~~~~sGtDai~VG--S~---~vt~~~~~~~~~v~~ik~~~~lPvil  101 (286)
T 3vk5_A           50 VPVTEAVEKAAELTRLGFAAVLLA--ST---DYESFESHMEPYVAAVKAATPLPVVL  101 (286)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCEEEE--CS---CCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCcHHHHHHHHHHHhcCCCEEEEc--cC---CCCcchHHHHHHHHHHHHhCCCCEEE
Confidence            356788889999999999999998  22   135  788999999999889999999

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=87.32  E-value=4  Score=31.56  Aligned_cols=73  Identities=11%  Similarity=0.080  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..+++..+..+.+...+..+...+.++|++++.|.. .. .  ..+   .++.+ ...++|+++
T Consensus        16 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~-~--~~~---~~~~~-~~~~iPvV~   87 (283)
T 2ioy_A           16 FVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVD-SD-A--VVT---AIKEA-NSKNIPVIT   87 (283)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-TT-T--THH---HHHHH-HHTTCCEEE
T ss_pred             HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCc-hh-h--hHH---HHHHH-HHCCCeEEE
Confidence            445555555544   6777666556677777788888888999999987542 11 1  122   23343 346899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      .|.+
T Consensus        88 ~~~~   91 (283)
T 2ioy_A           88 IDRS   91 (283)
T ss_dssp             ESSC
T ss_pred             ecCC
Confidence            9864

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=87.31  E-value=5.2  Score=34.58  Aligned_cols=94  Identities=13%  Similarity=0.076  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC-CCCc-----C--CCCCHHHHHHHHHHHHc
Q psy9711          11 EKLKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILC-PYYF-----Q--KKMTEDLIYEHFISVAD   80 (198)
Q Consensus        11 Er~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~y~-----~--~~~~~~~i~~y~~~i~~   80 (198)
                      .-.++++.+.+.. ++||++| +.      +.+.++.+.++|+|++.+.. |-..     .  ....+..-.....++++
T Consensus       282 ~~~~~i~~i~~~~~~~pvi~~~v~------t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~  355 (514)
T 1jcn_A          282 YQIAMVHYIKQKYPHLQVIGGNVV------TAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYAR  355 (514)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHG
T ss_pred             hHHHHHHHHHHhCCCCceEecccc------hHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHh
Confidence            3457788888888 8999985 52      24568888999999998842 2211     0  00114556677888888


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV  116 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi  116 (198)
                      ..++||+.      +|---+++.+.+.... -..+++
T Consensus       356 ~~~ipVia------~GGI~~~~di~kala~GAd~V~i  386 (514)
T 1jcn_A          356 RFGVPIIA------DGGIQTVGHVVKALALGASTVMM  386 (514)
T ss_dssp             GGTCCEEE------ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             hCCCCEEE------ECCCCCHHHHHHHHHcCCCeeeE
Confidence            88999886      3333355555555443 344444

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=87.20  E-value=0.8  Score=37.61  Aligned_cols=85  Identities=12%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      ++++.+.+..++||+ ++.|+-.+.+-+...   .++|+|++++..-.+-..+  +....+-|....+.       ||  
T Consensus       230 ell~~i~~~~~IPVV~VAeGGI~Tpeda~~~---l~~GaDgV~VGsaI~~a~d--P~~aar~l~~ai~~-------~~--  295 (330)
T 2yzr_A          230 EVLLEVKKLGRLPVVNFAAGGVATPADAALM---MQLGSDGVFVGSGIFKSEN--PLERARAIVEATYN-------YD--  295 (330)
T ss_dssp             HHHHHHHHHTSCSSEEEECSCCCSHHHHHHH---HHTTCSCEEESHHHHTSSC--HHHHHHHHHHHHHT-------TT--
T ss_pred             HHHHHHHHhCCCCeEEEEECCCCCHHHHHHH---HHcCcCEEeeHHHHhcCCC--HHHHHHHHHHHHHh-------cC--
Confidence            666666665589987 688888654444333   3459999999988876665  77777777666542       22  


Q ss_pred             CCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711          93 FVTNIDISVDTLVKLAH-H-ENIRGVKDT  119 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~-~-p~i~giK~s  119 (198)
                             .|+.+.++.+ + ...+|+-.+
T Consensus       296 -------~~~~~~~~s~~~~~~m~g~~~~  317 (330)
T 2yzr_A          296 -------KPDIVAEVSKNLGEAMKGIDIT  317 (330)
T ss_dssp             -------CHHHHHHHHTTCCCCCCC----
T ss_pred             -------CHHHHHHHHhcccccCcCcccc
Confidence                   4678888884 5 356666544

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=87.17  E-value=4.4  Score=30.89  Aligned_cols=73  Identities=8%  Similarity=0.053  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhc---CCeEEEeC--CCCcHHHHHHHHHHHHhcC-CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711          12 KLKIISTLRQET---KKTIIAGT--YCESTRATIDLTQKAAKAG-ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv--~~~~~~~~i~~a~~a~~~G-ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      ..++++-+.+++   +..++...  +..+.+...+..+.+.+.+ +|++++.+.... .   .+   ..++.+ ...++|
T Consensus        15 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~-~---~~---~~~~~~-~~~~ip   86 (276)
T 3ksm_A           15 WRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE-D---LT---PSVAQY-RARNIP   86 (276)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT-T---TH---HHHHHH-HHTTCC
T ss_pred             HHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHH-H---HH---HHHHHH-HHCCCc
Confidence            344555555554   77776655  4567788888999999999 999999865321 1   22   233444 346999


Q ss_pred             EEEEeCC
Q psy9711          86 VIIYNNT   92 (198)
Q Consensus        86 i~lYn~P   92 (198)
                      ++++|.+
T Consensus        87 vV~~~~~   93 (276)
T 3ksm_A           87 VLVVDSD   93 (276)
T ss_dssp             EEEESSC
T ss_pred             EEEEecC
Confidence            9999864

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=87.14  E-value=3.7  Score=34.19  Aligned_cols=90  Identities=21%  Similarity=0.141  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHH
Q psy9711           9 EEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVA   79 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~   79 (198)
                      .++..+.++.+.+.. ++||++|...     +.+.++.+.++|||++.+. -|-....+       ..+-..+.-..+.+
T Consensus       133 ~~~~~~~I~~ik~~~p~v~Vi~G~v~-----t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~  207 (366)
T 4fo4_A          133 SEGVLQRIRETRAAYPHLEIIGGNVA-----TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVA  207 (366)
T ss_dssp             SHHHHHHHHHHHHHCTTCEEEEEEEC-----SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCceEeeeeC-----CHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHH
Confidence            345667777787777 8899887332     2456777888999999983 12111000       01333444445555


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +.+++||+-      .|---++..+.+...
T Consensus       208 ~~~~iPVIA------~GGI~~~~di~kala  231 (366)
T 4fo4_A          208 NEYGIPVIA------DGGIRFSGDISKAIA  231 (366)
T ss_dssp             GGGTCCEEE------ESCCCSHHHHHHHHH
T ss_pred             hhcCCeEEE------eCCCCCHHHHHHHHH
Confidence            667899886      333335555555543

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=87.11  E-value=4  Score=32.07  Aligned_cols=71  Identities=8%  Similarity=0.090  Sum_probs=48.3

Q ss_pred             HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      ++++-+.+++   +..++...+..+.....+..+.+.+.++|++++.+.....       +...++.+. ..++|+++++
T Consensus        19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~-~~~iPvV~~~   90 (313)
T 3m9w_A           19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV-------LSNVVKEAK-QEGIKVLAYD   90 (313)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-------CHHHHHHHH-TTTCEEEEES
T ss_pred             HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-------hHHHHHHHH-HCCCeEEEEC
Confidence            3444444444   7777666666778888889999999999999998764221       123444443 4689999998


Q ss_pred             CC
Q psy9711          91 NT   92 (198)
Q Consensus        91 ~P   92 (198)
                      .+
T Consensus        91 ~~   92 (313)
T 3m9w_A           91 RM   92 (313)
T ss_dssp             SC
T ss_pred             Cc
Confidence            74

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=87.09  E-value=2.7  Score=36.58  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711          14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +.++.+++..++||++ |+.+      .+.++.+.++|+|++.+..
T Consensus       333 ~~i~~lr~~~~~PvivKgv~~------~e~A~~a~~aGad~I~vs~  372 (511)
T 1kbi_A          333 KDIEELKKKTKLPIVIKGVQR------TEDVIKAAEIGVSGVVLSN  372 (511)
T ss_dssp             HHHHHHHHHCSSCEEEEEECS------HHHHHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHhCCcEEEEeCCC------HHHHHHHHHcCCCEEEEcC
Confidence            3467776666899988 4553      4568889999999999964

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=87.00  E-value=9.5  Score=32.67  Aligned_cols=87  Identities=16%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC-----------CcCCCCCHHHHHHHHHH
Q psy9711          10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY-----------YFQKKMTEDLIYEHFIS   77 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~-----------y~~~~~~~~~i~~y~~~   77 (198)
                      ....+.++.+.+.. ++||++|-+. +.++    ++.+.++|+|++.+..-.           +..|   +-..+.....
T Consensus       263 ~~~~e~i~~i~~~~p~~pvi~g~~~-t~e~----a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p---~~~~l~~v~~  334 (494)
T 1vrd_A          263 RRVIETLEMIKADYPDLPVVAGNVA-TPEG----TEALIKAGADAVKVGVGPGSICTTRVVAGVGVP---QLTAVMECSE  334 (494)
T ss_dssp             HHHHHHHHHHHHHCTTSCEEEEEEC-SHHH----HHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCceEEeCCcC-CHHH----HHHHHHcCCCEEEEcCCCCccccccccCCCCcc---HHHHHHHHHH
Confidence            45567788888877 8999887432 3444    477788999999984311           1112   4444455555


Q ss_pred             HHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      .+...++||+.      +|---+++.+.+....
T Consensus       335 ~~~~~~ipvia------~GGI~~~~di~kala~  361 (494)
T 1vrd_A          335 VARKYDVPIIA------DGGIRYSGDIVKALAA  361 (494)
T ss_dssp             HHHTTTCCEEE------ESCCCSHHHHHHHHHT
T ss_pred             HHhhcCCCEEE------ECCcCCHHHHHHHHHc
Confidence            55556888876      3444466666665544

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=86.97  E-value=2.2  Score=35.36  Aligned_cols=96  Identities=11%  Similarity=0.075  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++  .+--|.-  +.  +   .+.++.|.+++++|
T Consensus       180 ~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~--~~--d---~~~~~~l~~~~~iP  250 (372)
T 3tj4_A          180 PNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIY--WFEEPLW--YD--D---VTSHARLARNTSIP  250 (372)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEE--EEESCSC--TT--C---HHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCC--EEECCCC--ch--h---HHHHHHHHhhcCCC
Confidence            455566677777766  66776644 444677777777777766543  3344531  11  1   35566777777888


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      |+.=.      .-.+++.+.++.+  ...++-+|-+
T Consensus       251 Ia~dE------~~~~~~~~~~~i~~~~~d~v~~k~~  280 (372)
T 3tj4_A          251 IALGE------QLYTVDAFRSFIDAGAVAYVQPDVT  280 (372)
T ss_dssp             EEECT------TCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred             EEeCC------CccCHHHHHHHHHcCCCCEEEeCcc
Confidence            77632      2345677777763  4577778777

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=86.90  E-value=4.2  Score=31.62  Aligned_cols=80  Identities=10%  Similarity=0.038  Sum_probs=55.7

Q ss_pred             EEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--ccCHH
Q psy9711          27 IIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DISVD  102 (198)
Q Consensus        27 vi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l~~~  102 (198)
                      |.+-+.+ .+.++.++.++.+.+.|+|.+=+---++...+  .+.+.+-.+.+-+.+ ++|+++-.-+...|-  ..+.+
T Consensus         6 Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~--~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~   83 (238)
T 1sfl_A            6 VVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVT--VDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTND   83 (238)
T ss_dssp             EEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCC--HHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHH
T ss_pred             EEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCC--HHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHH
Confidence            5556677 78899999999999999999999988876655  777887777777766 799988776554443  46666


Q ss_pred             HHHHHH
Q psy9711         103 TLVKLA  108 (198)
Q Consensus       103 ~l~~L~  108 (198)
                      ...+|.
T Consensus        84 ~~~~ll   89 (238)
T 1sfl_A           84 SYLNLI   89 (238)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=86.85  E-value=2.2  Score=35.68  Aligned_cols=97  Identities=6%  Similarity=0.038  Sum_probs=67.6

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++++=+ ++-+.+++++.++..++.|++.+  --|.  ++    ++ .+.++.|.+++++
T Consensus       201 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~----~d-~~~~~~l~~~~~i  271 (390)
T 3ugv_A          201 DPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWI--EEPV--VY----DN-FDGYAQLRHDLKT  271 (390)
T ss_dssp             SHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEE--ECCS--CT----TC-HHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Cc----cc-HHHHHHHHHhcCC
Confidence            3456667788888776  78887754 45578899999999998887643  3443  11    11 3456788888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ||..=.      .-.++..+.++.+  ...++-+|-+
T Consensus       272 PIa~dE------~~~~~~~~~~~i~~~a~d~v~ik~~  302 (390)
T 3ugv_A          272 PLMIGE------NFYGPREMHQALQAGACDLVMPDFM  302 (390)
T ss_dssp             CEEECT------TCCSHHHHHHHHHTTCCSEECCBHH
T ss_pred             CEEeCC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence            998733      2356778888874  4678888877

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=86.85  E-value=5.7  Score=32.98  Aligned_cols=118  Identities=11%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++++=+ ++-+.+++++.++..++.|+..  +--|.  ++    ++ .+-++.+.+++++|
T Consensus       177 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~--iEqP~--~~----~d-~~~~~~l~~~~~ip  247 (382)
T 3dgb_A          177 VDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDL--IEQPI--SR----NN-RAGMVRLNASSPAP  247 (382)
T ss_dssp             HHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCC--EECCB--CT----TC-HHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCe--eeCCC--Cc----cC-HHHHHHHHHhCCCC
Confidence            455566778887776  68888754 5567899999999999987653  33453  12    11 35567788889999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |..=.      ...+...+.++.+  .-+++-+|-+   .+....++......-++.+..|
T Consensus       248 Ia~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~  302 (382)
T 3dgb_A          248 IMADE------SIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGG  302 (382)
T ss_dssp             EEEST------TCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC
T ss_pred             EEeCC------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeec
Confidence            98733      2346778888874  5689999987   4555444432111234555544

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=86.79  E-value=3.7  Score=31.90  Aligned_cols=75  Identities=13%  Similarity=0.009  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHhc---CCeEEEeCCCC--cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           9 EEEKLKIISTLRQET---KKTIIAGTYCE--STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---~~pvi~gv~~~--~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ..=..++++-+.+++   +..++......  +.....+..+.+.+.++|++++.+.......       ...+.+.  .+
T Consensus        17 ~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-------~~~~~~~--~~   87 (304)
T 3o1i_D           17 DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-------HNLKSWV--GN   87 (304)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-------TTHHHHT--TT
T ss_pred             CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-------HHHHHHc--CC
Confidence            333455555555555   77776666555  7788888999999999999999865433211       2234443  68


Q ss_pred             CCEEEEeCC
Q psy9711          84 IPVIIYNNT   92 (198)
Q Consensus        84 ~pi~lYn~P   92 (198)
                      +|+++.+.+
T Consensus        88 iPvV~~~~~   96 (304)
T 3o1i_D           88 TPVFATVNQ   96 (304)
T ss_dssp             SCEEECSSC
T ss_pred             CCEEEecCC
Confidence            999999653

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=86.77  E-value=7.1  Score=30.34  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCC--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYC--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      .=..++++-+.+++   +..++.....  .+.+...+..+.+.+.++|++++.+.....    -+   ..++.+. ..++
T Consensus        16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~----~~---~~~~~~~-~~gi   87 (297)
T 3rot_A           16 PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA----FS---KSLQRAN-KLNI   87 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST----TH---HHHHHHH-HHTC
T ss_pred             chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH----HH---HHHHHHH-HCCC
Confidence            33445555555555   7777665544  478888899999999999999987653211    12   2334433 3589


Q ss_pred             CEEEEeCCC
Q psy9711          85 PVIIYNNTF   93 (198)
Q Consensus        85 pi~lYn~P~   93 (198)
                      |++.+|.+.
T Consensus        88 PvV~~~~~~   96 (297)
T 3rot_A           88 PVIAVDTRP   96 (297)
T ss_dssp             CEEEESCCC
T ss_pred             CEEEEcCCC
Confidence            999998754

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=86.69  E-value=1.3  Score=34.55  Aligned_cols=57  Identities=25%  Similarity=0.235  Sum_probs=32.3

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      ++++.+.+..++||+++-|-.+.+++.++.    ++|||++++..-.+..+. +.+++.++.
T Consensus       190 ~~i~~l~~~~~ipvia~GGI~~~ed~~~~~----~~Gadgv~vgsal~~~~~-~~~~~~~~l  246 (266)
T 2w6r_A          190 EMIRFVRPLTTLPIIASGGAGKMEHFLEAF----LAGADAALAASVFHFREI-DMRELKEYL  246 (266)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSHHHHHHHH----HHTCSEEEESTTTC--------------
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCHHHHHHHH----HcCCHHHHccHHHHcCCC-CHHHHHHHH
Confidence            455555554589999987766667666654    369999999988876652 245554443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=86.69  E-value=5  Score=35.93  Aligned_cols=110  Identities=9%  Similarity=0.101  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHHHh----c--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcC---------CCCcCCC
Q psy9711           8 TEEEKLKIISTLRQE----T--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILC---------PYYFQKK   65 (198)
Q Consensus         8 t~~Er~~l~~~~~~~----~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~---------P~y~~~~   65 (198)
                      |.+-|.+++..++++    +  +.||.+=++       +.+.++++++++.+++ |+|.+-+..         |.+..+ 
T Consensus       202 s~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~-  279 (690)
T 3k30_A          202 SLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPE-  279 (690)
T ss_dssp             SHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCT-
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCc-
Confidence            456666555544444    4  567777553       3347899999999998 899887753         223222 


Q ss_pred             CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711          66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        66 ~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~  128 (198)
                         ....++.+.|-+.+++||+.      .|.--+++...++.+..  ..+++=-.   |+....++.
T Consensus       280 ---~~~~~~~~~i~~~~~~pvi~------~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~  338 (690)
T 3k30_A          280 ---GRQEEFVAGLKKLTTKPVVG------VGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIR  338 (690)
T ss_dssp             ---TTTHHHHTTSGGGCSSCEEE------CSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             ---cccHHHHHHHHHHcCCeEEE------eCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHH
Confidence               11234556666777999886      34445688887777543  45555443   666665554

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=86.66  E-value=8.9  Score=29.20  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHH-----------------------HHHHHhcCCCEEEEcCCCCcC
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDL-----------------------TQKAAKAGANAALILCPYYFQ   63 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~-----------------------a~~a~~~Gad~v~~~~P~y~~   63 (198)
                      +|-.++++.+.+..   ++.++..-+...+....+.                       +..+.++|||++++.  ...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~--~ser   93 (219)
T 2h6r_A           16 NRGLEIAKIAEKVSEESGITIGVAPQFVDLRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLIN--HSEK   93 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEECCTTTHHHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEES--BTTB
T ss_pred             HHHHHHHHHHHhcccccCCcEEEECCHHHHHHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEEC--Cccc
Confidence            56666666554322   4566555555555444331                       677889999999993  2211


Q ss_pred             CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE------------eeC--C-HHHHHHH
Q psy9711          64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV------------KDT--D-NIKLANM  127 (198)
Q Consensus        64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi------------K~s--d-~~~~~~~  127 (198)
                      . ...+++.++++.. ...++.+++-=.|.        +...++.+. +.++|+            |..  | .....+.
T Consensus        94 ~-l~~~e~~~~~~~a-~~~Gl~~iv~v~~~--------~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~  163 (219)
T 2h6r_A           94 R-MLLADIEAVINKC-KNLGLETIVCTNNI--------NTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRA  163 (219)
T ss_dssp             C-CBHHHHHHHHHHH-HHHTCEEEEEESSS--------HHHHHHTTTCCSEEEECCCC--------------CSHHHHHH
T ss_pred             c-CCHHHHHHHHHHH-HHCCCeEEEEeCCc--------hHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHH
Confidence            1 1155666655554 44577555543332        123444433 345554            222  2 4455555


Q ss_pred             HhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711         128 ANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVLGGPICELYDLA  176 (198)
Q Consensus       128 ~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~  176 (198)
                      +++. .++..+..|..    .........|+||++.|.+.+-++-..++.+.+
T Consensus       164 ir~~-~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l  215 (219)
T 2h6r_A          164 VKEI-NKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIREL  215 (219)
T ss_dssp             HHHH-CTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHH
T ss_pred             HHhc-cCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHH
Confidence            5433 33566665543    233335678999999998766554444444433

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=86.61  E-value=1.8  Score=33.48  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .++++.+.+..++||+++-|-.+.++..++.    +.|+|++++..-.+..+- +.++..++.+
T Consensus       185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~----~~Gadgv~vgsal~~~~~-~~~~~~~~l~  243 (252)
T 1ka9_F          185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAF----QAGAEAALAASVFHFGEI-PIPKLKRYLA  243 (252)
T ss_dssp             HHHHHHHHHHCSSCEEEESCCCSHHHHHHHH----HTTCSEEEESHHHHTTSS-CHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH----HCCCHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence            4556666665589999976655555554433    579999999987776651 3777777643

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=86.57  E-value=7.5  Score=29.53  Aligned_cols=77  Identities=12%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..=..++++-+.+++   +..++......+.+...+..+...+.++|++++.+.....    .    ..++.+ ...++
T Consensus        13 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~----~~~~~~-~~~~i   83 (272)
T 3o74_A           13 ENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE----D----DSYREL-QDKGL   83 (272)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS----C----CHHHHH-HHTTC
T ss_pred             cChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc----H----HHHHHH-HHcCC
Confidence            3334455666655555   7777766666678888888999999999999987654211    1    123333 34699


Q ss_pred             CEEEEeCCC
Q psy9711          85 PVIIYNNTF   93 (198)
Q Consensus        85 pi~lYn~P~   93 (198)
                      |+++.+.+.
T Consensus        84 PvV~~~~~~   92 (272)
T 3o74_A           84 PVIAIDRRL   92 (272)
T ss_dssp             CEEEESSCC
T ss_pred             CEEEEccCC
Confidence            999998753

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=86.55  E-value=2.1  Score=33.08  Aligned_cols=135  Identities=16%  Similarity=0.067  Sum_probs=76.1

Q ss_pred             HHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          14 KIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        14 ~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      .+++.+.+..  ++|+-++.--++..+   .++.+.++|+|.+.+..   ..    .+.+.+..+.+- ..++.+.+==+
T Consensus        52 ~~v~~ir~~~~~~~~~dvhLmv~~p~~---~i~~~~~aGad~itvH~---Ea----~~~~~~~i~~i~-~~G~k~gval~  120 (228)
T 3ovp_A           52 PVVESLRKQLGQDPFFDMHMMVSKPEQ---WVKPMAVAGANQYTFHL---EA----TENPGALIKDIR-ENGMKVGLAIK  120 (228)
T ss_dssp             HHHHHHHHHHCSSSCEEEEEECSCGGG---GHHHHHHHTCSEEEEEG---GG----CSCHHHHHHHHH-HTTCEEEEEEC
T ss_pred             HHHHHHHHhhCCCCcEEEEEEeCCHHH---HHHHHHHcCCCEEEEcc---CC----chhHHHHHHHHH-HcCCCEEEEEc
Confidence            3556666652  677777655455554   45667789999998852   11    123444555553 34665666555


Q ss_pred             CCCcccccCHHHHHHHHc----------CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecCh-hhHHHHhhcCCCeEE
Q psy9711          92 TFVTNIDISVDTLVKLAH----------HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGGI  158 (198)
Q Consensus        92 P~~tg~~l~~~~l~~L~~----------~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d-~~~~~~l~~G~~G~i  158 (198)
                      |. |    +.+.+..+.+          .|.+-|-|..  .+.+++++.+...+-.+.|=.|-. +.......+|+++++
T Consensus       121 p~-t----~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~V  195 (228)
T 3ovp_A          121 PG-T----SVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIV  195 (228)
T ss_dssp             TT-S----CGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEE
T ss_pred             CC-C----CHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEE
Confidence            64 2    2334444442          3455555554  456666655321122344445544 356677889999999


Q ss_pred             eccccc
Q psy9711         159 NALSAV  164 (198)
Q Consensus       159 s~~~n~  164 (198)
                      .|.+-+
T Consensus       196 vGsaIf  201 (228)
T 3ovp_A          196 SGSAIM  201 (228)
T ss_dssp             ESHHHH
T ss_pred             EeHHHh
Confidence            996533

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=86.49  E-value=9  Score=29.44  Aligned_cols=75  Identities=7%  Similarity=0.053  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .++++-+.+++   +..++......+.+...+..+.+.+.++|++++.+.....++ ...   +.++.+. ..++|+++.
T Consensus        31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-~~~---~~~~~~~-~~~iPvV~~  105 (298)
T 3tb6_A           31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQT-PNI---GYYLNLE-KNGIPFAMI  105 (298)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC-TTH---HHHHHHH-HTTCCEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccC-CcH---HHHHHHH-hcCCCEEEE
Confidence            34455444444   777777666677888888899999999999999875432111 022   3444443 469999999


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      +.+
T Consensus       106 ~~~  108 (298)
T 3tb6_A          106 NAS  108 (298)
T ss_dssp             SSC
T ss_pred             ecC
Confidence            864

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=86.47  E-value=7.9  Score=30.98  Aligned_cols=38  Identities=11%  Similarity=0.073  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEE
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAAL   55 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~   55 (198)
                      +.++.+.+..++|++++.....    .+.++.+.++|||++.
T Consensus        68 ~~i~~I~~~~~iPv~~k~r~g~----~~~~~~~~a~GAd~V~  105 (305)
T 2nv1_A           68 TIVEEVMNAVSIPVMAKARIGH----IVEARVLEAMGVDYID  105 (305)
T ss_dssp             HHHHHHHHHCSSCEEEEECTTC----HHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHhCCCCEEecccccc----hHHHHHHHHCCCCEEE
Confidence            3444445545899987754322    4556677779999997

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=86.43  E-value=4.1  Score=31.78  Aligned_cols=87  Identities=10%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-eCCCCccc--ccCHH---HHH
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-NNTFVTNI--DISVD---TLV  105 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n~P~~tg~--~l~~~---~l~  105 (198)
                      .+...++..++.+.+++.|.+.+..+.|.    +  ..+..+.+...++    .++++ -.++.||.  .+++.   .+.
T Consensus       125 ~d~~~~~~~~~~~~~~~~g~~~i~~~a~~----t--~~e~~~~~~~~~~----g~v~~~s~~G~tG~~~~~~~~~~~~i~  194 (262)
T 1rd5_A          125 PDLPYVAAHSLWSEAKNNNLELVLLTTPA----I--PEDRMKEITKASE----GFVYLVSVNGVTGPRANVNPRVESLIQ  194 (262)
T ss_dssp             TTCBTTTHHHHHHHHHHTTCEECEEECTT----S--CHHHHHHHHHHCC----SCEEEECSSCCBCTTSCBCTHHHHHHH
T ss_pred             cCCChhhHHHHHHHHHHcCCceEEEECCC----C--CHHHHHHHHhcCC----CeEEEecCCCCCCCCcCCCchHHHHHH
Confidence            34455677788888888999988777764    1  3333333333222    23322 23444665  44443   556


Q ss_pred             HHHc---CCCEEEEeeCCHHHHHHHH
Q psy9711         106 KLAH---HENIRGVKDTDNIKLANMA  128 (198)
Q Consensus       106 ~L~~---~p~i~giK~sd~~~~~~~~  128 (198)
                      ++.+   +|-++|-=-++.+.+.+++
T Consensus       195 ~v~~~~~~pI~vgGGI~~~e~~~~~~  220 (262)
T 1rd5_A          195 EVKKVTNKPVAVGFGISKPEHVKQIA  220 (262)
T ss_dssp             HHHHHCSSCEEEESCCCSHHHHHHHH
T ss_pred             HHHhhcCCeEEEECCcCCHHHHHHHH
Confidence            6653   4544433332477777766

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=86.28  E-value=5.1  Score=31.38  Aligned_cols=71  Identities=14%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .++++-+.+++   +..+++.....+.+...+..+...+.++||+++.+...   +  .++   .++.+.+  ++|+++.
T Consensus        31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~---~--~~~---~~~~l~~--~iPvV~i  100 (303)
T 3kke_A           31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED---F--DDD---MLAAVLE--GVPAVTI  100 (303)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT---C--CHH---HHHHHHT--TSCEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC---C--cHH---HHHHHhC--CCCEEEE
Confidence            34444444444   67777666666777778888889999999999987642   1  221   4555555  9999999


Q ss_pred             eCCC
Q psy9711          90 NNTF   93 (198)
Q Consensus        90 n~P~   93 (198)
                      +.+.
T Consensus       101 ~~~~  104 (303)
T 3kke_A          101 NSRV  104 (303)
T ss_dssp             SCCC
T ss_pred             CCcC
Confidence            8653

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=86.26  E-value=13  Score=30.83  Aligned_cols=165  Identities=13%  Similarity=0.087  Sum_probs=90.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHH--HH--------------------HHHHHHHhcCCCEEEEcC
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIA-GTYCESTRA--TI--------------------DLTQKAAKAGANAALILC   58 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~--~i--------------------~~a~~a~~~Gad~v~~~~   58 (198)
                      ++...||.+|+.++++...+. ++..|= |....+..+  .+                    +-++.|.++|++.+-+.-
T Consensus        17 ~~~~~~~~~~k~~ia~~L~~~-Gv~~IE~g~p~~~~~~~~~~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~v~i~~   95 (382)
T 2ztj_A           17 FEKANFSTQDKVEIAKALDEF-GIEYIEVTTPVASPQSRKDAEVLASLGLKAKVVTHIQCRLDAAKVAVETGVQGIDLLF   95 (382)
T ss_dssp             STTCCCCHHHHHHHHHHHHHH-TCSEEEECCTTSCHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCCCcCHHHHHHHHHHHHHc-CcCEEEEcCCcCCHHHHHHHHHHHhcCCCcEEEEEcccChhhHHHHHHcCCCEEEEEe
Confidence            456789999999999998776 554432 322222211  11                    225667788999877654


Q ss_pred             CCC---cC-CCCCHHHHHHHHHHHHccC---C--CCEEEEeCCCCcccccCHHHHHHHH----cCCCEEEEeeC----CH
Q psy9711          59 PYY---FQ-KKMTEDLIYEHFISVADNS---P--IPVIIYNNTFVTNIDISVDTLVKLA----HHENIRGVKDT----DN  121 (198)
Q Consensus        59 P~y---~~-~~~~~~~i~~y~~~i~~~~---~--~pi~lYn~P~~tg~~l~~~~l~~L~----~~p~i~giK~s----d~  121 (198)
                      +..   .. ...|.++.++-+++..+..   +  +.+.++=.   .....+++.+.+++    +....+.+||+    .+
T Consensus        96 ~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~e---d~~~~~~~~~~~~~~~~~~~a~~i~l~DT~G~~~P  172 (382)
T 2ztj_A           96 GTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAE---DTFRSEEQDLLAVYEAVAPYVDRVGLADTVGVATP  172 (382)
T ss_dssp             CC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEET---TTTTSCHHHHHHHHHHHGGGCSEEEEEETTSCCCH
T ss_pred             ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEE---eCCCCCHHHHHHHHHHHHHhcCEEEecCCCCCCCH
Confidence            432   11 2234677666666665533   4  54444422   23344555555444    34789999999    66


Q ss_pred             HHHHHHHh---hc--CCCCeEEEecChh-----hHHHHhhcCCC---eEEeccc----ccchHHHH
Q psy9711         122 IKLANMAN---QT--KDLNFSVFAGSAG-----YLLSGLLVGCA---GGINALS----AVLGGPIC  170 (198)
Q Consensus       122 ~~~~~~~~---~~--~~~~~~v~~G~d~-----~~~~~l~~G~~---G~is~~~----n~~P~~~~  170 (198)
                      ..+.++++   +.  .+-.+.+=+=+|.     ..+.++.+|++   +.++|++    |..-+.++
T Consensus       173 ~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv  238 (382)
T 2ztj_A          173 RQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFL  238 (382)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence            66555442   22  2223444332221     34567888975   4455444    55555554

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=86.25  E-value=2.6  Score=34.08  Aligned_cols=157  Identities=12%  Similarity=0.037  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--------CCCCCHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYF--------QKKMTEDLIYE   73 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--------~~~~~~~~i~~   73 (198)
                      -.+|.+|....++.+.+.++.||++-.   .+.+..++.+.++...++|++++-+---...        +.=.++++..+
T Consensus        59 ~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~  138 (295)
T 1xg4_A           59 GISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVD  138 (295)
T ss_dssp             SCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHH
Confidence            358999999999999888888999965   3347899999999999999999998643211        10024788888


Q ss_pred             HHHHHHccC-CCCEEEEeCCCCcccccC---HHHHHHHHcC--CCEEEE-eeC--CHHHHHHHHhhcCCCCe-EEEe-cC
Q psy9711          74 HFISVADNS-PIPVIIYNNTFVTNIDIS---VDTLVKLAHH--ENIRGV-KDT--DNIKLANMANQTKDLNF-SVFA-GS  142 (198)
Q Consensus        74 y~~~i~~~~-~~pi~lYn~P~~tg~~l~---~~~l~~L~~~--p~i~gi-K~s--d~~~~~~~~~~~~~~~~-~v~~-G~  142 (198)
                      -.+...++. +-++++-=   ||.....   .+.+.|....  -..-+| =++  +.+.+.++.+...-|-+ .+.. |.
T Consensus       139 ~I~Aa~~a~~~~~~~i~a---Rtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~iP~~~N~~~~g~  215 (295)
T 1xg4_A          139 RIRAAVDAKTDPDFVIMA---RTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGA  215 (295)
T ss_dssp             HHHHHHHHCSSTTSEEEE---EECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCSCBEEECCSSSS
T ss_pred             HHHHHHHhccCCCcEEEE---ecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence            888888776 45555532   3432211   2455554421  122222 222  55555555533322322 2222 22


Q ss_pred             h-h-hHHHHhhcCCCeEEeccccc
Q psy9711         143 A-G-YLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       143 d-~-~~~~~l~~G~~G~is~~~n~  164 (198)
                      . . ..-..-.+|++.++-+.+.+
T Consensus       216 ~p~~~~~eL~~~G~~~v~~~~~~~  239 (295)
T 1xg4_A          216 TPLFTTDELRSAHVAMALYPLSAF  239 (295)
T ss_dssp             SCCCCHHHHHHTTCSEEEESSHHH
T ss_pred             CCCCCHHHHHHcCCCEEEEChHHH
Confidence            1 1 23344568999888777644

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=86.23  E-value=1.9  Score=33.33  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV  116 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi  116 (198)
                      .+.++.++.+++.|++.+.+....-....  ...-.+..+.+++.+++|+++      .|.--+++.+.++.+.. .-++
T Consensus        35 ~~~~~~a~~~~~~G~~~i~v~d~~~~~~~--~~~~~~~i~~i~~~~~ipvi~------~Ggi~~~~~~~~~l~~G-ad~V  105 (247)
T 3tdn_A           35 ILLRDWVVEVEKRGAGEILLTSIDRDGTK--SGYDTEMIRFVRPLTTLPIIA------SGGAGKMEHFLEAFLRG-ADKV  105 (247)
T ss_dssp             EEHHHHHHHHHHTTCSEEEEEETTTTTCS--SCCCHHHHHHHGGGCCSCEEE------ESCCCSHHHHHHHHHTT-CSEE
T ss_pred             CCHHHHHHHHHHcCCCEEEEEecCcccCC--CcccHHHHHHHHHhCCCCEEE------eCCCCCHHHHHHHHHcC-CCee
Confidence            46789999999999999988743211100  111246778999999999987      33344778888877543 4444


Q ss_pred             eeC-----CHHHHHHHH
Q psy9711         117 KDT-----DNIKLANMA  128 (198)
Q Consensus       117 K~s-----d~~~~~~~~  128 (198)
                      =..     |+..+.++.
T Consensus       106 ~ig~~~l~dp~~~~~~~  122 (247)
T 3tdn_A          106 SINTAAVENPSLITQIA  122 (247)
T ss_dssp             CCSHHHHHCTHHHHHHH
T ss_pred             ehhhHHhhChHHHHHHH
Confidence            433     444444444

>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A

Probab=86.15  E-value=1.5  Score=37.41  Aligned_cols=170  Identities=14%  Similarity=0.074  Sum_probs=97.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ....+..+||......+++.+     + +--.+.+++. .++.+++++.++++|+.++|+-+ .....+ .-..+.++.+
T Consensus       193 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiTa~-~~em~~Ra~~a~e~G~~~~mvd~-~~~G~~-a~~~l~~~~r  269 (430)
T 2d69_A          193 SFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGP-VNIMEKRAEMVANEGGQYVMIDI-VVAGWS-ALQYMREVTE  269 (430)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCSS-HHHHHHHHHHHHHHTCCEEEEEH-HHHCHH-HHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhhCCccEEEeecCCC-HHHHHHHHHHHHHcCCCeEEEEe-eccChH-HHHHHHHHhh
Confidence            345667789987555554444     3 3445688876 99999999999999999999863 222221 1333444443


Q ss_pred             HHHccCCCCEEEEeCCC-----CcccccCHHHHHH---HH--c---CCCEEEEeeC-CHHHHHH---HHhh---cCCCCe
Q psy9711          77 SVADNSPIPVIIYNNTF-----VTNIDISVDTLVK---LA--H---HENIRGVKDT-DNIKLAN---MANQ---TKDLNF  136 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~-----~tg~~l~~~~l~~---L~--~---~p~i~giK~s-d~~~~~~---~~~~---~~~~~~  136 (198)
                      +    .++|+..+-.-.     .....++..++.+   |+  +   .|+++| |.. +......   ...+   ...+-+
T Consensus       270 ~----~~l~lh~HrA~hga~~r~~~~Gi~~~Vl~Kl~RLaGaD~ih~gt~~G-Kleg~~~~~~~~~~~~~q~w~~~k~~~  344 (430)
T 2d69_A          270 D----LGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVG-KMAGNYEEIKRINDFLLSKWEHIRPVF  344 (430)
T ss_dssp             H----HTCEEEEECTTTHHHHSCTTSEECHHHHHHHHHHHTCSEEECCCCCS-SSCCCHHHHHHHHHHHHSCCTTCCCCE
T ss_pred             c----cCcEEEeccCCccccccCCCCCCcHHHHHHHHHHhCCCcccccCcCC-cccCCHHHHHHHHHHHhCccccCCCCe
Confidence            3    478877764310     0112355655554   44  2   266644 777 5543333   2222   124568


Q ss_pred             EEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711         137 SVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK  180 (198)
Q Consensus       137 ~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd  180 (198)
                      .|.+|.-+  .+...+ ..|-|-++...+.++  |       ..+++-++++++|.
T Consensus       345 PV~SGGi~~~~~p~l~~~~G~D~vl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~  400 (430)
T 2d69_A          345 PVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGV  400 (430)
T ss_dssp             EEEESSCCGGGHHHHHHHHCSCCEEECHHHHHTCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EeecCCcchhhHHHHHHHhCCcEEEEeCccccCCCCCcHHHHHHHHHHHHHHHcCC
Confidence            88887543  232322 357666554444332  1       46677777777775

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=86.07  E-value=2  Score=34.08  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .++++.+++..++|||++-|=.+.++    +..+.++|+|+|++..-..-..+  +..+.+.|..-.+
T Consensus       176 ~~lI~~I~e~~~vPVI~eGGI~TPsD----Aa~AmeLGAdgVlVgSAI~~a~d--P~~ma~af~~Av~  237 (265)
T 1wv2_A          176 PYNLRIILEEAKVPVLVDAGVGTASD----AAIAMELGCEAVLMNTAIAHAKD--PVMMAEAMKHAIV  237 (265)
T ss_dssp             HHHHHHHHHHCSSCBEEESCCCSHHH----HHHHHHHTCSEEEESHHHHTSSS--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEeCCCCCHHH----HHHHHHcCCCEEEEChHHhCCCC--HHHHHHHHHHHHH
Confidence            46778888756999999666545544    45677889999999887764444  8888887776443

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=86.05  E-value=11  Score=29.60  Aligned_cols=144  Identities=13%  Similarity=0.063  Sum_probs=79.0

Q ss_pred             CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEc--CCCC-c-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711          24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALIL--CPYY-F-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID   98 (198)
Q Consensus        24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~--~P~y-~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~   98 (198)
                      +.+++.+... .+.+++++.++.++++|.+.++.+  .|-. . .+.  .+++.+..++... -++.++.+..|.     
