Psyllid ID: psy9719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQVLS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHccccHHHHHHHHHHHHHHEEEccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHcHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcc
Coil and Loop (DISEMBL)
mkepkkfrqpfgvfnIGIFLTAMLFAITGLCgymkygndaqssitlniasdqkrktyctwptfvhfeystglcgymkygndaqssiTLNIASDQKLAQVVKLLYALVVFFtyplqnfvplELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFClaslgiifpATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIqedfhpktqvls
Flexible Loop (DISEMBL)
mkepkkfrqpfgVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQedfhpktqvls
Low Complexity Region (SEG)
MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQVLS
Disordered region (IsUnstruct)
********QPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDF********
Disordered Region (DISOPRED)
****KKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFT**************
Disordered Region (DISEMBL)
MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQVLS
Disordered Region (DISPRO)
****KKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQE**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQVLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.649	0.308	0.307	2e-18
Q495N2	470	Proton-coupled amino acid	no	N/A	0.673	0.355	0.363	3e-18
Q811P0	477	Proton-coupled amino acid	yes	N/A	0.653	0.339	0.389	1e-17
Q8CH36	500	Proton-coupled amino acid	no	N/A	0.645	0.32	0.337	3e-17
Q4V8B1	477	Proton-coupled amino acid	yes	N/A	0.653	0.339	0.377	5e-17
Q6YBV0	504	Proton-coupled amino acid	no	N/A	0.899	0.442	0.289	1e-16
Q7Z2H8	476	Proton-coupled amino acid	no	N/A	0.625	0.325	0.341	2e-16
Q924A5	475	Proton-coupled amino acid	no	N/A	0.653	0.341	0.339	2e-15
Q8K4D3	475	Proton-coupled amino acid	no	N/A	0.653	0.341	0.327	1e-14
Q495M3	483	Proton-coupled amino acid	no	N/A	0.637	0.327	0.331	2e-14

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 8/169 (4%)

Query: 69  STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYI 128
           S    GY  +G+  + SITLN+  D  L Q+VK+LY+  ++ TY +Q +VP E++    +
Sbjct: 340 SLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILYSFGIYVTYAIQYYVPAEII----L 395

Query: 129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATI 188
                +  + +KL+ E+  R  +V +T A A++IP LDL+IS  GA   ++L +I P  +
Sbjct: 396 PAVTSRVQKTRKLLCEFTMRFFLVCLTCAVAVLIPRLDLVISFVGAVSSSTLALILPPLV 455

Query: 189 HILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
            I+    E +      WV+ KD+ +   G    ++GT +++ ++   I 
Sbjct: 456 EIITYHKENLS----PWVIMKDVGIAVIGFVGFIAGTYVTIEEMIYPIS 500

Xenopus laevis (taxid: 8355)

>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 9/176 (5%)

Query: 71  GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
           G  GYMK+G+D Q+SITLN+  +  L Q VKL+Y++ +FFTY LQ  VP E++    I  
Sbjct: 302 GTLGYMKFGSDTQASITLNLP-NCWLYQSVKLMYSIGIFFTYALQFHVPAEII----IPF 356

Query: 131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
            + Q SE   L V+   R  +V +T   A++IP LDL+ISL G+   ++L +I PA + I
Sbjct: 357 AISQVSESWALFVDLSVRSALVCLTCVSAILIPRLDLVISLVGSVSSSALALIIPALLEI 416

Query: 191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQV 246
           ++   E +        + KDI +   GL   + GT  +L ++   I       T V
Sbjct: 417 VIFYSEDMSC----VTIAKDIMISIVGLLGCIFGTYQALYELPQPISHSMANSTGV 468

Homo sapiens (taxid: 9606)

>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 62  TFVHFEY-STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPL 120
           +FV F Y   G  GYMK+G D Q+SITLN+     L Q VKL+Y++ +FFTY LQ  VP 
Sbjct: 299 SFVIFLYICLGTLGYMKFGTDTQASITLNLPICW-LYQSVKLMYSVGIFFTYALQFHVPA 357

Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
           E++ V Y+   +   SE   L V+   R  +V +T   A++IP LDL+ISL G+   ++L
Sbjct: 358 EII-VPYVVSRV---SENWALFVDLTVRTALVCLTCFSAVLIPRLDLVISLVGSVSSSAL 413

Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
            II P  + I     E I        + KDI +   GL   V GT  +L ++
Sbjct: 414 AIIIPPLLEIATFYSENISCA----TIVKDIMISILGLLGCVLGTYQALYEM 461

Mus musculus (taxid: 10090)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 15/175 (8%)

Query: 74  GYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMI 133
           GYM + ++ + SITLN+  D  L Q VK+LY+  +F TY +Q +VP E++    I     
Sbjct: 322 GYMCFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTYSIQFYVPAEII----IPGVTA 377

Query: 134 QYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVL 193
           +   + K I E+  R L+V IT A A++IP LD++IS  GA   ++L +I P  + IL  
Sbjct: 378 RLHAKWKRICEFGIRSLLVSITRAGAILIPRLDIVISFVGAVSSSTLALILPPLVEILTF 437

Query: 194 RHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKTQVLS 248
             +        W++ K+I  IAF      +G V  L+  +  ++E  +P T V++
Sbjct: 438 SKDHYNI----WMILKNIS-IAF------TGVVGFLLGTYVTVEEIIYPTTAVVA 481

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 95/172 (55%), Gaps = 10/172 (5%)

Query: 62  TFVHFEY-STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPL 120
           +FV F Y   G  GYMK+G D Q+SITLN+  +  L Q VKL+Y++ +FFTY LQ  VP 
Sbjct: 299 SFVIFLYICLGTLGYMKFGADTQASITLNLP-NCWLYQSVKLMYSVGIFFTYALQFHVPA 357

Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
           E++ V Y+     + SE   L ++   R  +V +T   A++IP LDL+ISL G+   ++L
Sbjct: 358 EII-VPYVVS---RASENWALFIDLTVRAALVCLTCFSAVLIPRLDLVISLVGSVSSSAL 413

Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
            +I P  + I     E I        + KDI +   GL   V GT  +L ++
Sbjct: 414 ALIIPPLLEIATFYSENISCT----TIAKDIMISILGLLGCVLGTYQALYEM 461

Rattus norvegicus (taxid: 10116)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 29/252 (11%)

Query: 1   MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSI----TLNIASDQKRKT 56
           M +P       G     +F    +FA  G+   +   N  + S      LNI        
Sbjct: 258 MPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMKESKRFPQALNIGMGIVTTL 317

Query: 57  YCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQN 116
           Y T  T           GYM + ++ + SITLN+  D  L Q VK+LY+  +F TY +Q 
Sbjct: 318 YVTLATL----------GYMCFHDEIKGSITLNLPQDVWLYQSVKILYSFGIFVTYSIQF 367

Query: 117 FVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFC 176
           +VP E++    I     ++  + K I E+  R  +V IT A A++IP LD++IS  GA  
Sbjct: 368 YVPAEII----IPGITSKFHTKWKQICEFGIRSFLVSITCAGAILIPRLDIVISFVGAVS 423

Query: 177 LASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAI 236
            ++L +I P  + IL    E        W++ K+I  IAF      +G V  L+  +  +
Sbjct: 424 SSTLALILPPLVEILTFSKEHYNI----WMVLKNIS-IAF------TGVVGFLLGTYITV 472

Query: 237 QEDFHPKTQVLS 248
           +E  +P  +V++
Sbjct: 473 EEIIYPTPKVVA 484

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query: 69  STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYI 128
           S G  GY+++G + Q SITLN+  +  L Q VKLLY++ +FFTY LQ +VP E++   ++
Sbjct: 305 SLGCLGYLQFGANIQGSITLNLP-NCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFV 363

Query: 129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATI 188
            +      E  +L+V+   R ++V +T   A++IP LDL+ISL G+   ++L +I P  +
Sbjct: 364 SRA----PEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLL 419

Query: 189 HILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
            +     E    G     +FKD  +   G    V GT  +L ++
Sbjct: 420 EVTTFYSE----GMSPLTIFKDALISILGFVGFVVGTYEALYEL 459

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 9/171 (5%)

Query: 69  STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYI 128
           S G  GY+++G D + SITLN+  +  L Q VKLLY++ +FFTY LQ +V  E++    I
Sbjct: 304 SLGSLGYLQFGADIKGSITLNLP-NCWLYQSVKLLYSIGIFFTYALQFYVAAEII----I 358