T Consensus        65 ~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e--~~~~~~~a~~~~~-~g~~vi~~~~~~-----  136 (264)
T 1xm3_A           65 KYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPD--PVETLKASEQLLE-EGFIVLPYTSDD-----  136 (264)
T ss_dssp             GSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBC--HHHHHHHHHHHHH-TTCCEEEEECSC-----
T ss_pred             CCeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccc--hHHHHHHHHHHHC-CCeEEEEEcCCC-----
Confidence            6777777654 778899999999999866555321  2211 1 111  4455555444321 267777666552     


Q ss_pred             cCHHHHHHHHcC--CCEE------EEeeC--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccc-
Q psy9711          99 ISVDTLVKLAHH--ENIR------GVKDT--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVL-  165 (198)
Q Consensus        99 l~~~~l~~L~~~--p~i~------giK~s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~-  165 (198)
                        ++...++.+.  .-|+      |....  +...+.++. +..+-.+.+-.|-.  +.....+..|++|++.+.+.+- 
T Consensus       137 --~~~a~~~~~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~-~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a  213 (264)
T 1xm3_A          137 --VVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFII-EQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA  213 (264)
T ss_dssp             --HHHHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHH-HHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred             --HHHHHHHHHhCCCEEEECCcccCCCCCCCCHHHHHHHH-hcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence              3455555532  2221      22222  444455444 33333344444553  4566778999999998886441 


Q ss_pred             --h-HHHHHHHHHHHc
Q psy9711         166 --G-GPICELYDLAKA  178 (198)
Q Consensus       166 --P-~~~~~l~~~~~~  178 (198)
                        | +...++.+++++
T Consensus       214 ~dp~~~~~~l~~~v~~  229 (264)
T 1xm3_A          214 DDPVKMARAMKLAVEA  229 (264)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence              3 344555555544

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=86.04  E-value=8.7  Score=28.49  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE---
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV---   86 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi---   86 (198)
                      .++++.+.+..   .+|++.+.+.      .+....+.+.|++.++.-|..+.     .+++.+..........+-+   
T Consensus        41 ~~~~~~l~~~~~~~~i~vi~~~~~------~~~~~~~~~~Ga~~~l~kp~~~~-----~~~l~~~i~~~~~~~~~~~~~d  109 (237)
T 3cwo_X           41 IDAIKEIMKIDPNAKIIVCSAMGQ------QAMVIEAIKAGAKDFIVNTAAVE-----NPSLITQIAQTFGSQAVVVAID  109 (237)
T ss_dssp             HHHHHHHHHHSSSCCEEEECCSST------HHHHHHHHHTTCCEEEESHHHHH-----CTHHHHHHHHHHTGGGEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCC------HHHHHHHHHCCHHheEeCCcccC-----hHHHHHHHHHHhCCCceEEEee
Confidence            45666665554   4566654443      45667788899999886531111     2333333333332211111   


Q ss_pred             --------EEEeCCCCcccccCH-HHHHHHHc--CCCE--EEEeeC------CHHHHHHHHhhcCCCCeEEEecCh--hh
Q psy9711          87 --------IIYNNTFVTNIDISV-DTLVKLAH--HENI--RGVKDT------DNIKLANMANQTKDLNFSVFAGSA--GY  145 (198)
Q Consensus        87 --------~lYn~P~~tg~~l~~-~~l~~L~~--~p~i--~giK~s------d~~~~~~~~~~~~~~~~~v~~G~d--~~  145 (198)
                              .++..-+.+-...++ +.+.++..  .+.|  .++..+      +...+.++. ....-.|...+|..  +.
T Consensus       110 ~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~-~~~~~Pvia~~g~~~~~~  188 (237)
T 3cwo_X          110 AKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR-PLTTLPIIASGGAGKMEH  188 (237)
T ss_dssp             EEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHG-GGCCSCEEEESCCCSHHH
T ss_pred             ecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHH-HhcCCCEEecCCCCCHHH
Confidence                    111111111111233 45566663  3434  343222      334455544 23344555555544  35


Q ss_pred             HHHHhhcCCCeEEecccc-cchHHHHHHHHHHHcC
Q psy9711         146 LLSGLLVGCAGGINALSA-VLGGPICELYDLAKAG  179 (198)
Q Consensus       146 ~~~~l~~G~~G~is~~~n-~~P~~~~~l~~~~~~g  179 (198)
                      +...+..|++|++.|.+- .-|..+.++.+.++++
T Consensus       189 ~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~~~  223 (237)
T 3cwo_X          189 FLEAFLAGADAALAASVFHFREIDVRELKEYLKKH  223 (237)
T ss_dssp             HHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHHHC
Confidence            677788999999988764 2333444555555443

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=85.97  E-value=2  Score=35.07  Aligned_cols=73  Identities=18%  Similarity=0.086  Sum_probs=45.8

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT  103 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~  103 (198)
                      +++|+.++.+      .+.++.+.+.|+|++.+..+-+...+ .+..-.+...++.+.+++||+.     ..|. -+++.
T Consensus       124 g~~v~~~v~s------~~~a~~a~~~GaD~i~v~g~~~GG~~-G~~~~~~ll~~i~~~~~iPvia-----aGGI-~~~~d  190 (326)
T 3bo9_A          124 GTKVIPVVAS------DSLARMVERAGADAVIAEGMESGGHI-GEVTTFVLVNKVSRSVNIPVIA-----AGGI-ADGRG  190 (326)
T ss_dssp             TCEEEEEESS------HHHHHHHHHTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHHHCSSCEEE-----ESSC-CSHHH
T ss_pred             CCcEEEEcCC------HHHHHHHHHcCCCEEEEECCCCCccC-CCccHHHHHHHHHHHcCCCEEE-----ECCC-CCHHH
Confidence            6777776642      34566788999999999876543221 0112346667777778899887     2332 24666


Q ss_pred             HHHHHc
Q psy9711         104 LVKLAH  109 (198)
Q Consensus       104 l~~L~~  109 (198)
                      +.+..+
T Consensus       191 v~~al~  196 (326)
T 3bo9_A          191 MAAAFA  196 (326)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=85.96  E-value=7.9  Score=30.03  Aligned_cols=73  Identities=11%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhc---CC-eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          12 KLKIISTLRQET---KK-TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        12 r~~l~~~~~~~~---~~-pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ..++++-+.+++   +. .++......+.....+..+.+.+.++|++++.+...       +.....++.+. ..++|++
T Consensus        17 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-------~~~~~~~~~~~-~~~iPvV   88 (309)
T 2fvy_A           17 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-------AAAGTVIEKAR-GQNVPVV   88 (309)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-------GGHHHHHHHHH-TTTCCEE
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-------chhHHHHHHHH-HCCCcEE
Confidence            445555555555   65 676655556777778888888889999999976431       11123344443 4689999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      ++|.+
T Consensus        89 ~~~~~   93 (309)
T 2fvy_A           89 FFNKE   93 (309)
T ss_dssp             EESSC
T ss_pred             EecCC
Confidence            99975

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=85.95  E-value=2.7  Score=34.90  Aligned_cols=104  Identities=13%  Similarity=0.149  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.  .+    ++ .+.++.|.+++++|
T Consensus       174 ~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~----~d-~~~~~~l~~~~~ip  244 (377)
T 3my9_A          174 HAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFI--EQPV--PR----RH-LDAMAGFAAALDTP  244 (377)
T ss_dssp             HHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCE--ECCS--CT----TC-HHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEE--ECCC--Cc----cC-HHHHHHHHHhCCCC
Confidence            455567778888776  78888754 45568899999999999887654  3443  12    11 46677888889999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |+.=.      .-.++..+.++.+  .-.++-+|-+   .+....++
T Consensus       245 Ia~dE------~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i  285 (377)
T 3my9_A          245 ILADE------SCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSL  285 (377)
T ss_dssp             EEEST------TCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHH
T ss_pred             EEECC------ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHH
Confidence            98732      3456778888873  4688899887   45544443

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=85.94  E-value=6.8  Score=32.58  Aligned_cols=97  Identities=9%  Similarity=-0.041  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+  --|.  ++    ++ .+.++.|.+++++
T Consensus       195 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i--EeP~--~~----~d-~~~~~~l~~~~~i  265 (383)
T 3toy_A          195 DLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWI--EEPV--PQ----EN-LSGHAAVRERSEI  265 (383)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS--CT----TC-HHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Cc----ch-HHHHHHHHhhcCC
Confidence            3556677788888876  78888754 55678999999999999887643  3443  11    11 3456788888999


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ||+.=.      .-.++..+.++.+  .-.++-+|-+
T Consensus       266 PIa~dE------~~~~~~~~~~~i~~~a~d~v~ik~~  296 (383)
T 3toy_A          266 PIQAGE------NWWFPRGFAEAIAAGASDFIMPDLM  296 (383)
T ss_dssp             CEEECT------TCCHHHHHHHHHHHTCCSEECCCTT
T ss_pred             CEEeCC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence            998733      2345677888873  4688889987

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=85.93  E-value=1.3  Score=36.34  Aligned_cols=79  Identities=13%  Similarity=-0.050  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      |.+|-.+.++.+++.+   +..|..|.   +..+.+..++.++.+.++|++.+.+. -.....  +|.++.+.++.+.+.
T Consensus       116 s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~--~P~~v~~lv~~l~~~  192 (325)
T 3eeg_A          116 TRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNIP-DTTGYM--LPWQYGERIKYLMDN  192 (325)
T ss_dssp             CCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEECC-BSSSCC--CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEec-CccCCc--CHHHHHHHHHHHHHh
Confidence            3444444444444444   55666554   34567778888888888888865543 333333  388888888888887


Q ss_pred             CC----CCEEEE
Q psy9711          82 SP----IPVIIY   89 (198)
Q Consensus        82 ~~----~pi~lY   89 (198)
                      .+    +||-++
T Consensus       193 ~~~~~~~~i~~H  204 (325)
T 3eeg_A          193 VSNIDKAILSAH  204 (325)
T ss_dssp             CSCGGGSEEEEC
T ss_pred             CCCCCceEEEEE
Confidence            75    677665

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=85.79  E-value=0.46  Score=38.54  Aligned_cols=58  Identities=19%  Similarity=0.091  Sum_probs=39.2

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-----CCCCcCC-CCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-----CPYYFQK-KMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-----~P~y~~~-~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      +.-|+.-+...      ++++.+++.||++++++     .+.|+.- .  ...-.++.++|.+++++||+..
T Consensus        21 kggv~~d~~~~------e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~--R~~~~~~i~~i~~~v~iPvl~k   84 (297)
T 4adt_A           21 KGGVIMDVKNV------EQAKIAEKAGAIGVMILENIPSELRNTDGVA--RSVDPLKIEEIRKCISINVLAK   84 (297)
T ss_dssp             TTCEEEEESSH------HHHHHHHHHTCSEEEECCCCC-----CCCCC--CCCCHHHHHHHHTTCCSEEEEE
T ss_pred             cCCcccCCCcH------HHHHHHHHcCCCEEEEecCCCCcchhcCCcc--cCCCHHHHHHHHHhcCCCEEEe
Confidence            55666666542      77899999999999999     3445542 1  1123467788888889999854

>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*

Probab=85.79  E-value=3.2  Score=35.50  Aligned_cols=172  Identities=15%  Similarity=0.092  Sum_probs=101.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +....+..+||......+++.+      ++--.+.+++. .++.+++++.++++|++.+|+-. +...++ --..+.+++
T Consensus       195 ~~qpf~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa~-~~eM~~Ra~~a~e~G~~~~mvd~-~~~G~~-a~~~l~~~~  271 (444)
T 3kdn_A          195 TSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITAD-LLEMEQRLEVLADLGLKHAMVDV-VITGWG-ALRYIRDLA  271 (444)
T ss_dssp             CSCTTSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEH-HHHCHH-HHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEeecCCC-HHHHHHHHHHHHHcCCCEEEEcc-ccccHH-HHHHHHHhc
Confidence            3455677899988776666665      34446789886 99999999999999999988753 322322 023333333


Q ss_pred             HHHHccCCCCEEEEeCC-------CCcccccCHHHHHHHHc--------CCCE-EEEeeC-CHHH---HHHHHhh-----
Q psy9711          76 ISVADNSPIPVIIYNNT-------FVTNIDISVDTLVKLAH--------HENI-RGVKDT-DNIK---LANMANQ-----  130 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P-------~~tg~~l~~~~l~~L~~--------~p~i-~giK~s-d~~~---~~~~~~~-----  130 (198)
                      +    ..++||..+-.-       ...|  ++.-++.+|.+        .+++ +| |.+ +...   +.+.++.     
T Consensus       272 ~----~~~l~lh~HrA~~ga~~r~~~hG--i~~~vl~Kl~RLaG~D~ih~gt~g~G-Kleg~~~~~~~~~~~lr~~~~~~  344 (444)
T 3kdn_A          272 A----DYGLAIHGHRAMHAAFTRNPYHG--ISMFVLAKLYRLIGIDQLHVGTAGAG-KLEGERDITIQNARILRESHYKP  344 (444)
T ss_dssp             H----HHTCEEEEECTTTHHHHSCTTSE--ECHHHHHHHHHHHTCSEEECCCTTSS-SBCCCHHHHHHHHHHHHCSEECC
T ss_pred             c----ccCeEEEEccCcccccccCCCCC--cCHHHHHHHHHHcCCCeeeccccccC-CcCCCHHHHHHHHHHHHhccccc
Confidence            3    357888777431       1123  45555554442        2555 45 666 4433   3444421     


Q ss_pred             -------------cCCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC-HHH
Q psy9711         131 -------------TKDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK-WEE  183 (198)
Q Consensus       131 -------------~~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd-~~~  183 (198)
                                   ...+-+.|.+|.-+  .+...+ ..|-|-++...+.++  |       ..+++-++++.+|. .++
T Consensus       345 d~~~g~~~~q~w~~~~~~~PV~SGGih~~~~p~l~~~~G~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~~l~e  423 (444)
T 3kdn_A          345 DENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDE  423 (444)
T ss_dssp             CTTCCSCCCEECTTCCCCEEEEESSCCTTSSHHHHHHHCSSSEEECSHHHHTCTTCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             ccccCccccCcccCCCCceeccCCCCCHhHHHHHHHHhCCcEEEEcCCcccCCCCChhHHHHHHHHHHHHHHcCCCHHH
Confidence                         12355788887553  222222 467666654444432  2       56677788888874 443

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=85.74  E-value=6.6  Score=30.34  Aligned_cols=76  Identities=7%  Similarity=0.054  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..-..++++-+.+++   +..+++.....+.+...+..+...+.++|++++.+...   .  .    ..++.+ ...++
T Consensus        19 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~--~----~~~~~~-~~~~i   88 (291)
T 3egc_A           19 ENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG---E--H----DYLRTE-LPKTF   88 (291)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS---C--C----HHHHHS-SCTTS
T ss_pred             cchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC---C--h----HHHHHh-hccCC
Confidence            3334455666665555   77777766666788888888999999999999987654   2  2    233333 45689


Q ss_pred             CEEEEeCCC
Q psy9711          85 PVIIYNNTF   93 (198)
Q Consensus        85 pi~lYn~P~   93 (198)
                      |+++.+.+.
T Consensus        89 PvV~~~~~~   97 (291)
T 3egc_A           89 PIVAVNREL   97 (291)
T ss_dssp             CEEEESSCC
T ss_pred             CEEEEeccc
Confidence            999998754

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=85.71  E-value=4.8  Score=33.19  Aligned_cols=94  Identities=10%  Similarity=-0.013  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      +-.+.++.+++..  ++++++=+ ++-+.++++++++..++.|++.+  --|.  .    +++ .+.++.|.+++++||+
T Consensus       170 ~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~----~~d-~~~~~~l~~~~~iPIa  240 (367)
T 3dg3_A          170 LDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFA--EELC--P----ADD-VLSRRRLVGQLDMPFI  240 (367)
T ss_dssp             HHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCE--ESCS--C----TTS-HHHHHHHHHHCSSCEE
T ss_pred             hHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEE--ECCC--C----ccc-HHHHHHHHHhCCCCEE
Confidence            3455677777776  78887754 45578999999999999887643  3443  1    111 3567888888999998


Q ss_pred             EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      .=.      .-.+++.+.++.+  .-.++-+|-+
T Consensus       241 ~dE------~~~~~~~~~~~i~~~~~d~v~~k~~  268 (367)
T 3dg3_A          241 ADE------SVPTPADVTREVLGGSATAISIKTA  268 (367)
T ss_dssp             ECT------TCSSHHHHHHHHHHTSCSEEEECHH
T ss_pred             ecC------CcCCHHHHHHHHHcCCCCEEEeehh
Confidence            733      3456788888763  4688999887

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=85.56  E-value=5.5  Score=30.58  Aligned_cols=82  Identities=9%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC----HHHHHHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMT----EDLIYEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~----~~~i~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      +...+.++.|+++|+..+.+.++.... ..+    -+.+.+.++.+++.   .++.+.+-|.+......-+++.+.+|.+
T Consensus        84 ~~~~~~i~~a~~lG~~~v~~~~g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~  162 (278)
T 1i60_A           84 TEFKGMMETCKTLGVKYVVAVPLVTEQ-KIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVN  162 (278)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCBCSS-CCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHHHHH
Confidence            445667788889999999886544321 112    23455666666544   4799999998753213346777878773


Q ss_pred             ---CCCEEEEeeC
Q psy9711         110 ---HENIRGVKDT  119 (198)
Q Consensus       110 ---~p~i~giK~s  119 (198)
                         .||+--.=|.
T Consensus       163 ~~~~~~~g~~~D~  175 (278)
T 1i60_A          163 TVNRDNVGLVLDS  175 (278)
T ss_dssp             HHCCTTEEEEEEH
T ss_pred             HhCCCCeeEEEEe
Confidence               4676544444

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=85.55  E-value=1.7  Score=34.85  Aligned_cols=84  Identities=8%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcCCeEEE-eCCCCc-HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          14 KIISTLRQETKKTIIA-GTYCES-TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~-gv~~~~-~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ++++.+.+..++||++ +-|+-. .+++.+..    ++|+|+||+..-.+-.++  +....+.|....+.-         
T Consensus       188 elI~~Ike~~~IPVV~IAnGGI~TpedA~~~l----e~GaDGVmVGrAI~~s~D--P~~~Akafv~Av~~~---------  252 (291)
T 3o07_A          188 SLLKDVLEKGKLPVVNFAAGGVATPADAALLM----QLGCDGVFVGSGIFKSSN--PVRLATAVVEATTHF---------  252 (291)
T ss_dssp             HHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHH----HTTCSCEEECGGGGGSSC--HHHHHHHHHHHHHTT---------
T ss_pred             HHHHHHHHccCCCEEEecCCCCCCHHHHHHHH----HhCCCEEEEchHHhCCCC--HHHHHHHHHHHHHhc---------
Confidence            4566665555889864 445553 44443333    679999999988887777  888888888776532         


Q ss_pred             CCCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711          92 TFVTNIDISVDTLVKLAH-H-ENIRGVKDT  119 (198)
Q Consensus        92 P~~tg~~l~~~~l~~L~~-~-p~i~giK~s  119 (198)
                             -+|+.+.++++ + .-.+|+-.+
T Consensus       253 -------~~~~~~~~~s~~l~~~m~g~~~~  275 (291)
T 3o07_A          253 -------DNPSKLLEVSSDLGELMGGVSIE  275 (291)
T ss_dssp             -------TCHHHHHHHHSSCCCC-------
T ss_pred             -------cCHHHHHHHHhcccccccCcchh
Confidence                   34778888884 4 456666554

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=85.49  E-value=5.2  Score=31.09  Aligned_cols=73  Identities=14%  Similarity=0.039  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      .=..++++-+.+++   +..++..-+ .+.++..+..+.+.+.|+|++++.|..       .+.....++.+. ..++|+
T Consensus        15 ~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~-------~~~~~~~~~~~~-~~~iPv   85 (306)
T 8abp_A           15 PWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPD-------PKLGSAIVAKAR-GYDMKV   85 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSC-------GGGHHHHHHHHH-HTTCEE
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------chhhHHHHHHHH-HCCCcE
Confidence            33445555555554   666555434 478888889999999999999998653       222223344443 468999


Q ss_pred             EEEeC
Q psy9711          87 IIYNN   91 (198)
Q Consensus        87 ~lYn~   91 (198)
                      +++|.
T Consensus        86 V~~~~   90 (306)
T 8abp_A           86 IAVDD   90 (306)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            99995

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=85.48  E-value=6.4  Score=32.44  Aligned_cols=81  Identities=11%  Similarity=0.057  Sum_probs=49.0

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--CCCCCH--------HHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF--QKKMTE--------DLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--~~~~~~--------~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +++|++.+.  +    .+.++.+.+.|+|++.+..|.+.  ..+..+        ....+..+++.+.+++||+.     
T Consensus       145 g~~v~~~v~--t----~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPVia-----  213 (369)
T 3bw2_A          145 GTLTLVTAT--T----PEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA-----  213 (369)
T ss_dssp             TCEEEEEES--S----HHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEE-----
T ss_pred             CCeEEEECC--C----HHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEE-----
Confidence            456665553  2    34567888999999999766431  000000        23467778888888999886     


Q ss_pred             CcccccCHHHHHHHHcC-CCEEEE
Q psy9711          94 VTNIDISVDTLVKLAHH-ENIRGV  116 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~-p~i~gi  116 (198)
                       .|---+++.+.++.+. ...+.+
T Consensus       214 -aGGI~~~~~~~~~l~~GAd~V~v  236 (369)
T 3bw2_A          214 -AGGIMRGGQIAAVLAAGADAAQL  236 (369)
T ss_dssp             -ESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             -ECCCCCHHHHHHHHHcCCCEEEE
Confidence             3322377888777754 344443

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=85.47  E-value=15  Score=30.71  Aligned_cols=98  Identities=10%  Similarity=0.112  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      -.+.++.+++++  ++++++=+ ++-+.++++++++..++.|++.+= . |..   +  .    +.++.|.+++++||+.
T Consensus       199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-~-P~~---d--~----~~~~~l~~~~~iPIa~  267 (409)
T 3go2_A          199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVE-I-DSY---S--P----QGLAYVRNHSPHPISS  267 (409)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEE-C-CCS---C--H----HHHHHHHHTCSSCEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEE-e-CcC---C--H----HHHHHHHhhCCCCEEe
Confidence            356777887776  88888855 456789999999999999988766 2 321   2  3    3468888889999987


Q ss_pred             EeCCCCcccccCHHHHHHHHc--CCCEEEEeeC--CHHHHHH
Q psy9711          89 YNNTFVTNIDISVDTLVKLAH--HENIRGVKDT--DNIKLAN  126 (198)
Q Consensus        89 Yn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s--d~~~~~~  126 (198)
                      =.      .-.+++.+.++.+  .-.++-+|-+  -+....+
T Consensus       268 dE------~~~~~~~~~~~i~~~~~d~v~~k~~~GGit~~~~  303 (409)
T 3go2_A          268 CE------TLFGIREFKPFFDANAVDVAIVDTIWNGVWQSMK  303 (409)
T ss_dssp             CT------TCCHHHHHHHHHHTTCCSEEEECHHHHCHHHHHH
T ss_pred             CC------CcCCHHHHHHHHHhCCCCEEEeCCCCCCHHHHHH
Confidence            33      2346788888874  3578888887  4444333

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=85.47  E-value=3.3  Score=39.04  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC---------------CCCc--------CC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC---------------PYYF--------QK   64 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~---------------P~y~--------~~   64 (198)
                      +.+.-.++++.+.+..++||++=+.. +..+..+.++.++++|+|++.+..               |...        ..
T Consensus       687 ~~~~~~~iv~~v~~~~~~Pv~vK~~~-~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~  765 (1025)
T 1gte_A          687 DPELVRNICRWVRQAVQIPFFAKLTP-NVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV  765 (1025)
T ss_dssp             CHHHHHHHHHHHHHHCSSCEEEEECS-CSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred             CHHHHHHHHHHHHHhhCCceEEEeCC-ChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCC
Confidence            45556677887776668999986654 445788999999999999999942               1100        00


Q ss_pred             CCCHH---HHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711          65 KMTED---LIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        65 ~~~~~---~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      + .+.   --.++.+++.+++ ++||+.      .|---+.+...+...
T Consensus       766 s-g~~~~~~~~~~v~~v~~~~~~ipvi~------~GGI~s~~da~~~l~  807 (1025)
T 1gte_A          766 S-GTAIRPIALRAVTTIARALPGFPILA------TGGIDSAESGLQFLH  807 (1025)
T ss_dssp             E-SGGGHHHHHHHHHHHHHHSTTCCEEE------ESSCCSHHHHHHHHH
T ss_pred             C-cccchhHHHHHHHHHHHHcCCCCEEE------ecCcCCHHHHHHHHH
Confidence            0 011   1146778888888 799886      344446666666554

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=85.45  E-value=10  Score=28.83  Aligned_cols=142  Identities=13%  Similarity=0.038  Sum_probs=73.6

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEE----
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVI----   87 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~----   87 (198)
                      ++++.+.+..++|++++-+-.+.++    ++.+.++|||++++.......    ++.+.+..+.+-+..  .+.+-    
T Consensus        64 ~~i~~i~~~~~ipv~v~ggi~~~~~----~~~~l~~Gad~V~lg~~~l~~----p~~~~~~~~~~g~~~~~~ld~~~~~~  135 (244)
T 2y88_A           64 ELLAEVVGKLDVQVELSGGIRDDES----LAAALATGCARVNVGTAALEN----PQWCARVIGEHGDQVAVGLDVQIIDG  135 (244)
T ss_dssp             HHHHHHHHHCSSEEEEESSCCSHHH----HHHHHHTTCSEEEECHHHHHC----HHHHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             HHHHHHHHhcCCcEEEECCCCCHHH----HHHHHHcCCCEEEECchHhhC----hHHHHHHHHHcCCCEEEEEeccccCC
Confidence            5566666656999999866655443    666667899999987544321    444555555443222  11111    


Q ss_pred             ---EEeCCCCcccccCHHHHHHHHcC-CCEEEEee--------C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhc
Q psy9711          88 ---IYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD--------T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLV  152 (198)
Q Consensus        88 ---lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~--------s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~  152 (198)
                         ++-.-......-+.+.+.++.+. ...+.+=.        . |+..+.++. +..+-.+..-.|-.  +.+...+..
T Consensus       136 ~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~-~~~~ipvia~GGI~~~~d~~~~~~~  214 (244)
T 2y88_A          136 EHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVA-DRTDAPVIASGGVSSLDDLRAIATL  214 (244)
T ss_dssp             EEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHH-TTCSSCEEEESCCCSHHHHHHHHTT
T ss_pred             CCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHH-HhCCCCEEEECCCCCHHHHHHHHhh
Confidence               11100000011124555566554 23333311        1 666776665 32222232223333  345666777


Q ss_pred             ---CCCeEEeccccc
Q psy9711         153 ---GCAGGINALSAV  164 (198)
Q Consensus       153 ---G~~G~is~~~n~  164 (198)
                         |++|++.|.+-+
T Consensus       215 ~~~Gad~v~vG~al~  229 (244)
T 2y88_A          215 THRGVEGAIVGKALY  229 (244)
T ss_dssp             GGGTEEEEEECHHHH
T ss_pred             ccCCCCEEEEcHHHH
Confidence               999999887643

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}

Probab=85.41  E-value=7.5  Score=32.22  Aligned_cols=118  Identities=10%  Similarity=0.110  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      .++-.+.++.+++..  ++++++=+ ++-+.+++++.++..++.|+.  .+--|.  ++    ++ .+-++.+.+++++|
T Consensus       176 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~--~~----~d-~~~~~~l~~~~~ip  246 (381)
T 3fcp_A          176 LATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQPV--SA----HD-NAALVRLSQQIETA  246 (381)
T ss_dssp             HHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCS--EEECCB--CT----TC-HHHHHHHHHHSSSE
T ss_pred             hHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCcc--ceeCCC--Cc----cc-HHHHHHHHHhCCCC
Confidence            455667788888877  68888754 556789999999999998765  334553  12    11 34567788888999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      |..=.      ...+...+.++.+  ..+++-+|-+   .+....++......-++.+..|
T Consensus       247 Ia~dE------~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~  301 (381)
T 3fcp_A          247 ILADE------AVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGG  301 (381)
T ss_dssp             EEEST------TCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEEC
T ss_pred             EEECC------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecC
Confidence            98732      2346777888874  4688999987   3444433332111234555544

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=85.30  E-value=4.3  Score=34.47  Aligned_cols=81  Identities=9%  Similarity=-0.019  Sum_probs=54.0

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .|.+|-.+.+..+++.+   +..|..+.   ...+.+..++.++.+.++|++.+.+.-- ....  +|.++.+.++.+.+
T Consensus       144 ~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~DT-vG~~--~P~~v~~lv~~l~~  220 (423)
T 3ivs_A          144 KDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIADT-VGCA--TPRQVYDLIRTLRG  220 (423)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEEET-TSCC--CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccCCc-cCcC--CHHHHHHHHHHHHh
Confidence            34455555555555555   66666554   2345688899999999999997665433 3333  39999999999998


Q ss_pred             cCCCCEEEEe
Q psy9711          81 NSPIPVIIYN   90 (198)
Q Consensus        81 ~~~~pi~lYn   90 (198)
                      ..++||-++-
T Consensus       221 ~~~~~i~~H~  230 (423)
T 3ivs_A          221 VVSCDIECHF  230 (423)
T ss_dssp             HCSSEEEEEE
T ss_pred             hcCCeEEEEE
Confidence            8888887663

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=85.30  E-value=3.6  Score=31.65  Aligned_cols=74  Identities=12%  Similarity=0.054  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      =..++++.+.+++   +..++...+..+.+...+..+...+.++|++++.++. .. .  ...   ..+.+. ..++|++
T Consensus        15 f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~-~--~~~---~~~~~~-~~~iPvV   86 (271)
T 2dri_A           15 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD-SD-A--VGN---AVKMAN-QANIPVI   86 (271)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSS-TT-T--THH---HHHHHH-HTTCCEE
T ss_pred             HHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hH-H--HHH---HHHHHH-HCCCcEE
Confidence            3445565555555   6676665555666666777788888899999986543 11 1  122   233333 4589999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      +.|.+
T Consensus        87 ~i~~~   91 (271)
T 2dri_A           87 TLDRQ   91 (271)
T ss_dssp             EESSC
T ss_pred             EecCC
Confidence            99874

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=85.25  E-value=11  Score=28.99  Aligned_cols=111  Identities=15%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCe---EEEeC------CCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH--
Q psy9711           7 STEEEKLKIISTLRQETKKT---IIAGT------YCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE--   68 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~p---vi~gv------~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~--   68 (198)
                      ++.++..++-+.+.+. ++.   +.++.      ++.+       .+...+.++.|+++|+..+.+.+...... .+.  
T Consensus        44 ~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~-~~~~~  121 (285)
T 1qtw_A           44 LTTQTIDEFKAACEKY-HYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQ-ISEED  121 (285)
T ss_dssp             CCHHHHHHHHHHHHHT-TCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTT-SCHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCC-CCHHH
Confidence            6677777777776655 444   32221      1111       23345567888999999998876544322 013  


Q ss_pred             --HHHHHHHHHHHcc-CCCCEEEEeCCCCcc-cccCHHHHHHHHc-C---CCEEEEeeC
Q psy9711          69 --DLIYEHFISVADN-SPIPVIIYNNTFVTN-IDISVDTLVKLAH-H---ENIRGVKDT  119 (198)
Q Consensus        69 --~~i~~y~~~i~~~-~~~pi~lYn~P~~tg-~~l~~~~l~~L~~-~---p~i~giK~s  119 (198)
                        +.+.+.++.+++. .++.+.+-|.+.... ..-+++.+.+|.+ +   ||+--+=|.
T Consensus       122 ~~~~~~~~l~~l~a~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~~~g~~~D~  180 (285)
T 1qtw_A          122 CLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT  180 (285)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHHHHHHHHHCSCGGGEEEEEEH
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEecCCCCCCcccCCHHHHHHHHHhhcCccceEEEEEh
Confidence              2355667777654 478888988864321 1237788888873 5   665544444

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=85.10  E-value=6.6  Score=31.24  Aligned_cols=73  Identities=11%  Similarity=0.109  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      -..++++-+.+++   +..++...+..+.+...+..+...+.++|++++.+..   .+  .+.    +...++..++|++
T Consensus        77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~~--~~~----~~~~~~~~~iPvV  147 (338)
T 3dbi_A           77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF---LS--VDE----IDDIIDAHSQPIM  147 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS---SC--HHH----HHHHHHHCSSCEE
T ss_pred             hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC---CC--hHH----HHHHHHcCCCCEE
Confidence            3445555555555   7777776677777888888888889999999997643   22  333    3345566789999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      +.|.+
T Consensus       148 ~~~~~  152 (338)
T 3dbi_A          148 VLNRR  152 (338)
T ss_dssp             EESSC
T ss_pred             EEcCC
Confidence            99864

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=85.09  E-value=6.6  Score=30.10  Aligned_cols=74  Identities=5%  Similarity=0.008  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +..-..++++.+.+++   +..++......+.+...+..+...+.++|++++.+...          ...++.+. ..++
T Consensus        18 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----------~~~~~~l~-~~~i   86 (276)
T 3jy6_A           18 DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN----------PQTVQEIL-HQQM   86 (276)
T ss_dssp             TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC----------HHHHHHHH-TTSS
T ss_pred             CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc----------HHHHHHHH-HCCC
Confidence            3344556666665555   77777766667777778888889899999999986542          23444443 4689


Q ss_pred             CEEEEeCC
Q psy9711          85 PVIIYNNT   92 (198)
Q Consensus        85 pi~lYn~P   92 (198)
                      |+++.+.+
T Consensus        87 PvV~i~~~   94 (276)
T 3jy6_A           87 PVVSVDRE   94 (276)
T ss_dssp             CEEEESCC
T ss_pred             CEEEEecc
Confidence            99999874

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A

Probab=85.07  E-value=15  Score=30.58  Aligned_cols=103  Identities=8%  Similarity=-0.008  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      +.++-.+.++.+++.. ++++++=+ ++-+.++++++++..++.|+..+  --|.       + + .+.++.|.+++++|
T Consensus       195 ~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~i--EqP~-------~-d-~~~~~~l~~~~~iP  263 (398)
T 4dye_A          195 DCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYL--EDPC-------V-G-IEGMAQVKAKVRIP  263 (398)
T ss_dssp             CHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS-------S-H-HHHHHHHHHHCCSC
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEE--cCCC-------C-C-HHHHHHHHhhCCCC
Confidence            4556667777777777 78888754 45578999999999998876533  3332       2 2 46678888889999


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      |..=..      -.+...+.++.+  ...++-+|-+   .+....++
T Consensus       264 Ia~dE~------~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~i  304 (398)
T 4dye_A          264 LCTNMC------VVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKAL  304 (398)
T ss_dssp             EEESSS------CCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred             EEeCCc------CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHH
Confidence            887332      245667777774  4688899987   45444443

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A

Probab=84.97  E-value=14  Score=29.98  Aligned_cols=112  Identities=18%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhc--CCeEEEeCCCCcH------------------------------HHHHHHHHHHHhcCCCEEEEcC
Q psy9711          11 EKLKIISTLRQET--KKTIIAGTYCEST------------------------------RATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        11 Er~~l~~~~~~~~--~~pvi~gv~~~~~------------------------------~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      ...+.++.+.+..  ++|++..++++=|                              +..++.++...++|+|++++.-
T Consensus       132 ~v~eai~~l~~~l~~~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D  211 (348)
T 4ay7_A          132 VVLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIAD  211 (348)
T ss_dssp             HHHHHHHHHHHHHCTTSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeec
Confidence            3455666666666  8999888776422                              3335566666789999999987


Q ss_pred             CCCcCCCCCHHHHHH----HHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC--CHHHHHHHH
Q psy9711          59 PYYFQKKMTEDLIYE----HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT--DNIKLANMA  128 (198)
Q Consensus        59 P~y~~~~~~~~~i~~----y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s--d~~~~~~~~  128 (198)
                      +.-...-++++...+    |+++|.+..+-+.++ ++.+.     ....+..+++.+ +++++=.+  +.....+.+
T Consensus       212 ~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~ii-h~~g~-----~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~  282 (348)
T 4ay7_A          212 PVASPDLMSPDSFRQFLKSRLQKFASSVNSVTVL-HICGN-----VNPILSDMADCGFEGLSVEEKIGSAKKGKEVI  282 (348)
T ss_dssp             GGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEEEE-ECCSC-----CHHHHHHHHTSCCSEEECCGGGCCHHHHHHHH
T ss_pred             cccccccCCHHHHHHHhhHHHHHHHhhccCCcEE-EecCC-----cHHHHHHHHHhccccccccchhhHHHHHHHHh
Confidence            754321123666554    568899888643333 44332     134677788764 67777555  455544433

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=84.96  E-value=1.3  Score=34.64  Aligned_cols=53  Identities=15%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .++++.+.+.+.++.+.+.|+|++.+.-    ....+.+.+.+..+++-+ +++|+++
T Consensus        14 ~gDP~~~~t~~~~~~l~~~GaD~IelG~----S~g~t~~~~~~~v~~ir~-~~~Pivl   66 (234)
T 2f6u_A           14 KLDPDRTNTDEIIKAVADSGTDAVMISG----TQNVTYEKARTLIEKVSQ-YGLPIVV   66 (234)
T ss_dssp             EECTTSCCCHHHHHHHHTTTCSEEEECC----CTTCCHHHHHHHHHHHTT-SCCCEEE
T ss_pred             eeCCCccccHHHHHHHHHcCCCEEEECC----CCCCCHHHHHHHHHHhcC-CCCCEEE
Confidence            4455555666678888999999999986    122358999999999987 8899886

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=84.85  E-value=11  Score=30.40  Aligned_cols=148  Identities=9%  Similarity=0.038  Sum_probs=91.5

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcC--------CCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQ--------KKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~--------~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +.|+++++.+.+.++..+.++.++++ +|+|-+-  .|....        .-..++-+.+-.+.+.++++.||.+=-.++
T Consensus        58 ~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G  136 (318)
T 1vhn_A           58 ERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLG  136 (318)
T ss_dssp             CTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCC
Confidence            88999999888889999999999999 9999885  454210        001367777888888888899998865543


Q ss_pred             CcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHHHhhcCCCCeEEE-ecC--h-hhHHHHhh-cCCCe
Q psy9711          94 VTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANMANQTKDLNFSVF-AGS--A-GYLLSGLL-VGCAG  156 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~~~~~~~~~~~v~-~G~--d-~~~~~~l~-~G~~G  156 (198)
                      .+..+ +.+...++.+.+ +.+|=.+            ++.    .+.+... ++.|+ +|.  + ......+. .|++|
T Consensus       137 ~~~~~-~~~~a~~l~~~G-~d~i~v~g~~~~~~~~~~~~~~----~i~~i~~-~ipVi~~GgI~s~~da~~~l~~~gad~  209 (318)
T 1vhn_A          137 WEKNE-VEEIYRILVEEG-VDEVFIHTRTVVQSFTGRAEWK----ALSVLEK-RIPTFVSGDIFTPEDAKRALEESGCDG  209 (318)
T ss_dssp             SSSCC-HHHHHHHHHHTT-CCEEEEESSCTTTTTSSCCCGG----GGGGSCC-SSCEEEESSCCSHHHHHHHHHHHCCSE
T ss_pred             CChHH-HHHHHHHHHHhC-CCEEEEcCCCccccCCCCcCHH----HHHHHHc-CCeEEEECCcCCHHHHHHHHHcCCCCE
Confidence            22111 124455554432 2222111            222    2222222 44444 342  1 23456666 69999


Q ss_pred             EEeccccc-chHHHHHHHHHHHcC
Q psy9711         157 GINALSAV-LGGPICELYDLAKAG  179 (198)
Q Consensus       157 ~is~~~n~-~P~~~~~l~~~~~~g  179 (198)
                      ++.|-+.+ -|.++.++.+.+..|
T Consensus       210 V~iGR~~l~~P~l~~~~~~~~~~g  233 (318)
T 1vhn_A          210 LLVARGAIGRPWIFKQIKDFLRSG  233 (318)
T ss_dssp             EEESGGGTTCTTHHHHHHHHHHHS
T ss_pred             EEECHHHHhCcchHHHHHHHHhCC
Confidence            99998755 377777777766544

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=84.70  E-value=2.5  Score=35.09  Aligned_cols=40  Identities=18%  Similarity=0.089  Sum_probs=28.5

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP   59 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P   59 (198)
                      .++.+++..++||++-.. .+    .+.++.+.++|+|++.+...