Query: 129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATI 188
              + +  ER +L+V+   R  +V +T   A++IP LDL+ISL G+   ++L +I P  +
Sbjct: 359 PAIVSRVPERFELVVDLSARTAMVCVTCVLAVLIPRLDLVISLVGSVSSSALALIIPPLL 418

Query: 189 HILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQED 239
            +     E    G     + KD  +   G    V GT  SL ++      D
Sbjct: 419 EVTTYYGE----GISPLTITKDALISILGFVGFVVGTYESLWELIQPSHSD 465

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 9/171 (5%)

Query: 69  STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYI 128
           S G  GY+++G + + SITLN+  +  L Q VKLLY++ +FFTY LQ +V  E++    I
Sbjct: 304 SLGSLGYLQFGANIKGSITLNLP-NCWLYQSVKLLYSIGIFFTYALQFYVAAEII----I 358

Query: 129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATI 188
              + +  E  +L+V+   R  +V +T   A++IP LDL+ISL G+   ++L +I P  +
Sbjct: 359 PAIVSRVPEHFELMVDLCVRTAMVCVTCVLAILIPRLDLVISLVGSVSSSALALIIPPLL 418

Query: 189 HILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQED 239
            ++    E    G     + KD  +   G    V GT  SL ++      D
Sbjct: 419 EVVTYYGE----GISPLTVTKDALISILGFVGFVVGTYESLCELIQPSHSD 465

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 74  GYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMI 133
           GY+++G+D ++SI+LN+  +  L Q VKLLY   +  TY LQ +VP E++    I   + 
Sbjct: 317 GYLRFGDDIKASISLNLP-NCWLYQSVKLLYIAGILCTYALQFYVPAEII----IPFAIS 371

Query: 134 QYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVL 193
           + S R  L ++   R ++V +T   A++IP LDL+ISL G+    +L +I P  + +   
Sbjct: 372 RVSTRWALPLDLSIRLVMVCLTCLLAILIPRLDLVISLVGSVSGTALALIIPPLLEVTTF 431

Query: 194 RHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHP 242
             E    G     +FKD  +   G    V GT  +L ++  +  ED HP
Sbjct: 432 YSE----GMSPLTIFKDALISILGFVGFVVGTYQALDELLKS--EDSHP 474

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
307189898	481	Proton-coupled amino acid transporter 1	0.745	0.384	0.370	6e-33
345495708	471	PREDICTED: proton-coupled amino acid tra	0.762	0.401	0.362	1e-32
332025159	501	Proton-coupled amino acid transporter 4	0.891	0.441	0.370	2e-32
383861318	467	PREDICTED: proton-coupled amino acid tra	0.653	0.346	0.449	2e-32
357605423	510	hypothetical protein KGM_21586 [Danaus p	0.875	0.425	0.389	1e-30
307204533	467	Proton-coupled amino acid transporter 1	0.661	0.351	0.426	2e-30
350402512	467	PREDICTED: proton-coupled amino acid tra	0.653	0.346	0.413	6e-30
322799033	478	hypothetical protein SINV_04773 [Solenop	0.657	0.341	0.420	7e-30
66513394	466	PREDICTED: proton-coupled amino acid tra	0.862	0.459	0.347	1e-29
340720657	500	PREDICTED: proton-coupled amino acid tra	0.661	0.328	0.410	1e-28

>gi|307189898|gb|EFN74142.1| Proton-coupled amino acid transporter 1 [Camponotus floridanus]

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 47/232 (20%)

Query: 1   MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTW 60
           MK P+ F   FGV NIG+ +  +L+ I G  G                            
Sbjct: 292 MKTPQNFGGYFGVLNIGMTVIVILYIIIGFFG---------------------------- 323

Query: 61  PTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPL 120
                         Y+KYG++A+ S+T N+  ++ ++Q +K+++A+ +F TY LQ +VP+
Sbjct: 324 --------------YVKYGSEAKGSVTFNLPQEEIMSQSIKIMFAIAIFITYALQAYVPV 369

Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
           E++W  Y+   +    + +K++ EYV R  + L T+  A+ IP L L ISLFGA CL++L
Sbjct: 370 EIIWNTYLNPRI----KNRKILWEYVCRTGVTLATFVLAIAIPRLGLFISLFGALCLSAL 425

Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
           GI FPA I I VL  E+  FGFL  +L K+IFLI FGL  +V GT IS++DI
Sbjct: 426 GIAFPAIIDICVLWPEK-NFGFLKALLIKNIFLIVFGLLGLVVGTYISIVDI 476

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495708|ref|XP_003427558.1| PREDICTED: proton-coupled amino acid transporter 1-like [Nasonia vitripennis]

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 121/237 (51%), Gaps = 48/237 (20%)

Query: 1   MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTW 60
           MK P+ FR  FGV N+G+ +  +L+ + G  G                            
Sbjct: 276 MKTPQNFRGTFGVLNVGMLVIVVLYILVGFFG---------------------------- 307

Query: 61  PTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPL 120
                         Y+KYG DA  SITLN+  D  +AQ +K+++A+ +F TY LQ +VP+
Sbjct: 308 --------------YIKYGPDASGSITLNLPMDAVMAQSIKVMFAVAIFITYALQAYVPV 353

Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
           E++W  Y+   +    ++ KL  EY+ R L+ L T+  A+ +P L L ISLFGA CL++L
Sbjct: 354 EIIWTTYLDHRI----KKNKLFWEYIVRTLVTLTTFILAIAVPRLGLFISLFGALCLSAL 409

Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
           GI FPA I I VL      FG     L KDI LI FG   ++ GT +SL DI  + Q
Sbjct: 410 GIAFPAIIEICVLWPHN--FGPFKVALIKDIGLIIFGCIGLIVGTYVSLGDIIASFQ 464

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025159|gb|EGI65339.1| Proton-coupled amino acid transporter 4 [Acromyrmex echinatior]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 133/240 (55%), Gaps = 19/240 (7%)

Query: 4   PKKFRQPFGVF-NIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCT--- 59
           P   R+ FG   N  ++    LFA+  +   +   N        N+ + Q    YC    
Sbjct: 265 PISDREMFGTLRNFSLYFGTTLFALEAVGVIIALEN--------NMKTPQNFGGYCGVLN 316

Query: 60  --WPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNF 117
                 V    + GL GY+KYG+DA+ S+T N+ SD+ +AQ +K+++A+ +F TY LQ +
Sbjct: 317 IGMTVIVILYIAIGLFGYIKYGSDAKGSVTFNLPSDEAMAQSIKIMFAIAIFITYALQAY 376

Query: 118 VPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCL 177
           VP+E+LW  Y+  H IQ     K++ EY  R  + L+T+  A+ IP L L ISLFGA CL
Sbjct: 377 VPVEILWTTYL-DHRIQ---NHKILWEYACRTFVTLVTFILAIAIPRLGLFISLFGALCL 432

Query: 178 ASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
           ++LGI FPA I I V   E   FG    +L K++ LI FGL  +V GT +S+++I  + +
Sbjct: 433 SALGIAFPAIIDICVSWPEN-DFGPFKIMLIKNLLLIVFGLLGLVVGTYVSIVEIIKSFK 491

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861318|ref|XP_003706133.1| PREDICTED: proton-coupled amino acid transporter 1-like [Megachile rotundata]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 112/167 (67%), Gaps = 5/167 (2%)

Query: 71  GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
           G  GY+KYG+ A  SIT N+ SD+ +AQ +++++A+ +F T+ LQ +VP+E++W  Y+ Q
Sbjct: 306 GFFGYVKYGDKAGGSITFNLRSDEVMAQSIRIMFAIAIFITHALQGYVPVEIIWNTYLDQ 365

Query: 131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
            +    +++K+  EYV R +I LIT+  A+ +P L L ISLFGA CL++LGI FPA I I
Sbjct: 366 KI----QKRKIFWEYVCRTVITLITFTLAVAVPRLGLFISLFGALCLSALGIAFPAIIEI 421

Query: 191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
            VL  ER  FG    +L K+I LI FGL  +V GT +S++DI  + +
Sbjct: 422 CVLWPER-EFGPCMIMLLKNICLIVFGLLGLVIGTYVSIVDIVNSFK 467

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605423|gb|EHJ64611.1| hypothetical protein KGM_21586 [Danaus plexippus]

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 9/226 (3%)

Query: 8   RQPFGVFN-IGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHF 66
           R+PF  F  +  F    +FA+ G+   M   N+ ++  T  I       T   +   V  
Sbjct: 288 RKPFAGFERLPTFFGTAIFALEGIGVVMPLENNMKTP-THFIGCPGVLNTGMFF--VVSL 344