T Consensus       208 ~i~~lr~~~~~PvivK~v-~~----~e~A~~a~~~GaD~I~vsn~  247 (352)
T 3sgz_A          208 DLSLLQSITRLPIILKGI-LT----KEDAELAMKHNVQGIVVSNH  247 (352)
T ss_dssp             HHHHHHHHCCSCEEEEEE-CS----HHHHHHHHHTTCSEEEECCG
T ss_pred             HHHHHHHhcCCCEEEEec-Cc----HHHHHHHHHcCCCEEEEeCC
Confidence            355555555899877422 23    45688899999999999864

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=84.66  E-value=6.8  Score=30.21  Aligned_cols=73  Identities=12%  Similarity=-0.024  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..++......+.+...+..+...+.++|++++.+....  .  ...   .++.+. ..++|+++
T Consensus        17 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~--~~~---~~~~~~-~~~iPvV~   88 (290)
T 2fn9_A           17 FVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDAD--G--SIA---NVKRAK-EAGIPVFC   88 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTT--T--THH---HHHHHH-HTTCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH--H--HHH---HHHHHH-HCCCeEEE
Confidence            344555555444   666666555566777778888888889999998754311  1  122   233333 46899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        89 ~~~~   92 (290)
T 2fn9_A           89 VDRG   92 (290)
T ss_dssp             ESSC
T ss_pred             EecC
Confidence            9864

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=84.64  E-value=8.6  Score=30.58  Aligned_cols=104  Identities=7%  Similarity=0.011  Sum_probs=71.3

Q ss_pred             CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--cc
Q psy9711          24 KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DI   99 (198)
Q Consensus        24 ~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l   99 (198)
                      +.| +.+-+...+.++.++.++.+.+.|+|.+=+---++..++ ..+.+.+..+.+-+.+ ++|+++-.-+..-|-  ..
T Consensus        38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~-~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~  116 (276)
T 3o1n_A           38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVT-TAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQAL  116 (276)
T ss_dssp             SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTT-CHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCC
T ss_pred             CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccC-cHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCC
Confidence            344 455778889999999999999999999999887776554 2477888888888777 799988776544443  45


Q ss_pred             CHHHHHHHH----cC--CCEEEEeeC-CHHHHHHHH
Q psy9711         100 SVDTLVKLA----HH--ENIRGVKDT-DNIKLANMA  128 (198)
Q Consensus       100 ~~~~l~~L~----~~--p~i~giK~s-d~~~~~~~~  128 (198)
                      +.+...+|.    +.  +..+=|=.. +-..+.+++
T Consensus       117 ~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~  152 (276)
T 3o1n_A          117 TTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATV  152 (276)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHH
Confidence            665444443    33  445555444 444455554

>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}

Probab=84.64  E-value=4.7  Score=30.88  Aligned_cols=74  Identities=8%  Similarity=0.099  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH-HHHccCC
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI-SVADNSP   83 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~-~i~~~~~   83 (198)
                      +..-..++++.+.+++   +..+++.....+.....+..+.+.+.++|++++.+     .+  ++ .   ++ .+ ...+
T Consensus        19 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~-----~~--~~-~---~~~~l-~~~~   86 (277)
T 3e61_A           19 SNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA-----FN--EN-I---IENTL-TDHH   86 (277)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG-----GG--HH-H---HHHHH-HHC-
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-----CC--hH-H---HHHHH-HcCC
Confidence            3344455666665555   77777766666788888889999999999999976     11  32 2   33 33 3459


Q ss_pred             CCEEEEeCCC
Q psy9711          84 IPVIIYNNTF   93 (198)
Q Consensus        84 ~pi~lYn~P~   93 (198)
                      +|+++++.+.
T Consensus        87 iPvV~~~~~~   96 (277)
T 3e61_A           87 IPFVFIDRIN   96 (277)
T ss_dssp             CCEEEGGGCC
T ss_pred             CCEEEEeccC
Confidence            9999998754

>4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A

Probab=84.61  E-value=3.6  Score=35.66  Aligned_cols=167  Identities=10%  Similarity=-0.002  Sum_probs=95.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ....+..+||......+++.+      ++-..+.+.+.+.++.+++++.+.++|+.++|+- +.- ..+     .....+
T Consensus       217 ~Qpf~p~~eRv~~v~eai~rA~~eTGe~K~~~~NiTa~~~~eM~~Ra~~a~e~G~~~vmvd-~~~-G~~-----a~~~La  289 (493)
T 4f0h_A          217 SQPFMRWRERYLFVMEAVNKAAAATGEVKGHYLNVTAATMEEMYARAQLAKELGSVIIMID-LVI-GYT-----AIQTMA  289 (493)
T ss_dssp             SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE-GGG-CHH-----HHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhHCCcceEEeecCCCCHHHHHHHHHHHHhcCCCeEEEe-ccc-ccc-----hhHHHH
Confidence            445677889988777666665      3445678998889999999999999999999875 222 221     122333


Q ss_pred             HHHccCCCCEEEEeCCCCcc-------cccCHHHHH---HHH--c---CCCEEEEeeC-CHHH---HHHHHhhc------
Q psy9711          77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLV---KLA--H---HENIRGVKDT-DNIK---LANMANQT------  131 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~---~L~--~---~p~i~giK~s-d~~~---~~~~~~~~------  131 (198)
                      ..++..++||..+-.  ..|       ..++..++.   ||+  +   .++++| |.+ |...   +...++..      
T Consensus       290 ~~~r~~~l~LH~HRA--ghga~sr~~~hGis~~Vl~Kl~RLaGaD~iH~gT~~G-Klegd~~~~~~~~d~l~~~~~~~d~  366 (493)
T 4f0h_A          290 KWARDNDMILHLHRA--GNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVG-KLEGDPIITRGFYKTLLLPKLERNL  366 (493)
T ss_dssp             HHHHHHTCEEEEECT--TTHHHHSSSSSEECHHHHHHHHHHHTCSEEECCCSSS-TTCCCHHHHHHHHHHHHCSEECCBT
T ss_pred             HHHHHcCceEEeccC--ccccccCCCCCCCCHHHHHHHHHHcCCCeeeecCcCC-cccCCHHHHHHHHHHhhhhhcccch
Confidence            334444787765532  211       234555554   554  2   255544 666 5433   33333210      


Q ss_pred             ------------CCCCeEEEecChh-hHHHHh--hcCCCeEEecccccc--h-------HHHHHHHHHHHcC
Q psy9711         132 ------------KDLNFSVFAGSAG-YLLSGL--LVGCAGGINALSAVL--G-------GPICELYDLAKAG  179 (198)
Q Consensus       132 ------------~~~~~~v~~G~d~-~~~~~l--~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~g  179 (198)
                                  ..+-+.|.+|.-+ ...+.+  ..|-|-++...+.++  |       ..+++-|+++.+|
T Consensus       367 ~~g~~~~q~w~~~k~~~PV~SGGih~g~~p~l~~~~G~D~vl~~GGGi~GHP~G~aAGa~A~RqA~eA~~~~  438 (493)
T 4f0h_A          367 QEGLFFDMDWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQSGATANRVALEAMILA  438 (493)
T ss_dssp             TTTBCSCEECTTCCCCEEEECSSCCGGGHHHHHHHHCSSCEEEESHHHHTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccCcccCCCCceEecCCCCCHHHHHHHHHHhCCcEEEEcCCcccCCCCcccchHHHHHHHHHHHHHh
Confidence                        1355778776543 233332  467765554333332  2       4566667777653

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=84.56  E-value=13  Score=29.35  Aligned_cols=145  Identities=12%  Similarity=0.057  Sum_probs=95.9

Q ss_pred             CCeEEEeC-CCCcHHHHHHHHHHHHh-c-CCCEEEE---cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCccc
Q psy9711          24 KKTIIAGT-YCESTRATIDLTQKAAK-A-GANAALI---LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI   97 (198)
Q Consensus        24 ~~pvi~gv-~~~~~~~~i~~a~~a~~-~-Gad~v~~---~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~   97 (198)
                      ++.++-.+ |+.+.+|+++.+|.|.+ + |-+.+=+   .-+.|..|.  ..+.++--+.+.+ -+..++.|-.+     
T Consensus        73 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD--~~~tv~aa~~L~~-~Gf~Vlpy~~d-----  144 (265)
T 1wv2_A           73 RYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPN--VVETLKAAEQLVK-DGFDVMVYTSD-----  144 (265)
T ss_dssp             TSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBC--HHHHHHHHHHHHT-TTCEEEEEECS-----
T ss_pred             CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcC--HHHHHHHHHHHHH-CCCEEEEEeCC-----
Confidence            67787765 66678999999999999 6 5554433   245566666  8888888888874 57888877765     


Q ss_pred             ccCHHHHHHHHcC-CCEEEE-------eeC--CHHHHHHHHhhcCCCCeEEEec----ChhhHHHHhhcCCCeEEecccc
Q psy9711          98 DISVDTLVKLAHH-ENIRGV-------KDT--DNIKLANMANQTKDLNFSVFAG----SAGYLLSGLLVGCAGGINALSA  163 (198)
Q Consensus        98 ~l~~~~l~~L~~~-p~i~gi-------K~s--d~~~~~~~~~~~~~~~~~v~~G----~d~~~~~~l~~G~~G~is~~~n  163 (198)
                        ++.+-++|.+. +.++--       -.+  |+..+..+.. .  .++.|+.+    ..+....++.+|++|++.+++-
T Consensus       145 --d~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e-~--~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI  219 (265)
T 1wv2_A          145 --DPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILE-E--AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAI  219 (265)
T ss_dssp             --CHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHH-H--CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred             --CHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHh-c--CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHH
Confidence              36777888764 444422       111  6666666553 2  33444432    2246778899999999999875


Q ss_pred             cc---hH-HHHHHHHHHHcCCH
Q psy9711         164 VL---GG-PICELYDLAKAGKW  181 (198)
Q Consensus       164 ~~---P~-~~~~l~~~~~~gd~  181 (198)
                      .-   |. ...++.+++++|+.
T Consensus       220 ~~a~dP~~ma~af~~Av~aGr~  241 (265)
T 1wv2_A          220 AHAKDPVMMAEAMKHAIVAGRL  241 (265)
T ss_dssp             HTSSSHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHH
Confidence            54   54 34555566666653

>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}

Probab=84.54  E-value=4.5  Score=34.42  Aligned_cols=170  Identities=11%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +....+..+||......+++.+     + +--.+.++ .+.++.+++++.++++|++++|+- ++...+    ..    .
T Consensus       201 ~~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT-~~~~em~~Ra~~a~e~G~~~~mvd-~~~~G~----~a----~  270 (432)
T 3nwr_A          201 ANPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNIT-DDLDAMRRHAELVEREGGSCVMAS-INWCGF----SA----I  270 (432)
T ss_dssp             SSCTTSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-SCHHHHHHHHHHHHHTTCCEEEEE-HHHHCH----HH----H
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHhCCcceEEeecC-CCHHHHHHHHHHHHHcCCCEEEEe-ccCCCH----HH----H
Confidence            3455677899988766666555     3 34467888 689999999999999999998875 332232    22    2


Q ss_pred             HHHHccCCCCEEEEeCCCCcc-------cccCHHHHHHHHcC--------CCEEEEeeC--CHH--H-HHHHHhhc--CC
Q psy9711          76 ISVADNSPIPVIIYNNTFVTN-------IDISVDTLVKLAHH--------ENIRGVKDT--DNI--K-LANMANQT--KD  133 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L~~~--------p~i~giK~s--d~~--~-~~~~~~~~--~~  133 (198)
                      +.+++..++||.++-.  ..|       ..++..++.+|.++        |+++| |..  +..  . +...+...  ..
T Consensus       271 ~~l~r~~~~~lh~HrA--~hga~~r~~~~Gi~~~vl~Kl~RlaG~D~ih~gt~~G-K~~e~~~~~~~~~~~~~~~~~~~k  347 (432)
T 3nwr_A          271 QSLRRTTPLVLHAHRN--GYGMMSRDPALGMSFQAYQTLWRLSGVDHMHVHGLAG-KFAQSDAEVIESARDCATPLAAGC  347 (432)
T ss_dssp             HHHHHHCCSEEEEECT--TTTTTTSSTTEEECHHHHHHHHHTBTCSEEEEECTTC-SSSCCHHHHHHHHHHHHSCSSTTC
T ss_pred             HHHHhcCCceEEECcC--cccccccCCCCCcCHHHHHHHHHHcCCCeeecCCCcC-CcCCCcHHHHHHHHHHhCchhcCC
Confidence            3444456788777643  222       23555566666532        44544 664  222  1 22222111  12


Q ss_pred             C--CeEEEecChh--hHHHHh-hcC-CCeEEecccccc---------hHHHHHHHHHHHcCC-HHHH
Q psy9711         134 L--NFSVFAGSAG--YLLSGL-LVG-CAGGINALSAVL---------GGPICELYDLAKAGK-WEEA  184 (198)
Q Consensus       134 ~--~~~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~---------P~~~~~l~~~~~~gd-~~~A  184 (198)
                      +  -|.|.+|.-.  .+...+ ..| -|-++...+.++         ...+++-|+++.+|. .+++
T Consensus       348 ~~~v~PV~SGGih~~~~p~l~~~~G~~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~~l~e~  414 (432)
T 3nwr_A          348 DDAVLPAFSSGQWAGTVQATFDAVRSTDLLFMSGGGILAHPDGPAAGVTSVRQAWAAVQAGTPLPVY  414 (432)
T ss_dssp             CCCCEEEECSSCSGGGHHHHHHHHSSSCSEEECSHHHHTCTTCHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCceEeeecCCCCHHHHHHHHHHhCCCcEEEEcCCccccCCCChHHHHHHHHHHHHHHHcCCCHHHH
Confidence            3  3888887654  233322 467 365554444333         256677788888874 4443

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=84.36  E-value=5.5  Score=31.97  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=40.6

Q ss_pred             eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          30 GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        30 gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      ++--...+++++..+++.+.|+.++.+.+- +.....+++.+...|+.+. ..++||+++-..
T Consensus       120 ~l~~~~~~~a~~el~~~~~~g~~Gv~l~~~-~~~~~l~d~~~~p~~~~~~-e~~lpv~iH~~~  180 (334)
T 2hbv_A          120 QVPLQDLDLACKEASRAVAAGHLGIQIGNH-LGDKDLDDATLEAFLTHCA-NEDIPILVHPWD  180 (334)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHTCCCEEEESC-BTTBCTTSHHHHHHHHHHH-HTTCCEEEECCS
T ss_pred             ecCccCHHHHHHHHHHHHHcCCeEEEECCC-CCCCCCCcHHHHHHHHHHH-HCCCEEEECCCC
Confidence            343334467788888777889999977653 3221123677777777665 579999998753

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=84.35  E-value=4.8  Score=33.72  Aligned_cols=94  Identities=12%  Similarity=0.027  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      +-.+.++.++++.  ++++++=+ ++-+.++++++++..++.|++.+=  -|.-  +.  +   .+.++.|.+++++||+
T Consensus       195 ~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--eP~~--~~--~---~~~~~~l~~~~~iPIa  265 (400)
T 4dxk_A          195 SALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHE--DPIK--MD--S---LSSLTRYAAVSPAPIS  265 (400)
T ss_dssp             HHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEE--CCBC--TT--S---GGGHHHHHHHCSSCEE
T ss_pred             HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEE--cCCC--cc--c---HHHHHHHHHhCCCCEE
Confidence            3456777787776  78888855 566789999999999999876544  3431  11  1   2457888888999998


Q ss_pred             EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      .=.      .-.++..+.++.+  .-.++-+|-+
T Consensus       266 ~dE------~~~~~~~~~~~l~~~a~d~v~~d~~  293 (400)
T 4dxk_A          266 ASE------TLGSRWAFRDLLETGAAGVVMLDIS  293 (400)
T ss_dssp             ECT------TCCHHHHHHHHHHTTCCCEEEECTT
T ss_pred             ecC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence            732      2346778888874  4589999998

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=84.35  E-value=11  Score=29.71  Aligned_cols=111  Identities=9%  Similarity=-0.027  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHHHHHhcCC-eEEEeCC------CCc--------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH---
Q psy9711           7 STEEEKLKIISTLRQETKK-TIIAGTY------CES--------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE---   68 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~-pvi~gv~------~~~--------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~---   68 (198)
                      ++.++..++-+.+.+. ++ ++.++..      +.+        .+...+.++.|+++|+..+.+.|......+ .+   
T Consensus        50 ~~~~~~~~~~~~l~~~-gl~~~~~h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~-~~~~~  127 (303)
T 3aal_A           50 IEELNIEAGRQHMQAH-GIEEIVVHAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAG-VEAGL  127 (303)
T ss_dssp             SGGGCHHHHHHHHHHT-TCCEEEEECCTTCCTTCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSC-HHHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCceEEEeccccccCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCC-HHHHH
Confidence            3455555555555444 66 4554432      112        233445567888999999888665443222 12   


Q ss_pred             HHHHHHHHHHHccC-CCCEEEEeCCCCccccc-CHHHHHHHHc-C---CCEEEEeeC
Q psy9711          69 DLIYEHFISVADNS-PIPVIIYNNTFVTNIDI-SVDTLVKLAH-H---ENIRGVKDT  119 (198)
Q Consensus        69 ~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l-~~~~l~~L~~-~---p~i~giK~s  119 (198)
                      +.+.+.++.+++.. ++.+.+-|.|....... +++.+.+|.+ +   |++--+=|.
T Consensus       128 ~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~vg~~lD~  184 (303)
T 3aal_A          128 RQIIRGLNEVLTREQNVQIALETMAGKGSECGRTFEELAYIIDGVAYNDKLSVCFDT  184 (303)
T ss_dssp             HHHHHHHHHHCCSSCSCEEEEECCCCCTTEECSSHHHHHHHHHHCTTGGGEEEEEEH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCCCCCccCCCHHHHHHHHHhcCCCCCEEEEEEc
Confidence            34456667776554 78888888874322222 8888888873 3   565555554

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=84.32  E-value=11  Score=28.74  Aligned_cols=135  Identities=18%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      ++++.+.+..+.|+.+++--++..   +.++.+.++|+|++.+..-.    +  ++.+.+..+.+- ..++.+++-=+|.
T Consensus        54 ~~~~~lr~~~~~~~~v~lmv~d~~---~~i~~~~~agad~v~vH~~~----~--~~~~~~~~~~i~-~~g~~igv~~~p~  123 (228)
T 1h1y_A           54 PVIQSLRKHTKAYLDCHLMVTNPS---DYVEPLAKAGASGFTFHIEV----S--RDNWQELIQSIK-AKGMRPGVSLRPG  123 (228)
T ss_dssp             HHHHHHHTTCCSEEEEEEESSCGG---GGHHHHHHHTCSEEEEEGGG----C--TTTHHHHHHHHH-HTTCEEEEEECTT
T ss_pred             HHHHHHHhhcCCcEEEEEEecCHH---HHHHHHHHcCCCEEEECCCC----c--ccHHHHHHHHHH-HcCCCEEEEEeCC
Confidence            445555444456777666545543   35666677899999886321    1  211134445553 3466666544553


Q ss_pred             CcccccCHHHHHHHHc---CCCEEEE--------eeC----CHHHHHHHHhhcC-CCCeEEEecCh-hhHHHHhhcCCCe
Q psy9711          94 VTNIDISVDTLVKLAH---HENIRGV--------KDT----DNIKLANMANQTK-DLNFSVFAGSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~---~p~i~gi--------K~s----d~~~~~~~~~~~~-~~~~~v~~G~d-~~~~~~l~~G~~G  156 (198)
                       |    +.+.+..+.+   ....+++        +..    ...++.++. +.. +-.+.+-.|-. +........|+|+
T Consensus       124 -t----~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~-~~~~~~pi~v~GGI~~~ni~~~~~aGaD~  197 (228)
T 1h1y_A          124 -T----PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALR-KKYPSLDIEVDGGLGPSTIDVAASAGANC  197 (228)
T ss_dssp             -S----CGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHH-HHCTTSEEEEESSCSTTTHHHHHHHTCCE
T ss_pred             -C----CHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHH-HhcCCCCEEEECCcCHHHHHHHHHcCCCE
Confidence             1    2344555554   3445544        222    234555544 333 23344445554 3455667789999


Q ss_pred             EEeccccc
Q psy9711         157 GINALSAV  164 (198)
Q Consensus       157 ~is~~~n~  164 (198)
                      ++.|.+-+
T Consensus       198 vvvGsai~  205 (228)
T 1h1y_A          198 IVAGSSIF  205 (228)
T ss_dssp             EEESHHHH
T ss_pred             EEECHHHH
Confidence            99997633

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=84.30  E-value=3.3  Score=35.11  Aligned_cols=89  Identities=11%  Similarity=0.012  Sum_probs=56.1

Q ss_pred             CcHHHHHHHHHHHHh-cCCCEEEEcCCCC----cC-CCCCHHHHHHHHHHHHccC--CCCEEEEeCCCCcccccCHHHHH
Q psy9711          34 ESTRATIDLTQKAAK-AGANAALILCPYY----FQ-KKMTEDLIYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLV  105 (198)
Q Consensus        34 ~~~~~~i~~a~~a~~-~Gad~v~~~~P~y----~~-~~~~~~~i~~y~~~i~~~~--~~pi~lYn~P~~tg~~l~~~~l~  105 (198)
                      .+.++++++++..++ +|+|.+-+....+    +. +...+..-..+.+.|.+.+  ++||+.      .|.-.+++...
T Consensus       261 ~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~------~GgI~t~e~Ae  334 (419)
T 3l5a_A          261 YTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIA------SGGINSPESAL  334 (419)
T ss_dssp             ECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEE------CSSCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEE------ECCCCCHHHHH
Confidence            468999999999999 9999999987653    11 1000100112334444444  589886      45455788888


Q ss_pred             HHHcCCCEEEEeeC---CHHHHHHHH
Q psy9711         106 KLAHHENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus       106 ~L~~~p~i~giK~s---d~~~~~~~~  128 (198)
                      ++.+.-..|++=-.   |+....++.
T Consensus       335 ~~L~~aDlVaiGR~~IanPdlv~ki~  360 (419)
T 3l5a_A          335 DALQHADMVGMSSPFVTEPDFVHKLA  360 (419)
T ss_dssp             HHGGGCSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHhCCcHHHHHHHHHCcHHHHHHH
Confidence            87743445554333   777777765

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=84.30  E-value=13  Score=28.88  Aligned_cols=113  Identities=15%  Similarity=0.120  Sum_probs=66.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCC--------CCc-------HHHHHHHHHHHHhcCCCEEEE-cCCCC---cCCCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTY--------CES-------TRATIDLTQKAAKAGANAALI-LCPYY---FQKKM   66 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~--------~~~-------~~~~i~~a~~a~~~Gad~v~~-~~P~y---~~~~~   66 (198)
                      .++.++..++-+.+.+. ++.+.++.+        +.+       .+...+.++.|+++|+..+.+ ..|.+   +....
T Consensus        43 ~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~  121 (294)
T 3vni_A           43 FYSDIQINELKACAHGN-GITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTI  121 (294)
T ss_dssp             GCCHHHHHHHHHHHHHT-TCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCC
T ss_pred             CcCHHHHHHHHHHHHHc-CCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCC
Confidence            45777777777766655 666655322        111       234456678888999999874 33322   11111


Q ss_pred             CH----HHHHHHHHHHHc---cCCCCEEEEeCCCCccc-ccCHHHHHHHHc---CCCEEEEeeC
Q psy9711          67 TE----DLIYEHFISVAD---NSPIPVIIYNNTFVTNI-DISVDTLVKLAH---HENIRGVKDT  119 (198)
Q Consensus        67 ~~----~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~-~l~~~~l~~L~~---~p~i~giK~s  119 (198)
                      +.    +.+.+.++.+++   ..++.+.+-|.+...+. .-+++.+.+|.+   .||+--.=|.
T Consensus       122 ~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~  185 (294)
T 3vni_A          122 DKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVKQVDHNNVKVMLDT  185 (294)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCEEEEEEh
Confidence            12    345556666665   44789999997643222 236777777773   4676555554

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=84.15  E-value=12  Score=28.67  Aligned_cols=119  Identities=19%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             CCeEEEeCCCCc------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcc-
Q psy9711          24 KKTIIAGTYCES------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN-   96 (198)
Q Consensus        24 ~~pvi~gv~~~~------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg-   96 (198)
                      +-.+|+.+-+..      ..+..++++.+++.|+.++.+.       +  .    ++.+++.+.+++||+--+.....+ 
T Consensus        17 ~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~-------~--~----~~i~~ir~~v~~Pvig~~k~~~~~~   83 (229)
T 3q58_A           17 NGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIE-------G--I----ENLRTVRPHLSVPIIGIIKRDLTGS   83 (229)
T ss_dssp             HCCEEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEEE-------S--H----HHHHHHGGGCCSCEEEECBCCCSSC
T ss_pred             cCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEEC-------C--H----HHHHHHHHhcCCCEEEEEeecCCCC
Confidence            445666555544      7889999999999999999872       2  3    567899999999987333221112 


Q ss_pred             -cccC--HHHHHHHHcC-CCEEEEeeC------CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEE
Q psy9711          97 -IDIS--VDTLVKLAHH-ENIRGVKDT------DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGI  158 (198)
Q Consensus        97 -~~l~--~~~l~~L~~~-p~i~giK~s------d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~i  158 (198)
                       ..++  .+.+.++.+. -.++-+=-+      .+..+.+..++   .+..++....  +....+...|++.+.
T Consensus        84 ~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~---~g~~v~~~v~t~eea~~a~~~Gad~Ig  154 (229)
T 3q58_A           84 PVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRL---HGLLAMADCSTVNEGISCHQKGIEFIG  154 (229)
T ss_dssp             CCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH---TTCEEEEECSSHHHHHHHHHTTCSEEE
T ss_pred             ceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHH---CCCEEEEecCCHHHHHHHHhCCCCEEE
Confidence             2233  3566666643 344443222      33444444422   2455554433  345566788998774

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=84.03  E-value=12  Score=28.49  Aligned_cols=142  Identities=12%  Similarity=0.046  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe---
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN---   90 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn---   90 (198)
                      ++++.+.+..++|++++-+-.+.++    ++.+.++|||++.+......  +  ++.+.+..+..-+...+.+=..+   
T Consensus        65 ~~i~~i~~~~~ipv~v~ggI~~~~~----~~~~l~~Gad~V~lg~~~l~--~--p~~~~~~~~~~g~~~~~~l~~~~g~v  136 (244)
T 1vzw_A           65 ALIAEVAQAMDIKVELSGGIRDDDT----LAAALATGCTRVNLGTAALE--T--PEWVAKVIAEHGDKIAVGLDVRGTTL  136 (244)
T ss_dssp             HHHHHHHHHCSSEEEEESSCCSHHH----HHHHHHTTCSEEEECHHHHH--C--HHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred             HHHHHHHHhcCCcEEEECCcCCHHH----HHHHHHcCCCEEEECchHhh--C--HHHHHHHHHHcCCcEEEEEEccCCEE
Confidence            4566666655999999866555443    56666789999998754332  1  44454555444322211111110   


Q ss_pred             -CCCCc-ccccCHHHHHHHHcC--CCEE--EEee-----C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhc---C
Q psy9711          91 -NTFVT-NIDISVDTLVKLAHH--ENIR--GVKD-----T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLV---G  153 (198)
Q Consensus        91 -~P~~t-g~~l~~~~l~~L~~~--p~i~--giK~-----s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~---G  153 (198)
                       .-.+. ...-+.+...++.+.  ..|.  +++-     . |+..+.++.+ ..+-.+..-.|-.  +.+...+..   |
T Consensus       137 ~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~-~~~ipvia~GGI~~~~d~~~~~~~~~~G  215 (244)
T 1vzw_A          137 RGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA-ATDRPVVASGGVSSLDDLRAIAGLVPAG  215 (244)
T ss_dssp             CCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH-TCSSCEEEESCCCSHHHHHHHHTTGGGT
T ss_pred             EEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHH-hcCCCEEEECCCCCHHHHHHHHhhccCC
Confidence             00011 011123444555543  3332  2221     1 5667776653 3333333333433  356667778   9


Q ss_pred             CCeEEeccccc
Q psy9711         154 CAGGINALSAV  164 (198)
Q Consensus       154 ~~G~is~~~n~  164 (198)
                      ++|++.|.+-+
T Consensus       216 adgv~vG~al~  226 (244)
T 1vzw_A          216 VEGAIVGKALY  226 (244)
T ss_dssp             EEEEEECHHHH
T ss_pred             CceeeeeHHHH
Confidence            99999887633

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=84.00  E-value=7.3  Score=29.82  Aligned_cols=117  Identities=13%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE---EeCCCCcccccCHHHHHHHH
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII---YNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l---Yn~P~~tg~~l~~~~l~~L~  108 (198)
                      |.+.+..-...++.|.+.|+|.+-+..+.....+...+.+.+-.+++.++++ |+.+   ++.|     .++.+.+.+++
T Consensus        65 g~~~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~-----~l~~~~~~~~a  138 (225)
T 1mzh_A           65 GLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIVETP-----YLNEEEIKKAV  138 (225)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEECCGG-----GCCHHHHHHHH
T ss_pred             CccchhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEEeCC-----CCCHHHHHHHH
Confidence            3344565667788999999999987665543211136777777888988887 6543   3333     25665555554


Q ss_pred             c---CCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEE-ec-Ch--hhHHHHhhcCCC
Q psy9711         109 H---HENIRGVKDT--------DNIKLANMANQTKDLNFSVF-AG-SA--GYLLSGLLVGCA  155 (198)
Q Consensus       109 ~---~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~-~G-~d--~~~~~~l~~G~~  155 (198)
                      +   --.+-++|-+        ++..+..+. +..++++.|. +| ..  ......+..|++
T Consensus       139 ~~a~eaGad~I~tstg~~~gga~~~~i~~v~-~~v~~~ipVia~GGI~t~~da~~~l~aGA~  199 (225)
T 1mzh_A          139 EICIEAGADFIKTSTGFAPRGTTLEEVRLIK-SSAKGRIKVKASGGIRDLETAISMIEAGAD  199 (225)
T ss_dssp             HHHHHHTCSEEECCCSCSSSCCCHHHHHHHH-HHHTTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred             HHHHHhCCCEEEECCCCCCCCCCHHHHHHHH-HHhCCCCcEEEECCCCCHHHHHHHHHhCch
Confidence            3   3356677755        334455444 3334455554 23 22  245666788999

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=83.88  E-value=5.2  Score=33.88  Aligned_cols=96  Identities=10%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CC
Q psy9711           9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PI   84 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~   84 (198)
                      .++-.+.++.++++.  ++++.+-+ ++.+.++++++++..++.|++.  +--|..  +.  +   .+.++.|.+++ ++
T Consensus       225 ~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~~--~~--d---~~~~~~l~~~~~~i  295 (441)
T 2hxt_A          225 VQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAW--IEEPTS--PD--D---VLGHAAIRQGITPV  295 (441)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSC--EECCSC--TT--C---HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCe--eeCCCC--HH--H---HHHHHHHHhhCCCC
Confidence            344556677777766  67887754 4556788899998888888774  334431  11  1   34566676666 68


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      ||+.=.      .-.+++.+.++.+  .-+++-+|-+
T Consensus       296 PIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~  326 (441)
T 2hxt_A          296 PVSTGE------HTQNRVVFKQLLQAGAVDLIQIDAA  326 (441)
T ss_dssp             CEEECT------TCCSHHHHHHHHHHTCCSEECCCTT
T ss_pred             CEEEeC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence            887633      2446778888863  4688888887

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=83.82  E-value=6.1  Score=30.40  Aligned_cols=81  Identities=9%  Similarity=0.012  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH--HHHHHHHHccC-CCCEEEE
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI--YEHFISVADNS-PIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i--~~y~~~i~~~~-~~pi~lY   89 (198)
                      .++++...+. +++++.|+.+      ...+..|.+.|+|.+.+       ..  .+.+  .+|.+.+.... ++|++- 
T Consensus       109 ~~v~~~~~~~-g~~~i~G~~t------~~e~~~A~~~Gad~vk~-------FP--a~~~~G~~~lk~i~~~~~~ipvva-  171 (225)
T 1mxs_A          109 EDILEAGVDS-EIPLLPGIST------PSEIMMGYALGYRRFKL-------FP--AEISGGVAAIKAFGGPFGDIRFCP-  171 (225)
T ss_dssp             HHHHHHHHHC-SSCEECEECS------HHHHHHHHTTTCCEEEE-------TT--HHHHTHHHHHHHHHTTTTTCEEEE-
T ss_pred             HHHHHHHHHh-CCCEEEeeCC------HHHHHHHHHCCCCEEEE-------cc--CccccCHHHHHHHHhhCCCCeEEE-


Q ss_pred             eCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711          90 NNTFVTNIDISVDTLVKLAHHENIRGV  116 (198)
Q Consensus        90 n~P~~tg~~l~~~~l~~L~~~p~i~gi  116 (198)
                           +| .++++.+.++.+.+++.|+
T Consensus       172 -----iG-GI~~~N~~~~l~~~Ga~~v  192 (225)
T 1mxs_A          172 -----TG-GVNPANVRNYMALPNVMCV  192 (225)
T ss_dssp             -----BS-SCCTTTHHHHHHSTTBCCE
T ss_pred             -----EC-CCCHHHHHHHHhccCCEEE

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=83.78  E-value=15  Score=29.41  Aligned_cols=138  Identities=13%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             HHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CC
Q psy9711          16 ISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IP   85 (198)
Q Consensus        16 ~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~p   85 (198)
                      ++.+.+..   +++|..-++.    ..++.-+.-++.|.+.|||.+-+..++-...+.+.+.+.+-.+.|.++++   +.
T Consensus        98 V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lK  177 (288)
T 3oa3_A           98 VSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILK  177 (288)
T ss_dssp             HHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEE
T ss_pred             HHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCce


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcC---CCEEEEeeC-----------CHHHHHHHHhh--cCCCCeEEEecChh--hHH
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHH---ENIRGVKDT-----------DNIKLANMANQ--TKDLNFSVFAGSAG--YLL  147 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~---p~i~giK~s-----------d~~~~~~~~~~--~~~~~~~v~~G~d~--~~~  147 (198)
                      +|+     -++ .++.+.+.+.+++   -..-.||-|           |...+++.+ +  ..+-++..-.|.-.  ...
T Consensus       178 VIl-----Et~-~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v-~~~g~~v~VKAAGGIrt~edAl  250 (288)
T 3oa3_A          178 VIL-----ETS-QLTADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVC-DSLQSETRVKASGGIRTIEDCV  250 (288)
T ss_dssp             EEC-----CGG-GCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHH-HHSSSCCEEEEESSCCSHHHHH
T ss_pred             EEE-----ECC-CCCHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHH-HHhCCCceEEEeCCCCCHHHHH


Q ss_pred             HHhhcCCC--eEEec
Q psy9711         148 SGLLVGCA--GGINA  160 (198)
Q Consensus       148 ~~l~~G~~--G~is~  160 (198)
                      ..+.+|++  |.-++
T Consensus       251 ~mi~aGA~RiGtS~g  265 (288)
T 3oa3_A          251 KMVRAGAERLGASAG  265 (288)
T ss_dssp             HHHHTTCSEEEESCH
T ss_pred             HHHHcCCceeehhhH

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=83.77  E-value=9.7  Score=29.24  Aligned_cols=69  Identities=9%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhc---CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           9 EEEKLKIISTLRQET---KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      ..=..++++-+.+++   +.. ++...+..+.+...+..+...+.++|++++.++...              . +...++
T Consensus        22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------------~-~~~~~i   86 (277)
T 3hs3_A           22 NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFTIP--------------P-NFHLNT   86 (277)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCCCC--------------T-TCCCSS
T ss_pred             ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchHHH--------------H-HHhCCC
Confidence            334455566555555   777 777777778888888889999999999999983211              1 235689


Q ss_pred             CEEEEeCC
Q psy9711          85 PVIIYNNT   92 (198)
Q Consensus        85 pi~lYn~P   92 (198)
                      |+++.|.+
T Consensus        87 PvV~~~~~   94 (277)
T 3hs3_A           87 PLVMYDSA   94 (277)
T ss_dssp             CEEEESCC
T ss_pred             CEEEEccc
Confidence            99999875

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=83.75  E-value=11  Score=28.82  Aligned_cols=73  Identities=15%  Similarity=0.282  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      -..++++-+.+++   +..++......+.+...+..+...+.++|++++.+...      .+.+.+..   .+..++|++
T Consensus        21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~------~~~~~~~l---~~~~~iPvV   91 (289)
T 1dbq_A           21 YFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY------PEPLLAML---EEYRHIPMV   91 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCC------CHHHHHHH---HHTTTSCEE
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccC------CHHHHHHH---HhccCCCEE
Confidence            3445555555554   67776665666777778888888889999999976431      23333333   233689999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      ++|.+
T Consensus        92 ~~~~~   96 (289)
T 1dbq_A           92 VMDWG   96 (289)
T ss_dssp             EEECS
T ss_pred             EEccC
Confidence            99874

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=83.74  E-value=16  Score=29.50  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             CeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEEcCCCCcC-C-----C---CCHHHHHHHHHHHHccCCCCEEE--
Q psy9711          25 KTIIAG-TYCESTRATIDLTQKAAKA----GANAALILCPYYFQ-K-----K---MTEDLIYEHFISVADNSPIPVII--   88 (198)
Q Consensus        25 ~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~~~P~y~~-~-----~---~~~~~i~~y~~~i~~~~~~pi~l--   88 (198)
                      .-||+| ++-.|.+.+++.|++.+++    |...++-  ++|.| |     +   ..-++=++..+++++..++|++-  
T Consensus        42 l~vIaGPCsies~e~~~~~A~~lk~~~~~~~~~~v~k--~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev  119 (298)
T 3fs2_A           42 LALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYK--SSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDI  119 (298)
T ss_dssp             CEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEE--CBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             eEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCcEEEE--cccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            457777 5556777778888777765    3444433  33332 1     0   11245566777777777777763  


Q ss_pred             ---------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 ---------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 ---------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                     |-+|+  +..-..++++++++...-+++|-.
T Consensus       120 ~D~~~v~~l~~~vd~lkIgA--~~~~n~~LLr~va~~gkPVilK~G  163 (298)
T 3fs2_A          120 HTEEQCAAVAPVVDVLQIPA--FLCRQTDLLIAAARTGRVVNVKKG  163 (298)
T ss_dssp             CSHHHHHHHTTTCSEEEECG--GGTTCHHHHHHHHHTTSEEEEECC
T ss_pred             CCHHHHHHHHhhCCEEEECc--cccCCHHHHHHHHccCCcEEEeCC
Confidence                           12222  112234466666666666777765

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=83.73  E-value=16  Score=29.64  Aligned_cols=135  Identities=10%  Similarity=0.064  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      ..++++.+.+. +.|+.+.++.  ..+.++.++.+.+.|  ++.+.+-...   ..  +....+..+.+.+.++.|+++ 
T Consensus        83 ~~~~i~~~~~~-g~~v~v~~g~--~~~~~~~a~~~~~~g~~~~~i~i~~~~---G~--~~~~~~~i~~lr~~~~~~~vi-  153 (336)
T 1ypf_A           83 RISFIRDMQSR-GLIASISVGV--KEDEYEFVQQLAAEHLTPEYITIDIAH---GH--SNAVINMIQHIKKHLPESFVI-  153 (336)
T ss_dssp             HHHHHHHHHHT-TCCCEEEECC--SHHHHHHHHHHHHTTCCCSEEEEECSS---CC--SHHHHHHHHHHHHHCTTSEEE-
T ss_pred             HHHHHHHHHhc-CCeEEEeCCC--CHHHHHHHHHHHhcCCCCCEEEEECCC---CC--cHHHHHHHHHHHHhCCCCEEE-
Confidence            34444444332 6677666543  355678889999999  8988764321   12  666778888888888756555 


Q ss_pred             eCCCCcccccCHHHHHHHHcCCCEEEEeeC-------C-------------HHHHHHHHhhcCCCCeEEEe--cC--hhh
Q psy9711          90 NNTFVTNIDISVDTLVKLAHHENIRGVKDT-------D-------------NIKLANMANQTKDLNFSVFA--GS--AGY  145 (198)
Q Consensus        90 n~P~~tg~~l~~~~l~~L~~~p~i~giK~s-------d-------------~~~~~~~~~~~~~~~~~v~~--G~--d~~  145 (198)
                           .|...+++...++.+. .+-+|..+       +             ...+.++. +..  ++.|+.  |.  ...
T Consensus       154 -----~G~v~s~e~A~~a~~a-Gad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~-~~~--~ipVIa~GGI~~g~D  224 (336)
T 1ypf_A          154 -----AGNVGTPEAVRELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCA-KAA--SKPIIADGGIRTNGD  224 (336)
T ss_dssp             -----EEEECSHHHHHHHHHH-TCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHH-HTC--SSCEEEESCCCSTHH
T ss_pred             -----ECCcCCHHHHHHHHHc-CCCEEEEecCCCceeecccccCcCCchhHHHHHHHHH-HHc--CCcEEEeCCCCCHHH
Confidence                 2334577877777653 23333332       0             12223333 222  455554  32  235


Q ss_pred             HHHHhhcCCCeEEeccccc
Q psy9711         146 LLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       146 ~~~~l~~G~~G~is~~~n~  164 (198)
                      ...++.+|++++..|.+.+
T Consensus       225 v~kalalGAdaV~iGr~~l  243 (336)
T 1ypf_A          225 VAKSIRFGATMVMIGSLFA  243 (336)
T ss_dssp             HHHHHHTTCSEEEESGGGT
T ss_pred             HHHHHHcCCCEEEeChhhh
Confidence            7788999999999998866

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=83.65  E-value=3.6  Score=33.29  Aligned_cols=82  Identities=16%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-CCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-KMTEDLIYEHFISVADNSPIPVIIYNNTF   93 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~~~~~~i~~y~~~i~~~~~~pi~lYn~P~   93 (198)
                      +++.+.+. ++||+..+.+      .+.++.+.+.|+|++.+..+..... ...+..-.+.++++.+.+++||+.     
T Consensus       110 ~~~~l~~~-gi~vi~~v~t------~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPvia-----  177 (328)
T 2gjl_A          110 HIAEFRRH-GVKVIHKCTA------VRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIA-----  177 (328)
T ss_dssp             HHHHHHHT-TCEEEEEESS------HHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEE-----
T ss_pred             HHHHHHHc-CCCEEeeCCC------HHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEE-----
Confidence            34444333 7788776642      3446678899999999976543211 100112346778888888999987     


Q ss_pred             CcccccCHHHHHHHHc
Q psy9711          94 VTNIDISVDTLVKLAH  109 (198)
Q Consensus        94 ~tg~~l~~~~l~~L~~  109 (198)
                      ..|. -+++.+.+..+
T Consensus       178 aGGI-~~~~~v~~al~  192 (328)
T 2gjl_A          178 SGGF-ADGRGLVAALA  192 (328)
T ss_dssp             ESSC-CSHHHHHHHHH
T ss_pred             ECCC-CCHHHHHHHHH
Confidence            2232 25666665543

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=83.59  E-value=4.3  Score=31.55  Aligned_cols=79  Identities=9%  Similarity=0.052  Sum_probs=50.7

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNT   92 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P   92 (198)
                      ++++.+.+. ++|++.|+.+  .    .-+..|.++|+|.+-+.| .    +  .-+=.+|.+++.... ++|++-    
T Consensus       118 ~vi~~~~~~-gi~~ipGv~T--p----tEi~~A~~~Gad~vK~FP-a----~--~~gG~~~lkal~~p~p~ip~~p----  179 (232)
T 4e38_A          118 NTVRACQEI-GIDIVPGVNN--P----STVEAALEMGLTTLKFFP-A----E--ASGGISMVKSLVGPYGDIRLMP----  179 (232)
T ss_dssp             HHHHHHHHH-TCEEECEECS--H----HHHHHHHHTTCCEEEECS-T----T--TTTHHHHHHHHHTTCTTCEEEE----
T ss_pred             HHHHHHHHc-CCCEEcCCCC--H----HHHHHHHHcCCCEEEECc-C----c--cccCHHHHHHHHHHhcCCCeee----
Confidence            444444443 8999999873  3    345566889999998743 2    1  111238889988766 588873    


Q ss_pred             CCcccccCHHHHHHHHcCCCE
Q psy9711          93 FVTNIDISVDTLVKLAHHENI  113 (198)
Q Consensus        93 ~~tg~~l~~~~l~~L~~~p~i  113 (198)
                       ..|+  +++.+.+..+.+++
T Consensus       180 -tGGI--~~~n~~~~l~aGa~  197 (232)
T 4e38_A          180 -TGGI--TPSNIDNYLAIPQV  197 (232)
T ss_dssp             -BSSC--CTTTHHHHHTSTTB
T ss_pred             -EcCC--CHHHHHHHHHCCCe
Confidence             2344  56777777766654

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=83.54  E-value=9.5  Score=29.31  Aligned_cols=73  Identities=5%  Similarity=0.054  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      =..++++-+.+++   +..+++..+..+.+...+..+.+.+.++|++++.++..   +  +    ..++.+ ...++|++
T Consensus        27 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~---~--~----~~~~~l-~~~~iPvV   96 (292)
T 3k4h_A           27 FFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE---N--D----RIIQYL-HEQNFPFV   96 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT---T--C----HHHHHH-HHTTCCEE
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC---C--h----HHHHHH-HHCCCCEE
Confidence            3455666555555   77777776666667778888888899999999976542   1  2    233333 34689999


Q ss_pred             EEeCCC
Q psy9711          88 IYNNTF   93 (198)
Q Consensus        88 lYn~P~   93 (198)
                      +.|.+.
T Consensus        97 ~~~~~~  102 (292)
T 3k4h_A           97 LIGKPY  102 (292)
T ss_dssp             EESCCS
T ss_pred             EECCCC
Confidence            998753

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=83.52  E-value=13  Score=28.25  Aligned_cols=117  Identities=9%  Similarity=-0.011  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEE-
Q psy9711          39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRG-  115 (198)
Q Consensus        39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~g-  115 (198)
                      ..+.++.+.++|+|.+.+..-.-..+.  .+.+.+..+.+.+.. ++++++ +.       -+++...+..+. ...+| 
T Consensus        90 ~~~~i~~~~~~Gad~V~l~~~~~~~~~--~~~~~~~i~~i~~~~~~~~v~~-~~-------~t~~ea~~a~~~Gad~i~~  159 (234)
T 1yxy_A           90 TMTEVDQLAALNIAVIAMDCTKRDRHD--GLDIASFIRQVKEKYPNQLLMA-DI-------STFDEGLVAHQAGIDFVGT  159 (234)
T ss_dssp             SHHHHHHHHTTTCSEEEEECCSSCCTT--CCCHHHHHHHHHHHCTTCEEEE-EC-------SSHHHHHHHHHTTCSEEEC
T ss_pred             hHHHHHHHHHcCCCEEEEcccccCCCC--CccHHHHHHHHHHhCCCCeEEE-eC-------CCHHHHHHHHHcCCCEEee
Confidence            456778889999999987643322221  112334444444444 566554 32       133444444332 23332 


Q ss_pred             ----E----ee-C--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccchH
Q psy9711         116 ----V----KD-T--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGG  167 (198)
Q Consensus       116 ----i----K~-s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~  167 (198)
                          +    |. .  ++..+.++. +. +-.+..-.|-.  +.+...+..|++|++.|.+-+-|+
T Consensus       160 ~v~g~~~~~~~~~~~~~~~i~~~~-~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~p~  222 (234)
T 1yxy_A          160 TLSGYTPYSRQEAGPDVALIEALC-KA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPK  222 (234)
T ss_dssp             TTTTSSTTSCCSSSCCHHHHHHHH-HT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHCHH
T ss_pred             eccccCCCCcCCCCCCHHHHHHHH-hC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence                1    21 1  556666665 32 33343334543  356677889999999998755453

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=83.52  E-value=7  Score=30.06  Aligned_cols=31  Identities=23%  Similarity=0.174  Sum_probs=12.8

Q ss_pred             eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711          26 TIIAGTYCESTRATIDLTQKAAKAGANAALI   56 (198)
Q Consensus        26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~   56 (198)
                      |||.-++-.+.++....++.+.++|||.|=.
T Consensus       122 kvIlet~~l~~e~i~~a~~ia~eaGADfVKT  152 (220)
T 1ub3_A          122 KVILETGYFSPEEIARLAEAAIRGGADFLKT  152 (220)
T ss_dssp             EEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred             eEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence            3444333333344344444444444444433

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=83.50  E-value=2.7  Score=33.16  Aligned_cols=56  Identities=14%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711          15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus        15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .++.+.+..++||+++-|=.+.++    ++.+.++|||++++..-.+...+  +.+..+-|.
T Consensus       169 ~l~~i~~~~~iPviv~gGI~t~ed----a~~~~~~GAdgViVGSAi~~a~d--p~~~~~~l~  224 (264)
T 1xm3_A          169 NLSFIIEQAKVPVIVDAGIGSPKD----AAYAMELGADGVLLNTAVSGADD--PVKMARAMK  224 (264)
T ss_dssp             HHHHHHHHCSSCBEEESCCCSHHH----HHHHHHTTCSEEEESHHHHTSSS--HHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEeCCCCHHH----HHHHHHcCCCEEEEcHHHhCCCC--HHHHHHHHH
Confidence            556666544999998766544555    44556789999999987655444  544444443

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=83.45  E-value=18  Score=29.88  Aligned_cols=130  Identities=14%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHH----------------------------
Q psy9711          24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIY----------------------------   72 (198)
Q Consensus        24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~----------------------------   72 (198)
                      +.|.+.+..-. +-+.+.++.++|+++|+.++++.-  |....-   +.++.                            
T Consensus       121 ~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R---~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~  197 (352)
T 3sgz_A          121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNR---RRDKRNQLNLEANILKAALRALKEEKPTQSVPV  197 (352)
T ss_dssp             TCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCC---HHHHHHHHHSCHHHHTTCC--------------
T ss_pred             CccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcc---hhhhhcCCCCCcccchhhhcccccccccchhhh
Confidence            35556654332 345567888999999999999983  432110   11111                            


Q ss_pred             ---------HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHHHhhc
Q psy9711          73 ---------EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANMANQT  131 (198)
Q Consensus        73 ---------~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~~~~~  131 (198)
                               +..+.|.+.+++||++=..       .+++...++.+. .+-||..+            +...+.++.+ .
T Consensus       198 ~~~d~~~~w~~i~~lr~~~~~PvivK~v-------~~~e~A~~a~~~-GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~-a  268 (352)
T 3sgz_A          198 LFPKASFCWNDLSLLQSITRLPIILKGI-------LTKEDAELAMKH-NVQGIVVSNHGGRQLDEVSASIDALREVVA-A  268 (352)
T ss_dssp             -CCCTTCCHHHHHHHHHHCCSCEEEEEE-------CSHHHHHHHHHT-TCSEEEECCGGGTSSCSSCCHHHHHHHHHH-H
T ss_pred             hccCCCCCHHHHHHHHHhcCCCEEEEec-------CcHHHHHHHHHc-CCCEEEEeCCCCCccCCCccHHHHHHHHHH-H
Confidence                     2344555566788877553       345555544432 23333332            1223333332 2


Q ss_pred             CCCCeEEEe-c-C--hhhHHHHhhcCCCeEEecccccc
Q psy9711         132 KDLNFSVFA-G-S--AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       132 ~~~~~~v~~-G-~--d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                      .++++.|+. | .  ......++.+|++++..|.+.++
T Consensus       269 v~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~  306 (352)
T 3sgz_A          269 VKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (352)
T ss_dssp             HTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            334566553 2 1  23567888999999999886554

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=83.44  E-value=6.8  Score=31.00  Aligned_cols=122  Identities=17%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-C--CEEEEeCCCCcccccCHHHHHHHH
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-I--PVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~--pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      |..+++.-+.-++.|.+.|||.+-+..++-...+.+.+.+.+-.+.|.++++ .  .+|+.     |+ .|+.+.+.+.+
T Consensus       106 G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlE-----t~-~Lt~eei~~A~  179 (260)
T 3r12_A          106 GANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIE-----TC-YLDTEEKIAAC  179 (260)
T ss_dssp             CCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECC-----GG-GCCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEe-----CC-CCCHHHHHHHH
Confidence            5556677788899999999999999988743211247888888888888874 3  33442     22 56777776655


Q ss_pred             c---CCCEEEEeeC-C-------HHHHHHHHhhcCCCCeEE--EecCh--hhHHHHhhcCCC--eEEec
Q psy9711         109 H---HENIRGVKDT-D-------NIKLANMANQTKDLNFSV--FAGSA--GYLLSGLLVGCA--GGINA  160 (198)
Q Consensus       109 ~---~p~i~giK~s-d-------~~~~~~~~~~~~~~~~~v--~~G~d--~~~~~~l~~G~~--G~is~  160 (198)
                      +   --..-.||-| -       ++.+.-+. +..++++.|  -.|.-  ......+.+|++  |.-++
T Consensus       180 ~ia~eaGADfVKTSTGf~~~GAT~edV~lm~-~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~g  247 (260)
T 3r12_A          180 VISKLAGAHFVKTSTGFGTGGATAEDVHLMK-WIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSG  247 (260)
T ss_dssp             HHHHHTTCSEEECCCSSSSCCCCHHHHHHHH-HHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             HHHHHhCcCEEEcCCCCCCCCCCHHHHHHHH-HHhCCCceEEEeCCCCCHHHHHHHHHcCCceeecchH
Confidence            4   3578889988 2       23333333 333455554  44433  245677889999  65444

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=83.28  E-value=4.7  Score=31.74  Aligned_cols=62  Identities=10%  Similarity=-0.078  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC--CcCCCCCHHHHHHHHH
Q psy9711          13 LKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY--YFQKKMTEDLIYEHFI   76 (198)
Q Consensus        13 ~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~--y~~~~~~~~~i~~y~~   76 (198)
                      .++++.+.+.+    ++|||++=+-.+.++..++.+..  .|++++++..-.  |..+..+-+++.+|-+
T Consensus       190 ~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~--~G~~gvivg~al~l~~g~~~~~~~~~~~~~  257 (260)
T 2agk_A          190 ELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELS--HGKVDLTFGSSLDIFGGNLVKFEDCCRWNE  257 (260)
T ss_dssp             HHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHH--TTCEEEECCTTBGGGTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhc--CCCCEEEeeCCHHHcCCCCCCHHHHHHHHH
Confidence            46777788888    89999987777788877766542  299999999884  5443134888888765

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=83.18  E-value=14  Score=28.46  Aligned_cols=30  Identities=17%  Similarity=-0.078  Sum_probs=20.9

Q ss_pred             CeEEEecChh-hHHHHhhcCCCeEEeccccc
Q psy9711         135 NFSVFAGSAG-YLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       135 ~~~v~~G~d~-~~~~~l~~G~~G~is~~~n~  164 (198)
                      .+.|-.|-.. .......+|++.++.|.+-+
T Consensus       175 ~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf  205 (227)
T 1tqx_A          175 NIQVDGGLNIETTEISASHGANIIVAGTSIF  205 (227)
T ss_dssp             EEEEESSCCHHHHHHHHHHTCCEEEESHHHH
T ss_pred             eEEEECCCCHHHHHHHHHcCCCEEEEeHHHh
Confidence            4555566543 55667789999999997633

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=83.16  E-value=16  Score=29.25  Aligned_cols=61  Identities=21%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEEcCCCCcC-C-----C---CCHHHHHHHHHHHHccCCCCEE
Q psy9711          25 KTIIAG-TYCESTRATIDLTQKAAKA----GANAALILCPYYFQ-K-----K---MTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        25 ~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~~~P~y~~-~-----~---~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      .-||+| ++-.|.+.+++.|++.+++    |...++-  ++|.| |     +   ..-++-++..+++++..++|++
T Consensus        18 ~~vIaGPCsie~~~~~~e~A~~lk~~~~~~~~~~v~k--~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~   92 (288)
T 3tml_A           18 FFLIAGTCVVESEQMTIDTAGRLKEICEKLNVPFIYK--SSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVL   92 (288)
T ss_dssp             CEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEE--CBC--------------CHHHHHHHHHHHHHHHCCCEE
T ss_pred             eEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEe--cccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence            456666 3334566666666666654    6665543  22222 1     0   0123444556666665566655

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=83.16  E-value=2.5  Score=35.24  Aligned_cols=93  Identities=5%  Similarity=0.074  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc-----
Q psy9711          10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN-----   81 (198)
Q Consensus        10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~-----   81 (198)
                      ++-.+.++.+++.+  ++++++-+ +..+.++++++++..++.|++  ++--|.-   .  +   .+.++.|.++     
T Consensus       185 ~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iE~P~~---~--d---~~~~~~l~~~l~~~g  254 (392)
T 3p3b_A          185 KRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLY--WLEEAFH---E--D---EALYEDLKEWLGQRG  254 (392)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEE--EEECSSS---C--C---HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC--EEecCCc---c--c---HHHHHHHHHhhccCC
Confidence            34456777777766  78888755 455789999999998887765  4445542   1  2   3456677777     


Q ss_pred             CCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          82 SPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                      +++||+.=.       ..+++.+.++.+  .-+++.+|-+
T Consensus       255 ~~iPIa~dE-------~~~~~~~~~~i~~~~~d~v~ik~~  287 (392)
T 3p3b_A          255 QNVLIADGE-------GLASPHLIEWATRGRVDVLQYDII  287 (392)
T ss_dssp             CCCEEEECC-------SSCCTTHHHHHHTTSCCEECCBTT
T ss_pred             CCccEEecC-------CCCHHHHHHHHHcCCCCEEEeCcc
Confidence            889998743       234556777773  4688888887

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=83.00  E-value=11  Score=29.09  Aligned_cols=81  Identities=10%  Similarity=0.047  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH---HHHHHHHHHHHc---cCCCCEEEEeCCCCcccccCHHHHHHHHc-
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTE---DLIYEHFISVAD---NSPIPVIIYNNTFVTNIDISVDTLVKLAH-  109 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~---~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-  109 (198)
                      +...+.++.|+++|+..+.+.+........++   +.+.+.++.+++   ..++.+.+.|.|..  ..-+++.+.+|.+ 
T Consensus        84 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~--~~~~~~~~~~l~~~  161 (286)
T 3dx5_A           84 EKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLETHPNT--LTDTLPSTLELLGE  161 (286)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTS--TTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCc--CcCCHHHHHHHHHh
Confidence            34455778888999999988765432211113   344555666654   45899999998753  2236777777773 


Q ss_pred             --CCCEEEEeeC
Q psy9711         110 --HENIRGVKDT  119 (198)
Q Consensus       110 --~p~i~giK~s  119 (198)
                        .||+--.=|.
T Consensus       162 ~~~~~vg~~~D~  173 (286)
T 3dx5_A          162 VDHPNLKINLDF  173 (286)
T ss_dssp             HCCTTEEEEEEH
T ss_pred             cCCCCeEEEecc
Confidence              4776555554

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=82.96  E-value=14  Score=28.39  Aligned_cols=119  Identities=16%  Similarity=0.077  Sum_probs=69.8

Q ss_pred             CCeEEEeCCCCc------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcc-
Q psy9711          24 KKTIIAGTYCES------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN-   96 (198)
Q Consensus        24 ~~pvi~gv~~~~------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg-   96 (198)
                      +-.+|+.+-+..      ..+..++++.+++.|+.++.+.       +  .    ++.+++.+.+++||+=-+.....| 
T Consensus        17 ~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~-------~--~----~~i~~ir~~v~~Pvig~~k~d~~~~   83 (232)
T 3igs_A           17 SGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE-------G--I----DNLRMTRSLVSVPIIGIIKRDLDES   83 (232)
T ss_dssp             HCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE-------S--H----HHHHHHHTTCCSCEEEECBCCCSSC
T ss_pred             cCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC-------C--H----HHHHHHHHhcCCCEEEEEeecCCCc
Confidence            345666555544      7889999999999999998872       2  3    567899999999986323221122 


Q ss_pred             -ccc--CHHHHHHHHcC-CCEEEEee-----C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEE
Q psy9711          97 -IDI--SVDTLVKLAHH-ENIRGVKD-----T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGI  158 (198)
Q Consensus        97 -~~l--~~~~l~~L~~~-p~i~giK~-----s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~i  158 (198)
                       ..+  +.+.+.++.+. -.++-+=-     . .+..+.+..++   .+..++....  +....+...|++.+.
T Consensus        84 ~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~---~g~~v~~~v~t~eea~~a~~~Gad~Ig  154 (232)
T 3igs_A           84 PVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHH---HHLLTMADCSSVDDGLACQRLGADIIG  154 (232)
T ss_dssp             CCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH---TTCEEEEECCSHHHHHHHHHTTCSEEE
T ss_pred             ceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHH---CCCEEEEeCCCHHHHHHHHhCCCCEEE
Confidence             223  33566666643 24443322     1 33444443422   2444554332  345566778988664

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=82.84  E-value=3.1  Score=35.24  Aligned_cols=91  Identities=9%  Similarity=0.019  Sum_probs=65.9

Q ss_pred             HHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          14 KIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        14 ~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      +.++.+++++  ++++++=+ ++-+.++++++++..++.|++.+  --|.-  +.  +   .+.++.|.+++++||+.=.
T Consensus       216 e~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~~--~~--d---~~~~~~l~~~~~iPIa~dE  286 (426)
T 4e4f_A          216 KLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWM--EDPTP--AE--N---QACFRLIRQHTVTPIAVGE  286 (426)
T ss_dssp             HHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEE--ECCSC--CS--S---GGGGHHHHTTCCSCEEECT
T ss_pred             HHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE--ECCCC--hH--H---HHHHHHHHhcCCCCEEeCC
Confidence            5677777777  88988855 55678999999999999988755  34431  11  1   3456888889999998733


Q ss_pred             CCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711          91 NTFVTNIDISVDTLVKLAH--HENIRGVKDT  119 (198)
Q Consensus        91 ~P~~tg~~l~~~~l~~L~~--~p~i~giK~s  119 (198)
                            .-.+++.+.++.+  .-.++-+|-+
T Consensus       287 ------~~~~~~~~~~~i~~ga~d~v~~k~~  311 (426)
T 4e4f_A          287 ------VFNSIWDCKQLIEEQLIDYIRTTIT  311 (426)
T ss_dssp             ------TCCSGGGTHHHHHTTCCSEECCCTT
T ss_pred             ------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence                  2345667778774  4578889987

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=82.73  E-value=5.2  Score=34.58  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711          37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG  115 (198)
Q Consensus        37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g  115 (198)
                      .+..+.++.+.++|+|.+.+-...   ..  ++...+..+.+.+.+ ++||+.-+.       .+.+...++.+.. +-+
T Consensus       254 ~~~~~~a~~~~~aG~d~v~i~~~~---G~--~~~~~~~i~~i~~~~~~~pvi~~~v-------~t~~~a~~l~~aG-ad~  320 (514)
T 1jcn_A          254 EDDKYRLDLLTQAGVDVIVLDSSQ---GN--SVYQIAMVHYIKQKYPHLQVIGGNV-------VTAAQAKNLIDAG-VDG  320 (514)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSC---CC--SHHHHHHHHHHHHHCTTCEEEEEEE-------CSHHHHHHHHHHT-CSE
T ss_pred             hhhHHHHHHHHHcCCCEEEeeccC---Cc--chhHHHHHHHHHHhCCCCceEeccc-------chHHHHHHHHHcC-CCE
Confidence            346788888999999999985432   11  445566777777777 799987442       5677777776532 233


Q ss_pred             EeeC---------------------CHHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccccc
Q psy9711         116 VKDT---------------------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAV  164 (198)
Q Consensus       116 iK~s---------------------d~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~n~  164 (198)
                      |+.+                     ....+.++. +..  ++.|+.  |..  .....++.+|++++..|.+.+
T Consensus       321 I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~-~~~--~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l  391 (514)
T 1jcn_A          321 LRVGMGCGSICITQEVMACGRPQGTAVYKVAEYA-RRF--GVPIIADGGIQTVGHVVKALALGASTVMMGSLLA  391 (514)
T ss_dssp             EEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHH-GGG--TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred             EEECCCCCcccccccccCCCccchhHHHHHHHHH-hhC--CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHH
Confidence            3221                     112233333 222  344543  432  357788999999999887644

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=82.66  E-value=3.7  Score=33.28  Aligned_cols=149  Identities=10%  Similarity=0.031  Sum_probs=87.6

Q ss_pred             HHHHHHhcCCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--C---CCcCCC---CCHHHHHHHHHHHHccC-CCC
Q psy9711          16 ISTLRQETKKT-IIAGTYCESTRATIDLTQKAAKAGANAALILC--P---YYFQKK---MTEDLIYEHFISVADNS-PIP   85 (198)
Q Consensus        16 ~~~~~~~~~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P---~y~~~~---~~~~~i~~y~~~i~~~~-~~p   85 (198)
                      ++...+.-+.+ ++.++-+..+      ++.++++|++++.+..  -   .+..|+   .|-+++..|-+.|++.+ ++|
T Consensus         9 Lr~ll~~~~~~i~~~~a~D~~s------A~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~P   82 (302)
T 3fa4_A            9 LRRALENPDSFIVAPGVYDGLS------ARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTP   82 (302)
T ss_dssp             HHHHHHSTTCCEEEEEECSHHH------HHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSC
T ss_pred             HHHHHhCCCCeEEEecCcCHHH------HHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCC
Confidence            33343332444 4668876543      5566778999999842  1   112222   35899999999999986 899


Q ss_pred             EEEEeCCCCcccccCHHHH----HHHHcCCCEEEEeeC--C-H------------------HHHHHHHhh--cCCCCeEE
Q psy9711          86 VIIYNNTFVTNIDISVDTL----VKLAHHENIRGVKDT--D-N------------------IKLANMANQ--TKDLNFSV  138 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l----~~L~~~p~i~giK~s--d-~------------------~~~~~~~~~--~~~~~~~v  138 (198)
                       ++-|.|.-.|   +++.+    +++.+ -.+.|+|.+  . +                  .+++.....  ..+++|.|
T Consensus        83 -viaD~d~Gyg---~~~~v~~tv~~l~~-aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I  157 (302)
T 3fa4_A           83 -VIADADTGYG---GPIMVARTTEQYSR-SGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVV  157 (302)
T ss_dssp             -EEEECTTTTS---SHHHHHHHHHHHHH-TTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred             -EEEECCCCCC---CHHHHHHHHHHHHH-cCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence             5678885433   34333    33333 589999988  1 1                  122222211  12578888


Q ss_pred             EecChhhHH-----------HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711         139 FAGSAGYLL-----------SGLLVGCAGGINALSAVLGGPICELYDLA  176 (198)
Q Consensus       139 ~~G~d~~~~-----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~  176 (198)
                      ..=.|....           ....+|+|++..-. ---++.+.++.+.+
T Consensus       158 ~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g-~~~~~ei~~~~~~~  205 (302)
T 3fa4_A          158 IARTDSLQTHGYEESVARLRAARDAGADVGFLEG-ITSREMARQVIQDL  205 (302)
T ss_dssp             EEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETT-CCCHHHHHHHHHHT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHcCCCEEeecC-CCCHHHHHHHHHHh
Confidence            765554321           23567999885422 12456666776665

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=82.55  E-value=15  Score=29.82  Aligned_cols=43  Identities=26%  Similarity=0.106  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhcCCeEEE-eCCC-CcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711          12 KLKIISTLRQETKKTIIA-GTYC-ESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~-gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      ..++++.+++..++||++ +++. .+    .+.++.+.++|+|++.+..
T Consensus       166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~----~~~a~~a~~~Gad~I~v~~  210 (349)
T 1p0k_A          166 ALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYEAGAAAVDIGG  210 (349)
T ss_dssp             HHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCC----HHHHHHHHHcCCCEEEEcC
Confidence            356677776666899887 3322 23    4567888999999999974

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=82.37  E-value=8.7  Score=32.12  Aligned_cols=113  Identities=11%  Similarity=0.082  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .+.++.++++.  ++++++=+ ++-+.++ +++++..++.|++.+  --|.  .+    ++ .+.++.|.+++++||..=
T Consensus       192 ~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i~~i--EqP~--~~----~d-~~~~~~l~~~~~iPIa~d  261 (400)
T 3mwc_A          192 VEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKCLFH--EQPL--HY----EA-LLDLKELGERIETPICLD  261 (400)
T ss_dssp             HHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCCSCE--ESCS--CT----TC-HHHHHHHHHHSSSCEEES
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCCCEE--eCCC--Ch----hh-HHHHHHHHhhCCCCEEEe
Confidence            34566666665  67777754 3345666 888888888886643  3443  12    11 456778888889999873


Q ss_pred             eCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711          90 NNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG  141 (198)
Q Consensus        90 n~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G  141 (198)
                      .      .-.+...+.++.+  ...++-+|-+   .+....++......-++.+..|
T Consensus       262 E------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~  312 (400)
T 3mwc_A          262 E------SLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGG  312 (400)
T ss_dssp             T------TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred             C------CcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEec
Confidence            2      2346778888884  4688889887   4544444432111234566655

>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}

Probab=82.34  E-value=4.8  Score=33.69  Aligned_cols=150  Identities=14%  Similarity=0.129  Sum_probs=82.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ....+..+||......+++.+     +..+ .+.+++ +.++.+++++.++++|+.++|+- ++...+        .-.+
T Consensus       171 ~qpf~p~~eR~~~~~eai~ra~~eTGe~k~y~~NiTa-~~~em~~ra~~a~e~G~~~~mvd-~~~~G~--------~a~~  240 (378)
T 3qfw_A          171 DQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISG-TLDDMRRQLGVIRDEGIGAVLVA-PMIVGV--------SNFH  240 (378)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHHHHHTCCCEEECBCCS-SHHHHHHHHHHHHHHTCCEEEEC-HHHHCH--------HHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC-CHHHHHHHHHHHHHcCCCEEEEe-ccccCH--------HHHH
Confidence            345677889987666555555     3344 557776 69999999999999999999985 322222        2234


Q ss_pred             HHHccC-CCCEEEEeCCCCcc-cccCH----HHHHHHHcC-----CCEEEEeeC-CHHHHHHH---Hhh---cCCCCeEE
Q psy9711          77 SVADNS-PIPVIIYNNTFVTN-IDISV----DTLVKLAHH-----ENIRGVKDT-DNIKLANM---ANQ---TKDLNFSV  138 (198)
Q Consensus        77 ~i~~~~-~~pi~lYn~P~~tg-~~l~~----~~l~~L~~~-----p~i~giK~s-d~~~~~~~---~~~---~~~~~~~v  138 (198)
                      .+++.. ++|+..+-.  ..| ..++.    ..+.||+-.     |++.| |.+ +.+.....   ..+   ...+-+.|
T Consensus       241 ~l~r~~p~~~lh~HrA--~~gahGi~~~~vl~Kl~RLaG~D~ih~gt~~G-k~~~~~~~~~~~~~~~~q~w~~~~~~~PV  317 (378)
T 3qfw_A          241 AIVKEAAGLVVVAHPA--MAGAAKIAAPLLLGRLFRLFGADATVFPNYGG-RFAYSTASCLALAQAARDPFGKLNACIPT  317 (378)
T ss_dssp             HHHTTCTTCEEEECCT--TC---CBCHHHHHTHHHHHHTCSEEEEECCC---CCCCHHHHHHHHHHHHSCCTTCCCCEEE
T ss_pred             HHHHhCCCCEEEeCcC--chhhccCcHHHHHHHHHHHhCCCcceeCCccC-CcCCCHHHHHHHHHHhcCcccCCCCeEEe
Confidence            555666 677666543  222 34552    345566622     44444 777 54433222   212   12456888


Q ss_pred             EecChh-hHHHH-h-hcCCCeEEecccccc
Q psy9711         139 FAGSAG-YLLSG-L-LVGCAGGINALSAVL  165 (198)
Q Consensus       139 ~~G~d~-~~~~~-l-~~G~~G~is~~~n~~  165 (198)
                      .+|.-. ...+. + ..|-|-++...+.++
T Consensus       318 ~SGGih~~~~p~l~~~~G~Dvvl~~GGG~~  347 (378)
T 3qfw_A          318 PAGGIMLQRVNELLRFYGQDVMLLIGGSLL  347 (378)
T ss_dssp             EESSCCGGGHHHHHHHHCSSCEEEC-----
T ss_pred             ecCCCCHHHHHHHHHHhCCcEEEecCcccc
Confidence            887543 22232 2 357665554444443

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=82.30  E-value=11  Score=31.79  Aligned_cols=89  Identities=17%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-CCC---cC----CCCCHHHHHHHHHHHHccC
Q psy9711          11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-PYY---FQ----KKMTEDLIYEHFISVADNS   82 (198)
Q Consensus        11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~y---~~----~~~~~~~i~~y~~~i~~~~   82 (198)
                      ...++++.+.+..++||++|...     +.+.++.+.++|||++.+.. |-.   .+    ....+-..+....+.++..
T Consensus       171 ~~~e~I~~ik~~~~i~Vi~g~V~-----t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~  245 (400)
T 3ffs_A          171 NIIRTLKEIKSKMNIDVIVGNVV-----TEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKF  245 (400)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEEEC-----SHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHhcCCCeEEEeecC-----CHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhc
Confidence            33556666655448899875221     24566788899999999831 110   00    0001333333333444456


Q ss_pred             CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711          83 PIPVIIYNNTFVTNIDISVDTLVKLAHH  110 (198)
Q Consensus        83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~  110 (198)
                      ++||+-      .|---+++.+.+....
T Consensus       246 ~IPVIA------~GGI~~~~di~kalal  267 (400)
T 3ffs_A          246 GIPIIA------DGGIRYSGDIGKALAV  267 (400)
T ss_dssp             TCCEEE------ESCCCSHHHHHHHHTT
T ss_pred             CCCEEe------cCCCCCHHHHHHHHHc
Confidence            889875      3433456666665543

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=82.03  E-value=3.6  Score=32.73  Aligned_cols=62  Identities=10%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhc-C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          13 LKIISTLRQET-K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        13 ~~l~~~~~~~~-~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      .++++.+++.. + +|||++.|=.+.++    +..+.++|+|+|++..-..-..+  +..+.+-|..-.+
T Consensus       165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsD----Aa~AmeLGAdgVlVgSAI~~a~d--P~~ma~af~~Av~  228 (268)
T 2htm_A          165 RALLELFAREKASLPPVVVDAGLGLPSH----AAEVMELGLDAVLVNTAIAEAQD--PPAMAEAFRLAVE  228 (268)
T ss_dssp             HHHHHHHHHTTTTSSCBEEESCCCSHHH----HHHHHHTTCCEEEESHHHHTSSS--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCHHH----HHHHHHcCCCEEEEChHHhCCCC--HHHHHHHHHHHHH
Confidence            44577777744 7 99999766555554    45677899999999887664444  7777777766433

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=82.03  E-value=7.4  Score=28.17  Aligned_cols=96  Identities=11%  Similarity=0.058  Sum_probs=54.0

Q ss_pred             HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-c-CCCEEEEeeC---CH---HHHHHHHhhcCCCCeEEEecChh
Q psy9711          73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H-HENIRGVKDT---DN---IKLANMANQTKDLNFSVFAGSAG  144 (198)
Q Consensus        73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~-~p~i~giK~s---d~---~~~~~~~~~~~~~~~~v~~G~d~  144 (198)
                      .+...+.+..+.-++.      .|.+.+++.+.+.+ + .|.++|+=-+   ..   ..+.+.+++...+++.|+.|.-.
T Consensus        36 ~~va~~l~~~G~eVi~------lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~  109 (161)
T 2yxb_A           36 KVVARALRDAGFEVVY------TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTI  109 (161)
T ss_dssp             HHHHHHHHHTTCEEEC------CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred             HHHHHHHHHCCCEEEE------CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence            4555566666666553      45678998888777 3 6899999776   22   33333343322235666655321


Q ss_pred             ---hHHHHhhcCCCeEEeccccc--chHHHHHHHH
Q psy9711         145 ---YLLSGLLVGCAGGINALSAV--LGGPICELYD  174 (198)
Q Consensus       145 ---~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~  174 (198)
                         ........|+++++..-++.  ..+.+.++++
T Consensus       110 ~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~  144 (161)
T 2yxb_A          110 PIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE  144 (161)
T ss_dssp             CHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred             chhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence               12223478999877544432  3344444443

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=81.84  E-value=15  Score=28.26  Aligned_cols=71  Identities=10%  Similarity=0.186  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      ..++++-+.+++   +..+++.....+.+...+..+...+.++|++++.++.   .+  .+ .   ++.+. ..++|+++
T Consensus        31 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~~--~~-~---~~~l~-~~~iPvV~  100 (289)
T 2fep_A           31 YSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGN---IT--DE-H---VAEFK-RSPVPIVL  100 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC---CC--HH-H---HHHHH-HSSSCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---CC--HH-H---HHHHH-hcCCCEEE
Confidence            445555555554   6666665555667777788888888999999998653   12  32 2   33333 46899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus       101 ~~~~  104 (289)
T 2fep_A          101 AASV  104 (289)
T ss_dssp             ESCC
T ss_pred             Eccc
Confidence            9874

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=81.83  E-value=3.6  Score=30.72  Aligned_cols=59  Identities=24%  Similarity=0.216  Sum_probs=41.1

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS   77 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~   77 (198)
                      +.++.+.+..+.|+++.-+..+.++..+..    +.|+|++++..-.|..+- +.+++.++.+.
T Consensus       164 ~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~----~~G~~~~~vg~a~~~~~~-~~~~~~~~l~~  222 (237)
T 3cwo_X          164 EMIRFVRPLTTLPIIASGGAGKMEHFLEAF----LAGADAALAASVFHFREI-DVRELKEYLKK  222 (237)
T ss_dssp             HHHHHHGGGCCSCEEEESCCCSHHHHHHHH----HHTCSEEEESHHHHTTSS-CHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCEEecCCCCCHHHHHHHH----HcCcHHHhhhHHHHcCCC-CHHHHHHHHHH
Confidence            344444444489999887776666666543    469999999988876653 48888777653

>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...

Probab=81.78  E-value=5.5  Score=34.38  Aligned_cols=114  Identities=9%  Similarity=-0.015  Sum_probs=66.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ....+-.+||......+++.+      ++--.+.+++.+.++.+++++.++++|+.++|+-. +...++ .-..+.++.+
T Consensus       208 ~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~~eM~~Ra~~a~e~G~~~~mvd~-~~~G~~-a~~~l~~~~r  285 (477)
T 1wdd_A          208 SQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY-LTGGFT-ANTSLAHYCR  285 (477)
T ss_dssp             SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEH-HHHCHH-HHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecCcCCCCHHHHHHHHHHHHHhCCCeEEEec-cccCcH-HHHHHHHhhc
Confidence            345567789987554444443      34446789988899999999999999999998862 221221 0223333333


Q ss_pred             HHHccCCCCEEEEeCCC-----CcccccCHHHHHH---HH--c---CCCEEEEeeC-CHHH
Q psy9711          77 SVADNSPIPVIIYNNTF-----VTNIDISVDTLVK---LA--H---HENIRGVKDT-DNIK  123 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~-----~tg~~l~~~~l~~---L~--~---~p~i~giK~s-d~~~  123 (198)
                          ..++||..+-.-.     .....++..++.+   |+  +   .++++| |.. +...
T Consensus       286 ----~~~l~lh~HRAghga~~r~~~~Gis~~Vl~Kl~RLaGaD~ih~gt~~G-Kleg~~~~  341 (477)
T 1wdd_A          286 ----DNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVG-KLEGEREM  341 (477)
T ss_dssp             ----HHTCEEEEECTTHHHHHSCSSSEECHHHHHHHHHHHCCSEEECCCSSS-SBCCCHHH
T ss_pred             ----cCCeEEEecCCCcccccCCCCCCCcHHHHHHHHHHcCCCccccCCcCC-ccCCCHHH
Confidence                3478877764300     0112355555554   44  2   256644 777 5443

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=81.73  E-value=5.3  Score=33.29  Aligned_cols=40  Identities=10%  Similarity=0.165  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      .++++.+++..++||+++- ..    +.+.++.+.++|+|++.+.
T Consensus       214 ~~~i~~i~~~~~~Pv~vkg-v~----t~e~a~~a~~aGad~I~vs  253 (380)
T 1p4c_A          214 WEALRWLRDLWPHKLLVKG-LL----SAEDADRCIAEGADGVILS  253 (380)
T ss_dssp             HHHHHHHHHHCCSEEEEEE-EC----CHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHhcCCCEEEEe-cC----cHHHHHHHHHcCCCEEEEc
Confidence            4677777776699998752 12    2456888999999999994

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=81.73  E-value=9.6  Score=32.73  Aligned_cols=52  Identities=12%  Similarity=0.036  Sum_probs=41.0

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      +.+..++.++.+.++|||.+.+.-- ....  +|.++.+.++.+.+..++||-++
T Consensus       156 ~~e~~~~~a~~l~~~Gad~I~l~DT-~G~~--~P~~v~~lv~~l~~~~~~~i~~H  207 (464)
T 2nx9_A          156 NLQTWVDVAQQLAELGVDSIALKDM-AGIL--TPYAAEELVSTLKKQVDVELHLH  207 (464)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEET-TSCC--CHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEcCC-CCCc--CHHHHHHHHHHHHHhcCCeEEEE
Confidence            5788899999999999997766432 2333  38999999999988888898877

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=81.71  E-value=8.9  Score=30.36  Aligned_cols=75  Identities=7%  Similarity=-0.211  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711          10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus        10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      .-..++++-+.+++   +..++......+.+...+..+.+.+.+  +|++++.+..       .+.....++.+. ..++
T Consensus        18 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~~i   89 (332)
T 2rjo_A           18 PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND-------SADARVIVEACS-KAGA   89 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS-------HHHHHHHHHHHH-HHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC-------HHHHHHHHHHHH-HCCC
Confidence            33445555555555   666666555566777777888888888  9999987542       333334455543 3589


Q ss_pred             CEEEEeCC
Q psy9711          85 PVIIYNNT   92 (198)
Q Consensus        85 pi~lYn~P   92 (198)
                      |+++.+.+
T Consensus        90 PvV~~~~~   97 (332)
T 2rjo_A           90 YVTTIWNK   97 (332)
T ss_dssp             EEEEESCC
T ss_pred             eEEEECCC
Confidence            99999864

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*

Probab=81.67  E-value=6.6  Score=31.11  Aligned_cols=67  Identities=10%  Similarity=-0.015  Sum_probs=41.2

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCc-----CCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKA-AKAGANAALILCPYYF-----QKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~-----~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      |.--++++.-...+++++..+++ ++.|+.++-+.+.++.     ....+++.+...|+. ++..++||+++-.