Query: 67  EYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN 126
               G  GY+KYG+   +SITLN+  D+ L Q VKL+ A+ +FFTY LQ +VP+E++W N
Sbjct: 345 YAIVGFSGYLKYGDATGASITLNLPQDEVLGQSVKLMIAVAIFFTYSLQFYVPMEIIWKN 404

Query: 127 YIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPA 186
              +HM      KK I EY  R  IV++T   A+ IP+L   ISL GA CL+ LG+IFPA
Sbjct: 405 V--RHMFG---SKKNIAEYSIRIGIVIMTLCTAIAIPNLGPFISLVGAVCLSFLGLIFPA 459

Query: 187 TIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
            I  +       G G  NWVL+K++FLI FG+   ++G+ +S++DI
Sbjct: 460 VIETVTFWDRPNGLGRFNWVLWKNLFLICFGILGFLTGSYVSILDI 505

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204533|gb|EFN83213.1| Proton-coupled amino acid transporter 1 [Harpegnathos saltator]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 5/169 (2%)

Query: 69  STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYI 128
           + G  GY+KYG+ A  S+T N+  ++ +AQ +K+++A+ +F TY LQ +VP+E+LW  Y+
Sbjct: 304 AMGFFGYLKYGSAAAGSVTFNLPEEEIMAQSIKIMFAIAIFITYALQAYVPVEILWNTYL 363

Query: 129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATI 188
              +       KL  EYV R ++ L T+  A+ IP L L ISLFGA CL++LGI FPA I
Sbjct: 364 DHRV----RSGKLFWEYVCRTVVTLATFVLAITIPRLGLFISLFGALCLSALGIAFPAII 419

Query: 189 HILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
            I VL  +   FG L +++ K+I LI FGL  +V GT +S++DI  + +
Sbjct: 420 EICVLWPDN-DFGPLKFMMIKNILLIVFGLIGLVVGTYVSIVDIVNSFK 467

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402512|ref|XP_003486512.1| PREDICTED: proton-coupled amino acid transporter 1-like isoform 1 [Bombus impatiens] gi|350402515|ref|XP_003486513.1| PREDICTED: proton-coupled amino acid transporter 1-like isoform 2 [Bombus impatiens]

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 110/167 (65%), Gaps = 5/167 (2%)

Query: 71  GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
           G  GY+KYG+ A  S+T N+ +++ +AQ +K+++A+ +F T+ LQ +VP++++W  Y+ Q
Sbjct: 306 GFFGYIKYGSSASGSVTFNLPANEVMAQSIKIMFAIAIFITHALQGYVPVDIIWNTYLDQ 365

Query: 131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
            +    +++K+  EYV R +I L T+  A+ +P L L ISLFGA CL++LGI FPA I I
Sbjct: 366 KI----QKRKIFWEYVCRTVITLATFTLAITVPRLALFISLFGALCLSALGIAFPAIIEI 421

Query: 191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
            VL   R  FG    +  K+IFLI FGL  +V GT +S+++I  + +
Sbjct: 422 CVLWPNR-DFGPCMIMFIKNIFLIVFGLLGLVIGTYVSIVEIIRSFE 467

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799033|gb|EFZ20489.1| hypothetical protein SINV_04773 [Solenopsis invicta]

 Score =  136 bits (343), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 110/169 (65%), Gaps = 6/169 (3%)

Query: 68  YST-GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN 126
           YST G  GY +YG + ++SITLN   DQ LAQ  K++ A+ +F TY LQ +VP+E++W N
Sbjct: 314 YSTVGFFGYWRYGENTKASITLNPPQDQVLAQSAKIMIAIAIFLTYGLQFYVPMEIIWKN 373

Query: 127 YIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPA 186
                + QY   ++L+ EY+ R L+V+ T   A+ IP+L   ISL GA CL++LG++FP+
Sbjct: 374 -----LKQYFGSRRLLGEYLLRILLVIFTVCIAIAIPNLGPFISLVGAVCLSTLGLMFPS 428

Query: 187 TIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTA 235
            I ++ +  +  G G  NW L+K+I +IAFG+   ++GT +S+ +I  A
Sbjct: 429 AIELVTVWEQENGLGKWNWRLWKNIAIIAFGVLGFLTGTYVSIQEILEA 477

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66513394|ref|XP_393138.2| PREDICTED: proton-coupled amino acid transporter 1-like isoform 1 [Apis mellifera]

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 19/233 (8%)

Query: 6   KFRQPFGVF-NIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCT----- 59
           K R+ FG   N  ++    LFA+  +   +   N        N+ + Q    YC      
Sbjct: 243 KEREMFGTLRNFSLYFGTTLFALEAVGVIIALEN--------NMKTPQYFGGYCGVLNIG 294

Query: 60  WPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVP 119
               V      G  GY+KYG++ + S+T N+ S++ +AQ +K+++A+ +F T+ LQ +VP
Sbjct: 295 MTVIVALYIVMGFFGYIKYGSNVEGSVTFNLPSEEIMAQSIKIMFAIAIFITHALQGYVP 354

Query: 120 LELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLAS 179
           ++++W  Y+ Q +    +++K+  EYV R ++ L T+  A+ +P L L ISLFGA CL++
Sbjct: 355 VDIIWNTYLDQKI----QKRKIFWEYVCRTILTLSTFTLAITVPRLGLFISLFGALCLSA 410

Query: 180 LGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
           LGI FPA I I VL  +R   G    +L K++ LI FGL  +V GT +S++DI
Sbjct: 411 LGIAFPAIIEICVLWPDR-DLGPCMIMLVKNLLLIVFGLLGLVIGTYVSMVDI 462

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720657|ref|XP_003398750.1| PREDICTED: proton-coupled amino acid transporter 4-like isoform 1 [Bombus terrestris]

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 110/173 (63%), Gaps = 9/173 (5%)

Query: 68  YST-GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN 126
           YST G  GY +YG   ++SITLN   D+ LAQ  KL+ A+ +F TY LQ +VP+E++W N
Sbjct: 335 YSTVGFFGYWRYGEQTKASITLNPKQDEVLAQSAKLMIAVAIFLTYGLQFYVPMEIIWKN 394

Query: 127 YIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPA 186
                + QY   +KL+ EY+ R L+V+ T   A+ IP+L   ISL GA CL++LG++FP+
Sbjct: 395 -----LKQYFSSRKLLGEYLVRMLMVIFTVGVAIAIPNLGPFISLVGAVCLSTLGLMFPS 449

Query: 187 TIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQED 239
            I ++ +  +  G G   W L+K++ +I FG+   ++GT +S+ +I   I+ED
Sbjct: 450 VIELVTVWEQENGLGACYWRLWKNVAIILFGVLGFITGTYVSIQEI---IEED 499

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.633	0.348	0.401	1.2e-28
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.665	0.354	0.369	8.4e-25
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.637	0.316	0.369	3.4e-24
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.641	0.315	0.347	1e-23
FB|FBgn0052081	471	CG32081 [Drosophila melanogast	0.677	0.356	0.354	1.2e-23
FB|FBgn0033572	460	CG12943 [Drosophila melanogast	0.653	0.352	0.347	1.8e-23
WB|WBGene00020837	449	T27A1.5 [Caenorhabditis elegan	0.879	0.485	0.307	2.1e-22
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.657	0.343	0.349	1.6e-21
FB|FBgn0030816	468	CG16700 [Drosophila melanogast	0.689	0.365	0.363	5.5e-21
UNIPROTKB|Q495M3	483	SLC36A2 "Proton-coupled amino	0.637	0.327	0.331	2.3e-20

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 65/162 (40%), Positives = 101/162 (62%)

Query:    71 GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
             G  GY KYGN+++ SITLNI   +  AQVVK+ +A+  + +Y LQ +V   +LW  Y+ +
Sbjct:   290 GFFGYWKYGNESEGSITLNIPQSEIPAQVVKVFFAITTWISYALQGYVTAHILWDKYLAK 349

Query:   131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
                ++ E ++   E +FR +IVL+T+  A+ IP L + +SL G+FCL+ LG+IFP  + I
Sbjct:   350 ---RFKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFCLSILGLIFPVLLQI 406

Query:   191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
              V   E  G+G     L  ++ L+ FG+F  V GT +S++DI
Sbjct:   407 CVQYTE--GYGPFRIKLIINLLLLCFGIFGGVVGTYVSILDI 446

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 8.4e-25, P = 8.4e-25
 Identities = 62/168 (36%), Positives = 97/168 (57%)

Query:    71 GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
             GL GY+ YG+    SITLN+   + L+  VK + A  ++ T+ L  +V +++ W +Y+ +
Sbjct:   301 GLFGYLNYGSAVLGSITLNMPEHEVLSMCVKGMLAFAIYITHGLACYVAIDITWNDYVAK 360

Query:   131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
              +   ++R  L  EY  R  +VLIT+  A+ IP+L+L ISLFGA CL++LG+ FPA I I
Sbjct:   361 RL--GAQRNALFWEYAVRTGLVLITFLLAVAIPNLELFISLFGALCLSALGLAFPALIQI 418

Query:   191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQE 238
                 +   GF  + W++  +  LI  G+  +V GT  SL +I     E
Sbjct:   419 CTHWYNTKGFAKV-WLVLSNFVLIIVGILGLVIGTYTSLKEIVLTFSE 465

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 3.4e-24, P = 3.4e-24
 Identities = 61/165 (36%), Positives = 97/165 (58%)

Query:    71 GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
             G  GY++YG+    SITLN+  ++  AQ VK+L +L V+ T+ LQ FV LE++W + IK+
Sbjct:   334 GFLGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIW-DGIKE 392

Query:   131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
                   +++  +V YV R ++V      A+ +P +   + L GAFC + LG+IFP  I +
Sbjct:   393 KC----KKRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMGLIGAFCFSILGLIFPVVIEL 448

Query:   191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTA 235
             +V  H   GFG  NW+L+K+  +   G+  +V GT  ++ DI  A
Sbjct:   449 IV--HWESGFGKYNWILWKNAIITLCGIGALVFGTQAAIKDIVKA 491

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 57/164 (34%), Positives = 95/164 (57%)

Query:    69 STGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYI 128
             + G  GY+KYG   + SITLN+     L+Q+V++  A+ +F +Y LQ +VP+ ++   ++
Sbjct:   340 AVGFFGYLKYGEHVEGSITLNLPQGDTLSQLVRISMAVAIFLSYTLQFYVPVNIV-EPFV 398

Query:   129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATI 188
             + H    + R K +   V R ++V  T+  A  IP+L  +ISL GA   ++L +I P  I
Sbjct:   399 RSHFD--TTRAKDLSATVLRVVLVTFTFLLATCIPNLGSIISLVGAVSSSALALIAPPII 456

Query:   189 HILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232
              ++   +  +G+G  NW+L+KD+ ++ FGL   V GT  SL  I
Sbjct:   457 EVITFYN--VGYGRFNWMLWKDVLILIFGLCGFVFGTWASLAQI 498

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0052081 CG32081 [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 61/172 (35%), Positives = 98/172 (56%)

Query:    64 VHFEYST-GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLEL 122
             V   Y T GL GY +YG++   SI+LNI +D+ L+QV K   A  +F TYPL  FV +++
Sbjct:   259 VIISYVTFGLMGYWRYGDETAGSISLNIPTDEVLSQVAKGFIAAAIFLTYPLAGFVIIDI 318

Query:   123 LWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGI 182
             +  ++  ++    +   K   E + R   V++    A++ P+L  L+SL GA  ++ L +
Sbjct:   319 IMNHFWNKNGDLPNAALK---ESILRACTVVLICITAIIAPNLGPLLSLVGALTISLLNL 375

Query:   183 IFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFT 234
             +FPA I I +       +G L WVL KDIF +  G+ ++V GTV S+ D+ +
Sbjct:   376 VFPALIEICLYYPPEYNYGKLKWVLVKDIFYVIVGILILVQGTVFSIKDMIS 427

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

FB|FBgn0033572 CG12943 [Drosophila melanogaster (taxid:7227)]

 Score = 274 (101.5 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/167 (34%), Positives = 98/167 (58%)

Query:    71 GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
             G+ GY ++G++  +SITLNI  D+ L+Q +K+  A  +F +YPL  FV + +++ +Y   
Sbjct:   293 GIIGYWRFGDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNGFVVITVMFSDYENS 352

Query:   131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
                +   R + ++EYV R L + +T A A+ +P+L  L  L GAF L++L ++ PA I +
Sbjct:   353 ---EPRGRYRTLIEYVVRLLFLFLTGAVAIGVPNLAALTELEGAFSLSNLNLLCPALIDV 409

Query:   191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQ 237
              +  +  +G+G L W L +DI LI  GL   + G  ++LM +    Q
Sbjct:   410 FL--NYNVGYGRLMWKLIRDILLILIGLIFGIVGCTVALMQLIRDFQ 454

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0005615 "extracellular space" evidence=IDA

GO:0032504 "multicellular organism reproduction" evidence=IEP

WB|WBGene00020837 T27A1.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 264 (98.0 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 71/231 (30%), Positives = 122/231 (52%)

Query:    11 FG-VFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYS 69
             FG V N+ +F   ++FA  G+   +   N     I   I  +    T C     V+   +
Sbjct:   229 FGAVENLPLFFGTVMFAFEGVAVVLPIENQMNEPIHF-ITPNGVLNTSCILVLLVYM--T 285

Query:    70 TGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIK 129
              G  G+++YGND + ++TLN+       Q +K+++ L +  +YPLQ +VP+E +   +IK
Sbjct:   286 VGFFGFLRYGNDIKDTLTLNLPQTP-FYQAIKVMFVLCILVSYPLQFYVPMERV-EKWIK 343

Query:   130 QHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIH 189
             + +++ ++++ +I  Y  R   VL+T A A +IPHL L ISL G+    SL ++FP  I 
Sbjct:   344 RKVVE-AKQEPMI--YAIRFGGVLLTCAMAQLIPHLALFISLVGSVAGTSLTLVFPPLIE 400

Query:   190 ILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAI-QED 239
             +L    ++       WV  ++I L+AF +    +GT  S++ I  A  +ED
Sbjct:   401 LLCSYSKQ---ELTKWVWIRNIGLMAFAMVGFTTGTYASMVQIIEAFGKED 448

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 59/169 (34%), Positives = 92/169 (54%)

Query:    71 GLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ 130
             G  GY+++G+  + SITLN+     L    KLL A+ + FT+ LQ +VP E+LW      
Sbjct:   311 GFFGYVRFGDQVRGSITLNLPEGAWLGDTAKLLMAVAILFTFGLQFYVPNEILWRKI--S 368

Query:   131 HMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHI 190
             H  ++S  K  I + + R  I+L++   A  IP+L+  ISL GA   + LGI  P+ +  
Sbjct:   369 H--KFSPEKHNITQILLRSGIILLSGGVAAAIPNLEPFISLVGAVFFSLLGIFVPSFVET 426

Query:   191 LVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQED 239
             + L  +R+G     W L K+IFL  F +  +V+G V S+ +I     +D
Sbjct:   427 VYLWPDRLGV--CKWKLVKNIFLGVFSILALVAGAVASINEIIEMYSDD 473

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0030816 CG16700 [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 65/179 (36%), Positives = 96/179 (53%)

Query:    64 VHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELL 123
             V F ++ G  GYMK+G     S+TLN+  D  LAQ VKL+ +  V   YPLQ FV ++++
Sbjct:   297 VMFMFA-GSVGYMKWGEQVGGSLTLNLG-DTILAQAVKLMVSAGVLLGYPLQFFVAIQIM 354

Query:   124 WVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGII 183
             W N  KQ M    E + L+ E  FR  +VL+T A A ++P L L ISL GA C  +L ++
Sbjct:   355 WPN-AKQ-MCGI-EGRSLLGELGFRTFMVLVTLAIAEMVPALGLFISLIGALCSTALALV 411

Query:   184 FPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAI-QEDFH 241
             FP  I ++       G G   W+  K++ ++   L    +G+  SL  I     +E+ H
Sbjct:   412 FPPVIELISRSELNKGPGI--WICVKNLVILVLALLGFFTGSYESLKQIVKHFGEEEVH 468

GO:0015495 "gamma-aminobutyric acid:hydrogen symporter activity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q495M3 SLC36A2 "Proton-coupled amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 56/169 (33%), Positives = 90/169 (53%)

Query:    74 GYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMI 133
             GY+++G+D ++SI+LN+ +   L Q VKLLY   +  TY LQ +VP E++    I   + 
Sbjct:   317 GYLRFGDDIKASISLNLPNCW-LYQSVKLLYIAGILCTYALQFYVPAEII----IPFAIS 371

Query:   134 QYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVL 193
             + S R  L ++   R ++V +T   A++IP LDL+ISL G+    +L +I P  + +   
Sbjct:   372 RVSTRWALPLDLSIRLVMVCLTCLLAILIPRLDLVISLVGSVSGTALALIIPPLLEVTTF 431