T Consensus        94 r~~~~~~v~p~~~~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~lpv~iH~~  166 (327)
T 2dvt_A           94 RFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGE-VEKLDVPFYLHPR  166 (327)
T ss_dssp             TEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHH-HHHHTCCEEEECC
T ss_pred             ceEEEeecCcCCHHHHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHH-HHHcCCeEEECCC
Confidence            44334566555566678878777 4679999976554431     111224555555555 4467999999853

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=81.65  E-value=24  Score=30.14  Aligned_cols=131  Identities=11%  Similarity=0.079  Sum_probs=79.5

Q ss_pred             HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711          16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT   95 (198)
Q Consensus        16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t   95 (198)
                      ++.+.+++.+||+.----.++-    +...+..+|||++++..-.   .+  ++++.++++.. ...++.+++==.    
T Consensus       100 L~~vr~~v~lPvLrKDFI~d~~----Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a-~~lgm~~LvEvh----  165 (452)
T 1pii_A          100 LPIVSQIAPQPILCKDFIIDPY----QIYLARYYQADACLLMLSV---LD--DDQYRQLAAVA-HSLEMGVLTEVS----  165 (452)
T ss_dssp             HHHHHHHCCSCEEEESCCCSHH----HHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHH-HHTTCEEEEEEC----
T ss_pred             HHHHHHhcCCCeEEEeccCCHH----HHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHH-HHcCCeEEEEeC----
Confidence            4445555589998643222333    3444888999999999764   33  66666666554 456887776321    


Q ss_pred             ccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccc
Q psy9711          96 NIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSA  163 (198)
Q Consensus        96 g~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n  163 (198)
                          +.+.+.+-.+ -+.++|+=..       |+....++.. ..+++..+.+...    +........ ++|++-|.+-
T Consensus       166 ----~~eE~~~A~~lga~iIGinnr~L~t~~~dl~~~~~L~~-~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGeal  239 (452)
T 1pii_A          166 ----NEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAP-KLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSAL  239 (452)
T ss_dssp             ----SHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHH-HHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHH
T ss_pred             ----CHHHHHHHHHCCCCEEEEeCCCCCCCCCCHHHHHHHHH-hCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHH
Confidence                3455655544 4678888653       6777777663 3344444543322    234555677 8999888775


Q ss_pred             cch
Q psy9711         164 VLG  166 (198)
Q Consensus       164 ~~P  166 (198)
                      +-+
T Consensus       240 mr~  242 (452)
T 1pii_A          240 MAH  242 (452)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            543

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=81.60  E-value=12  Score=29.11  Aligned_cols=73  Identities=7%  Similarity=0.064  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      =..++++-+.+++   +..+++.....+.+...+..+...+.++|++++.++..   +  + +   .++.+ ...++|++
T Consensus        41 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~--~-~---~~~~l-~~~~iPvV  110 (305)
T 3huu_A           41 FNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK---D--D-P---IEHLL-NEFKVPYL  110 (305)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT---T--C-H---HHHHH-HHTTCCEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcC---C--c-H---HHHHH-HHcCCCEE
Confidence            3455666665555   78888777766677778888888899999999986542   1  2 2   23333 34689999


Q ss_pred             EEeCCC
Q psy9711          88 IYNNTF   93 (198)
Q Consensus        88 lYn~P~   93 (198)
                      +.+.+.
T Consensus       111 ~i~~~~  116 (305)
T 3huu_A          111 IVGKSL  116 (305)
T ss_dssp             EESCCC
T ss_pred             EECCCC
Confidence            998754

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=81.59  E-value=19  Score=29.49  Aligned_cols=43  Identities=19%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711          10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus        10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      ....+.++.+.+.. ++||++|... +    .+.++.+.++|+|++.+.
T Consensus       146 ~~~~~~i~~lr~~~~~~~vi~g~v~-t----~e~A~~a~~aGaD~I~v~  189 (351)
T 2c6q_A          146 EHFVEFVKDVRKRFPQHTIMAGNVV-T----GEMVEELILSGADIIKVG  189 (351)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEEEEC-S----HHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEeCC-C----HHHHHHHHHhCCCEEEEC
Confidence            34566777777777 8999986432 2    456788899999999775

>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}

Probab=81.59  E-value=14  Score=28.46  Aligned_cols=73  Identities=10%  Similarity=0.099  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhc---CCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          12 KLKIISTLRQET---KKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        12 r~~l~~~~~~~~---~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      ..++++-+.+++   +..++ ......+.+...+..+.+.+.|+|++++.+.     .  .+......+.+. ..++|++
T Consensus        19 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~-----~--~~~~~~~~~~~~-~~~ipvV   90 (303)
T 3d02_A           19 FNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN-----D--ANVLEPVFKKAR-DAGIVVL   90 (303)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS-----C--HHHHHHHHHHHH-HTTCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----C--hHHHHHHHHHHH-HCCCeEE
Confidence            344555554444   66664 3445567777788888888889999998754     1  444444455443 4689999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      .++.+
T Consensus        91 ~~~~~   95 (303)
T 3d02_A           91 TNESP   95 (303)
T ss_dssp             EESCT
T ss_pred             EEecC
Confidence            99875

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=81.59  E-value=4.5  Score=32.83  Aligned_cols=65  Identities=9%  Similarity=0.064  Sum_probs=49.2

Q ss_pred             HHHHHHhcCCeEEE-eCCCC-cHHHHHHHHHHHHh-cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          16 ISTLRQETKKTIIA-GTYCE-STRATIDLTQKAAK-AGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        16 ~~~~~~~~~~pvi~-gv~~~-~~~~~i~~a~~a~~-~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ++.+++.+.+||++ |-... +.++.+++.+.+.+ .|+.++.+---.|.++..++..+.+-...|..
T Consensus       229 f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH  296 (307)
T 3fok_A          229 MERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVH  296 (307)
T ss_dssp             HHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHH
Confidence            35666666888755 44433 57899999999999 79999999988888544348888888777765

>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A

Probab=81.54  E-value=4.9  Score=33.91  Aligned_cols=114  Identities=13%  Similarity=0.091  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHHHHhcCCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           8 TEEEKLKIISTLRQETKKTIIAGTYCE-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      +..|-+.+++.+.+. ++||++.++-.     +-....+.+..+.+.|++++.+-.-    ..  ++.+..+.+.+.+.+
T Consensus       163 ~~~Eakaa~~a~~~~-~lPv~iS~T~~~~G~l~G~~~~~~~~~l~~~~~~avGvNC~----~g--P~~~~~~l~~l~~~~  235 (406)
T 1lt8_A          163 HVEEAVWAVETLIAS-GKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCH----FD--PTISLKTVKLMKEGL  235 (406)
T ss_dssp             CHHHHHHHHHHHGGG-TSCEEEEECCBTTBCTTCCCHHHHHHHHHTTTCSEEEEESS----SC--HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-CCcEEEEEEECCCCCcCCCcHHHHHHHhhcCCCCEEEecCC----CC--HHHHHHHHHHHHHhh
Confidence            456666676555443 78998875431     1122334444555678998888651    23  888999998888654


Q ss_pred             -----CCCEEEEeCCCC---------cc-----cccCHH-----HHHHHH----c-CCCEEEEeeC-CHHHHHHHH
Q psy9711          83 -----PIPVIIYNNTFV---------TN-----IDISVD-----TLVKLA----H-HENIRGVKDT-DNIKLANMA  128 (198)
Q Consensus        83 -----~~pi~lYn~P~~---------tg-----~~l~~~-----~l~~L~----~-~p~i~giK~s-d~~~~~~~~  128 (198)
                           +.|+++|-|-+.         ++     +.++++     .+.+.+    + --+|+|=-.. ++..++.+.
T Consensus       236 ~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iIGGCCGTtPeHI~aia  311 (406)
T 1lt8_A          236 EAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIA  311 (406)
T ss_dssp             HTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEECCCTTCCHHHHHHHH
T ss_pred             hhcCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHH
Confidence                 789999987421         00     122332     234443    2 2478887777 888877665

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=81.53  E-value=1.5  Score=35.70  Aligned_cols=73  Identities=16%  Similarity=0.008  Sum_probs=45.6

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT  103 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~  103 (198)
                      ++||++.+.      +.+.++.+.+.|+|++.+..+.....+ .+..-.+..+++.+.+++||+.      .|---+++.
T Consensus       110 g~~v~~~v~------~~~~a~~~~~~GaD~i~v~g~~~GG~~-g~~~~~~ll~~i~~~~~iPVia------aGGI~~~~~  176 (332)
T 2z6i_A          110 GIIVIPVVP------SVALAKRMEKIGADAVIAEGMEAGGHI-GKLTTMTLVRQVATAISIPVIA------AGGIADGEG  176 (332)
T ss_dssp             TCEEEEEES------SHHHHHHHHHTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHHHCSSCEEE------ESSCCSHHH
T ss_pred             CCeEEEEeC------CHHHHHHHHHcCCCEEEEECCCCCCCC-CCccHHHHHHHHHHhcCCCEEE------ECCCCCHHH
Confidence            677776663      244577888999999999765211100 0112346778888888999887      232224677


Q ss_pred             HHHHHc
Q psy9711         104 LVKLAH  109 (198)
Q Consensus       104 l~~L~~  109 (198)
                      +.+..+
T Consensus       177 ~~~al~  182 (332)
T 2z6i_A          177 AAAGFM  182 (332)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=81.52  E-value=5.1  Score=31.43  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             CCeEEEeCCCCcH-------HHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711          24 KKTIIAGTYCEST-------RATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN   90 (198)
Q Consensus        24 ~~pvi~gv~~~~~-------~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn   90 (198)
                      +.+||+-+-..|.       .+..++++.+++.||+++.+. -+.|+..+  .    ++.+.+.+++++||..-+
T Consensus        45 ~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~~GA~~isvlt~~~~f~G~--~----~~l~~i~~~v~lPvl~kd  113 (254)
T 1vc4_A           45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGGS--L----LDLKRVREAVDLPLLRKD  113 (254)
T ss_dssp             SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEECCCSSSCCC--H----HHHHHHHHHCCSCEEEES
T ss_pred             CCcEEeeecCCCcCCCcCCCCCHHHHHHHHHHcCCCEEEEecchhhhccC--H----HHHHHHHHhcCCCEEECC
Confidence            5788987643222       356899999999999999996 45566544  4    477888888999987644

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=81.46  E-value=16  Score=30.21  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC   58 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~   58 (198)
                      +.++.+++..++||+++... +    .+.++.+.++|+|++.+.+
T Consensus       215 ~~i~~l~~~~~~pv~vK~~~-~----~e~a~~a~~~Gad~I~vs~  254 (370)
T 1gox_A          215 KDVAWLQTITSLPILVKGVI-T----AEDARLAVQHGAAGIIVSN  254 (370)
T ss_dssp             HHHHHHHHHCCSCEEEECCC-S----HHHHHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHhCCCEEEEecC-C----HHHHHHHHHcCCCEEEECC
Confidence            34555665559999984332 2    3567888999999999954

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=81.39  E-value=13  Score=28.82  Aligned_cols=72  Identities=7%  Similarity=0.051  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI   87 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~   87 (198)
                      =..++++-+.+++   +..++......+.+...+..+...+.++||+++.++..   +  + ..   .+.+ ...++|++
T Consensus        26 f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~---~--~-~~---~~~l-~~~~iPvV   95 (295)
T 3hcw_A           26 FYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE---N--D-PI---KQML-IDESMPFI   95 (295)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT---T--C-HH---HHHH-HHTTCCEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc---C--h-HH---HHHH-HhCCCCEE
Confidence            3455666665555   77777776666677777888888899999999986532   1  2 22   2333 35689999


Q ss_pred             EEeCC
Q psy9711          88 IYNNT   92 (198)
Q Consensus        88 lYn~P   92 (198)
                      +.+.+
T Consensus        96 ~i~~~  100 (295)
T 3hcw_A           96 VIGKP  100 (295)
T ss_dssp             EESCC
T ss_pred             EECCC
Confidence            99864

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=81.06  E-value=20  Score=28.73  Aligned_cols=30  Identities=30%  Similarity=0.235  Sum_probs=16.5

Q ss_pred             HHhhcCCCeEEec------------ccccchHHHHHHHHHHH
Q psy9711         148 SGLLVGCAGGINA------------LSAVLGGPICELYDLAK  177 (198)
Q Consensus       148 ~~l~~G~~G~is~------------~~n~~P~~~~~l~~~~~  177 (198)
                      .++.+|++|.+--            -..+-|+.+.+|.+.++
T Consensus       229 AAvA~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~  270 (285)
T 3sz8_A          229 AGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMK  270 (285)
T ss_dssp             HHHHHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHH
T ss_pred             HHHHhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHH
Confidence            4566777776521            12345666666665554

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=81.02  E-value=15  Score=28.12  Aligned_cols=71  Identities=11%  Similarity=0.141  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .++++-+.+++   +..++......+.+...+..+...+.++|++++.++.   .+  .+ .   ++.+.+..++|+++.
T Consensus        37 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~---~~--~~-~---~~~l~~~~~iPvV~~  107 (296)
T 3brq_A           37 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF---LS--VD-E---IDDIIDAHSQPIMVL  107 (296)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS---SC--HH-H---HHHHHHTCSSCEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC---CC--hH-H---HHHHHhcCCCCEEEE
Confidence            34454444444   6677666666677777788888888899999998653   12  32 2   233332268999999


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      +.+
T Consensus       108 ~~~  110 (296)
T 3brq_A          108 NRR  110 (296)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            864

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=80.83  E-value=14  Score=28.65  Aligned_cols=72  Identities=13%  Similarity=0.125  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      .++++.+.+++   +..+++..+..+.+...+..+...+.++|++++.+.....    .++.+   +.+ ...++|+++.
T Consensus        18 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~----~~~~~---~~~-~~~~iPvV~~   89 (306)
T 2vk2_A           18 AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG----WEPVL---KEA-KDAEIPVFLL   89 (306)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS----CHHHH---HHH-HHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh----HHHHH---HHH-HHCCCCEEEe
Confidence            34444444444   7777666566677777788888888899999987643211    12232   333 2468999999


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      +.+
T Consensus        90 ~~~   92 (306)
T 2vk2_A           90 DRS   92 (306)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            864

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=80.71  E-value=6.5  Score=30.25  Aligned_cols=74  Identities=12%  Similarity=0.102  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhc---CCeEEEeCC--CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711          11 EKLKIISTLRQET---KKTIIAGTY--CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus        11 Er~~l~~~~~~~~---~~pvi~gv~--~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      =..++++-+.+++   +..++....  ..+.++..+..+.+.+.++|++++.++...       .+...++.+ ...++|
T Consensus        21 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-------~~~~~~~~~-~~~~iP   92 (289)
T 3brs_A           21 FWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYE-------KTYDAAKEI-KDAGIK   92 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTT-------TTHHHHTTT-GGGTCE
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH-------HhHHHHHHH-HHCCCc
Confidence            3445555555554   777766544  456777778888888899999999765321       111233333 346899


Q ss_pred             EEEEeCC
Q psy9711          86 VIIYNNT   92 (198)
Q Consensus        86 i~lYn~P   92 (198)
                      ++++|.+
T Consensus        93 vV~~~~~   99 (289)
T 3brs_A           93 LIVIDSG   99 (289)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9999874

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=80.51  E-value=13  Score=29.21  Aligned_cols=72  Identities=7%  Similarity=-0.012  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhc---CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711          13 LKIISTLRQET---KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII   88 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l   88 (198)
                      .++.+-+.+++   +..+++. .+..+.....+.++.+.+.|+|++++.|.....    -...   .+. +...++|++.
T Consensus        19 ~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~----~~~~---~~~-a~~~gipvV~   90 (316)
T 1tjy_A           19 TSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG----LCPA---LKR-AMQRGVKILT   90 (316)
T ss_dssp             HHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST----THHH---HHH-HHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH----HHHH---HHH-HHHCcCEEEE
Confidence            33444444433   7777664 456677888888888889999999987643211    1222   333 2346899999


Q ss_pred             EeCC
Q psy9711          89 YNNT   92 (198)
Q Consensus        89 Yn~P   92 (198)
                      +|.+
T Consensus        91 ~d~~   94 (316)
T 1tjy_A           91 WDSD   94 (316)
T ss_dssp             ESSC
T ss_pred             ecCC
Confidence            9874

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=80.15  E-value=24  Score=29.11  Aligned_cols=133  Identities=17%  Similarity=0.269  Sum_probs=77.4

Q ss_pred             CCeEEEeCC-CCcHHHHHHHHHHHHhcCCCEEEEcC--CCC----------------------cC-------CC------
Q psy9711          24 KKTIIAGTY-CESTRATIDLTQKAAKAGANAALILC--PYY----------------------FQ-------KK------   65 (198)
Q Consensus        24 ~~pvi~gv~-~~~~~~~i~~a~~a~~~Gad~v~~~~--P~y----------------------~~-------~~------   65 (198)
                      ..|.+.+.. ..+.+.+.+.++.+++.|++++.+..  |..                      ..       ..      
T Consensus       122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  201 (370)
T 1gox_A          122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLS  201 (370)
T ss_dssp             CCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HH
T ss_pred             CCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHH
Confidence            345666643 33556678899999999999988863  332                      00       00      


Q ss_pred             ------CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHH
Q psy9711          66 ------MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANM  127 (198)
Q Consensus        66 ------~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~  127 (198)
                            .++.-..+..+.+.+.+++|+++=..       .+++...++.+. .+.+|+.+            ++..+.++
T Consensus       202 ~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~-------~~~e~a~~a~~~-Gad~I~vs~~ggr~~~~~~~~~~~l~~v  273 (370)
T 1gox_A          202 SYVAGQIDRSLSWKDVAWLQTITSLPILVKGV-------ITAEDARLAVQH-GAAGIIVSNHGARQLDYVPATIMALEEV  273 (370)
T ss_dssp             HHHHHTBCTTCCHHHHHHHHHHCCSCEEEECC-------CSHHHHHHHHHT-TCSEEEECCGGGTSSTTCCCHHHHHHHH
T ss_pred             HHHHhhcCccchHHHHHHHHHHhCCCEEEEec-------CCHHHHHHHHHc-CCCEEEECCCCCccCCCcccHHHHHHHH
Confidence                  00111124467777778999987332       556777666654 34455543            12223444


Q ss_pred             HhhcCCCCeEEEe-c-C--hhhHHHHhhcCCCeEEecccccc
Q psy9711         128 ANQTKDLNFSVFA-G-S--AGYLLSGLLVGCAGGINALSAVL  165 (198)
Q Consensus       128 ~~~~~~~~~~v~~-G-~--d~~~~~~l~~G~~G~is~~~n~~  165 (198)
                      . +..++++.|+. | .  ......++.+|++++..|.+.++
T Consensus       274 ~-~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~  314 (370)
T 1gox_A          274 V-KAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVF  314 (370)
T ss_dssp             H-HHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             H-HHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHH
Confidence            3 23334555543 3 2  23567788899999998876443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1xkya1	292	c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {B	1e-25
d2a6na1	292	c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {E	6e-21
d1xxxa1	296	c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {M	1e-18
d1o5ka_	295	c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermo	4e-16

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Length = 292

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

 Score = 98.0 bits (243), Expect = 1e-25
 Identities = 65/193 (33%), Positives = 113/193 (58%), Gaps = 5/193 (2%)

Query: 4   SFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
           S   T EEK+ +   +     K   +IAGT   +T A+IDLT+KA + G +A +++ PYY
Sbjct: 50  SPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 109

Query: 62  FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN 121
              K +++ +Y+HF ++A+++P+PV++YN    + + ISVDT+V+L+  ENI  +KD   
Sbjct: 110 N--KPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGG 167

Query: 122 IKLANMA-NQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
             L      +    +F+V++G  G  L  + VG  G ++  S V+G  + E+    +AG+
Sbjct: 168 DVLTMTEIIEKTADDFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGE 227

Query: 181 WEEAMKLQHRLVK 193
           +++A KL   LV+
Sbjct: 228 FKKAQKLHQLLVR 240

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

 Score = 85.7 bits (211), Expect = 6e-21
 Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 5/191 (2%)

Query: 4   SFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
           S     +E   ++          I  IAGT   +T   I LTQ+   +G    L + PYY
Sbjct: 48  SATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107

Query: 62  FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-D 120
              + +++ +Y+HF ++A+++ +P I+YN    T  D+  +T+ +LA  +NI G+K+   
Sbjct: 108 N--RPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATG 165

Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
           N+   N   +    +F + +G     L  + +G  G I+  + V    + ++  LA  G 
Sbjct: 166 NLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGH 225

Query: 181 WEEAMKLQHRL 191
           + EA  +  RL
Sbjct: 226 FAEARVINQRL 236

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 296

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 79.6 bits (195), Expect = 1e-18
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 5/192 (2%)

Query: 4   SFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
           S  +T+ EK++++  + +       +IAG     T  +I L +  A  GA+  L++ PYY
Sbjct: 54  SPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 113

Query: 62  FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN 121
              K  +  +  HF +VAD + +P+++Y+    + + I  DT+  LA H NI GVKD   
Sbjct: 114 S--KPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKD-AK 170

Query: 122 IKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKW 181
             L + A    D   + ++G     L  L +G  G I+ ++ +  G + EL     +G  
Sbjct: 171 ADLHSGAQIMADTGLAYYSGDDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDI 230

Query: 182 EEAMKLQHRLVK 193
             A K+   +  
Sbjct: 231 ATARKINIAVAP 242

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

 Score = 72.6 bits (177), Expect = 4e-16
 Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 9/195 (4%)

Query: 4   SFKSTEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
           S    E+E+ K++S   +  + K  +I G    ST  T+ L ++A K GAN  L++ PYY
Sbjct: 48  SPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 107

Query: 62  FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDT- 119
              K T++ +Y+H+  +++ + + +++YN    T +++  +T  ++ A  +N+ G+K+  
Sbjct: 108 N--KPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEAN 165

Query: 120 ---DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLA 176
              D I       +    +F V++G+       L  G  G I+ +S V    + EL    
Sbjct: 166 PDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEY 225

Query: 177 KAGKWEEAMKLQHRL 191
            +G  E++ ++  +L
Sbjct: 226 FSGNLEKSREVHRKL 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	100.0
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	100.0
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	100.0
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	100.0
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	100.0
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	100.0
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	100.0
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.67
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	96.66
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	95.91
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	95.91
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	95.88
d1geha1	307	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	95.85
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	95.02
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	94.91
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	94.89
d2d69a1	291	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	94.81
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	94.34
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	94.17
d2a21a1	263	3-deoxy-D-manno-octulosonate 8-phosphate synthase	94.05
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	94.0
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	93.83
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	93.7
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	93.39
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	93.04
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	92.74
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	92.01
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	91.17
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	90.91
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	90.69
d1bwva1	328	Ribulose 1,5-bisphosphate carboxylase-oxygenase {G	90.39
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	90.16
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	90.06
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	89.76
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	89.63
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	89.62
d2p10a1	197	Uncharacterized protein Mll9387 {Mesorhizobium lot	89.27
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	88.61
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	88.21
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	88.19
d1nu5a1	243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	88.16
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	88.1
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	87.11
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	87.0
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	86.7
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	86.67
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	86.62
d1j93a_	343	Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic	86.59
d2f6ka1	306	Putative amidohydrolase LP2961 {Lactobacillus plan	86.54
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	86.47
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	86.19
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	85.95
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	85.89
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	85.79
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	85.73
d2hbva1	331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	85.59
d5ruba1	320	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	85.39
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.85
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	84.72
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	83.77
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	83.71
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	83.71
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	83.57
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	83.52
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	83.47
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	83.33
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	83.22
d1igwa_	416	Isocitrate lyase {Escherichia coli [TaxId: 562]}	83.05
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	82.91
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	82.19
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	81.92
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	81.66
d1l6sa_	323	5-aminolaevulinate dehydratase, ALAD (porphobilino	81.52
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	81.36
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	81.2
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	81.02
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	80.8
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	80.77
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	80.29
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	80.18
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	80.12

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-49  Score=323.67  Aligned_cols=195  Identities=25%  Similarity=0.413  Sum_probs=186.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           1 YSNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         1 ~gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      .||+++||.+||+++++.+++++  |+||++|+++.+++++++++++|+++|+|+++++||+|++++  ++++++||++|
T Consensus        45 tGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~--~~~i~~~f~~v  122 (292)
T d2a6na1          45 TGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPS--QEGLYQHFKAI  122 (292)
T ss_dssp             TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCCEEEEECCCSSCCC--HHHHHHHHHHH
T ss_pred             ccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCcceeccCCCCCCCC--HHHHHHHHHHH
Confidence            39999999999999999999998  899999999999999999999999999999999999999988  99999999999


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      ++++++||++||+|.++|+.++++++.+|+++|||+|+|++  |...+.+.+ +..+++|.+++|.+..+.+.+..|++|
T Consensus       123 ~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~~pnv~giK~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~G~~G  201 (292)
T d2a6na1         123 AEHTDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIK-ELVSDDFVLLSGDDASALDFMQLGGHG  201 (292)
T ss_dssp             HHTCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCTTHHHHHH-TTSCTTSEEEECCGGGHHHHHHTTCCE
T ss_pred             hhccCCcEEEEEeccccCCccCHHHHHHHhcCCCEEEEEeccCcchhhhhhh-hhcCCccEEeecchhhhhhHhhCCceE
Confidence            99999999999999999999999999999999999999999  888887777 456789999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      ++++++|++|+.++++|+++++||+++|+++|+++.++++.+
T Consensus       202 ~i~~~~~~~p~~~~~i~~~~~~g~~~~a~~l~~~l~~l~~~~  243 (292)
T d2a6na1         202 VISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKL  243 (292)
T ss_dssp             EEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             EEeecchhhhhchhhhhhHhhcCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987653

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=100.00  E-value=1.7e-48  Score=319.58  Aligned_cols=194  Identities=33%  Similarity=0.573  Sum_probs=185.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++.|++++++++++|+++|+|+++++||+|++++  ++++++||++|+
T Consensus        48 GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s--~~~i~~~~~~v~  125 (292)
T d1xkya1          48 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPS--QEGMYQHFKAIA  125 (292)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHh
Confidence            8999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++|+++||+|.++|..++++++.+|+++|||+|+|++  |.....++. +..++++.+++|.|.++.+.+..|++|+
T Consensus       126 ~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~giK~~~~~~~~~~~~~-~~~~~~~~v~~G~~~~~~~~~~~G~~G~  204 (292)
T d1xkya1         126 ESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEII-EKTADDFAVYSGDDGLTLPAMAVGAKGI  204 (292)
T ss_dssp             HTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSSCHHHHHHHH-HHSCTTCEEEESSGGGHHHHHHTTCCEE
T ss_pred             ccCCCcEEEEeCCcccCCccCHHHHhhhccCCCEEEEeccccchhhhheee-eecCCCCEEEECCccccchHHHcCCCcc
Confidence            9999999999999999999999999999999999999998  888877776 4567899999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL  198 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~  198 (198)
                      +++++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus       205 ~~~~~n~~p~~~~~l~~~~~~g~~~~a~~l~~~l~~~~~~~  245 (292)
T d1xkya1         205 VSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDSL  245 (292)
T ss_dssp             EESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987653

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-47  Score=314.90  Aligned_cols=194  Identities=24%  Similarity=0.386  Sum_probs=183.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+|||+||++.+++++++++++|+++|||+++++||+|++++  ++++++||++|+
T Consensus        46 GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s--~~~i~~~~~~ia  123 (295)
T d1o5ka_          46 GESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPT--QEGLYQHYKYIS  123 (295)
T ss_dssp             GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999998  899999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHh--hcCCCCeEEEecChhhHHHHhhcCC
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMAN--QTKDLNFSVFAGSAGYLLSGLLVGC  154 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~--~~~~~~~~v~~G~d~~~~~~l~~G~  154 (198)
                      +++++|+++||+|.++|..++++++.+|+ ++|||+|+|++  |...+.+.++  +..++++.+++|.|.++...+..|+
T Consensus       124 ~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~iK~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~Ga  203 (295)
T d1o5ka_         124 ERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGG  203 (295)
T ss_dssp             TTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHHHHHHHHHHHHCTTCEEEESSGGGHHHHHHHTC
T ss_pred             hccCCCeeEEeccchhcccchhHHHHHHHhhcccccceecCCcchhhhhhHHHHhhhcCCcceeccccccchhhhhhcCC
Confidence            99999999999999999999999999998 59999999999  7766655442  2346889999999999999999999


Q ss_pred             CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|++++.+|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       204 ~G~i~~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~l~~~  246 (295)
T d1o5ka_         204 DGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLMKA  246 (295)
T ss_dssp             CEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccccccchhhHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.3e-48  Score=316.01  Aligned_cols=191  Identities=27%  Similarity=0.409  Sum_probs=183.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++.+  |+|+++|+++.+++++++++++|+++|+|++++.||+|++++  ++++++||++|+
T Consensus        52 GE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~--~~~l~~~~~~v~  129 (296)
T d1xxxa1          52 GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPP--QRGLQAHFTAVA  129 (296)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEEeccCCCCC--HHHHHHHHHHHH
Confidence            8999999999999999999999  899999999999999999999999999999999999999987  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++||++||+|..+|..++++++.+|+++|||+|+|++  |+.++.+.+.   .+++.+++|.|.++++.+..|++|+
T Consensus       130 ~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~~p~i~giK~~s~d~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~G~~G~  206 (296)
T d1xxxa1         130 DATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKDAKADLHSGAQIMA---DTGLAYYSGDDALNLPWLAMGATGF  206 (296)
T ss_dssp             TTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHH---HHCCEEEECSGGGHHHHHHHTCCEE
T ss_pred             HhcCCCEEEEECccccCCCCCHHHHHHhcCCCCeeeeccccccHHHHHhhhc---ccccccccCcccccchhhhcccccc
Confidence            9999999999999999999999999999999999999999  8888877663   3678999999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       207 is~~~n~~P~~~~~i~~~~~~gd~~~A~~l~~~l~~l~~~  246 (296)
T d1xxxa1         207 ISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCNA  246 (296)
T ss_dssp             EESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhccchhHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.3e-47  Score=314.70  Aligned_cols=192  Identities=22%  Similarity=0.348  Sum_probs=183.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||+++++.+++++  |+||++||++.+++++++++++|+++|+|++++.||+|++++  ++++++||+.++
T Consensus        49 GE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~~pP~~~~~s--~~~~~~~~~~v~  126 (293)
T d1f74a_          49 GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTII  126 (293)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEECCCCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCCCEeeccCccccccc--hHHHHHHHhccc
Confidence            8999999999999999999998  999999999999999999999999999999999999999988  999999999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG  157 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~  157 (198)
                      +++++|+++||+|.+||++++++++.+|+++|||+|+|++  |..++.++.+ . .+++.++.|.|.++++.+..|++|+
T Consensus       127 ~~~~~pi~iYn~P~~tg~~l~~~~l~~L~~~~~v~giK~~~~~~~~~~~~~~-~-~~~~~v~~g~~~~~~~~~~~G~~G~  204 (293)
T d1f74a_         127 AETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKK-A-YPNHLIWAGFDEMMLPAASLGVDGA  204 (293)
T ss_dssp             HHHCCCEEEECCSSCSCHHHHHHHHHHHHTSTTEEEEEECCSCHHHHHHHHH-H-CTTSEEEECCGGGHHHHHHTTCCEE
T ss_pred             ccCCceEEEEeeccceeccccchhhhhhhhcccccccccCCCCHHHHHHHhh-c-CCCeEEEeCcccccchhhhCCCccc
Confidence            9999999999999999999999999999999999999999  8888877763 3 4678899999999999999999999


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      +++++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus       205 i~~~~n~~P~~~~~~~~~~~~gd~~~A~~l~~~~~~~~~~  244 (293)
T d1f74a_         205 IGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLIEG  244 (293)
T ss_dssp             EESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhcchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-46  Score=308.73  Aligned_cols=192  Identities=22%  Similarity=0.384  Sum_probs=182.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ||+++||.+||.++++.+++++  |+|+|+||++.+++++++++++|+++|+|+++++||+|++++  ++++++||++++
T Consensus        47 GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~--~~~~~~~~~~~~  124 (295)
T d1hl2a_          47 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFS--FEEHCDHYRAII  124 (295)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCceeeeeeccccCCC--hHHHHHHHHHHh
Confidence            8999999999999999999998  999999999999999999999999999999999999999987  999999999999


Q ss_pred             ccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711          80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG  156 (198)
Q Consensus        80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G  156 (198)
                      +++ ++|+++||+|.++|+.++++++.+|+++|||+|+|++  |+.++.++.+  ..++|.+++|.|..+++.+..|++|
T Consensus       125 ~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgiK~~~~~~~~~~~~~~--~~~~~~v~~g~~~~~~~~~~~G~~G  202 (295)
T d1hl2a_         125 DSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGALKQTSGDLYQMEQIRR--EHPDLVLYNGYDEIFASGLLAGADG  202 (295)
T ss_dssp             HHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECCCCHHHHHHHHH--HCTTCEEEECCGGGHHHHHHHTCCE
T ss_pred             cccCcCcccccccccccccccccccccccccCcchhhhccccccHHHHHHHhh--cCCCceEecccHHHHhhhhccCCCc
Confidence            877 6899999999999999999999999999999999999  8888877763  3567999999999999999999999


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      ++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus       203 ~is~~~n~~p~~~~~i~~~~~~gd~~~A~~l~~~~~~l~~~  243 (295)
T d1hl2a_         203 GIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDL  243 (295)
T ss_dssp             EEETTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccchhccchhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998764

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.1e-44  Score=297.21  Aligned_cols=188  Identities=24%  Similarity=0.268  Sum_probs=174.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHc
Q psy9711           2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~   80 (198)
                      ||+++||.+||.++++.+++. +.++++|+++.|++++++++++|+++|+|+++++||+|+ +++  ++++++||++|++
T Consensus        44 GE~~~Ls~~Er~~~~~~~~~~-~~~~i~gv~~~st~~~i~~a~~a~~~Ga~~~~~~~P~~~~~~~--~~~i~~~f~~Ia~  120 (293)
T d1w3ia_          44 GLGPSLSPEEKLENLKAVYDV-TNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMS--EKHLVKYFKTLCE  120 (293)
T ss_dssp             TTGGGSCHHHHHHHHHHHHTT-CSCEEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCC--HHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHHHhh-ccccccccccchhhhhhhhhhhhhhhccccccccccchhccch--HHHHHHHHHHHHH
Confidence            899999999999999999877 667899999999999999999999999999999999865 566  9999999999999


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEE
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGI  158 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~i  158 (198)
                      ++++|+++||+|.++|++++++++.+|   |||+|+|++  |..++.++. + ..++|.||+|.|.++.+.+..|++|++
T Consensus       121 a~~~pi~lYn~P~~~g~~l~~~~~~~l---~ni~giK~ss~d~~~~~~~~-~-~~~~~~v~~G~d~~~~~~~~~Ga~G~i  195 (293)
T d1w3ia_         121 VSPHPVYLYNYPTATGKDIDAKVAKEI---GCFTGVKDTIENIIHTLDYK-R-LNPNMLVYSGSDMLIATVASTGLDGNV  195 (293)
T ss_dssp             HCSSCEEEEECHHHHSCCCCHHHHHHH---CCEEEEEECCSCHHHHHHHH-H-HCTTSEEEECCSTTHHHHHHTTCCEEE
T ss_pred             hhccceeeeccccccccccchhhHHhh---hhhhccccccccHHHHHHHH-h-hccceecccccccchhhhhccCCceee
Confidence            999999999999999999999987765   999999999  888887766 3 357899999999999999999999999


Q ss_pred             ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711         159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT  197 (198)
Q Consensus       159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  197 (198)
                      |+++|++|++++++|+++++||+++|+++|..+.++++.
T Consensus       196 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~  234 (293)
T d1w3ia_         196 AAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEA  234 (293)
T ss_dssp             CGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ecccchhhhhhhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888753

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.67  E-value=0.032  Score=42.28  Aligned_cols=116  Identities=13%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             HHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCCCc--ccccCHHHHHH---HH-cC-CC
Q psy9711          43 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVT--NIDISVDTLVK---LA-HH-EN  112 (198)
Q Consensus        43 a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~t--g~~l~~~~l~~---L~-~~-p~  112 (198)
                      ++.|.++|+|+|.+.-- +..+.  +++.++...++.+.+   ++|+++--.|...  ....+++.+..   ++ ++ ..
T Consensus        96 ve~a~rlGadaV~~~v~-~g~~~--e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaD  172 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIY-PGSGF--EWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGAD  172 (251)
T ss_dssp             HHHHHHTTCSEEEEEEC-TTSTT--HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhchhceEEEEEe-CCCCc--hHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCC
Confidence            46677899999988743 33344  888899998888766   8999987777432  23456776654   44 44 47


Q ss_pred             EEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh----h----hHHHHhhcCCCeEEecc
Q psy9711         113 IRGVKDT-DNIKLANMANQTKDLNFSVFAGSA----G----YLLSGLLVGCAGGINAL  161 (198)
Q Consensus       113 i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d----~----~~~~~l~~G~~G~is~~  161 (198)
                      |+=++.. +...+.+.........+.+..|..    .    .+-.++..|+.|++.|=
T Consensus       173 ivK~~~p~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GR  230 (251)
T d1ojxa_         173 AMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGR  230 (251)
T ss_dssp             EEEECCCSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred             EEEecCCCcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeech
Confidence            8777777 887777666333344555665532    1    12346788999999884

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.011  Score=46.16  Aligned_cols=91  Identities=20%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCC---cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCE---STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~---~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      ++.+|..+-++.+++..   ++-|++-+-+.   +.++++++++.+.++|||++++..+    .+  .+++    +.+++
T Consensus       130 ~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~----~~--~~~~----~~~~~  199 (289)
T d1muma_         130 VSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI----TE--LAMY----RQFAD  199 (289)
T ss_dssp             CCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC----CC--HHHH----HHHHH
T ss_pred             ecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEecCC----CC--HHHH----HHHHH
Confidence            57788888888888876   45677776554   4899999999999999999987543    22  5544    55666


Q ss_pred             cCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          81 NSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                      .++.|+++=-.+......++.+.+.++
T Consensus       200 ~~~~Pl~~~~~~~~~~p~~s~~eL~~~  226 (289)
T d1muma_         200 AVQVPILANITEFGATPLFTTDELRSA  226 (289)
T ss_dssp             HHCSCBEEECCSSSSSCCCCHHHHHHT
T ss_pred             hcCCCEEEeecCcCCCccchHHHHHHh
Confidence            667888653333222223466655555

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.91  E-value=0.23  Score=37.76  Aligned_cols=141  Identities=14%  Similarity=0.142  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHH--HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRAT--IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~--i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      .+.+.-.++++.+.+.. .+|++.=...+..-.-  -+.++.++++|+|++++.. ..      .++. +-|+..++..+
T Consensus        76 ~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipD-lP------~ee~-~~~~~~~~~~~  147 (267)
T d1qopa_          76 VTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVAD-VP------VEES-APFRQAALRHN  147 (267)
T ss_dssp             CCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETT-CC------GGGC-HHHHHHHHHTT
T ss_pred             chhhhhhhhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccc-hh------hhhh-HHHHHhhhccC
Confidence            46667777888777776 7898776655443322  4678899999999999963 11      1111 34677888889


Q ss_pred             CCEEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhH
Q psy9711          84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYL  146 (198)
Q Consensus        84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~  146 (198)
                      +..+..=.|.     -+.+-+.++++ -+.++         |.|..   +...+.+.+++..  +..+..|.+    +..
T Consensus       148 l~~I~lvaPt-----t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGI~~~e~v  220 (267)
T d1qopa_         148 IAPIFICPPN-----ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH--AAPALQGFGISSPEQV  220 (267)
T ss_dssp             CEEECEECTT-----CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT--CCCEEEESSCCSHHHH
T ss_pred             ceEEEEeccc-----ccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc--cCCceeecccCCHHHH
Confidence            9888777774     35666777774 34444         44443   2333333333333  455666654    234


Q ss_pred             HHHhhcCCCeEEeccc
Q psy9711         147 LSGLLVGCAGGINALS  162 (198)
Q Consensus       147 ~~~l~~G~~G~is~~~  162 (198)
                      ...+..|+||+|-|.+
T Consensus       221 ~~~~~~~ADGvIVGSA  236 (267)
T d1qopa_         221 SAAVRAGAAGAISGSA  236 (267)
T ss_dssp             HHHHHTTCSEEEECHH
T ss_pred             HHHHhcCCCEEEECHH
Confidence            4567889999998874

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.91  E-value=0.25  Score=38.07  Aligned_cols=164  Identities=18%  Similarity=0.149  Sum_probs=98.1

Q ss_pred             CHHHHHHHHHHHHHhc-CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcC-------CCCCHHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET-KKTIIA-GTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQ-------KKMTEDLIYEHFI   76 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~-------~~~~~~~i~~y~~   76 (198)
                      ..++..+-++...... ..++++ -..+.+.++-.+.++.+++.|||++-+-  .|....       ...+++.+.+..+
T Consensus        85 g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~  164 (312)
T d1gtea2          85 TAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICR  164 (312)
T ss_dssp             CHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHH
T ss_pred             chhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHH
Confidence            4566667776666655 444444 3455677888999999999999999885  343211       0113677888888


Q ss_pred             HHHccCCCCEEEEeCCCCcccccCHHHHHHHH-c--CCCEEEE---------e--------------e-----C-C----
Q psy9711          77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H--HENIRGV---------K--------------D-----T-D----  120 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~--~p~i~gi---------K--------------~-----s-d----  120 (198)
                      .+.+.+++||++==.|..+    ....+.+++ +  ...|+.+         +              .     | .    
T Consensus       165 ~v~~~~~~pv~vKl~~~~~----~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~  240 (312)
T d1gtea2         165 WVRQAVQIPFFAKLTPNVT----DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRP  240 (312)
T ss_dssp             HHHHHCSSCEEEEECSCSS----CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHH
T ss_pred             HHhhccCCceeecccccch----hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcch
Confidence            8988899999987666432    233444444 2  3333221         0              0     0 0    


Q ss_pred             --HHHHHHHHhhcCCCCeEEE-e-cC--hhhHHHHhhcCCCeEEecccccc--hHHHHHHHHHHH
Q psy9711         121 --NIKLANMANQTKDLNFSVF-A-GS--AGYLLSGLLVGCAGGINALSAVL--GGPICELYDLAK  177 (198)
Q Consensus       121 --~~~~~~~~~~~~~~~~~v~-~-G~--d~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~~  177 (198)
                        ...+.++. +.. +++.|. + |-  .......+.+|++++..+++.+.  |..+.++.+.++
T Consensus       241 ~al~~v~~~~-~~~-~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~  303 (312)
T d1gtea2         241 IALRAVTTIA-RAL-PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLK  303 (312)
T ss_dssp             HHHHHHHHHH-HHS-TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHH
T ss_pred             hhHHHHHHHH-HHc-CCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHH
Confidence              11222222 222 344443 2 32  23567888999999998887553  777777766443

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=95.88  E-value=0.053  Score=41.65  Aligned_cols=92  Identities=17%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      ..+.+|...-++.+++..   +.-|++-+-+    .+.++++++++.+.++|||.+++..+.   ..  ++.+..+-...
T Consensus       129 ~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~---~~--~~~~~~~~~~~  203 (275)
T d1s2wa_         129 LADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK---AD--PSDIEAFMKAW  203 (275)
T ss_dssp             BCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS---SS--SHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeeecccc---Cc--HHHHHHHHHhh
Confidence            467888888888888775   6667776543    468999999999999999999985542   11  33333322222


Q ss_pred             HccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711          79 ADNSPIPVIIYNNTFVTNIDISVDTLVKL  107 (198)
Q Consensus        79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L  107 (198)
                        ..+.|+++  +|.. +...+.+.+.+|
T Consensus       204 --~~~~pl~~--~~~~-~~~~~~~eL~~l  227 (275)
T d1s2wa_         204 --NNQGPVVI--VPTK-YYKTPTDHFRDM  227 (275)
T ss_dssp             --TTCSCEEE--CCST-TTTSCHHHHHHH
T ss_pred             --cCCCCEEE--eccc-ccccHHHHHHHc
Confidence              34677665  3332 234555555555

>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=95.85  E-value=0.013  Score=46.02  Aligned_cols=176  Identities=13%  Similarity=0.055  Sum_probs=100.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-----CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-----KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-----~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      ........+||.+.+..+++.+     +..+++ .++ .++++.+++++.++++|++++|+.+-.+ ..     +.++..
T Consensus        59 a~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~NiT-~~~~em~~ra~~a~~~G~~~vmi~~~~~-G~-----~al~~l  131 (307)
T d1geha1          59 TSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANIT-ADLLEMEQRLEVLADLGLKHAMVDVVIT-GW-----GALRYI  131 (307)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBCC-SSHHHHHHHHHHHHHHTCCEEEEEHHHH-CH-----HHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEcc-CChHHHHHHHHHHHHcCCCEEEEecccc-ch-----HHHHHH
Confidence            3456678899997666666654     555554 566 4789999999999999999999974322 21     234666


Q ss_pred             HHHHccCCCCEEEEeCCCC-----cccccCHHHHHHH---H--c---CCCEEEEeeC-CHH---HHHHHHhh--------
Q psy9711          76 ISVADNSPIPVIIYNNTFV-----TNIDISVDTLVKL---A--H---HENIRGVKDT-DNI---KLANMANQ--------  130 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~-----tg~~l~~~~l~~L---~--~---~p~i~giK~s-d~~---~~~~~~~~--------  130 (198)
                      ++.++..++||+.+-.-..     ....+|.-++.+|   +  +   .++.-+-|.+ +..   ...+.++.        
T Consensus       132 r~~~~~~~lpIh~H~A~~ga~~~~~~~Gis~~vl~kl~Rl~GaD~ih~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (307)
T d1geha1         132 RDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDEN  211 (307)
T ss_dssp             HHHHHHTTCEEEEECTTGGGTSSCTTSEECHHHHHHHHHHHTCSEEECCCC-----CTHHHHHHHHHHHHHCSEECCCTT
T ss_pred             HHhhccCCeEEEeccccceeeecCccCCccHHHHHHHHHHhCcCceeccccccccccCCHHHHHHHHHHHhhhhcccccc
Confidence            6666667888876643110     1123555555555   3  2   2444445555 332   23333311        


Q ss_pred             ----------cCCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcC-CHHHH
Q psy9711         131 ----------TKDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAG-KWEEA  184 (198)
Q Consensus       131 ----------~~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~g-d~~~A  184 (198)
                                ...+-|.+.+|.-+  .+...+ ..|-|=++...+.++  |       +.+++-|+++.+| +.+++
T Consensus       212 ~~~~~~~~~g~~k~~~Pv~sgG~~~~~vp~~~~~~G~Dvil~~GGgi~gHP~G~aaGa~A~RqA~ea~~~g~~l~e~  288 (307)
T d1geha1         212 DVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEY  288 (307)
T ss_dssp             CCSCCCEECTTCCCCEEEEESSCCTTTHHHHHHHTCSSSEEECSHHHHSCTTCHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred             ccceecccccccCCcccccCCCCcHHHHHHHHHHhCCcEEEEcCccccCCCCChHHHHHHHHHHHHHHHhCCCHHHH
Confidence                      01234677776433  232222 468776666655553  2       6777888888777 34443

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.17  Score=39.60  Aligned_cols=114  Identities=12%  Similarity=0.074  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHhc------CCeEEEeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcC-------CCCcCCCCC
Q psy9711           8 TEEEKLKIISTLRQET------KKTIIAGT-------YCESTRATIDLTQKAAKAGANAALILC-------PYYFQKKMT   67 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~------~~pvi~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~-------P~y~~~~~~   67 (198)
                      |.+.|.+++..++++.      +.+|.+=+       ++.+.++++++++..++.|+|.+.+..       |.+..+. .
T Consensus       186 s~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~-~  264 (330)
T d1ps9a1         186 DYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPV-P  264 (330)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTS-C
T ss_pred             cHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCC-c
Confidence            5778888777666665      45554422       445789999999999999999988753       2222222 1


Q ss_pred             HHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          68 EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        68 ~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      ......+.+.+-..+++||+.      +|.--+++...++.+-  -.+||+=-.   |+....++.
T Consensus       265 ~~~~~~~~~~ik~~~~~pvi~------~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~  324 (330)
T d1ps9a1         265 RGAFSWVTRKLKGHVSLPLVT------TNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ  324 (330)
T ss_dssp             TTTTHHHHHHHTTSCSSCEEE------CSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             chhHHHHHHHHHhhCCceEEE------eCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHH
Confidence            222334456666677999987      3444478888888753  457776433   776666654

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.91  E-value=0.03  Score=44.20  Aligned_cols=168  Identities=8%  Similarity=-0.011  Sum_probs=95.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +.......+||.+.+..+++.+      ++-..+.+.+.+.++.+++++.++++|++++|+.+-. ...     ...++.
T Consensus        57 ~~~~~~p~~eRv~~~~~av~~a~~eTG~~k~y~~nit~~~~~em~~ra~~a~e~G~~~~mi~~~~-~G~-----~a~~~l  130 (325)
T d1wdda1          57 NSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT-GGF-----TANTSL  130 (325)
T ss_dssp             SSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEHHH-HCH-----HHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhCCceeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeccc-ccH-----HHHHHH
Confidence            3456677899987776666655      3455668888789999999999999999999985332 221     123344


Q ss_pred             HHHHccCCCCEEEEeCCCCc-------ccccCHHHHH---HHH--c---CCCEEEEeeC-CHHHHHH---HHhh------
Q psy9711          76 ISVADNSPIPVIIYNNTFVT-------NIDISVDTLV---KLA--H---HENIRGVKDT-DNIKLAN---MANQ------  130 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~t-------g~~l~~~~l~---~L~--~---~p~i~giK~s-d~~~~~~---~~~~------  130 (198)
                      ++.++..++||..+-.  ..       ...++..++.   ||+  +   .|++ +-|.+ +.....+   .++.      
T Consensus       131 ~~~~~~~~l~ih~Hra--~~ga~tr~~~~Gis~~vl~kl~RLaGaD~ih~~~~-~Gk~~~~~~~~~~~~~~l~~~~~~~d  207 (325)
T d1wdda1         131 AHYCRDNGLLLHIHRA--MHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTV-VGKLEGEREMTLGFVDLLRDDFIEKD  207 (325)
T ss_dssp             HHHHHHHTCEEEEECT--THHHHHSCSSSEECHHHHHHHHHHHCCSEEECCCS-SSSBCCCHHHHHHHHHHHHCSEECCB
T ss_pred             HHhhhhcCceeecccc--cccccccCCCCCccHHHHHHHHHHcCCCccccCcc-ccCcCCCHHHHHHHHHHHHhhhcccc
Confidence            4444445788776422  21       1235555555   555  2   2455 45666 5443332   2211      


Q ss_pred             ------------cCCCCeEEEecChh-hHHHHh--hcCCCeEEecccccc--h-------HHHHHHHHHHHc
Q psy9711         131 ------------TKDLNFSVFAGSAG-YLLSGL--LVGCAGGINALSAVL--G-------GPICELYDLAKA  178 (198)
Q Consensus       131 ------------~~~~~~~v~~G~d~-~~~~~l--~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~  178 (198)
                                  ...+-+.+.+|.-+ ..++.+  ..|-|=++...+.++  |       +.+++-|+++.+
T Consensus       208 ~~~~~~~~q~~~~~k~~~Pv~sGG~~~g~vp~~~~~~G~D~il~~GGGi~gHP~G~aAGa~A~RqA~eA~~~  279 (325)
T d1wdda1         208 RARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQ  279 (325)
T ss_dssp             GGGTBCSCEECTTCCCCEEEEESSCCGGGHHHHHHHHCSSSEEECSHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCccccCcccCCCCeeeecCCCCCHhHHHHHHHhcCCcEEEEcCcceecCCCcccchHHHHHHHHHHHHH
Confidence                        01234777776543 233332  356665554444443  2       566666666644

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.89  E-value=0.21  Score=39.14  Aligned_cols=115  Identities=5%  Similarity=0.029  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHHhc----CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET----KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEH   74 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~----~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~~y   74 (198)
                      |.+-|.+++..+++++    +.|+++.++       ..+.++.++.++..+++|+|.+-+..-.+..++  ..+.-...+
T Consensus       188 s~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~  267 (337)
T d1z41a1         188 SPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSF  267 (337)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHH
T ss_pred             hhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHH
Confidence            4677777666666655    667776654       457899999999999999999888754443221  112222344


Q ss_pred             HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                      -+.|-+.+++||+.      +|.--+++...++.+-  -.+||+=-.   |+....++.
T Consensus       268 ~~~ik~~~~~pvi~------~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~  320 (337)
T d1z41a1         268 AEKIREQADMATGA------VGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA  320 (337)
T ss_dssp             HHHHHHHHCCEEEE------CSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             HHHHHHhcCceEEE------eCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHH
Confidence            45566667899986      4444578988888753  457776544   766655554

>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.81  E-value=0.047  Score=42.36  Aligned_cols=174  Identities=14%  Similarity=0.071  Sum_probs=103.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhc-----CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711           3 NSFKSTEEEKLKIISTLRQET-----KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus         3 E~~~Lt~~Er~~l~~~~~~~~-----~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      .......+||.+.+..+++.+     +..+++ .+++ ++++.+++++.++++|++++|+.+-.+. .     ..+..++
T Consensus        60 ~~~~~p~~eRv~~~~~a~~~a~~~tG~~~~Ya~Nit~-~~~~m~~ra~~~~~~G~~~vmi~~~~~G-~-----~al~~l~  132 (291)
T d2d69a1          60 SFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITG-PVNIMEKRAEMVANEGGQYVMIDIVVAG-W-----SALQYMR  132 (291)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCS-SHHHHHHHHHHHHHHTCCEEEEEHHHHC-H-----HHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhCCeeEEEEeccC-CHHHHHHHHHHHHHcCCCEEEecccccc-h-----HHHHHHH
Confidence            456778899998777777665     444544 6664 7999999999999999999999743321 1     1345566


Q ss_pred             HHHccCCCCEEEEeCCCC-----cccccCHHHH---HHHH--c---CCCEEEEeeC-CHHHHHHH---Hhh---cCCCCe
Q psy9711          77 SVADNSPIPVIIYNNTFV-----TNIDISVDTL---VKLA--H---HENIRGVKDT-DNIKLANM---ANQ---TKDLNF  136 (198)
Q Consensus        77 ~i~~~~~~pi~lYn~P~~-----tg~~l~~~~l---~~L~--~---~p~i~giK~s-d~~~~~~~---~~~---~~~~~~  136 (198)
                      +.++..++||..+-.-..     ...-++.-++   .||+  +   .|++ +=|.+ +.+...++   .++   ...+-|
T Consensus       133 ~~~~~~~l~ih~Hra~~g~~~r~~~~Gis~~v~~kL~RLaGaD~ih~~~~-~Gk~~~~~~e~~~~~~~~~~~~~~~k~~~  211 (291)
T d2d69a1         133 EVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTA-VGKMAGNYEEIKRINDFLLSKWEHIRPVF  211 (291)
T ss_dssp             HHHHHHTCEEEEECTTTHHHHSCTTSEECHHHHHHHHHHHTCSEEECCCC-CSSSCCCHHHHHHHHHHHHSCCTTCCCCE
T ss_pred             HhhccccceeeecccccceeccCCCCcccHHHHHHHHHHcCCCeeecCCC-CCCCCCCHHHHHHHHHHhccccccCCCce
Confidence            666666777776643110     0122455444   4555  2   2453 45666 55444333   322   123557


Q ss_pred             EEEecChh-hHHHHh--hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC-HHHH
Q psy9711         137 SVFAGSAG-YLLSGL--LVGCAGGINALSAVL--G-------GPICELYDLAKAGK-WEEA  184 (198)
Q Consensus       137 ~v~~G~d~-~~~~~l--~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd-~~~A  184 (198)
                      .+.+|.-. ..++.+  ..|-|=.+...+.++  |       +.+++-|+++.+|. .+++
T Consensus       212 Pv~sGG~~~~~vp~~~~~~G~D~il~~GGgi~gHP~G~~aGa~A~RqA~ea~~~g~~l~e~  272 (291)
T d2d69a1         212 PVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEK  272 (291)
T ss_dssp             EEEESSCCGGGHHHHHHHHCSCCEEECHHHHHTCTTCHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             eccccccchhhhHHHHHHcCCceEEEcCccccCCCCchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            78877543 233332  467776665555552  3       56677788887774 4444

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.34  E-value=0.19  Score=38.64  Aligned_cols=79  Identities=14%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHHhc---CCeEEEeC-------CCC-c-HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           8 TEEEKLKIISTLRQET---KKTIIAGT-------YCE-S-TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~---~~pvi~gv-------~~~-~-~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +.+++.+.++.+.+++   ++|+++=+       ... + .+..+..++.+.+.|+|-+-+-.|......  .++....|
T Consensus       134 ~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~~~~--~~~~~~~~  211 (291)
T d1to3a_         134 DAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGA--RSDLLTAS  211 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSC--HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCchhh--hHHHHHHH
Confidence            3566677788887777   88876632       111 2 234567788889999999999888766655  88899999


Q ss_pred             HHHHccCCCCEEE
Q psy9711          76 ISVADNSPIPVII   88 (198)
Q Consensus        76 ~~i~~~~~~pi~l   88 (198)
                      +.+.+.++.|+++
T Consensus       212 ~~~~~~~~~p~vv  224 (291)
T d1to3a_         212 QRLNGHINMPWVI  224 (291)
T ss_dssp             HHHHHTCCSCEEE
T ss_pred             HHHhhcCCCcEEE
Confidence            9999999999877

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.17  E-value=0.059  Score=41.63  Aligned_cols=173  Identities=17%  Similarity=0.148  Sum_probs=102.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      +.......+||.+.+..+++.+     + +-..+.++ .++++.++.++.+++.|++++|+.+-. ...        .-+
T Consensus        59 ~~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~~-~G~--------~a~  128 (283)
T d1ykwa1          59 ADVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT-DEVDSLMEKHDVAVRNGANALLINALP-VGL--------SAV  128 (283)
T ss_dssp             SSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCGGGHHHHHHHHHHHTCCEEEEEHHH-HCH--------HHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhCCeeEEeeecC-CCHHHHHHHHHHHHHhCCCEEEEeccc-chH--------HHH
Confidence            3445677899988777777766     3 44455776 489999999999999999999987422 221        345


Q ss_pred             HHHHccCCCCEEEEeCCCC-----cccccCHHHHHHHHcC---CCEEE----EeeC-CHHHHHHHHh---h---cCCCCe
Q psy9711          76 ISVADNSPIPVIIYNNTFV-----TNIDISVDTLVKLAHH---ENIRG----VKDT-DNIKLANMAN---Q---TKDLNF  136 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~-----tg~~l~~~~l~~L~~~---p~i~g----iK~s-d~~~~~~~~~---~---~~~~~~  136 (198)
                      +.+++.+++||..+-.-..     ....++..++.+|.++   +.|.-    =|.+ +.+...+...   +   ...+-|
T Consensus       129 ~~l~~~~~lpi~~H~a~~g~~~r~~~~Gis~~vl~KL~RLaGaD~ih~~~~gg~~~~~~e~~~~~~~~~~~~~~~~k~~~  208 (283)
T d1ykwa1         129 RMLSNYTQVPLIGHFPFIASFSRMEKYGIHSKVMTKLQRLAGLDAVIMPGFGDRVMTPEEEVLENVIECTKPMGRIKPCL  208 (283)
T ss_dssp             HHHHHHCSSCEEEECTTTHHHHCSTTSEECHHHHHHHHHHHTCSEEEEECSSTTSSSCHHHHHHHHHHHHSCCTTCCCCE
T ss_pred             HHHHhhcCCCeEeeeccceeeccCcCCCccHHHHHHHHHHcCCCceeecCCcccccCchHHHHHHHHHhcCcccccCCce
Confidence            5667667899998753110     1123566666666542   22221    1122 3333333221   1   124568


Q ss_pred             EEEecChh-hHHHHh--hcCC-CeEEecccccc--h-------HHHHHHHHHHHcCC-HHHH
Q psy9711         137 SVFAGSAG-YLLSGL--LVGC-AGGINALSAVL--G-------GPICELYDLAKAGK-WEEA  184 (198)
Q Consensus       137 ~v~~G~d~-~~~~~l--~~G~-~G~is~~~n~~--P-------~~~~~l~~~~~~gd-~~~A  184 (198)
                      .+.+|.-. ..++.+  ..|- |=.+...+.++  |       +.+++=|+++.+|. .+++
T Consensus       209 Pv~sGG~~~~~vp~~~~~~G~~Dvil~aGGGi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~  270 (283)
T d1ykwa1         209 PVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIEQGISIETW  270 (283)
T ss_dssp             EEEECSBCTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             eeccCCcchhhhHHHHHhcCCceEEEecCcccccCCCchHHHHHHHHHHHHHHHcCCCHHHH
Confidence            88877543 233332  4674 65554444443  2       67778888888884 4444

>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.05  E-value=0.13  Score=38.98  Aligned_cols=94  Identities=13%  Similarity=0.102  Sum_probs=69.6

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCC---CEEEEcCCCCcCCCC---------CHHHHHHHHHHHHccCCCCEEE--
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGA---NAALILCPYYFQKKM---------TEDLIYEHFISVADNSPIPVII--   88 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Ga---d~v~~~~P~y~~~~~---------~~~~i~~y~~~i~~~~~~pi~l--   88 (198)
                      |.-||+| ++-.|.+.+++.|+..++.|.   +...+.-..|+++++         ..++..++++.+-+..++|++-  
T Consensus         2 rllvIaGPCsies~e~~~~~A~~lk~~~~~~~~~~~i~r~~~~k~~RTs~~~f~g~G~~~~l~~l~~~~~~~glpi~tEv   81 (263)
T d2a21a1           2 KFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDI   81 (263)
T ss_dssp             CEEEEEECSBCCCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred             ceEEEecCCcCCCHHHHHHHHHHHHHHHHHhCcCceEEeccccCCCCCCccccCCCCchhHHHHHHHHHHhhCCceeeee
Confidence            3457888 677788889999998888775   345455455555421         2478999999999999999973  


Q ss_pred             ---------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          89 ---------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        89 ---------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                     ..+|.++  .-+.+.+...++....|++|-.
T Consensus        82 ~~~~~~~~~~d~vd~~qIGAr~--~~~~~ll~~a~~~~~pV~~K~g  125 (263)
T d2a21a1          82 HESWQAEPVAEVADIIQIPAFL--CRQTDLLLAAAKTGRAVNVKKG  125 (263)
T ss_dssp             SSGGGHHHHHTTCSEEEECGGG--TTCHHHHHHHHTTTSEEEEECC
T ss_pred             ccchhhhhhhhhceeeeehhhh--ccChHhHhhhhccCCccccccc
Confidence                           4556654  3457777777789999999998

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.00  E-value=0.84  Score=34.12  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +|.+.-.++++.+.+...+|++.=..-+..-.  .-+..+.++++|+|++++.-=.       .|+. +-|...++..++
T Consensus        63 ~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP-------~eE~-~~~~~~~~~~gl  134 (248)
T d1geqa_          63 FKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLP-------VFHA-KEFTEIAREEGI  134 (248)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC-------GGGH-HHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCc-------HHHH-HHHHhhccccCc
Confidence            46677777888877655889876656544322  3678899999999999996311       2222 235556667889


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc-C---------CCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH-H---------ENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLL  147 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~-~---------p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~  147 (198)
                      ..+..-.|.     -+.+-++++++ -         ..+.|.+..   +...+.+.+++..  +..+..|.+    +...
T Consensus       135 ~~I~lvaPt-----t~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t--~~Pv~vGFGI~~~e~v~  207 (248)
T d1geqa_         135 KTVFLAAPN-----TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVGFGVSKREHVV  207 (248)
T ss_dssp             EEEEEECTT-----CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEESCCCSHHHHH
T ss_pred             ceEEEeccc-----chhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc--ccceeeecccCCHHHHH
Confidence            999888885     35677777763 3         344555655   2222222232333  345556654    2444


Q ss_pred             HHhhcCCCeEEeccc
Q psy9711         148 SGLLVGCAGGINALS  162 (198)
Q Consensus       148 ~~l~~G~~G~is~~~  162 (198)
                      ..+..|+||++-|.+
T Consensus       208 ~~~~~~ADGvIVGSa  222 (248)
T d1geqa_         208 SLLKEGANGVVVGSA  222 (248)
T ss_dssp             HHHHTTCSEEEECHH
T ss_pred             HHHhcCCCEEEECHH
Confidence            556789999999975

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=93.83  E-value=0.96  Score=34.24  Aligned_cols=139  Identities=13%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +|.+.-.++++.+.+...+|++.=..-+..-.  .-+.++.+.++|+|++++.--.+       ++-.. |...++..++
T Consensus        74 ~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~-------ee~~~-~~~~~~~~gl  145 (271)
T d1ujpa_          74 MSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPP-------DEDPG-LVRLAQEIGL  145 (271)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCG-------GGCHH-HHHHHHHHTC
T ss_pred             cchhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEeccchhh-------hhHHH-HHHHhhcccc
Confidence            56777788888887666888877666554332  25678999999999999863221       22222 3455666788


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcC-CCEE---------EEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHH-ENIR---------GVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLL  147 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~---------giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~  147 (198)
                      ..+..=.|.     -+.+-+.++++. ..++         |.+..   +...+.+.+++.  .+..+..|.+    +.. 
T Consensus       146 ~~I~lvsPt-----T~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~--t~~Pv~vGFGIs~~e~v-  217 (271)
T d1ujpa_         146 ETVFLLAPT-----STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR--TALPVAVGFGVSGKATA-  217 (271)
T ss_dssp             EEECEECTT-----CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTT--CCSCEEEESCCCSHHHH-
T ss_pred             ceeeccCCC-----cchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhcc--ccCCeEEeCCCCCHHHH-
Confidence            887777674     367888888853 3333         55544   333333334333  3455666654    232 


Q ss_pred             HHhhcCCCeEEeccc
Q psy9711         148 SGLLVGCAGGINALS  162 (198)
Q Consensus       148 ~~l~~G~~G~is~~~  162 (198)
                      .. ..|+||+|-|.+
T Consensus       218 ~~-~~~ADGvIVGSA  231 (271)
T d1ujpa_         218 AQ-AAVADGVVVGSA  231 (271)
T ss_dssp             HH-HTTSSEEEECHH
T ss_pred             HH-hCCCCEEEEcHH
Confidence            22 359999999975

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.70  E-value=1.1  Score=34.27  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHH---HhcCCCEEEEc--CCCCcCC---CCCHHHHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKA---AKAGANAALIL--CPYYFQK---KMTEDLIYEHFIS   77 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a---~~~Gad~v~~~--~P~y~~~---~~~~~~i~~y~~~   77 (198)
                      +...++..+.++...+..+.|+++.+...+.++..+.++..   .+.|+|++-+-  .|.....   ..+++.+.++.+.
T Consensus        73 n~G~~~~~~~l~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~  152 (312)
T d2b4ga1          73 NLGVDFYLSYAAQTHDYSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQK  152 (312)
T ss_dssp             BSCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcCcchhhhccHHHHHHHHHH
Confidence            34456665555544333388999999988888887777654   45688987663  4554221   1236778888899


Q ss_pred             HHccCCCCEEEEeCCCC
Q psy9711          78 VADNSPIPVIIYNNTFV   94 (198)
Q Consensus        78 i~~~~~~pi~lYn~P~~   94 (198)
                      +.+.+++|+++=-.|..
T Consensus       153 v~~~~~~pi~vKl~p~~  169 (312)
T d2b4ga1         153 VSEAYGLPFGVKMPPYF  169 (312)
T ss_dssp             HHHHHCSCEEEEECCCC
T ss_pred             hhccccccceecccccc
Confidence            98888999999887753

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.39  E-value=0.45  Score=36.36  Aligned_cols=117  Identities=9%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             HHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH---HHHccCCCCEEE--EeCCCCcccccC-HHHHH---HHH-cC-C
Q psy9711          43 TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI---SVADNSPIPVII--YNNTFVTNIDIS-VDTLV---KLA-HH-E  111 (198)
Q Consensus        43 a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~---~i~~~~~~pi~l--Yn~P~~tg~~l~-~~~l~---~L~-~~-p  111 (198)
                      .+++.++|+|+|-++-.+  .++.+++...+..+   +-|++.++|+++  |-.|...+..-+ ++.+.   +.+ +. .
T Consensus       112 v~~a~~~GadaVk~lv~~--~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~Ga  189 (291)
T d1to3a_         112 AQAVKRDGAKALKLLVLW--RSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGA  189 (291)
T ss_dssp             HHHHHHTTCCEEEEEEEE--CTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHhccCceEEEEEee--CCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCC
Confidence            466778999999776333  33323444444444   445666999998  443332222222 44443   333 33 2


Q ss_pred             CEEEEeeC-CH--------HHHHHHHhhcCCCCeEEEecCh--h----hHHHHhhcCCCeEEeccc
Q psy9711         112 NIRGVKDT-DN--------IKLANMANQTKDLNFSVFAGSA--G----YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       112 ~i~giK~s-d~--------~~~~~~~~~~~~~~~~v~~G~d--~----~~~~~l~~G~~G~is~~~  162 (198)
                      .++=+|.. +.        ..+.+.. ...+..+.+++|..  .    .+-.++..|+.|++.|=+
T Consensus       190 Di~K~~~p~~~~~~~~~~~~~~~~~~-~~~~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~  254 (291)
T d1to3a_         190 DLYKVEMPLYGKGARSDLLTASQRLN-GHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRA  254 (291)
T ss_dssp             SEEEECCGGGGCSCHHHHHHHHHHHH-HTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHH
T ss_pred             cEEEEecCCCchhhhHHHHHHHHHHh-hcCCCcEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChh
Confidence            44445543 22        2233333 33455677776532  2    233456789999998753

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=93.04  E-value=0.82  Score=33.34  Aligned_cols=153  Identities=13%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      |+.++..+.++...+.- +  +++|+|+--+.+   .++.+.++||+.++  +|.+      .+++.++-+    +.++|
T Consensus        47 l~~~~a~~~I~~l~~~~p~--~~vGaGTV~~~~---~~~~a~~aGa~Fiv--SP~~------~~~v~~~a~----~~~i~  109 (212)
T d1vhca_          47 FRSEAAADAIRLLRANRPD--FLIAAGTVLTAE---QVVLAKSSGADFVV--TPGL------NPKIVKLCQ----DLNFP  109 (212)
T ss_dssp             TTSTTHHHHHHHHHHHCTT--CEEEEESCCSHH---HHHHHHHHTCSEEE--CSSC------CHHHHHHHH----HTTCC
T ss_pred             CCChhHHHHHHHHHhcCCC--ceEeeeecccHH---HHHHHHhhCCcEEE--CCCC------CHHHHHHHH----hcCCC
Confidence            55566777777776654 4  677888766555   56677889999765  4543      556766644    34666


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C----HHHHHHHHhhcCCCCeEEEe--cCh-hhHHHHhhcCCCe
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAG  156 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d----~~~~~~~~~~~~~~~~~v~~--G~d-~~~~~~l~~G~~G  156 (198)
                      ++    |   |. ++|..+.+-.+ -+...+|.=  +    +..+..+. . .-+++.++.  |-+ +.+...+.+|..+
T Consensus       110 ~i----P---Gv-~TpsEi~~A~~-~G~~~vK~FPA~~~gG~~~lkal~-~-p~p~~~~~ptGGV~~~N~~~yl~~g~v~  178 (212)
T d1vhca_         110 IT----P---GV-NNPMAIEIALE-MGISAVKFFPAEASGGVKMIKALL-G-PYAQLQIMPTGGIGLHNIRDYLAIPNIV  178 (212)
T ss_dssp             EE----C---EE-CSHHHHHHHHH-TTCCEEEETTTTTTTHHHHHHHHH-T-TTTTCEEEEBSSCCTTTHHHHHTSTTBC
T ss_pred             cc----C---Cc-CCHHHHHHHHH-CCCCEEEEccccccchHHHHHHHh-c-cccCCeEEecCCCCHHHHHHHHhCCCEE
Confidence            54    3   43 45544443333 245566765  2    23344433 2 235666653  433 3567788888876


Q ss_pred             EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhch
Q psy9711         157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKP  194 (198)
Q Consensus       157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l  194 (198)
                      +..| ++++|+..      +++|||++..+.-+.+..+
T Consensus       179 ~~~G-s~l~~~~~------i~~~d~~~i~~~a~~~~~~  209 (212)
T d1vhca_         179 ACGG-SWFVEKKL------IQSNNWDEIGRLVREVIDI  209 (212)
T ss_dssp             CEEE-CGGGCHHH------HHTTCHHHHHHHHHHHHHH
T ss_pred             EEEC-hhhCCHHH------HhcCCHHHHHHHHHHHHHH
Confidence            6655 45677543      3478988876665555443

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.74  E-value=0.7  Score=34.81  Aligned_cols=139  Identities=15%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      +|.+.-.++++.+.+...+|++.=..-+..-.  ...+.+++.|+|++++.-  .  |   .|+- +-|...++..++..
T Consensus        76 ~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~--~~~~~~~~~GvdG~IipD--l--p---~eE~-~~~~~~~~~~gl~~  145 (261)
T d1rd5a_          76 TTMDAVLEMLREVTPELSCPVVLLSYYKPIMF--RSLAKMKEAGVHGLIVPD--L--P---YVAA-HSLWSEAKNNNLEL  145 (261)
T ss_dssp             CCHHHHHHHHHHHGGGCSSCEEEECCSHHHHS--CCTHHHHHTTCCEEECTT--C--B---TTTH-HHHHHHHHHTTCEE
T ss_pred             cchhhhhhhhhcccccccCceeeeeeecchhh--HHHHHHHhcCceeeeecC--c--c---HHHH-HHHHHHHhccccce
Confidence            45666666777666544777765444333221  124556889999999842  1  1   1122 34455666778888


Q ss_pred             EEEeCCCCcccccCHHHHHHHHc-CCCE---------EEEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHHHH
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAH-HENI---------RGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLLSG  149 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~-~p~i---------~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~  149 (198)
                      +..=.|.     .+.+-+.++++ -+.+         .|.+.+   +...+.+.+++..  +..+..|.+    +..-..
T Consensus       146 I~lvaPt-----t~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t--~~Pi~vGFGI~~~e~v~~~  218 (261)
T d1rd5a_         146 VLLTTPA-----IPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAVGFGISKPEHVKQI  218 (261)
T ss_dssp             CEEECTT-----SCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEEESCCCSHHHHHHH
T ss_pred             EEEeccC-----CchhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc--CCCeEEEcCCCCHHHHHHH
Confidence            8877774     46777888774 3333         333443   2233333333333  455666654    234444


Q ss_pred             hhcCCCeEEeccc
Q psy9711         150 LLVGCAGGINALS  162 (198)
Q Consensus       150 l~~G~~G~is~~~  162 (198)
                      ...|+||++-|.+
T Consensus       219 ~~~gaDGvIVGSa  231 (261)
T d1rd5a_         219 AQWGADGVIIGSA  231 (261)
T ss_dssp             HHTTCSEEEECHH
T ss_pred             HhcCCCEEEECHH
Confidence            5669999999974

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=92.01  E-value=1.8  Score=32.67  Aligned_cols=166  Identities=8%  Similarity=0.057  Sum_probs=100.7

Q ss_pred             CHHHHHH-HHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcC-CCEEE--EcCCCCcCC---CCCHHHHHHHHHHHH
Q psy9711           8 TEEEKLK-IISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAG-ANAAL--ILCPYYFQK---KMTEDLIYEHFISVA   79 (198)
Q Consensus         8 t~~Er~~-l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~G-ad~v~--~~~P~y~~~---~~~~~~i~~y~~~i~   79 (198)
                      ..++..+ +.+...+.. ..||++.++..+..+-.+.++..++++ +|++-  +..|.....   ..+++.+.+..+.+.
T Consensus        75 g~~~~~~~~~~~~~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~  154 (311)
T d1juba_          75 GFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVF  154 (311)
T ss_dssp             CHHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHhhhhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhh
Confidence            3344433 344444444 889999999999999899999988886 77753  345554211   123788899999999


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHcC---CCEEEEee----------------------C----CH------HHH
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHH---ENIRGVKD----------------------T----DN------IKL  124 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~---p~i~giK~----------------------s----d~------~~~  124 (198)
                      ..++.|+++=-.|...  .-..+.+.+.+..   ..+..+..                      +    .+      ..+
T Consensus       155 ~~~~~pv~vKl~p~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i  232 (311)
T d1juba_         155 TFFTKPLGVKLPPYFD--LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANV  232 (311)
T ss_dssp             TTCCSCEEEEECCCCS--HHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHH
T ss_pred             cccccceeecccccch--hhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHH
Confidence            9999999998877532  1123334444421   22222210                      0    00      112


Q ss_pred             HHHHhhcCCCCeEEEecC----hhhHHHHhhcCCCeEEeccccc--chHHHHHHHHHH
Q psy9711         125 ANMANQTKDLNFSVFAGS----AGYLLSGLLVGCAGGINALSAV--LGGPICELYDLA  176 (198)
Q Consensus       125 ~~~~~~~~~~~~~v~~G~----d~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~~  176 (198)
                      .++. +..++++.|....    .......+.+|++.+..+++.+  -|..+.++.+.+
T Consensus       233 ~~i~-~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L  289 (311)
T d1juba_         233 RAFY-TRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKEL  289 (311)
T ss_dssp             HHHH-TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHH
T ss_pred             HHHH-HhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHHHH
Confidence            2222 3456777766432    2356788999999988777754  377776665543

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.17  E-value=0.52  Score=35.39  Aligned_cols=52  Identities=17%  Similarity=0.128  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeCCC--------CcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGTYC--------ESTRATIDLTQKAAKAGANAALIL   57 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~--------~~~~~~i~~a~~a~~~Gad~v~~~   57 (198)
                      ..++.++|+++++.+.+. +..|+.-+|.        .+.++.+++++..-++||+.|++-
T Consensus       109 ~~i~~~~~~~~I~~~~~~-G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiE  168 (251)
T d1qwga_         109 SDISLEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIE  168 (251)
T ss_dssp             SCCCHHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             cCCCHHHHHHHHHHHHhC-CCEEeecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEee
Confidence            468999999999999887 6666665553        346888999999999999999995

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=90.91  E-value=0.13  Score=38.54  Aligned_cols=57  Identities=14%  Similarity=0.085  Sum_probs=38.9

Q ss_pred             HHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711          15 IISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus        15 l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      .++..++..++|||+  |+|.  ..    .+..|.++|+|+|++-.-.-...+  +..+-+-|+.-.
T Consensus       168 ~l~~i~~~~~vPvIvDAGIG~--pS----dAa~AMElG~daVLvNTAIA~a~d--Pv~MA~A~~~Av  226 (251)
T d1xm3a_         168 NLSFIIEQAKVPVIVDAGIGS--PK----DAAYAMELGADGVLLNTAVSGADD--PVKMARAMKLAV  226 (251)
T ss_dssp             HHHHHHHHCSSCBEEESCCCS--HH----HHHHHHHTTCSEEEESHHHHTSSS--HHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccEEEecCCCC--HH----HHHHHHHccCCEEEechhhhcCCC--HHHHHHHHHHHH
Confidence            456667777999998  5565  33    356788999999999766544443  666666665433

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.96  Score=33.31  Aligned_cols=103  Identities=13%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHHHHHhc---CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711           6 KSTEEEKLKIISTLRQET---KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      .|+..=.-++++.+.+++   +.-+++..++ .+.++..+..+...+.++||+++.++.-   .  .+   ..... +..
T Consensus         9 ~l~~~~~~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~~~vdgiIl~~~~~---~--~~---~~~~~-~~~   79 (271)
T d1jyea_           9 SLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLD---D--QD---AIAVE-AAC   79 (271)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC---H--HH---HHHHH-HHT
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeccccC---c--hh---HHHHH-HHh
Confidence            345555556666666666   7777776544 5667777888888888999999876431   1  22   22233 345


Q ss_pred             CCCCEEEEeCCCCccc---ccCH-----HHHHHHHc--CCCEEEEe
Q psy9711          82 SPIPVIIYNNTFVTNI---DISV-----DTLVKLAH--HENIRGVK  117 (198)
Q Consensus        82 ~~~pi~lYn~P~~tg~---~l~~-----~~l~~L~~--~p~i~giK  117 (198)
                      .++|+++.|.+...+.   ..+-     ....+|.+  +.+|.-+-
T Consensus        80 ~~iPvV~~d~~~~~~~~~V~~D~~~~~~~~~~~L~~~G~~~i~~i~  125 (271)
T d1jyea_          80 TNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLA  125 (271)
T ss_dssp             TTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             cCCCeeeeeccccccCCccccchhhccccceeeeeccccccccccc
Confidence            6899999998543332   2221     23344553  56776654

>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Galdieria partita [TaxId: 83374]

Probab=90.39  E-value=1.4  Score=34.30  Aligned_cols=169  Identities=8%  Similarity=-0.037  Sum_probs=96.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      ........+||.+.+..+++.+      ++-..+.+++.+.++..+.++.+++.|..++|+. ..+ ..     ..++..