Query:   194 RHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHP 242
               E    G     +FKD  +   G    V GT  +L ++  +  ED HP
Sbjct:   432 YSE----GMSPLTIFKDALISILGFVGFVVGTYQALDELLKS--EDSHP 474

GO:0016021 "integral to membrane" evidence=IEA

GO:0005280 "hydrogen:amino acid symporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IMP

GO:0035524 "proline transmembrane transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-20

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 89.3 bits (222), Expect = 1e-20
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 42/230 (18%)

Query: 1   MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTW 60
           MK P KF+    V    I +  +L+ + GL GY+ +GN+ + +I LN             
Sbjct: 219 MKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLN------------- 265

Query: 61  PTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPL 120
                                                    LL  L +  +YPLQ F   
Sbjct: 266 -----------------LPKSDWLIDI------------ANLLLVLHLLLSYPLQAFPIR 296

Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
           +++     ++        K  ++  V R  +V+IT+  A+ +P L   +SL GA   A L
Sbjct: 297 QIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPL 356

Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLM 230
             I P   H+ + + ++     L      D+  I  GL +M  G    ++
Sbjct: 357 TFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG1304|consensus	449		100.0
PLN03074	473	auxin influx permease; Provisional	99.95
PTZ00206	467	amino acid transporter; Provisional	99.95
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.92
KOG4303|consensus	524		99.92
KOG1303|consensus	437		99.91
KOG1305|consensus	411		99.87
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	98.63
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	97.93
KOG1303|consensus	437		97.92
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.27
KOG1304|consensus	449		97.21
KOG1305|consensus	411		97.15
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	96.96
PTZ00206	467	amino acid transporter; Provisional	96.72
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	96.49
PRK10655	438	potE putrescine transporter; Provisional	96.49
PRK10644	445	arginine:agmatin antiporter; Provisional	96.23
PRK13629	443	threonine/serine transporter TdcC; Provisional	96.19
PRK10249	458	phenylalanine transporter; Provisional	96.17
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	96.09
TIGR00909	429	2A0306 amino acid transporter.	95.97
PRK15132	403	tyrosine transporter TyrP; Provisional	95.83
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	95.69
TIGR00814	397	stp serine transporter. The HAAAP family includes	95.54
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	95.5
KOG1287|consensus	479		95.27
PRK15049	499	L-asparagine permease; Provisional	95.17
PRK10238	456	aromatic amino acid transporter; Provisional	95.17
PRK10746	461	putative transport protein YifK; Provisional	95.08
PLN03074	473	auxin influx permease; Provisional	95.01
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	94.97
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	94.69
PRK11387	471	S-methylmethionine transporter; Provisional	94.64
PRK11021	410	putative transporter; Provisional	94.61
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	94.6
PRK11357	445	frlA putative fructoselysine transporter; Provisio	94.58
PRK10483	414	tryptophan permease; Provisional	94.37
PRK10197	446	gamma-aminobutyrate transporter; Provisional	94.37
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	94.28
COG0531	466	PotE Amino acid transporters [Amino acid transport	93.68
TIGR00911	501	2A0308 L-type amino acid transporter.	93.39
PRK09664	415	tryptophan permease TnaB; Provisional	93.33
TIGR00907	482	2A0304 amino acid permease (GABA permease).	93.02
PRK10580	457	proY putative proline-specific permease; Provision	92.79
TIGR00906	557	2A0303 cationic amino acid transport permease.	92.55
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	91.32
TIGR00913	478	2A0310 amino acid permease (yeast).	90.56
PRK10836	489	lysine transporter; Provisional	89.83
PRK15238	496	inner membrane transporter YjeM; Provisional	88.77
TIGR00912	359	2A0309 spore germination protein (amino acid perme	84.64
TIGR00930	953	2a30 K-Cl cotransporter.	84.25
KOG4303|consensus	524		83.66

>KOG1304|consensus

Probab=100.00  E-value=2.1e-37  Score=276.30  Aligned_cols=183  Identities=42%  Similarity=0.805  Sum_probs=171.1

Q ss_pred             CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccccccccccccccchhhhhhhhhhhhccccccC
Q psy9719           1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGN   80 (248)
Q Consensus         1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~gYl~fG~   80 (248)
                      |||||+|++|+|+|+.+|.+++++|+.+|++||+.||+++                                        
T Consensus       267 Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v----------------------------------------  306 (449)
T KOG1304|consen  267 MKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV----------------------------------------  306 (449)
T ss_pred             ccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccc----------------------------------------
Confidence            9999999999999999999999999999998888888877                                        


Q ss_pred             cccchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q psy9719          81 DAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAM  160 (248)
Q Consensus        81 ~~~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~  160 (248)
                        ++.|+.|+|+ +++.+.+|+++++++.+|||||+||+.+++|+. +++|.   +++++++..+.+|..++++++++|.
T Consensus       307 --~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-i~~k~---~~~~~~~~~~~~R~~lVllt~~iA~  379 (449)
T KOG1304|consen  307 --KGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-IRKKF---SENRKKLLEYALRVFLVLLTFLIAV  379 (449)
T ss_pred             --cceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-HHHhc---CcchhHHHHHHHHHHHHHHHHHHHH
Confidence              9999999996 999999999999999999999999999999999 77766   3455678899999999999999999


Q ss_pred             hccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9719         161 VIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI  232 (248)
Q Consensus       161 ~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l  232 (248)
                      .+|+++.++||+||++++.+.+++|+++++..++.+.+  +..+|+.+.|.+++++|+++++.|||.++.++
T Consensus       380 ~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~--~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  380 AVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK--GRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc--CceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999999999999999999998865  45679999999999999999999999999864

>PLN03074 auxin influx permease; Provisional

Probab=99.95  E-value=2.3e-27  Score=217.95  Aligned_cols=186  Identities=17%  Similarity=0.247  Sum_probs=146.6

Q ss_pred             CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccccccccccccccchhhhhhhhhhhhccccccC
Q psy9719           1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGN   80 (248)
Q Consensus         1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~gYl~fG~   80 (248)
                      ||||++|++   ++..++.+++.+|..+|+.||+.||+++                                        
T Consensus       259 M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~----------------------------------------  295 (473)
T PLN03074        259 MWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDEL----------------------------------------  295 (473)
T ss_pred             ccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhh----------------------------------------
Confidence            677777777   6666777777777766666666666654                                        


Q ss_pred             ccc--chhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHH
Q psy9719          81 DAQ--SSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAF  158 (248)
Q Consensus        81 ~~~--~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~l  158 (248)
                        +  ++.+.|+|+ +.+.+++++++.++++.+||+++.|..+..|+. ...+     .++..+.|.++|+.+++.++++
T Consensus       296 --~~~s~~l~~lp~-~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~-~~~~-----~~k~~~~r~~~R~~lv~~~~~i  366 (473)
T PLN03074        296 --LTHSNAFSLLPR-SGWRDAAVILMLIHQFITFGFACTPLYFVWEKA-IGVH-----DTKSICLRALARLPVVVPIWFL  366 (473)
T ss_pred             --hhchhHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hccc-----ccccHHHHHHHHHHHHHHHHHH
Confidence              4  455677884 446799999999999999999999988887776 4322     2334567899999999999999


Q ss_pred             HHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccC----------CCcchHHHHHhHHHHHH-HHHHHHHHHHH
Q psy9719         159 AMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIG----------FGFLNWVLFKDIFLIAF-GLFVMVSGTVI  227 (248)
Q Consensus       159 A~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~----------~~~~~~~~~~~~~~i~~-Gi~~~v~gt~~  227 (248)
                      |+.+|+|+++++|+||+++++++|++|+++|++.++++..+          .++.+|..+.|++++++ |+++.+.|+|.
T Consensus       367 A~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~a  446 (473)
T PLN03074        367 AIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWA  446 (473)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHH
Confidence            99999999999999999999999999999999977654110          01223357899999985 66667999999


Q ss_pred             HHHHHHHHhcc
Q psy9719         228 SLMDIFTAIQE  238 (248)
Q Consensus       228 si~~l~~~~~~  238 (248)
                      |++++++++++
T Consensus       447 si~~ii~~~~~  457 (473)
T PLN03074        447 SMTNFVRQIDT  457 (473)
T ss_pred             HHHHHHHhhhh
Confidence            99999999987