T Consensus        58 ~~q~~~p~~eRv~~~~~av~~a~~eTG~~~~ya~NiT~~~~~~m~~ra~~~~~~g~~~lm~~-~~~-G~-----~~l~~l  130 (328)
T d1bwva1          58 NSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMID-LVI-GY-----TAIQTM  130 (328)
T ss_dssp             SSBTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE-GGG-CH-----HHHHHH
T ss_pred             cCCCccchHHHHHHHHHHHHHHHHHhCCeeEEEEeccCCCHHHHHHHHHHHHhcCCeEEEEc-ccc-ch-----HHHHHH
Confidence            3456678899998777777665      3455668888788999999999999999988875 332 22     133444


Q ss_pred             HHHHccCCCCEEEEeCCCC------cccccCHHHHH---HHH--c---CCCEEEEeeC-CHHHHHH---HHhh-------
Q psy9711          76 ISVADNSPIPVIIYNNTFV------TNIDISVDTLV---KLA--H---HENIRGVKDT-DNIKLAN---MANQ-------  130 (198)
Q Consensus        76 ~~i~~~~~~pi~lYn~P~~------tg~~l~~~~l~---~L~--~---~p~i~giK~s-d~~~~~~---~~~~-------  130 (198)
                      ++.++..++|+-. +....      ....++..++.   ||+  +   .|++ +=|.+ +......   .+..       
T Consensus       131 a~~~~~~~l~iH~-H~Ag~g~~t~~~~~Gis~~vl~KL~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~l~~~~~e~~~  208 (328)
T d1bwva1         131 AKWARDNDMILHL-HRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTV-VGKLEGDPIITRGFYKTLLLPKLERNL  208 (328)
T ss_dssp             HHHHHHTTCEEEE-ECTTTHHHHSCTTSEECHHHHHHHHHHHTCSEEECCCS-SSSSCCCHHHHHHHHHHHHCSEECCBT
T ss_pred             HHHhhhcCeeecc-cccccccccCCCCCCcCHHHHHHHHHHcCCCccccCcc-ccCcCCCHHHHHHHHHHHhhcccccch
Confidence            4444444454433 22111      12235555554   555  2   2555 44665 4433322   2211       


Q ss_pred             -----------cCCCCeEEEecChh-hHHHH-h-hcCCCeEEecccccc--h-------HHHHHHHHHHHcC
Q psy9711         131 -----------TKDLNFSVFAGSAG-YLLSG-L-LVGCAGGINALSAVL--G-------GPICELYDLAKAG  179 (198)
Q Consensus       131 -----------~~~~~~~v~~G~d~-~~~~~-l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~g  179 (198)
                                 ...+-|.+.+|.-+ ..++. + ..|-|-.+...+.++  |       +.+++-|+++.+|
T Consensus       209 ~~~~~~~~~~~~~k~~~Pv~SgG~~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~aAGa~A~RqA~eA~~~g  280 (328)
T d1bwva1         209 QEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILA  280 (328)
T ss_dssp             TTTBCSCEECTTCCCCEEEEESSCCTTSHHHHHHHHCSSCEEECSHHHHTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcccccccccCCCcceecCCCCcHhHHHHHHHHhCCeEEEecCcccccCCCcccchHHHHHHHHHHHHHh
Confidence                       01245778777543 23333 2 467776665555443  2       5666777776555

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.6  Score=34.83  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      ..+++.+.+++   +..++. ++..+.++.++.++.+.+.|+|++++.|+..       +..-..++.+ ...++||+.+
T Consensus        17 ~~~~~g~~~aa~~~G~~~i~-~~~~d~~~q~~~i~~li~~~vDgiIi~~~~~-------~~~~~~~~~a-~~~giPVV~~   87 (305)
T d8abpa_          17 QTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDP-------KLGSAIVAKA-RGYDMKVIAV   87 (305)
T ss_dssp             HHHHHHHHHHHHHHTEEEEE-EECCSHHHHHHHHHHHHHTTCCEEEEECSCG-------GGHHHHHHHH-HHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EcCCCHHHHHHHHHHHHHcCCCEEEEccccc-------cccHHHHHHH-HhcCCCEEEE
Confidence            33444444443   555533 3445778889999999999999999998742       2222333333 4579999999


Q ss_pred             eCC
Q psy9711          90 NNT   92 (198)
Q Consensus        90 n~P   92 (198)
                      |.+
T Consensus        88 d~~   90 (305)
T d8abpa_          88 DDQ   90 (305)
T ss_dssp             SSC
T ss_pred             cCc
Confidence            853

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.06  E-value=3.2  Score=32.00  Aligned_cols=141  Identities=16%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PI   84 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~   84 (198)
                      .++++|+.+.++.+.+. +.++-+.++-+  .+..++++...+.|+|.+++-.-.-     ..+.+.+..+.+-+.. ++
T Consensus        69 ~~~~e~~~~~i~~vk~~-~~~v~~~vgv~--~~~~e~~~~li~agvd~ivId~A~G-----~~~~~~~~ik~ik~~~~~~  140 (330)
T d1vrda1          69 NLTPDEQARQVSIVKKT-RLLVGAAVGTS--PETMERVEKLVKAGVDVIVIDTAHG-----HSRRVIETLEMIKADYPDL  140 (330)
T ss_dssp             SSCHHHHHHHHHHHHTC-CBCCEEEECSS--TTHHHHHHHHHHTTCSEEEECCSCC-----SSHHHHHHHHHHHHHCTTS
T ss_pred             ccchhhhHHHHHHHhhh-ccEEEEEEecC--HHHHHHHHHHHHCCCCEEEEecCCC-----CchhHHHHHHHHHHhCCCC
Confidence            35788888888777554 44444334322  3456788888899999888753321     1445555555554444 68


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------CHH---------HHHHHH---hhcCCCCeEEE-ec---C
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------DNI---------KLANMA---NQTKDLNFSVF-AG---S  142 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------d~~---------~~~~~~---~~~~~~~~~v~-~G---~  142 (198)
                      ||+.-|.       .+.+...+|.+. ..-++|..      ...         ++..+.   .....-+..|. .|   .
T Consensus       141 ~viaGnV-------~t~~~a~~l~~~-GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~  212 (330)
T d1vrda1         141 PVVAGNV-------ATPEGTEALIKA-GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRY  212 (330)
T ss_dssp             CEEEEEE-------CSHHHHHHHHHT-TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCS
T ss_pred             CEEeech-------hHHHHHHHHHHc-CCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCccc
Confidence            9998774       467888888765 35666653      111         111111   11112234444 33   2


Q ss_pred             hhhHHHHhhcCCCeEEeccc
Q psy9711         143 AGYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       143 d~~~~~~l~~G~~G~is~~~  162 (198)
                      ...+..++.+|++|++.|.-
T Consensus       213 ~gdiakAla~GAd~Vm~Gs~  232 (330)
T d1vrda1         213 SGDIVKALAAGAESVMVGSI  232 (330)
T ss_dssp             HHHHHHHHHTTCSEEEESHH
T ss_pred             CCchheeeeccCceeeecch
Confidence            24688999999999997753

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=2.6  Score=30.51  Aligned_cols=154  Identities=18%  Similarity=0.181  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711           7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP   85 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p   85 (198)
                      |+.++..+.++...++- +  +++|+|+-.+.+.+   +.+.++||+.++.  |.+      ..++.+|-+    +.++|
T Consensus        48 l~tp~a~~~I~~l~~~~p~--~~vGaGTV~~~~~~---~~a~~aGa~FivS--P~~------~~~v~~~a~----~~~i~  110 (213)
T d1wbha1          48 LRTECAVDAIRAIAKEVPE--AIVGAGTVLNPQQL---AEVTEAGAQFAIS--PGL------TEPLLKAAT----EGTIP  110 (213)
T ss_dssp             SCSTTHHHHHHHHHHHCTT--SEEEEESCCSHHHH---HHHHHHTCSCEEE--SSC------CHHHHHHHH----HSSSC
T ss_pred             CCChhHHHHHHHHHHHCCC--CeeeccccccHHHH---HHHHHCCCcEEEC--CCC------CHHHHHHHH----hcCCC
Confidence            45566777888877765 5  56787776665554   6677889997664  442      566766644    34566


Q ss_pred             EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEEe--cCh-hhHHHHhhcCCCeE
Q psy9711          86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAGG  157 (198)
Q Consensus        86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~~--G~d-~~~~~~l~~G~~G~  157 (198)
                      ++       .|. +++..+.+-.+ -+...+|.=     ....+.+.++. .-++..++.  |-+ ..+...+..|..++
T Consensus       111 ~i-------PGv-~TpsEi~~A~~-~G~~~vKlFPA~~~Gg~~~lkal~~-p~p~~~~~ptGGV~~~n~~~yl~~g~v~~  180 (213)
T d1wbha1         111 LI-------PGI-STVSELMLGMD-YGLKEFKFFPAEANGGVKALQAIAG-PFSQVRFCPTGGISPANYRDYLALKSVLC  180 (213)
T ss_dssp             EE-------EEE-SSHHHHHHHHH-TTCCEEEETTTTTTTHHHHHHHHHT-TCTTCEEEEBSSCCTTTHHHHHTSTTBSC
T ss_pred             cc-------CCc-CCHHHHHHHHH-CCCCEEEeccchhcChHHHHHHhcC-cccCCceeeeCCCCHHHHHHHHhCCCEEE
Confidence            54       343 44444443322 356667775     22334333423 235666653  333 35678888998877


Q ss_pred             EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhch
Q psy9711         158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKP  194 (198)
Q Consensus       158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l  194 (198)
                      ..| +.++|+..      +++|||++-.+.-+.+...
T Consensus       181 ~~G-s~l~~~~~------i~~~d~~~i~~~a~~~v~~  210 (213)
T d1wbha1         181 IGG-SWLVPADA------LEAGDYDRITKLAREAVEG  210 (213)
T ss_dssp             EEE-GGGSCHHH------HHHTCHHHHHHHHHHHHHH
T ss_pred             EEC-hhhCChhh------hhcCCHHHHHHHHHHHHHH
Confidence            655 45666533      3458888776665555443

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=89.63  E-value=3  Score=31.00  Aligned_cols=107  Identities=20%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-c-CCCEEEEeeC
Q psy9711          42 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H-HENIRGVKDT  119 (198)
Q Consensus        42 ~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~-~p~i~giK~s  119 (198)
                      ++..|..+|||+++++.-..   +  ++++.++++ .|...++-+++=-        -+.+.+.+.. . .++++||=.-
T Consensus       115 QI~ea~~~GADaiLLI~~~L---~--~~~l~~l~~-~a~~lgle~LvEv--------h~~~El~~al~~~~a~iiGINnR  180 (251)
T d1i4na_         115 QVKLASSVGADAILIIARIL---T--AEQIKEIYE-AAEELGMDSLVEV--------HSREDLEKVFSVIRPKIIGINTR  180 (251)
T ss_dssp             HHHHHHHTTCSEEEEEGGGS---C--HHHHHHHHH-HHHTTTCEEEEEE--------CSHHHHHHHHTTCCCSEEEEECB
T ss_pred             HHHHHHhhccceEEeecccc---c--HHHHHHHHH-HHHHhCCeeeccc--------CCHHHHHHHhcccccceeeeeec
Confidence            55667789999999997663   3  666655554 5667888776632        1356677765 3 4789999654


Q ss_pred             -------CHHHHHHHHhhcCCCCeEEEe--cChh-hHHHHhhcCCCeEEecccc
Q psy9711         120 -------DNIKLANMANQTKDLNFSVFA--GSAG-YLLSGLLVGCAGGINALSA  163 (198)
Q Consensus       120 -------d~~~~~~~~~~~~~~~~~v~~--G~d~-~~~~~l~~G~~G~is~~~n  163 (198)
                             |+.+..++.. ..+++..+.+  |..+ --+..+..|++|++-|.+-
T Consensus       181 dL~t~~vd~~~~~~L~~-~ip~~~~~IaESGI~~~~d~~~l~~G~davLIG~sL  233 (251)
T d1i4na_         181 DLDTFEIKKNVLWELLP-LVPDDTVVVAESGIKDPRELKDLRGKVNAVLVGTSI  233 (251)
T ss_dssp             CTTTCCBCTTHHHHHGG-GSCTTSEEEEESCCCCGGGHHHHTTTCSEEEECHHH
T ss_pred             chhccchhhhHHHHHHh-hCCCCCEEEEcCCCCCHHHHHHHHhCCCEEEEChHH
Confidence                   5677777774 4455544432  4221 1123456799999988763

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=1.6  Score=31.67  Aligned_cols=77  Identities=16%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ++..-..++++-+-+++   +..+++..+..+.+...+..+.+...++|++++.++..      ++..   .....+..+
T Consensus        10 ~~~pf~~~~~~gi~~~~~~~gy~~~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~---~~~~~~~~~   80 (282)
T d1dbqa_          10 SEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY------PEPL---LAMLEEYRH   80 (282)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCC------CHHH---HHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccc------cchh---hhhHHhhcC
Confidence            34444556666666655   77787877888899999999999999999999987742      2222   222333458


Q ss_pred             CCEEEEeCC
Q psy9711          84 IPVIIYNNT   92 (198)
Q Consensus        84 ~pi~lYn~P   92 (198)
                      +|+++++..
T Consensus        81 iPvV~~~~~   89 (282)
T d1dbqa_          81 IPMVVMDWG   89 (282)
T ss_dssp             SCEEEEECS
T ss_pred             CCceEEEec
Confidence            999999863

>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=89.27  E-value=2.5  Score=30.22  Aligned_cols=101  Identities=14%  Similarity=0.076  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC----------CCCcCCCC--CHHHHHHH
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC----------PYYFQKKM--TEDLIYEH   74 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~----------P~y~~~~~--~~~~i~~y   74 (198)
                      .|.+|+.+-++...+.-+.-++.|+.+.-      -|+.++++|+|++.+..          +.-..+++  +.+...++
T Consensus         3 ~tr~e~~~~lr~~l~~~~~l~~~g~~d~l------sAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~   76 (197)
T d2p10a1           3 PTRSELVDRFQKKIRAGEPIIGGGAGTGL------SAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDM   76 (197)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSHH------HHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEcccccHH------HHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHH
Confidence            57788888777777663444556887642      35677899999998632          21111111  14566778


Q ss_pred             HHHHHccC-CCCEEEEeCCCCcccccCHHH-HHHHHcCCCEEEE
Q psy9711          75 FISVADNS-PIPVIIYNNTFVTNIDISVDT-LVKLAHHENIRGV  116 (198)
Q Consensus        75 ~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~-l~~L~~~p~i~gi  116 (198)
                      -++|..++ ++||+. +.- -.|..+.... +.++. --.+.||
T Consensus        77 a~~i~~~v~~iPvia-D~d-G~g~~~nv~rtv~~~~-~aG~agI  117 (197)
T d2p10a1          77 AREVLPVVRHTPVLA-GVN-GTDPFMVMSTFLRELK-EIGFAGV  117 (197)
T ss_dssp             HHHHGGGCSSSCEEE-EEC-TTCTTCCHHHHHHHHH-HHTCCEE
T ss_pred             HHHHHHhcccCceEE-ecC-CCCcchhHHHHHHHHH-HcCCeEE
Confidence            88888776 799998 654 3565666654 34443 2345555

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=88.61  E-value=0.58  Score=35.16  Aligned_cols=62  Identities=19%  Similarity=0.236  Sum_probs=46.9

Q ss_pred             CCeEEEeCCCCcH-------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          24 KKTIIAGTYCEST-------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        24 ~~pvi~gv~~~~~-------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ++.||+=+-..|.       .+..++++.+++.||+++.++. |.||..+  .    ++.+.+.+++++||+-=|+
T Consensus        45 ~~~vIAEiKr~SPS~G~i~~~dp~~~A~~y~~~GA~aiSVLTe~~~F~Gs--~----~dl~~v~~~~~iPvLrKDF  114 (254)
T d1vc4a_          45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGGS--L----LDLKRVREAVDLPLLRKDF  114 (254)
T ss_dssp             SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEECCCSSSCCC--H----HHHHHHHHHCCSCEEEESC
T ss_pred             CCeEEEEeeecCCCCCccccCCHHHHHHHHHhcCCceEEEEcCccccccc--H----HHHHHHHHHcCCCcccCCc
Confidence            4567775533332       3678899999999999999996 7788776  5    4557888888999987765

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=88.21  E-value=2.6  Score=31.16  Aligned_cols=102  Identities=8%  Similarity=0.037  Sum_probs=70.6

Q ss_pred             eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--ccCHH
Q psy9711          26 TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DISVD  102 (198)
Q Consensus        26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l~~~  102 (198)
                      .|.+-+.+.+.++.++.++.+...|+|.+=+---++.... +.+++.+..+.+-+.+ ++|+++-.-+..-|-  ..+.+
T Consensus        17 kIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~-~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~   95 (252)
T d1gqna_          17 KIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIA-STQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQ   95 (252)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTT-CHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHH
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccC-CHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHH
Confidence            3556778889999999999999999999999877775432 4889999999888777 599998776544333  35665


Q ss_pred             HHHHHH----c--CCCEEEEeeC-CHHHHHHHH
Q psy9711         103 TLVKLA----H--HENIRGVKDT-DNIKLANMA  128 (198)
Q Consensus       103 ~l~~L~----~--~p~i~giK~s-d~~~~~~~~  128 (198)
                      ...+|.    +  .+..+=|=.. +-..+.+++
T Consensus        96 ~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li  128 (252)
T d1gqna_          96 HYLTLNRAAIDSGLVDMIDLELFTGDADVKATV  128 (252)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCceEeccccccHHHHHHHH
Confidence            544443    3  2455555444 444444443

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=88.19  E-value=2  Score=31.08  Aligned_cols=118  Identities=15%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCE-EEEeCCCCcccccCHHHHHHHHc
Q psy9711          32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPV-IIYNNTFVTNIDISVDTLVKLAH  109 (198)
Q Consensus        32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi-~lYn~P~~tg~~l~~~~l~~L~~  109 (198)
                      |..+++.-+..++.|.+.|||-+=++.|+..-.+.+.+.+.+-.+.+.+.++ .++ +|-.    ++ .|+.+.+.++++
T Consensus        65 G~~~~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlE----t~-~L~~~ei~~a~~  139 (211)
T d1ub3a_          65 GYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILE----TG-YFSPEEIARLAE  139 (211)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECC----GG-GSCHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEec----cc-cCCHHHHHHHHH
Confidence            5667888899999999999999999988754332358888888999988885 332 3333    33 468888877774


Q ss_pred             ---CCCEEEEeeC--------CHHHHHHHHhhcCCCC--eEEEecChh--hHHHHhhcCCC
Q psy9711         110 ---HENIRGVKDT--------DNIKLANMANQTKDLN--FSVFAGSAG--YLLSGLLVGCA  155 (198)
Q Consensus       110 ---~p~i~giK~s--------d~~~~~~~~~~~~~~~--~~v~~G~d~--~~~~~l~~G~~  155 (198)
                         .-....||-|        .++.++.+. +..+++  +..-.|--+  .....+.+|++
T Consensus       140 ~a~~aGadfiKTSTG~~~~gat~e~v~~m~-~~~~~~~~iKasGGIrt~~~a~~~l~aGa~  199 (211)
T d1ub3a_         140 AAIRGGADFLKTSTGFGPRGASLEDVALLV-RVAQGRAQVKAAGGIRDRETALRMLKAGAS  199 (211)
T ss_dssp             HHHHHTCSEEECCCSSSSCCCCHHHHHHHH-HHHTTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred             HHHHhccceEEecCCCCCCCCCHHHHHHHH-HHhCCCceEECcCCCCCHHHHHHHHHHhhh
Confidence               2478899997        344444444 333444  444444332  35566788887

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]

Probab=88.16  E-value=1.8  Score=31.55  Aligned_cols=105  Identities=10%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++=.+.++.+.+..  ++.+++=+ +.-+.++++++++..++.+..  .+--|.-      +++ .+-++.|.+++++
T Consensus        44 ~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~------~~~-~~~~~~l~~~~~i  114 (243)
T d1nu5a1          44 TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVE--LVEQPVP------RAN-FGALRRLTEQNGV  114 (243)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCC--EEECCSC------TTC-HHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHHHHhcchhhh--hhhhhhh------hcc-ccccccchhcccc
Confidence            5566667777777777  77777754 445789999999999888755  3344431      222 3567888888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~  127 (198)
                      ||..=-      ...+++.+.++.+.  -+++-+|-+   .+....++
T Consensus       115 pIa~gE------~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i  156 (243)
T d1nu5a1         115 AILADE------SLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKV  156 (243)
T ss_dssp             EEEEST------TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred             cccccc------ccccchhhhhccccccccccccccccccchHHHHHH
Confidence            988632      24567778888853  578888876   44444443

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=88.10  E-value=0.59  Score=35.49  Aligned_cols=103  Identities=8%  Similarity=0.057  Sum_probs=66.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCC-------c-C--CCCCHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYY-------F-Q--KKMTEDLIY   72 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y-------~-~--~~~~~~~i~   72 (198)
                      -.||.+|..+.++.++..+.+||++=.  |-.+..++.+.++...++|+.++.+---.+       . +  .-.+.++..
T Consensus        57 ~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~  136 (275)
T d1s2wa_          57 NEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFA  136 (275)
T ss_dssp             ----CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHH
T ss_pred             CccchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHH
Confidence            368899999999999887799999843  445788999999999999999999985322       1 1  112477777


Q ss_pred             HHHHHHHccC-CCCEEEE-eCCC-CcccccCHHHHHHHH
Q psy9711          73 EHFISVADNS-PIPVIIY-NNTF-VTNIDISVDTLVKLA  108 (198)
Q Consensus        73 ~y~~~i~~~~-~~pi~lY-n~P~-~tg~~l~~~~l~~L~  108 (198)
                      .-.+...++- +-++++- -.-. ..+..+ .+.++|..
T Consensus       137 ~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl-~eai~R~~  174 (275)
T d1s2wa_         137 LKIKACKDSQTDPDFCIVARVEAFIAGWGL-DEALKRAE  174 (275)
T ss_dssp             HHHHHHHHHCSSTTCEEEEEECTTTTTCCH-HHHHHHHH
T ss_pred             HHHHhhhhhccCcceeEEecchhhhhcCCH-HHHHHHHH
Confidence            7777766643 4554432 2111 122223 36777775

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=87.11  E-value=4.1  Score=29.50  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      |+...-.+.++...+.-+ -+.+|+|+-.+.+   +++.+.++|++.++  .|.+      .+++.++-    ...++|+
T Consensus        50 l~~p~a~~~i~~l~~~~p-~~~vGaGTV~~~~---~~~~a~~aGa~Fiv--sP~~------~~~v~~~a----~~~~i~~  113 (216)
T d1mxsa_          50 LRSQHGLKAIQVLREQRP-ELCVGAGTVLDRS---MFAAVEAAGAQFVV--TPGI------TEDILEAG----VDSEIPL  113 (216)
T ss_dssp             SSSTHHHHHHHHHHHHCT-TSEEEEECCCSHH---HHHHHHHHTCSSEE--CSSC------CHHHHHHH----HHCSSCE
T ss_pred             CCChhHHHHHHHHHHhCC-CcceeeeeeecHH---HHHHHHhCCCCEEE--CCCC------cHHHHHHH----HhcCCCc
Confidence            445566777777776642 2667877766654   46677788998665  3542      56677654    3456665


Q ss_pred             EEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C---HHHHHHHHhhcCCCCeEEEe--cCh-hhHHHHhhcCCCeEE
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D---NIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAGGI  158 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d---~~~~~~~~~~~~~~~~~v~~--G~d-~~~~~~l~~G~~G~i  158 (198)
                      +    |   |. ++|..+.+-.+ -+...+|.=  +   ...+.+.++. .-+++.++.  |-+ ..+...+..|+..++
T Consensus       114 i----P---Gv-~TpsEi~~A~~-~G~~~vKlFPA~~~~g~~~ikal~~-p~p~~~fiptGGV~~~n~~~yl~~~~v~av  183 (216)
T d1mxsa_         114 L----P---GI-STPSEIMMGYA-LGYRRFKLFPAEISGGVAAIKAFGG-PFGDIRFCPTGGVNPANVRNYMALPNVMCV  183 (216)
T ss_dssp             E----C---EE-CSHHHHHHHHT-TTCCEEEETTHHHHTHHHHHHHHHT-TTTTCEEEEBSSCCTTTHHHHHHSTTBCCE
T ss_pred             c----C---Cc-CCHHHHHHHHH-CCCCEEEeccccccccHHHHHHHhc-ccccCceeccCCCCHHHHHHHHhcCCeEEE
Confidence            4    3   43 45554544433 355667775  2   2223333322 235666553  433 356677888888776


Q ss_pred             ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711         159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV  196 (198)
Q Consensus       159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~  196 (198)
                      .+ ++++|+.      .+++|||++-.+.-++...+.+
T Consensus       184 gg-s~l~~~~------~i~~~d~~~i~~~a~~~~~~i~  214 (216)
T d1mxsa_         184 GT-TWMLDSS------WIKNGDWARIEACSAEAIALLD  214 (216)
T ss_dssp             EE-CTTSCHH------HHHTTCHHHHHHHHHHHHHTCC
T ss_pred             Ec-cccCCHH------HhhcCCHHHHHHHHHHHHHHHc
Confidence            55 4567643      3457899887777666655544

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=87.00  E-value=2  Score=30.87  Aligned_cols=79  Identities=11%  Similarity=0.042  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711           7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP   83 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~   83 (198)
                      ++..=..++++-+.+++   +.-++...+..+.+...+.++.+...|+|++++.|......   .    +..+.+ ...+
T Consensus        11 ~~~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~---~----~~~~~~-~~~~   82 (271)
T d2dria_          11 LNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAV---G----NAVKMA-NQAN   82 (271)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTT---H----HHHHHH-HHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCcccccccccccch---H----HHHHHH-hhcc
Confidence            34444555666665555   77777777778888889999999999999999876542221   2    233333 3568


Q ss_pred             CCEEEEeCCC
Q psy9711          84 IPVIIYNNTF   93 (198)
Q Consensus        84 ~pi~lYn~P~   93 (198)
                      +|+++++.+.
T Consensus        83 ipvV~~~~~~   92 (271)
T d2dria_          83 IPVITLDRQA   92 (271)
T ss_dssp             CCEEEESSCC
T ss_pred             eeEEEecccc
Confidence            9999998754

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.70  E-value=1.5  Score=32.25  Aligned_cols=72  Identities=17%  Similarity=0.018  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L~  108 (198)
                      .+++.+..+.|+++|++.+.+.|+...... +.+.+.+.++.+++.   .++-+.+-|.+..+...-+.+...+|.
T Consensus        83 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~~~li  157 (271)
T d2q02a1          83 VKKTEGLLRDAQGVGARALVLCPLNDGTIV-PPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLI  157 (271)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCCSSBCC-CHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEecCCCCccc-hHHHHHHHHHHHHHHhccCCeEEEEeecCCcCcccCCHHHHHHHH
Confidence            455677778889999999998876655443 477788888877764   467777766543333334666666666

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=2.6  Score=30.79  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=53.0

Q ss_pred             CCHHHHHHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711           7 STEEEKLKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS   82 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~   82 (198)
                      ++..=..++.+-+.+++    +..+++..+..+..+.++.++.+.+.|+|++++.|..-       .....-.+.. ...
T Consensus        11 ~~~~f~~~i~~gi~~~a~~~~~~~l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~-------~~~~~~~~~~-~~~   82 (305)
T d2fvya1          11 YDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-------AAAGTVIEKA-RGQ   82 (305)
T ss_dssp             TTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-------GGHHHHHHHH-HTT
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeecccc-------cccHHHHHHH-Hhc
Confidence            34444445555554444    56677776778999999999999999999999876542       2222333333 346


Q ss_pred             CCCEEEEeCC
Q psy9711          83 PIPVIIYNNT   92 (198)
Q Consensus        83 ~~pi~lYn~P   92 (198)
                      ++|++.+|.+
T Consensus        83 ~ipvv~~~~~   92 (305)
T d2fvya1          83 NVPVVFFNKE   92 (305)
T ss_dssp             TCCEEEESSC
T ss_pred             CCceeeeeec
Confidence            8999999875

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=86.62  E-value=5.7  Score=30.71  Aligned_cols=92  Identities=20%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEE------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-------
Q psy9711          24 KKTIIAG-TYCESTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-------   89 (198)
Q Consensus        24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-------   89 (198)
                      +..+|+| ++-.|-+.+.+.++..+++|++...-      ..|+-+...  .++-+++++++.+.+++|++-=       
T Consensus        94 ~l~lIAGPC~vES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~--g~~gL~~l~~~k~~~glpvvTdV~~~~~~  171 (338)
T d1vr6a1          94 YFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGL--GEKGLEYLREAADKYGMYVVTEALGEDDL  171 (338)
T ss_dssp             EEEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCC--THHHHHHHHHHHHHHTCEEEEECSSGGGH
T ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHHhCccccccceecccccccccccc--hHHHHHHHHHHHhhcCceeEEeccchhhh
Confidence            3567888 46667788899999999999886652      345544433  4566799999999999998852       


Q ss_pred             ----------eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711          90 ----------NNTFVTNIDISVDTLVKLAHHENIRGVKDT  119 (198)
Q Consensus        90 ----------n~P~~tg~~l~~~~l~~L~~~p~i~giK~s  119 (198)
                                .+|.+.-  -..+++.++++....+-+|-.
T Consensus       172 ~~~~e~~DilQI~A~~~--~n~~LL~~~g~t~kpV~lKkG  209 (338)
T d1vr6a1         172 PKVAEYADIIQIGARNA--QNFRLLSKAGSYNKPVLLKRG  209 (338)
T ss_dssp             HHHHHHCSEEEECGGGT--TCHHHHHHHHTTCSCEEEECC
T ss_pred             hhhhceeeeEEechhhc--cCHHHHHHhhccCCcEEecCc
Confidence                      2243322  235677777777777777776

>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]

Probab=86.59  E-value=4.9  Score=30.71  Aligned_cols=126  Identities=16%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH----HHHHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc-
Q psy9711          40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE----HFISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH-  109 (198)
Q Consensus        40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~----y~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~-  109 (198)
                      ++.++...++|||++++.-|.-...+  ++...+    |++.+.+..     +.|++++..  .++..     +..+.+ 
T Consensus       186 ~~~~~~qi~aGad~i~ifDs~a~~l~--~~~f~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~  256 (343)
T d1j93a_         186 AKYIRYQADSGAQAVQIFDSWATELS--PVDFEEFSLPYLKQIVDSVKLTHPNLPLILYAS--GSGGL-----LERLPLT  256 (343)
T ss_dssp             HHHHHHHHHTTCSEEEEECGGGGGSC--HHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECS--SCTTT-----GGGGGGG
T ss_pred             HHHHHHHhccCCceEEeccHHHHHHh--hHhhhhhccHHHHHHHhhhhhcCCCCceeeecc--cccch-----hhhhhcc
Confidence            45566677899999999888755444  655544    456666543     467665543  23322     234554 


Q ss_pred             CCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhh-cCCCeEEecccccc-----hHHHH
Q psy9711         110 HENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLL-VGCAGGINALSAVL-----GGPIC  170 (198)
Q Consensus       110 ~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~-~G~~G~is~~~n~~-----P~~~~  170 (198)
                      -.+++++=.. |+....+.+    ++++.+..+.|..+            ...+. .|-.|+|.++++=+     ++-+.
T Consensus       257 ~~~~is~d~~~~l~~a~~~~----~~~~~iqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~~lGhgi~~~Tp~eNv~  332 (343)
T d1j93a_         257 GVDVVSLDWTVDMADGRRRL----GPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFA  332 (343)
T ss_dssp             CCSEEECCTTSCHHHHHHHT----CSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCCHHHHH
T ss_pred             CccccccccccchHHHHHHh----CCCeEEEeCCChHHHcCCHHHHHHHHHHHHHhcCCCCcEEECCCCCCCCCCHHHHH
Confidence            3477788666 877765443    34554443333211            11122 34467887776533     46677


Q ss_pred             HHHHHHHc
Q psy9711         171 ELYDLAKA  178 (198)
Q Consensus       171 ~l~~~~~~  178 (198)
                      .+.+++++
T Consensus       333 a~v~~vr~  340 (343)
T d1j93a_         333 HFFEIAKG  340 (343)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77776654

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative amidohydrolase LP2961
species: Lactobacillus plantarum [TaxId: 1590]

Probab=86.54  E-value=2  Score=32.36  Aligned_cols=64  Identities=11%  Similarity=0.026  Sum_probs=44.2

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY   89 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY   89 (198)
                      |.-.++.+.-...+++++.++++ ++.|+.++.+.+++-.. ..+.+.+...|+.. +..++||+++
T Consensus        89 Rf~~~a~vp~~~~~~a~~el~r~~~~~G~~Gi~~~~~~~~~-~~~dp~~~pi~~~~-~e~~lpv~~H  153 (306)
T d2f6ka1          89 QLGYLASLPIPYELDAVKTVQQALDQDGALGVTVPTNSRGL-YFGSPVLERVYQEL-DARQAIVALH  153 (306)
T ss_dssp             TEEEEECCCTTCHHHHHHHHHHHHHTSCCSEEEEESEETTE-ETTCGGGHHHHHHH-HTTTCEEEEE
T ss_pred             eEEEEeecccchhhHHHHHHHHHHhcccceEEEecCccccc-cCCCccchHHHHHH-HHcCCceEec
Confidence            55555666556788898877776 56799999886554211 12366677777555 5689999998

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.47  E-value=1.8  Score=31.06  Aligned_cols=129  Identities=16%  Similarity=0.087  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711           7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV   86 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi   86 (198)
                      |+.+...+.++.+.+.-.-.+++|+|+-.+.   +.++.+.++||+.++  +|.+      +.++.++-.+    .++|+
T Consensus        42 lr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~---~~~~~a~~aGa~fiv--sP~~------~~~v~~~~~~----~~i~~  106 (202)
T d1wa3a1          42 FTVPDADTVIKELSFLKEKGAIIGAGTVTSV---EQCRKAVESGAEFIV--SPHL------DEEISQFCKE----KGVFY  106 (202)
T ss_dssp             TTSTTHHHHHHHTHHHHHTTCEEEEESCCSH---HHHHHHHHHTCSEEE--CSSC------CHHHHHHHHH----HTCEE
T ss_pred             cCCccHHHHHHHHHHhcCCCcEEEecccccH---HHHHHHHhhcccEEe--CCCC------cHHHHHHHHh----cCCce
Confidence            4444555555554432222356677766554   456678899999875  4543      4556665443    34444


Q ss_pred             EEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C---HHHHHHHHhhcCCCCeEEEe--cCh-hhHHHHhhcCCCeEE
Q psy9711          87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D---NIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAGGI  158 (198)
Q Consensus        87 ~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d---~~~~~~~~~~~~~~~~~v~~--G~d-~~~~~~l~~G~~G~i  158 (198)
                      +       .|. .++..+.+-.+ -+...+|.-  +   +..+..+. . .-|++.++.  |-+ +.+...+..|+.++-
T Consensus       107 i-------PGv-~TpsEi~~A~~-~G~~~lK~fPa~~~G~~~lk~l~-~-p~p~i~~iptGGI~~~n~~~~l~aga~avg  175 (202)
T d1wa3a1         107 M-------PGV-MTPTELVKAMK-LGHTILKLFPGEVVGPQFVKAMK-G-PFPNVKFVPTGGVNLDNVCEWFKAGVLAVG  175 (202)
T ss_dssp             E-------CEE-CSHHHHHHHHH-TTCCEEEETTHHHHHHHHHHHHH-T-TCTTCEEEEBSSCCTTTHHHHHHHTCSCEE
T ss_pred             e-------CCc-CcHHHHHHHHH-CCCCEEEecchhhcCHHHHHHHh-C-cccCCcEEeeCCCCHHHHHHHHHCCCeEEE
Confidence            3       343 34443433332 345566665  2   23344433 2 335666653  443 356778889988776


Q ss_pred             ecc
Q psy9711         159 NAL  161 (198)
Q Consensus       159 s~~  161 (198)
                      .|.
T Consensus       176 ~Gs  178 (202)
T d1wa3a1         176 VGS  178 (202)
T ss_dssp             ECH
T ss_pred             Ech
Confidence            554

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=86.19  E-value=0.97  Score=34.65  Aligned_cols=109  Identities=7%  Similarity=0.089  Sum_probs=72.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCeEEEe--CCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCCCCHHHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQETKKTIIAG--TYCESTRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFIS   77 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~g--v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~~~~~~i~~y~~~   77 (198)
                      +..-.++--.++++.+++.+++||-+-  +|. +..+..+.++.+++.|++.+.+.+-.    |..+.        .++.
T Consensus       102 ~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~-d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a--------~~~~  172 (305)
T d1vhna_         102 ALLKDLRHFRYIVRELRKSVSGKFSVKTRLGW-EKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRA--------EWKA  172 (305)
T ss_dssp             GGGSCHHHHHHHHHHHHHHCSSEEEEEEESCS-SSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCC--------CGGG
T ss_pred             eeccCHHHHHHHhhhhhhhcccccccccccCc-ccchhhHHHHHHHHhCCcEEEechhhhhhccccch--------hhhH
Confidence            333455666678888877778888763  343 34566788999999999999998654    22221        1233


Q ss_pred             HHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711          78 VADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM  127 (198)
Q Consensus        78 i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~  127 (198)
                      |.... ++||+.      .|--.+.+...+..+..++.|+=-.     |+.-+.++
T Consensus       173 i~~~~~~ipvi~------NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i  222 (305)
T d1vhna_         173 LSVLEKRIPTFV------SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQI  222 (305)
T ss_dssp             GGGSCCSSCEEE------ESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHH
T ss_pred             HHhhhhhhhhhc------ccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhh
Confidence            33222 699875      3556788999888877788888777     66555543

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=5.2  Score=29.65  Aligned_cols=107  Identities=14%  Similarity=0.070  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC
Q psy9711          41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT  119 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s  119 (198)
                      .++..+..+|||+++++.-..   +  ++++.++++ .+...++-+++=-.        +.+.+.+-.+ -+.++||=.-
T Consensus       121 ~QI~ear~~GADavLLI~~~L---~--~~~l~~l~~-~a~~lgl~~LVEvh--------~~~El~~a~~~~a~iIGINnR  186 (254)
T d1piia2         121 YQIYLARYYQADACLLMLSVL---D--DDQYRQLAA-VAHSLEMGVLTEVS--------NEEEQERAIALGAKVVGINNR  186 (254)
T ss_dssp             HHHHHHHHTTCSEEEEETTTC---C--HHHHHHHHH-HHHHTTCEEEEEEC--------SHHHHHHHHHTTCSEEEEESE
T ss_pred             HHHHHHHhhccchhhhhHhhh---c--ccHHHHHHH-HHHHHhhhHHHhhc--------cHHHHHHHHhhcccccCcccc
Confidence            355667789999999997663   3  666655555 46778887765221        2455666555 5799999653


Q ss_pred             -------CHHHHHHHHhhcCCCC-eEEE-ecChh-hHHHHhhcCCCeEEeccc
Q psy9711         120 -------DNIKLANMANQTKDLN-FSVF-AGSAG-YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       120 -------d~~~~~~~~~~~~~~~-~~v~-~G~d~-~~~~~l~~G~~G~is~~~  162 (198)
                             |+.+..++... .+++ +.|. +|-.+ .-...+..|++|+.-|.+
T Consensus       187 nL~tf~vd~~~t~~L~~~-ip~~~~~VsESGI~~~~d~~~l~~g~davLiGes  238 (254)
T d1piia2         187 DLRDLSIDLNRTRELAPK-LGHNVTVISESGINTYAQVRELSHFANGFLIGSA  238 (254)
T ss_dssp             ETTTTEECTHHHHHHHHH-HCTTSEEEEESCCCCHHHHHHHTTTCSEEEECHH
T ss_pred             chhhhhhhhHHHHHHHHh-CCCCCEEEEcCCCCCHHHHHHHHcCCCEEEEChH
Confidence                   66777777643 3444 4443 35432 123446779999998876

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=85.89  E-value=2.5  Score=32.98  Aligned_cols=111  Identities=10%  Similarity=0.005  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHHHhc-----CCeEEE--eC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711           8 TEEEKLKIISTLRQET-----KKTIIA--GT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI   71 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~-----~~pvi~--gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i   71 (198)
                      |.+.|.+++..+++++     +-+|.+  ..         +..+.++++++++..++.|+|.+-+..+.+..+...++  
T Consensus       205 s~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~--  282 (363)
T d1vyra_         205 SVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSE--  282 (363)
T ss_dssp             SHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCH--
T ss_pred             chhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCCccCCccccH--
Confidence            5677777776666555     222311  11         24457899999999999999999999766543221133  


Q ss_pred             HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711          72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA  128 (198)
Q Consensus        72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~  128 (198)
                       .+.+.+-+.++.|++.-      | .++++...++.+-  -.+||+==.   |+....++.