>PTZ00206 amino acid transporter; Provisional

Probab=99.95  E-value=6.9e-28  Score=221.77  Aligned_cols=203  Identities=14%  Similarity=0.181  Sum_probs=161.3

Q ss_pred             HHHHHHhhhhhhhccccccchhhcccccccccc--ccccchhh--hhhhhhhhhccccccCcccchhhhcc-CCCchHHH
Q psy9719          24 LFAITGLCGYMKYGNDAQSSITLNIASDQKRKT--YCTWPTFV--HFEYSTGLCGYMKYGNDAQSSITLNI-ASDQKLAQ   98 (248)
Q Consensus        24 ~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~y~~~g~~gYl~fG~~~~~~il~n~-p~~~~~~~   98 (248)
                      ....+|++.+++.+|....|++++++++.+++.  ...++...  ++|..+|++||++||++++++++.|+ |.+|....
T Consensus       258 ~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~  337 (467)
T PTZ00206        258 AIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIM  337 (467)
T ss_pred             HHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhh
Confidence            345678888888899988888888776443332  33333333  37999999999999999999999999 56788899


Q ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHH
Q psy9719          99 VVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLA  178 (248)
Q Consensus        99 ~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~  178 (248)
                      ++++++.+.++++||++.+|+|+.+++. +..+.    ++.+.+++...+..++++++++|+++|+++.+++++||++++
T Consensus       338 v~~~~~~~~v~~sypL~~~p~r~~i~~~-~~~~~----~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~  412 (467)
T PTZ00206        338 VGFVGVLVKLFVSYALLGMACRNALYDV-IGWDA----RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGG  412 (467)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHH-hCCCc----ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence            9999999999999999999999999887 43221    223345666667777788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9719         179 SLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIF  233 (248)
Q Consensus       179 ~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~  233 (248)
                      .++|++|++||++......+  +..+++.+.+++++++|++..+.|||+++.+.+
T Consensus       413 ~l~fi~P~lf~l~~~~~~~~--~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        413 LLGFILPALLFMYSGGFTWQ--KVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHhcCCccHH--hhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999984211111  112345578999999999999999999999876

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.92  E-value=2.5e-26  Score=207.64  Aligned_cols=204  Identities=23%  Similarity=0.407  Sum_probs=169.6

Q ss_pred             HHHHHHHhhhhhhhccccccchhhcccccccccc---ccccchhh--hhhhhhhhhccccccCcccchhhhccCCCchHH
Q psy9719          23 MLFAITGLCGYMKYGNDAQSSITLNIASDQKRKT---YCTWPTFV--HFEYSTGLCGYMKYGNDAQSSITLNIASDQKLA   97 (248)
Q Consensus        23 ~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~   97 (248)
                      -....+|++.|++.+|....|++.+++++.+.+.   ...++...  .+|..+|.+||++||+++++|++.|+|+++++.
T Consensus       193 ~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~  272 (409)
T PF01490_consen  193 GFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLI  272 (409)
T ss_pred             HHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCccccc
Confidence            3556788889999999999999999998888553   33333333  479999999999999999999999999877899


Q ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHhhh-----hccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHh
Q psy9719          98 QVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQH-----MIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLF  172 (248)
Q Consensus        98 ~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sli  172 (248)
                      .++++++.++++++||++.+|.++.+++. +.++     .....+..++++|...|+.++..+.++|+.+|+++++++++
T Consensus       273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~  351 (409)
T PF01490_consen  273 IIARILLVISLLLSYPLQLFPARNSLENL-LFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLV  351 (409)
T ss_pred             ccccccchhhhhhccccccchhHhhhhhh-eeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhccc
Confidence            99999999999999999999999999998 4432     10011233457789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccccCCCcchH--HHHHhHHHHHHHHHHHHHHHHHHH
Q psy9719         173 GAFCLASLGIIFPATIHILVLRHERIGFGFLNW--VLFKDIFLIAFGLFVMVSGTVISL  229 (248)
Q Consensus       173 Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~--~~~~~~~~i~~Gi~~~v~gt~~si  229 (248)
                      ||++++.++|++|+++|++.+++++.  +..++  +...+++++++|++.++.|+|.++
T Consensus       352 Ga~~~~~i~fi~P~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  352 GALFGSFISFILPALLYLKLFKRKRN--SFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             chHHHHhHHHHHHHHHHHHhhccccc--ccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            99999999999999999999888753  11122  236688999999999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303|consensus

Probab=99.92  E-value=1.1e-26  Score=198.60  Aligned_cols=205  Identities=24%  Similarity=0.365  Sum_probs=174.5

Q ss_pred             Hhhhhhhhccccccchhhccccccccccccccchhhh--hhhhhhhhccccccCcccchhhhccCCCchHHHHHHHHHHH
Q psy9719          29 GLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVH--FEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYAL  106 (248)
Q Consensus        29 g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i~~~l  106 (248)
                      |...|.|--+-..+++|.||.++.|.+.+..|+.+++  +-..+|..||++|+++|+..|++|+| ++....+++++..+
T Consensus       309 G~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~  387 (524)
T KOG4303|consen  309 GMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVV  387 (524)
T ss_pred             EEEEEeeeceeeccccccccCChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHH
Confidence            3444444455567899999999999999999998775  56899999999999999999999999 57889999999999


Q ss_pred             HHHHHhccccchHHHHHHHHHHhhhhcc------cccc-chhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHH
Q psy9719         107 VVFFTYPLQNFVPLELLWVNYIKQHMIQ------YSER-KKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLAS  179 (248)
Q Consensus       107 ~~~~s~pL~~~p~~~~~~~~~l~~~~~~------~~~~-~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~  179 (248)
                      ..++||||..+.+.+.+|+. +++..++      ++.+ .-+-+...+|+++++++.++|+++|+|..+++++|++.++.
T Consensus       388 KALLSYPLPfyAAvelLe~n-lF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtm  466 (524)
T KOG4303|consen  388 KALLSYPLPFYAAVELLENN-LFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTM  466 (524)
T ss_pred             HHHHcCCchHHHHHHHHHHh-hhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhccccccc
Confidence            99999999999999999998 4432222      1111 11234457899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy9719         180 LGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDF  240 (248)
Q Consensus       180 l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~~~~~~  240 (248)
                      ++|+.|++||+++.++...     ..++..+..++++|...++.|.|.|..++++.++++.
T Consensus       467 LsFiwP~lFHl~ik~~~L~-----~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~  522 (524)
T KOG4303|consen  467 LSFIWPALFHLYIKEKTLN-----NFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD  522 (524)
T ss_pred             HHHHHHHHHHHHHHHHhhh-----hHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence            9999999999999887642     3578899999999999999999999999999998653

>KOG1303|consensus

Probab=99.91  E-value=6.3e-24  Score=192.10  Aligned_cols=203  Identities=19%  Similarity=0.351  Sum_probs=170.8

Q ss_pred             HHHHHhhhhhhhccccccchhhccccccccccccccch--hhhhhhhhhhhccccccCcccchhhhccCCCchHHHHHHH
Q psy9719          25 FAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPT--FVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKL  102 (248)
Q Consensus        25 y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i  102 (248)
                      +.++|..+|.|-||.+.+|++..|+++.+++.....+.  ++.+|+.+++.||++|||+++++++.|++++.|+...+++
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani  310 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANI  310 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHH
Confidence            88999999999999999999999999999776555443  3457999999999999999999999999656899999999


Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHHHHH
Q psy9719         103 LYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGI  182 (248)
Q Consensus       103 ~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~f  182 (248)
                      ++.+|++.++++...|..+.+|+. ...+.++. .++....|.+.|+.+++.++++|+.+|+|+++++++||+...++++
T Consensus       311 ~i~~h~i~s~~i~a~pl~~~~E~~-~~~~~~~~-~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~  388 (437)
T KOG1303|consen  311 LIVLHLIGSYQIYAQPLFDVVEKL-IGVKHPDF-KKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTF  388 (437)
T ss_pred             HHHHHHhhhhhhhhcchHHHHHHH-hccCCccc-cccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999998 55433111 1134568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccCCCcchHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy9719         183 IFPATIHILVLRHERIGFGFLNWVLFKDIFL-IAFGLFVMVSGTVISLMDIFT  234 (248)
Q Consensus       183 i~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~-i~~Gi~~~v~gt~~si~~l~~  234 (248)
                      ++|+++|+...+.++.   ..+|  ..++.+ +++|++.++.....++++++.
T Consensus       389 ilP~~~yl~~~k~~~~---s~~~--~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  389 ILPCLMYLLIKKPKRF---SPKW--LLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHHHHHHHhhhhhhh---hHHH--HHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999999999665432   1233  445555 788888888888888887764

>KOG1305|consensus

Probab=99.87  E-value=1.9e-21  Score=175.08  Aligned_cols=199  Identities=17%  Similarity=0.268  Sum_probs=159.7

Q ss_pred             HHHHHHhhhhhhhccccccchhhccccccccccccccchh--------hhhhhhhhhhccccccCcccchhhhccCCCch
Q psy9719          24 LFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTF--------VHFEYSTGLCGYMKYGNDAQSSITLNIASDQK   95 (248)
Q Consensus        24 ~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~   95 (248)
                      ++..+.++.+++..|..    -.+.++|+|+++..++..+        .++|+.+|.+||++|||++++|++.++|+++.
T Consensus       196 ~~~~~pi~~faf~Ch~n----~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~  271 (411)
T KOG1305|consen  196 LFYALPIFVFAFTCHSN----VFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILN  271 (411)
T ss_pred             hhhhhhhhheeeecccc----ceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccc
Confidence            34445666677766666    3445555666655544322        24799999999999999999999999997543


Q ss_pred             H------HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy9719          96 L------AQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLI  169 (248)
Q Consensus        96 ~------~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~  169 (248)
                      .      ...+|..++++.+.++|++.+|+|..+++..++ +.+++ ...+..+++.++..++..+.+.|+++|++++++
T Consensus       272 ~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~-~~~~~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~  349 (411)
T KOG1305|consen  272 NLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP-YQPGL-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIF  349 (411)
T ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc-cCCCC-CCccceehhHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3      589999999999999999999999998888343 33111 123456788999999999999999999999999


Q ss_pred             hHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9719         170 SLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTA  235 (248)
Q Consensus       170 sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~  235 (248)
                      +++||++++.++|++|+++|++..|+ .      .+++...+...++|+...+.|+...+.++..+
T Consensus       350 ~~vGAT~~~~i~FI~P~~~yl~~~~~-~------~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  350 GFVGATSSTSISFILPALYYLKASKK-K------SREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHhhhhhhhhhHHHHHHHhhheeecc-c------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999876 2      34567788899999999999999999998865

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=98.63  E-value=4.9e-07  Score=82.42  Aligned_cols=159  Identities=15%  Similarity=0.137  Sum_probs=101.5

Q ss_pred             hhhhhhhhhccccccCcccchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHH---H------Hhhhh--c
Q psy9719          65 HFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN---Y------IKQHM--I  133 (248)
Q Consensus        65 ~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~---~------l~~~~--~  133 (248)
                      ++|.++++++|..+|+++.++++.+.++ +.....++.....+...++|.+.++.+...-+.   +      +.+..  +
T Consensus       240 vlyi~~~~~~~~~~~~~~~~~il~~~~~-~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~  318 (415)
T COG0814         240 VLYILVGFFVFGCFGSLVFGNILAAKEQ-NISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS  318 (415)
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHccCc-hHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc
Confidence            3567777777777777779999999984 444444555555555577777777776543221   0      11100  0


Q ss_pred             cccc-cchhhHH--HHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHh
Q psy9719         134 QYSE-RKKLIVE--YVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKD  210 (248)
Q Consensus       134 ~~~~-~~~~~~~--~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~  210 (248)
                      +..+ ++..+.+  .......+.....++...|..+.+++.+|+.....+.++.|...+.+....+..     +..+..+
T Consensus       319 ~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~-----~g~~~~~  393 (415)
T COG0814         319 NSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY-----GGNFLLL  393 (415)
T ss_pred             cCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec-----CCCchhH
Confidence            1011 1122222  233445556666788889999999999999999999999998877766554421     1112468


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy9719         211 IFLIAFGLFVMVSGTVISL  229 (248)
Q Consensus       211 ~~~i~~Gi~~~v~gt~~si  229 (248)
                      .+++++|+..+..-.+.+.
T Consensus       394 ~~v~~~Gi~~~~~~~~~~~  412 (415)
T COG0814         394 LLVLLFGILVILSPFLATF  412 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8888999888877666543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=97.93  E-value=6.5e-05  Score=67.58  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             chHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchh-HHHhHh
Q psy9719          94 QKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLD-LLISLF  172 (248)
Q Consensus        94 ~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~-~v~sli  172 (248)
                      .+...+..++-.+++..|+.-.....+|.+.+. +++.    +++   ..|.....+..+...++|.+.|+.. ..++..
T Consensus       266 ~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~-~~~~----~~~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~  337 (381)
T TIGR00837       266 SAIELALELFSNFALASSFLGVTLGLFDYLADL-FKFD----DSK---KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYA  337 (381)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC----ccc---CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHH
Confidence            456677777778888888877777777776555 4321    112   1244445556677778899999976 889999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         173 GAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       173 Ga~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      | +++..+.+++|++++++.++++
T Consensus       338 G-~~~~~~~~~~p~l~~~~~r~~~  360 (381)
T TIGR00837       338 G-LAATIWAVIIPALLAWKARKKF  360 (381)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhcC
Confidence            9 8899999999999999977654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>KOG1303|consensus

Probab=97.92  E-value=0.00013  Score=66.84  Aligned_cols=38  Identities=26%  Similarity=0.628  Sum_probs=36.9

Q ss_pred             CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccc
Q psy9719           1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQ   41 (248)
Q Consensus         1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~   41 (248)
                      ||+|++|++   ++.+|+.+++.+|...+++||+.||+.+.
T Consensus       254 Mk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~  291 (437)
T KOG1303|consen  254 MKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVP  291 (437)
T ss_pred             cCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence            899999999   99999999999999999999999999994

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.27  E-value=0.0079  Score=54.63  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-h
Q psy9719          87 TLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-L  165 (248)
Q Consensus        87 l~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~  165 (248)
                      +.+...+.+...++.+.-.+++..||-=...-.+|.+.+. ++.+       ++...|........+-..++|...|+ |
T Consensus       265 ~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~k~~-------~~~~~r~~~~~ltf~ppl~~a~~~p~~F  336 (394)
T PF03222_consen  265 LANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-FKLK-------NNSSGRLKTWLLTFLPPLIFALLFPNGF  336 (394)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC-------ccccchHHHHHHHHHhHHHHHHHCcHHH
Confidence            3344445677777888888888888766555667776665 4321       11122333344445556778888877 7


Q ss_pred             hHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcch--HHHHHhHHHHHHHHHHH
Q psy9719         166 DLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLN--WVLFKDIFLIAFGLFVM  221 (248)
Q Consensus       166 ~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~Gi~~~  221 (248)
                      -..+++.| ...+.+..++|+++.++.+++++.  ...+  .-+.....++++|++..
T Consensus       337 ~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~--~~~~~~gg~~~l~~~~~~~i~ii  391 (394)
T PF03222_consen  337 LIALGYAG-IGIAILLGILPALMVWKARKRKPK--QPYRVPGGNFTLLLVIIFGILII  391 (394)
T ss_pred             HHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCC--CCeEEeCcHHHHHHHHHHHHHHH
Confidence            88999999 899999999999999998766542  1111  12444555555565543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>KOG1304|consensus

Probab=97.21  E-value=0.0054  Score=56.07  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=107.7

Q ss_pred             HHHHHHhhhhhhhccccccchhhcccccccccc---cccc--chhhhhhhhhhhhccccccCcccchhhhccCCCchHHH
Q psy9719          24 LFAITGLCGYMKYGNDAQSSITLNIASDQKRKT---YCTW--PTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQ   98 (248)
Q Consensus        24 ~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~   98 (248)
                      +-..+|+..|++.|..+.-|+|++|++|+++..   +.+.  ..++++|..+|.+||++||    +++-.+.--|=+-  
T Consensus       243 ~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG----~~v~~sITLNLP~--  316 (449)
T KOG1304|consen  243 LPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG----DDVKGSITLNLPQ--  316 (449)
T ss_pred             hHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcc----ccccceEEecCCc--
Confidence            345678899999999999999999999999994   4333  4566789999999999997    6665544422222  


Q ss_pred             HHHHHHHHHHHHHhccccchHHHH--HHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhH
Q psy9719          99 VVKLLYALVVFFTYPLQNFVPLEL--LWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFC  176 (248)
Q Consensus        99 ~~~i~~~l~~~~s~pL~~~p~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~  176 (248)
                       ..+...+.+..+..+.+-=+.+.  .-+. +.+..   ..+.+..++.+.-..+-....++...+--.-.=++..=++.
T Consensus       317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI-i~~~i---~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLV  391 (449)
T KOG1304|consen  317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEI-IEPGI---RKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLV  391 (449)
T ss_pred             -cHHHHHHHHHHHHHHHHcCchhhhhhHHH-HHHhH---HHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHH
Confidence             44455566666555543222222  1222 33333   33333334455555666666666665555444444444455