T Consensus       283 -~~~~~~~~~~~~~vi~~------G-~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~  336 (363)
T d1vyra_         283 -AFRQKVRERFHGVIIGA------G-AYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  336 (363)
T ss_dssp             -HHHHHHHHHCCSEEEEE------S-SCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             -HHHHHHHHhcCceEEec------C-CCCHHHHHHHHHCCCcceehhhHHHHHCccHHHHHH
Confidence             34455555667776652      2 3579999888753  467777555   777776665

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=85.79  E-value=4.2  Score=29.43  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      +.++-.+.++.+.+..  ++.+++-. +.-+.+++++.++..++.|..  .+--|..  +.  +   .+-++.|.+++++
T Consensus        44 ~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~--~~--d---~~~~~~L~~~~~~  114 (242)
T d1muca1          44 PVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPIS--RI--N---RGGQVRLNQRTPA  114 (242)
T ss_dssp             CHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHHTTCC--CEECCBC--TT--C---HHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHHHHhhhhhHH--Hhhcchh--hh--h---hhhhhhhhhhhhh
Confidence            3455667777777776  78888765 345789999999999998765  3344541  11  1   2346778888899


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM  127 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~  127 (198)
                      ||..=.      ...++..+.++.+  ...++-+|-+   .+..+.++
T Consensus       115 pIa~~E------~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i  156 (242)
T d1muca1         115 PIMADE------SIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT  156 (242)
T ss_dssp             CEEEST------TCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred             eeeccc------ccccccchhhhhhcccccccccccccchhHHHHHHH
Confidence            987632      2356777887773  5788889876   45544443

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=85.73  E-value=0.91  Score=33.79  Aligned_cols=58  Identities=9%  Similarity=0.090  Sum_probs=44.5

Q ss_pred             HHhc-CCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711          20 RQET-KKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus        20 ~~~~-~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      ++.+ .+||++  |-...+.++.+++.+.|.+.|+.++++---.|..++  +..+.+-.+.|.
T Consensus       189 v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~--p~~~~~al~~iv  249 (251)
T d1ojxa_         189 VKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRD--ALKFARALAELV  249 (251)
T ss_dssp             HHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTT--HHHHHHHHHHHH
T ss_pred             HHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCc--HHHHHHHHHHHh
Confidence            3444 666533  344457889999999999999999999988887776  888887777664

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=85.59  E-value=2.2  Score=32.12  Aligned_cols=67  Identities=12%  Similarity=0.113  Sum_probs=49.1

Q ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711          24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT   92 (198)
Q Consensus        24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P   92 (198)
                      |...++.+.-.+.+++++..+++.+.|+.++.+.+.+-.. ..++..+...|+...+ .++||+++-.+
T Consensus       112 R~~~~~~v~~~~~~~a~~el~r~~~~g~~g~~l~~~~~~~-~~~d~~~~p~~~~~~e-~~~pv~iH~~~  178 (331)
T d2hbva1         112 RIKVLAQVPLQDLDLACKEASRAVAAGHLGIQIGNHLGDK-DLDDATLEAFLTHCAN-EDIPILVHPWD  178 (331)
T ss_dssp             TEEECBCCCTTSHHHHHHHHHHHHHHTCCCEEEESCBTTB-CTTSHHHHHHHHHHHH-TTCCEEEECCS
T ss_pred             cceeeeEeecccchhhhhHHHHhhhhcceeeeecccccCc-ccccchhhHHHHHHhc-cCCceEEecCC
Confidence            4444445555567899999999999999999886544222 2248888888888775 79999998543

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.39  E-value=5.4  Score=30.58  Aligned_cols=169  Identities=9%  Similarity=0.042  Sum_probs=88.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCC-----CEEEEcCCCCcCCCCCHHH
Q psy9711           2 SNSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGA-----NAALILCPYYFQKKMTEDL   70 (198)
Q Consensus         2 gE~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Ga-----d~v~~~~P~y~~~~~~~~~   70 (198)
                      ........+||.+.+..+++.+     +..+ .+.+++.+.++.+++++.+.+.|+     .++|+. .+...    .  
T Consensus        60 ad~~~~p~~eRv~~~~~av~~a~~eTG~~~lYa~NiT~~~~~em~~ra~~~~e~gg~~~~~~~lmi~-~~~~G----~--  132 (320)
T d5ruba1          60 GNQPFAPLRDTIALVADAMRRAQDETGEAKLFSANITADDPFEIIARGEYVLETFGENASHVALLVD-GYVAG----A--  132 (320)
T ss_dssp             SCBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHHGGGGGGEEEEEE-TTTSC----H--
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHhCCcceeeecccCCCHHHHHHHHHHHHHhcCccccceeEeec-ccccH----H--
Confidence            3456678899998777777765     3344 567877778899999999988765     344443 33221    2  


Q ss_pred             HHHHHHHHHccC-CCCEEEEeCCC------CcccccCHH---HHHHHH--c---CCCE-EEEeeC--CHHHHHHHHhh--
Q psy9711          71 IYEHFISVADNS-PIPVIIYNNTF------VTNIDISVD---TLVKLA--H---HENI-RGVKDT--DNIKLANMANQ--  130 (198)
Q Consensus        71 i~~y~~~i~~~~-~~pi~lYn~P~------~tg~~l~~~---~l~~L~--~---~p~i-~giK~s--d~~~~~~~~~~--  130 (198)
                        ..++.+.+.. ++|+..+-.-.      .....++.-   .+.||+  +   .|++ .+.+++  +-..+...+..  
T Consensus       133 --~~~~~lr~~~~~~~ih~H~a~~g~~~~~~~~~g~s~~vl~KL~RLaGaD~ih~~~~g~~~~~~~~~~~~~~~~~~~~~  210 (320)
T d5ruba1         133 --AAITTARRRFPDNFLHYHRAGHGAVTSPQSKRGYTAFVHCKMARLQGASGIHTGTMGFGKMEGESSDRAIAYMLTQDE  210 (320)
T ss_dssp             --HHHHHHHHHCTTSCEEEECTTTHHHHSTTCCSEECHHHHHHHHHHHTCSEEECCC---------CCHHHHHHHHHCSE
T ss_pred             --HHHHHHHHhccccccccccccccccccCCcCCcccHHHHHHHHHHhCcCeeeecCcccccccCcchhHHHhhhhhhhh
Confidence              2344555555 57765443210      011233443   556676  3   2444 223333  22222222211  


Q ss_pred             -----------cCCCCeEEEecChh--hHHHHh-hcCC-CeEEecccccc--h-------HHHHHHHHHHHcC
Q psy9711         131 -----------TKDLNFSVFAGSAG--YLLSGL-LVGC-AGGINALSAVL--G-------GPICELYDLAKAG  179 (198)
Q Consensus       131 -----------~~~~~~~v~~G~d~--~~~~~l-~~G~-~G~is~~~n~~--P-------~~~~~l~~~~~~g  179 (198)
                                 ...+-|.+.+|.-+  .+...+ ..|- |=.+...+.++  |       +.+++-|+++.+|
T Consensus       211 ~~~~~~~q~~~~lk~~~Pv~sgG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~AGa~A~rqA~eA~~~G  283 (320)
T d5ruba1         211 AQGPFYRQSWGGMKACTPIISGGMNALRMPGFFENLGNANVILTAGGGAFGHIDGPVAGARSLRQAWQAWRDG  283 (320)
T ss_dssp             EECSSCEEECTTCCCCEEEEEECCCTTTHHHHHHHHSCCCCEEEECTTTTCCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCcccCccccCCCCceecCCCCcHhHhHHHHHHhCCCcEEEEcCcccccCCCchHHhHHHHHHHHHHHHcC
Confidence                       01345778877543  333333 3674 54433333333  2       5677788888888

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.85  E-value=5.4  Score=29.68  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHhc-C---CeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQET-K---KTIIAG-TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA   79 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~-~---~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~   79 (198)
                      +.||.++++.+-++..+-. +   ..++-| ||+.-|.-++..+..+.+.|-.++++.|---.     -++.++.|+...
T Consensus        82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~L-----a~Qh~~~~~~~f  156 (264)
T d1gm5a3          82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL-----AIQHYRRTVESF  156 (264)
T ss_dssp             SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH-----HHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhh-----hHHHHHHHHHhh
Confidence            5799999988888877765 3   347777 57777899999999999999998888754322     233344444444


Q ss_pred             ccCCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEE
Q psy9711          80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRG  115 (198)
Q Consensus        80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~g  115 (198)
                      ...+..+.+++.-.  ...---+.+.++.+  ..=|+|
T Consensus       157 ~~~~~~v~~l~~~~--~~~~r~~~~~~~~~g~~~iiIG  192 (264)
T d1gm5a3         157 SKFNIHVALLIGAT--TPSEKEKIKSGLRNGQIDVVIG  192 (264)
T ss_dssp             TCSSCCEEECCSSS--CHHHHHHHHHHHHSSCCCEEEE
T ss_pred             hhccccceeecccc--chHHHHHHHHHHHCCCCCEEEe
Confidence            44467777766321  11112345666663  223555

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=84.72  E-value=5.2  Score=29.73  Aligned_cols=63  Identities=16%  Similarity=0.098  Sum_probs=50.8

Q ss_pred             EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          29 AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        29 ~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      +-+|.++.+.+.+.++...+.|||.+=+.-|+-.+..                .+.+.+++..+++....+.|++++..
T Consensus        23 ~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y  101 (261)
T d1rd5a_          23 ITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSY  101 (261)
T ss_dssp             EETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECC
T ss_pred             EeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeee
Confidence            3578999999999999999999999999988754322                35677888888888778899987643

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=83.77  E-value=6.8  Score=29.13  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHh-cCCCEEEEc--CCCCcC----CCCCHHHHHHHHHHHHccCCC
Q psy9711          13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAK-AGANAALIL--CPYYFQ----KKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus        13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~-~Gad~v~~~--~P~y~~----~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      .+..+...+.. ..|+++.++..+.++..+.++...+ .|+|++-+-  .|....    ...+++-+....+.+-+.++.
T Consensus        86 ~~~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  165 (311)
T d1ep3a_          86 TEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKV  165 (311)
T ss_dssp             HTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSS
T ss_pred             hhhhhhhhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhccCC
Confidence            34445444555 8999999999899988888887754 588887553  443211    011255555666666667789


Q ss_pred             CEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEee----------------------C-------CHHHHHHHHhhcCC
Q psy9711          85 PVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKD----------------------T-------DNIKLANMANQTKD  133 (198)
Q Consensus        85 pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~----------------------s-------d~~~~~~~~~~~~~  133 (198)
                      |+.+--.|..   .-..+....+.+.  ..++.+..                      +       ++..+.++. +.  
T Consensus       166 p~~vkl~~~~---~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~-~~--  239 (311)
T d1ep3a_         166 PLYVKLSPNV---TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA-QD--  239 (311)
T ss_dssp             CEEEEECSCS---SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHH-TT--
T ss_pred             Ceeeeecccc---cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHh-hh--
Confidence            9998666643   2233333333332  23332221                      1       012223322 22  


Q ss_pred             CCeEEEe-c-Ch--hhHHHHhhcCCCeEEeccccc-chHHHHHHHH
Q psy9711         134 LNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAV-LGGPICELYD  174 (198)
Q Consensus       134 ~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~  174 (198)
                      -++.|+. | -.  ......+..|++++..+.+.+ -|.++.++.+
T Consensus       240 ~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~~I~~  285 (311)
T d1ep3a_         240 VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIID  285 (311)
T ss_dssp             CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHH
T ss_pred             cceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHHHHHH
Confidence            2455543 2 11  235677789999999988765 2655555544

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=83.71  E-value=6.3  Score=28.69  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhc-CC---eEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711           4 SFKSTEEEKLKIISTLRQET-KK---TIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV   78 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~-~~---pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i   78 (198)
                      -+.||.+++..+-++..+-. ..   .++.|+ |+.-|.-++..+..+.+.|-.++++.| -       .-=-.+||+.+
T Consensus        53 P~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~P-t-------~~La~Q~~~~~  124 (233)
T d2eyqa3          53 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP-T-------TLLAQQHYDNF  124 (233)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS-S-------HHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEcc-H-------HHhHHHHHHHH
Confidence            46789888877666655554 33   367775 667799999999999999998887764 2       22223555555


Q ss_pred             Hc---cCCCCEEEEeCCCCcccccCHHHHHHHHc-CCC-EEE
Q psy9711          79 AD---NSPIPVIIYNNTFVTNIDISVDTLVKLAH-HEN-IRG  115 (198)
Q Consensus        79 ~~---~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~-i~g  115 (198)
                      .+   ..+..|.+++.-.  ...-..+.+..+.+ ..+ |+|
T Consensus       125 ~~~~~~~~~~v~~l~~~~--~~~~~~~~~~~~~~g~~~iviG  164 (233)
T d2eyqa3         125 RDRFANWPVRIEMISRFR--SAKEQTQILAEVAEGKIDILIG  164 (233)
T ss_dssp             HHHSTTTTCCEEEESTTS--CHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHhhCCCEEEeccCcc--cchhHHHHHHHHhCCCCCEEEe
Confidence            54   4567777776422  11112345666663 233 454

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.71  E-value=4.6  Score=30.40  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711           6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY   61 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y   61 (198)
                      ..+++.-.++++.+.+..++||++=++. ...+..+.++.+++.|+|++.+.....
T Consensus       153 ~~~~~~~~~i~~~v~~~~~~pv~vKl~~-~~~~~~~i~~~~~~~g~~gi~~~n~~~  207 (312)
T d1gtea2         153 GQDPELVRNICRWVRQAVQIPFFAKLTP-NVTDIVSIARAAKEGGADGVTATNTVS  207 (312)
T ss_dssp             GGCHHHHHHHHHHHHHHCSSCEEEEECS-CSSCHHHHHHHHHHHTCSEEEECCCEE
T ss_pred             hhhHHHHHHHHHHHhhccCCceeecccc-cchhHHHHHHHHHHhcccceEEEeecc
Confidence            3456667778888776669999987664 334556888999999999999986543

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.57  E-value=1.6  Score=32.76  Aligned_cols=87  Identities=11%  Similarity=0.108  Sum_probs=60.9

Q ss_pred             HHHHHHHhcCCCEEEEcCCC-------CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH----HHHHc
Q psy9711          41 DLTQKAAKAGANAALILCPY-------YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL----VKLAH  109 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~-------y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~  109 (198)
                      ..|+.+.++|+|.+++....       -...+.|-++++.|.+.|.+.++-++++=|.|..+ +..+.+..    .++.+
T Consensus        28 ~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s-~~~s~~~a~~nA~r~~~  106 (262)
T d1oy0a_          28 STARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGS-YEAGPTAALAAATRFLK  106 (262)
T ss_dssp             HHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTS-STTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccceeEecchhhh-cccchHHHHHHHHHHHh
Confidence            36788889999999986431       11122469999999999999999999999999643 33444433    35556


Q ss_pred             CCCEEEEeeC-C---HHHHHHHH
Q psy9711         110 HENIRGVKDT-D---NIKLANMA  128 (198)
Q Consensus       110 ~p~i~giK~s-d---~~~~~~~~  128 (198)
                      .-..-++|.+ .   .+.+..+.
T Consensus       107 ~~ga~avkleg~~~~~~~I~~L~  129 (262)
T d1oy0a_         107 DGGAHAVKLEGGERVAEQIACLT  129 (262)
T ss_dssp             TTCCSEEEEEBSGGGHHHHHHHH
T ss_pred             ccccceeeechhhhhHHHHHHHH
Confidence            6778888887 3   34444444

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=83.52  E-value=3  Score=31.18  Aligned_cols=77  Identities=16%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             HHHHHHHhcCCCEEEEcCCC----C---cCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHH----HHc
Q psy9711          41 DLTQKAAKAGANAALILCPY----Y---FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVK----LAH  109 (198)
Q Consensus        41 ~~a~~a~~~Gad~v~~~~P~----y---~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~----L~~  109 (198)
                      ..|+.+.++|+|.+++....    +   ...+.|-++++.|.+.+.+.++-++++-|.|..+ +..+.+...+    +.+
T Consensus        26 ~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~s-y~~~~~~~~~a~~~~~~  104 (260)
T d1o66a_          26 SFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGA-YQQSKEQAFAAAAELMA  104 (260)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTS-SSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhh-hcchhHHHHHHHHHHHH
Confidence            45778889999999995431    1   1122468999999999999999999999999744 4555544433    223


Q ss_pred             CCCEEEEeeC
Q psy9711         110 HENIRGVKDT  119 (198)
Q Consensus       110 ~p~i~giK~s  119 (198)
                       -..-++|.+
T Consensus       105 -~gadavk~e  113 (260)
T d1o66a_         105 -AGAHMVKLE  113 (260)
T ss_dssp             -TTCSEEEEE
T ss_pred             -hhhhhcccc
Confidence             367789988

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=5.9  Score=29.81  Aligned_cols=96  Identities=8%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhc---CCeEEEeCCC-----------------CcHHHHHHHHHHHHhcCCCEEEEcCCC---
Q psy9711           4 SFKSTEEEKLKIISTLRQET---KKTIIAGTYC-----------------ESTRATIDLTQKAAKAGANAALILCPY---   60 (198)
Q Consensus         4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~-----------------~~~~~~i~~a~~a~~~Gad~v~~~~P~---   60 (198)
                      +..|+.+|-.+..+.+++.+   ++.|=+-+|.                 ++++++.+   +.++.|+|.+-+.--.   
T Consensus       104 ~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~---Fv~~TgvD~LAvaiGt~HG  180 (284)
T d1gvfa_         104 GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKR---FVELTGVDSLAVAIGTAHG  180 (284)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHH---HHHHHCCSEEEECSSCCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHH---HHHHhCCCEEeeecCceee
Confidence            46789999999999999998   6665332222                 22344444   4557899998887321   


Q ss_pred             -C-cCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711          61 -Y-FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE  111 (198)
Q Consensus        61 -y-~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p  111 (198)
                       | ..|..+    ++-.++|.+.+++|++++     .|..++.+.+.+..+..
T Consensus       181 ~y~~~p~l~----~~~L~~i~~~~~vPLVlH-----GgSG~~~e~i~~ai~~G  224 (284)
T d1gvfa_         181 LYSKTPKID----FQRLAEIREVVDVPLVLH-----GASDVPDEFVRRTIELG  224 (284)
T ss_dssp             CCSSCCCCC----HHHHHHHHHHCCSCEEEC-----CCTTCCHHHHHHHHHTT
T ss_pred             ccCCCCccc----cchhhhhhccccCCeEee-----CCCCCCHHHHHHHHHcC
Confidence             2 223222    244678888889999994     34557899999887654

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=83.33  E-value=5  Score=29.80  Aligned_cols=52  Identities=10%  Similarity=0.098  Sum_probs=35.6

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEEE
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIY   89 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~lY   89 (198)
                      +.+..++.++.+.++|+|.+.+.-.. ...  +|.++.+.++.+.+..  ++|+-+|
T Consensus       159 ~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~--~P~~v~~li~~l~~~~~~~i~i~~H  212 (303)
T d1rqba2         159 TVEGYVKLAGQLLDMGADSIALKDMA-ALL--KPQPAYDIIKAIKDTYGQKTQINLH  212 (303)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEETT-CCC--CHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CHHHHHHHHHHHHhcCCcEEeecCcc-chh--hhHHHHHHHHHHHhhcCCcccceec
Confidence            45667777888888888877766554 333  3778888888877664  4677666

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=83.22  E-value=1.5  Score=32.92  Aligned_cols=52  Identities=15%  Similarity=0.089  Sum_probs=24.7

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCC--CcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPY--YFQKKMTEDLIYEHFISVADNS--PIPVII   88 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~--y~~~~~~~~~i~~y~~~i~~~~--~~pi~l   88 (198)
                      +.+...+++++..+.|++++++..-.  ++..|  .+|-.+-.+.+.+.+  ++|++.
T Consensus        22 D~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls--~~Er~~l~~~~~~~~~~~~~vi~   77 (292)
T d1xkya1          22 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLT--SEEKVALYRHVVSVVDKRVPVIA   77 (292)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC--HHHHHHHHHHHHHHHTTSSCEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECeEccchhhCC--HHHHHHHHHHHHHHhCCCceEEE
Confidence            34555555555555555555554222  22222  555555555555443  245554

>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Isocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=8.5  Score=30.55  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711           7 STEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKAG   50 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~G   50 (198)
                      .+.+|..+=+++++.+.     ..-||+=+-+                               .+++++|++++.+.+ |
T Consensus       203 v~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~-g  281 (416)
T d1igwa_         203 VPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAP-Y  281 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-G
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhhhccchhcccCcccCccCccccccccCChHHHHHHHHHhhc-c
Confidence            46677777777776554     4556666644                               468999999998888 9


Q ss_pred             CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      ||.+.+-.|.   |+  .++...+-+.|-...+.-++.||.
T Consensus       282 ADli~~Et~~---~~--~e~a~~fa~~v~~~~p~~~l~yn~  317 (416)
T d1igwa_         282 ADLVWCETST---PD--LELARRFAQAIHAKYPGKLLAYNC  317 (416)
T ss_dssp             CSEEEECCSS---CC--HHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             ccEEeeecCC---CC--HHHHHHHHHhcCCCchhHhhccCC
Confidence            9999987664   44  677777777777766777889985

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=82.91  E-value=2.8  Score=31.72  Aligned_cols=153  Identities=13%  Similarity=0.048  Sum_probs=92.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEeC--CCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcC-------CC-CCHHHHHH
Q psy9711           5 FKSTEEEKLKIISTLRQETKKTIIAGT--YCE-STRATIDLTQKAAKAGANAALILCPYYFQ-------KK-MTEDLIYE   73 (198)
Q Consensus         5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-------~~-~~~~~i~~   73 (198)
                      -.+|.+|..+.++.+++.+.+||++-.  |-. +...+.+.++.+.++|+.++.+---.+-+       .. .+.++..+
T Consensus        58 ~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~  137 (289)
T d1muma_          58 GISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVD  137 (289)
T ss_dssp             SCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHH
T ss_pred             CCCChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHH
Confidence            458999999999999988899999954  323 35688899999999999999997542211       11 24777777


Q ss_pred             HHHHHHccCCCC-EEEEeCCCCccc----ccCHHHHHHHHc---C-CCEEEEeeC--CHHHHHHHHhhcCCCCe-EEEec
Q psy9711          74 HFISVADNSPIP-VIIYNNTFVTNI----DISVDTLVKLAH---H-ENIRGVKDT--DNIKLANMANQTKDLNF-SVFAG  141 (198)
Q Consensus        74 y~~~i~~~~~~p-i~lYn~P~~tg~----~l~~~~l~~L~~---~-p~i~giK~s--d~~~~~~~~~~~~~~~~-~v~~G  141 (198)
                      -.+...++-.-| ++|-=   ||-.    .++ +.++|...   - -.++-+ .+  +...+.++.+....|-+ .+..|
T Consensus       138 ki~aa~~a~~~~d~~IiA---RTDa~~~~g~~-eAi~R~~aY~eAGAD~vf~-~~~~~~~~~~~~~~~~~~Pl~~~~~~~  212 (289)
T d1muma_         138 RIRAAVDAKTDPDFVIMA---RTDALAVEGLD-AAIERAQAYVEAGAEMLFP-EAITELAMYRQFADAVQVPILANITEF  212 (289)
T ss_dssp             HHHHHHHTCSSTTSEEEE---EECCHHHHCHH-HHHHHHHHHHHTTCSEEEE-TTCCCHHHHHHHHHHHCSCBEEECCSS
T ss_pred             HHHHHHHhcCCcchhhee---ccccccccCHH-HHHHHHHHhhhcCCcEEEe-cCCCCHHHHHHHHHhcCCCEEEeecCc
Confidence            777777765433 44321   2211    132 56777652   2 233332 23  66666666533222322 22333


Q ss_pred             Chh---hHHHHhhcCCCeEEeccc
Q psy9711         142 SAG---YLLSGLLVGCAGGINALS  162 (198)
Q Consensus       142 ~d~---~~~~~l~~G~~G~is~~~  162 (198)
                      ...   ..-..-.+|.+-++-+..
T Consensus       213 ~~~p~~s~~eL~~~Gv~~v~~~~~  236 (289)
T d1muma_         213 GATPLFTTDELRSAHVAMALYPLS  236 (289)
T ss_dssp             SSSCCCCHHHHHHTTCSEEEESSH
T ss_pred             CCCccchHHHHHHhccceEEechH
Confidence            322   133445688887666554

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=82.19  E-value=9.8  Score=29.79  Aligned_cols=113  Identities=12%  Similarity=0.142  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEE
Q psy9711          36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIR  114 (198)
Q Consensus        36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~  114 (198)
                      ..+..+++....++|+|.+++-...-+     .+.+.+..+.+-... ++||+.       |+..+.+....|.+. ...
T Consensus       149 ~~~~~~ra~~L~~aG~D~ivID~AhG~-----s~~~~~~i~~ik~~~~~v~vIa-------GNV~T~e~a~~L~~~-GaD  215 (388)
T d1eepa_         149 DIDTIERVEELVKAHVDILVIDSAHGH-----STRIIELIKKIKTKYPNLDLIA-------GNIVTKEAALDLISV-GAD  215 (388)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEECCSCCS-----SHHHHHHHHHHHHHCTTCEEEE-------EEECSHHHHHHHHTT-TCS
T ss_pred             CHHHHHHHHHHHhhccceeeeeccccc-----hHHHHHHHHHHHHHCCCCceee-------ccccCHHHHHHHHhc-CCC
Confidence            456788889999999999998765532     444455555554444 688876       445789999999965 478


Q ss_pred             EEeeC------CHH---------HHHHHH---hhcCCCCeEEE-ec---ChhhHHHHhhcCCCeEEecc
Q psy9711         115 GVKDT------DNI---------KLANMA---NQTKDLNFSVF-AG---SAGYLLSGLLVGCAGGINAL  161 (198)
Q Consensus       115 giK~s------d~~---------~~~~~~---~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~~  161 (198)
                      |||..      -..         ++..+.   ....+.+..|. .|   ..+.+.-++.+|+|.++.|.
T Consensus       216 ~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~  284 (388)
T d1eepa_         216 CLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGN  284 (388)
T ss_dssp             EEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECH
T ss_pred             eeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccceeecch
Confidence            88877      112         222221   11223345554 33   23467889999999888764

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=81.92  E-value=3.6  Score=30.02  Aligned_cols=77  Identities=6%  Similarity=-0.006  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711           9 EEEKLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI   84 (198)
Q Consensus         9 ~~Er~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~   84 (198)
                      ..=+.++.+-+.+++   ++.+.. +.+..+....++..+.+...|+|++++.|....       .+....+... ..++
T Consensus        15 npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~-------~~~~~~~~a~-~~gi   86 (316)
T d1tjya_          15 VGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD-------GLCPALKRAM-QRGV   86 (316)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS-------TTHHHHHHHH-HTTC
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCeeeecccccc-------hhhhhhhhhh-cccc
Confidence            333445555555555   777654 556678888999999999999999999865422       1223344433 4689


Q ss_pred             CEEEEeCCC
Q psy9711          85 PVIIYNNTF   93 (198)
Q Consensus        85 pi~lYn~P~   93 (198)
                      |++.+|.+.
T Consensus        87 ~vv~~d~~~   95 (316)
T d1tjya_          87 KILTWDSDT   95 (316)
T ss_dssp             EEEEESSCC
T ss_pred             cceeccccc
Confidence            999998743

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=81.66  E-value=3.1  Score=30.21  Aligned_cols=78  Identities=6%  Similarity=-0.025  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHHHHHhc---C--CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711           7 STEEEKLKIISTLRQET---K--KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus         7 Lt~~Er~~l~~~~~~~~---~--~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      ++.+=+.++.+-+.+++   +  +-++.+-+..+.....+..+.+.+.|+|++++.+..... .  .    ...+... .
T Consensus        11 ~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~-~--~----~~l~~~~-~   82 (288)
T d1guda_          11 LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN-L--V----MPVARAW-K   82 (288)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST-T--H----HHHHHHH-H
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCcch-h--h----HHHHHHH-h
Confidence            44444555555555555   3  344444555678888999999999999998887544322 1  2    2334443 4


Q ss_pred             CCCCEEEEeCC
Q psy9711          82 SPIPVIIYNNT   92 (198)
Q Consensus        82 ~~~pi~lYn~P   92 (198)
                      .++|++.+|.+
T Consensus        83 ~gipvv~~d~~   93 (288)
T d1guda_          83 KGIYLVNLDEK   93 (288)
T ss_dssp             TTCEEEEESSC
T ss_pred             CCCeEEEeCCC
Confidence            68999999864

>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Escherichia coli [TaxId: 562]

Probab=81.52  E-value=1.5  Score=33.90  Aligned_cols=48  Identities=13%  Similarity=0.226  Sum_probs=39.2

Q ss_pred             cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711          35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN   91 (198)
Q Consensus        35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~   91 (198)
                      +.+++++-+..=.+-|||.+|+=|-..+         ++-.+.+.+.+++|+..||.
T Consensus       224 n~~ea~~e~~~d~~EGAD~lmVKPa~~y---------LDii~~~k~~~~~Pv~aYqV  271 (323)
T d1l6sa_         224 NRREAIRESLLDEAQGADCLMVKPAGAY---------LDIVRELRERTELPIGAYQV  271 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCSBEEEESCTTC---------HHHHHHHHTTCSSCEEEEEC
T ss_pred             cchHHHHHHHHHHhhccceEEeccchhh---------HHHHHHHHHhcCCCEEEEEc
Confidence            5688999998888899999999875543         24567788889999999994

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.36  E-value=1.6  Score=32.38  Aligned_cols=63  Identities=13%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN   81 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~   81 (198)
                      ...++..++..++|||++.|=.+..|    +..|.++|+|+|++-.-..-..+  +..+-+-|+.-.++
T Consensus       168 ~~~l~~i~~~~~vpvivdAGIg~psd----aa~AMElG~dgVLvnsaIa~A~d--P~~mA~A~~~Av~a  230 (243)
T d1wv2a_         168 PYNLRIILEEAKVPVLVDAGVGTASD----AAIAMELGCEAVLMNTAIAHAKD--PVMMAEAMKHAIVA  230 (243)
T ss_dssp             HHHHHHHHHHCSSCBEEESCCCSHHH----HHHHHHHTCSEEEESHHHHTSSS--HHHHHHHHHHHHHH
T ss_pred             HHHHHhccccCCcceEeecccCCHHH----HHHHHHccCCEEEechHhhcCCC--HHHHHHHHHHHHHH

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=81.20  E-value=9.9  Score=29.68  Aligned_cols=142  Identities=11%  Similarity=0.056  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHHhc-----------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711           6 KSTEEEKLKIISTLRQET-----------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH   74 (198)
Q Consensus         6 ~Lt~~Er~~l~~~~~~~~-----------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y   74 (198)
                      .+++++..+-++.+.+..           ++.+-+.++.  .++..+++....++|+|.+.+-.+.-+     .+...+.
T Consensus        78 ~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~--~~~~~~~~~~l~~agv~vi~id~a~g~-----~~~~~~~  150 (378)
T d1jr1a1          78 NCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGT--HEDDKYRLDLLALAGVDVVVLDSSQGN-----SIFQINM  150 (378)
T ss_dssp             SSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECS--STHHHHHHHHHHHHTCCEEEECCSSCC-----SHHHHHH
T ss_pred             CCCHHHHHHHHheehhhhhCcccccccccCEEEEEEecc--CHHHHHHHHHHHhhccceEeeeccCcc-----chhhHHH
Confidence            467888888877776543           2223344443  356677788888999999988776533     3334444


Q ss_pred             HHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC----C--HH---------HHHHHH---hhcCCCC
Q psy9711          75 FISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT----D--NI---------KLANMA---NQTKDLN  135 (198)
Q Consensus        75 ~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s----d--~~---------~~~~~~---~~~~~~~  135 (198)
                      .+.+-+.. ++||+.=|.       .+++...+|.+. ..-++|..    .  ..         ++..+.   ......+
T Consensus       151 i~~ik~~~~~~~iIaGnV-------aT~e~a~~L~~a-GAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~  222 (378)
T d1jr1a1         151 IKYMKEKYPNLQVIGGNV-------VTAAQAKNLIDA-GVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFG  222 (378)
T ss_dssp             HHHHHHHSTTCEEEEEEE-------CSHHHHHHHHHH-TCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHCCCCceeeccc-------ccHHHHHHHHHh-CCCEEeeccccccccccccccccCcccchhhhHHHHhhcccC
Confidence            44444444 688887664       578888888753 25566665    1  11         222221   1111223


Q ss_pred             eEEE-ec---ChhhHHHHhhcCCCeEEeccc
Q psy9711         136 FSVF-AG---SAGYLLSGLLVGCAGGINALS  162 (198)
Q Consensus       136 ~~v~-~G---~d~~~~~~l~~G~~G~is~~~  162 (198)
                      ..|. .|   ....+..++.+|+++++.|..
T Consensus       223 vpIIADGGi~~~gdiakAla~GAd~VMmGs~  253 (378)
T d1jr1a1         223 VPVIADGGIQNVGHIAKALALGASTVMMGSL  253 (378)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred             CceecccccccCCceeeEEEeecceeeecce
Confidence            4444 33   234678899999999997764

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.02  E-value=1.8  Score=30.64  Aligned_cols=54  Identities=11%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711          13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF   75 (198)
Q Consensus        13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~   75 (198)
                      .++++.+.+..++||+++-|=.+.+++.+    +.++|||+|++..... +    ++++.+.|
T Consensus       164 ~~~i~~~~~~~~iPVia~GGI~t~~d~~~----~~~~GAdgV~iGsAi~-r----p~~~~~~f  217 (222)
T d1y0ea_         164 FQFLKDVLQSVDAKVIAEGNVITPDMYKR----VMDLGVHCSVVGGAIT-R----PKEITKRF  217 (222)
T ss_dssp             HHHHHHHHHHCCSEEEEESSCCSHHHHHH----HHHTTCSEEEECHHHH-C----HHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEeCCCCCHHHHHH----HHHcCCCEEEEchhhc-C----HHHHHHHH
Confidence            34555555555999998655444444443    4578999999998642 2    66665544

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=80.80  E-value=8.6  Score=28.25  Aligned_cols=128  Identities=17%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             CCeEEEeC-CCCcHHHHHHHHHHHHhcC-CCEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711          24 KKTIIAGT-YCESTRATIDLTQKAAKAG-ANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID   98 (198)
Q Consensus        24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~G-ad~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~   98 (198)
                      ++.++-.+ |..+.+|+++.++.|.+++ -+-+   ++..|.|..|+  +.+.++--+.+.+ -+--|+-|-++.     
T Consensus        64 ~~~lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~~~L~PD--~~etl~Aae~Lv~-eGF~VlpY~~~D-----  135 (251)
T d1xm3a_          64 KYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPD--PVETLKASEQLLE-EGFIVLPYTSDD-----  135 (251)
T ss_dssp             GSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBC--HHHHHHHHHHHHH-TTCCEEEEECSC-----
T ss_pred             ceEEccchHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCCCCcCCC--HHHHHHHHHHHHh-CCcEEEEecCCC-----
Confidence            56677654 6778899999999999995 4433   23468888888  9999999999985 478899998764     


Q ss_pred             cCHHHHHHHHcCC--CE------EEEeeC--CHHHHHHHHhhcCCCCeEEEec--ChhhHHHHhhcCCCeEEeccc
Q psy9711          99 ISVDTLVKLAHHE--NI------RGVKDT--DNIKLANMANQTKDLNFSVFAG--SAGYLLSGLLVGCAGGINALS  162 (198)
Q Consensus        99 l~~~~l~~L~~~p--~i------~giK~s--d~~~~~~~~~~~~~~~~~v~~G--~d~~~~~~l~~G~~G~is~~~  162 (198)
                        +-+-++|.+..  -|      +|-=..  |+..++.++.+ .+-.+.|=.|  ..+....+|.+|+||++-.++
T Consensus       136 --~v~ak~Le~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTA  208 (251)
T d1xm3a_         136 --VVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTA  208 (251)
T ss_dssp             --HHHHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             --HHHHHHHHHcCChhHHHhhhhhhcCCCcCChHHHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEechh
Confidence              66677777532  22      111112  56777666643 3333433344  345778899999999997776

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.77  E-value=2.6  Score=31.54  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711          12 KLKIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH   74 (198)
Q Consensus        12 r~~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y   74 (198)
                      ..++++..++. ++||+.|+|-..-                 .+.++.++..+++||.++++-.        -++++-  
T Consensus       121 ~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE~--------Vp~~la--  189 (262)
T d1oy0a_         121 VAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEM--------VPAELA--  189 (262)
T ss_dssp             GHHHHHHHHHH-TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEES--------CCHHHH--
T ss_pred             hHHHHHHHHhc-CCceEEeeeecceeeeecCccceeccchhhhHhHHHHHHHHhCCcEEEeccc--------ccHhHH--
Confidence            34556666555 8999998864321                 3345667788899999988862        144443  


Q ss_pred             HHHHHccCCCCEEEEe-CCCCcccccCHHHHHHHH
Q psy9711          75 FISVADNSPIPVIIYN-NTFVTNIDISVDTLVKLA  108 (198)
Q Consensus        75 ~~~i~~~~~~pi~lYn-~P~~tg~~l~~~~l~~L~  108 (198)
                       +.|.+.+++|++=.= -|...|..+=...+.-+.
T Consensus       190 -~~It~~~~IPtIGIGAG~~cDGQvLV~~DiLG~~  223 (262)
T d1oy0a_         190 -TQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFS  223 (262)
T ss_dssp             -HHHHHHCSSCEEEESSCSCSSEEEECHHHHTTCS
T ss_pred             -HHHHhhCCceEEEeccCCCCCeeEEeHHhhhCCC
Confidence             578889999999443 344455555555555554

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.29  E-value=2.2  Score=31.47  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711          14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI   76 (198)
Q Consensus        14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~   76 (198)
                      ++++.+.+..+.|++++-|-.+.++..+    +.+.|++++++..-+|+.- .+.+++.+|.+
T Consensus       187 ~~~~~i~~~~~~pii~~GGv~~~~di~~----l~~~g~~gv~~gs~l~~~~-~~~~~lk~~l~  244 (252)
T d1h5ya_         187 ELIRRVADSVRIPVIASGGAGRVEHFYE----AAAAGADAVLAASLFHFRV-LSIAQVKRYLK  244 (252)
T ss_dssp             HHHHHHHHHCSSCEEEESCCCSHHHHHH----HHHTTCSEEEESHHHHTTS-SCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEecCCCCHHHHHH----HHHCCCCEEEEhhHHHcCC-CCHHHHHHHHH
Confidence            4566665555899999877777776443    4467999999987776543 24888888765

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=80.18  E-value=1.1  Score=33.41  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711          24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV   94 (198)
Q Consensus        24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~   94 (198)
                      +..||+-+-..|+        .+..++++.++ .||+++.++. |.||..+  .    ++.+.+.+.+++||+-=|+=-.
T Consensus        40 ~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~ye-~GA~aiSVLTd~~~F~Gs--~----~~l~~vr~~~~~PiLrKDFIid  112 (251)
T d1i4na_          40 RVKIIAEFKKASPSAGDINADASLEDFIRMYD-ELADAISILTEKHYFKGD--P----AFVRAARNLTCRPILAKDFYID  112 (251)
T ss_dssp             SCEEEEEECSBCSSSCBSCTTCCHHHHHHHHH-HHCSEEEEECCCSSSCCC--T----HHHHHHHTTCCSCEEEECCCCS
T ss_pred             CCeEEEeeecCCCCCCCCcCCccHHHHHHHHh-cCCcceEEecccCCCCCC--H----HHHHHHhhcccCchhhhhhhhC
Confidence            6889987633332        36678888885 5999999986 7777766  4    4577888889999987765110


Q ss_pred             ---------ccc--------ccCHHHHHHHHc---CCCEEEEeeC-CHHHHHHHH
Q psy9711          95 ---------TNI--------DISVDTLVKLAH---HENIRGVKDT-DNIKLANMA  128 (198)
Q Consensus        95 ---------tg~--------~l~~~~l~~L~~---~p~i~giK~s-d~~~~~~~~  128 (198)
                               .|-        .++.+.+.+|.+   .=++-.+=+- |...+.+.+
T Consensus       113 ~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al  167 (251)
T d1i4na_         113 TVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVF  167 (251)
T ss_dssp             THHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHH
T ss_pred             HHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHh
Confidence                     111        466666666653   2355555555 666665544

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=80.12  E-value=2.5  Score=30.65  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711          11 EKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD   80 (198)
Q Consensus        11 Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~   80 (198)
                      +-.++++...+.. ++||+.| |+-++.+..+.   +...|+||+++..-.....+ ....+.+..+.+.+
T Consensus       159 ~i~~~i~~~~~~~~~i~vlyg-GgV~~~n~~~~---~~~~g~dGvLVGsA~l~a~d-~~~~i~~l~~~~~~  224 (226)
T d1w0ma_         159 AIVETVGLVSRHFPEVSVITG-AGIESGDDVAA---ALRLGTRGVLLASAAVKAKD-PYAKIVELAKPLSE  224 (226)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEE-SSCCSHHHHHH---HHHTTCSEEEECHHHHTCSS-HHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhccCCCceEEEe-cCcCChHHHHH---HhcCCCCEEEechheecCCC-HHHHHHHHHHHHHh
Confidence            4445566666666 8999998 44556655443   44689999999865543221 13455555555543