Q ss_pred             HHHHHHHHHHHHHHHHhcccccCCCcchH---HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9719         177 LASLGIIFPATIHILVLRHERIGFGFLNW---VLFKDIFLIAFGLFVMVSGTVISLMDI  232 (248)
Q Consensus       177 ~~~l~fi~P~~~yl~~~~~~~~~~~~~~~---~~~~~~~~i~~Gi~~~v~gt~~si~~l  232 (248)
                      |+..+-.+--++ =-..+-.-   ....+   .++.-+.-+++-+++.+...+.+-..+
T Consensus       392 Gs~~~s~L~li~-P~liel~~---~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si  446 (449)
T KOG1304|consen  392 GSVSCSLLALIF-PPLIELIT---FYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSI  446 (449)
T ss_pred             HHHHHHHHHHHc-cHHHHHHH---hcccccCceehHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            555443332222 12222111   11122   235555555555555555555554443

>KOG1305|consensus

Probab=97.15  E-value=0.003  Score=57.56  Aligned_cols=91  Identities=20%  Similarity=0.373  Sum_probs=69.9

Q ss_pred             CCCCCC--CCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccccccccccccccchhhhhhhhhhhhccccc
Q psy9719           1 MKEPKK--FRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKY   78 (248)
Q Consensus         1 m~~P~~--f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~gYl~f   78 (248)
                      ||||++  ..+   +-..+....+.+|..+|.+||..||+++..++-.    .                          |
T Consensus       220 l~~~s~~~i~~---v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~----~--------------------------~  266 (411)
T KOG1305|consen  220 LKDRSVKKIQR---VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLH----N--------------------------Y  266 (411)
T ss_pred             eeCchHHHHHH---HHHHHHHHHHHHHHHHHHhhhheecccchHHHHh----c--------------------------C
Confidence            688886  777   8899999999999999999999999998333222    1                          1


Q ss_pred             cCcccchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q psy9719          79 GNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN  126 (248)
Q Consensus        79 G~~~~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~  126 (248)
                       ++...+.+.++|.+..-..++........+..+|+..+ ..+.+.+.
T Consensus       267 -~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~-l~~~~~~~  312 (411)
T KOG1305|consen  267 -DSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN-LDELLFPY  312 (411)
T ss_pred             -CcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHhccc
Confidence             12245566678876777888888888888999999998 66666655

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=96.96  E-value=0.00038  Score=62.89  Aligned_cols=52  Identities=31%  Similarity=0.728  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhcccccc
Q psy9719           1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQ   52 (248)
Q Consensus         1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~   52 (248)
                      ||||++|++...++..++.+++++|..+|.+||..||+++..++-.+..++.
T Consensus       218 m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~  269 (409)
T PF01490_consen  218 MKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD  269 (409)
T ss_pred             ccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence            8999999944449999999999999999999999999998555555544444

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PTZ00206 amino acid transporter; Provisional

Probab=96.72  E-value=0.00077  Score=62.53  Aligned_cols=45  Identities=24%  Similarity=0.460  Sum_probs=39.4

Q ss_pred             CCC--CCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhcc
Q psy9719           1 MKE--PKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNI   48 (248)
Q Consensus         1 m~~--P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~   48 (248)
                      |||  |++|.+   +++.++.+++++|..+|++||+.||++++.++-++.
T Consensus       282 M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~  328 (467)
T PTZ00206        282 MTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMY  328 (467)
T ss_pred             hcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhC
Confidence            666  668888   999999999999999999999999999977775554

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=96.49  E-value=0.14  Score=47.48  Aligned_cols=39  Identities=10%  Similarity=0.184  Sum_probs=22.9

Q ss_pred             HHHhccchhHHHhHhhhhH--HHHHHHHHHHHHHHHHhccc
Q psy9719         158 FAMVIPHLDLLISLFGAFC--LASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       158 lA~~iP~~~~v~sliGa~~--~~~l~fi~P~~~yl~~~~~~  196 (248)
                      +....|+.++.++.+.+.+  ...+.++++.+..+++++++
T Consensus       346 ~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~  386 (474)
T TIGR03813       346 LFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQ  386 (474)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3344677666565555443  33567788877776665443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10655 potE putrescine transporter; Provisional

Probab=96.49  E-value=0.18  Score=46.22  Aligned_cols=31  Identities=13%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRHER  197 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~  197 (248)
                      ++.+.++  +.....+.+.++.+.+++++++++
T Consensus       348 ~~~l~~~--~~~~~~i~y~~~~~~~~~lr~~~~  378 (438)
T PRK10655        348 FNVLVNL--AVVTNIIPYILSMAALVIIQKVAN  378 (438)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCC
Confidence            4444444  334456788899888888776653

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=96.23  E-value=0.28  Score=45.05  Aligned_cols=21  Identities=5%  Similarity=0.146  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccc
Q psy9719         176 CLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       176 ~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      .+..+.|++|.+..+++.+++
T Consensus       359 ~~~li~y~~~~~~~~~l~~~~  379 (445)
T PRK10644        359 IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC
Confidence            346788899999888876654

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=96.19  E-value=0.12  Score=47.53  Aligned_cols=124  Identities=18%  Similarity=0.162  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhh-h-hccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHh
Q psy9719          95 KLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ-H-MIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLF  172 (248)
Q Consensus        95 ~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sli  172 (248)
                      +......+.-.+++..||-=.....+|.+... ..+ . ..+..+..++..+....+++.+.++.+|..-|++=++++-+
T Consensus       314 ~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~  392 (443)
T PRK13629        314 TLEYAASIIALVAIFKSFFGHYLGTLEGLNGL-ILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM  392 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence            45666666666777777655555677877766 321 1 10101122344566777788899999999999999999977


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccccCCCcchHH-HHHhHHHHHHHHHHHHHHHH
Q psy9719         173 GAFCLASLGIIFPATIHILVLRHERIGFGFLNWV-LFKDIFLIAFGLFVMVSGTV  226 (248)
Q Consensus       173 Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~Gi~~~v~gt~  226 (248)
                      |+-..+.+.|++|...-.|.-.-+       +++ +..|+++++.|++....-.|
T Consensus       393 ~gPiia~il~l~P~y~i~kvp~l~-------~yr~~~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        393 GAPIIASLLCLLPMYAIRKAPSLA-------KYRGRLDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             hhHHHHHHHHHHHHHHHHccHHHH-------HhCCCchhHHHHHHHHHHHHHHHH
Confidence            777778888899987655543222       222 33478999999887665544

>PRK10249 phenylalanine transporter; Provisional

Probab=96.17  E-value=0.13  Score=47.64  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLR  194 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~  194 (248)
                      ++.+.++.  ..+..+.+++|++.+++.++
T Consensus       367 f~~l~~~~--~~~~~i~y~~~~~~~l~~r~  394 (458)
T PRK10249        367 FGLLMALV--VATLLLNWIMICLAHLRFRA  394 (458)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            44444432  23567899999999999875

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=96.09  E-value=0.32  Score=45.10  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=21.6

Q ss_pred             cchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      +.++.+.++.  .....+.|.++++.++++.+++
T Consensus       350 ~~~~~l~~~~--~~~~li~y~~~~~~~~~l~~~~  381 (468)
T TIGR03810       350 QAYNFAISLA--TSAILVPYLWSAAYQVKLSWRG  381 (468)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence            3455566653  3356788999999888886553

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00909 2A0306 amino acid transporter

Probab=95.97  E-value=0.17  Score=46.19  Aligned_cols=33  Identities=15%  Similarity=0.063  Sum_probs=19.4

Q ss_pred             ccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         162 IPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       162 iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      ..+++.+.++.  ..+..+.+++.++-.+++++++
T Consensus       345 ~~~~~~l~~~~--~~~~~~~y~~~~~a~~~lr~~~  377 (429)
T TIGR00909       345 LVPLEGLAELT--SIGTLIAFAAVNVAVIILRRRR  377 (429)
T ss_pred             HcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence            34567776653  3344566777766666665544

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=95.83  E-value=0.093  Score=47.83  Aligned_cols=121  Identities=13%  Similarity=0.099  Sum_probs=78.9

Q ss_pred             CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-hhHHHhH
Q psy9719          93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-LDLLISL  171 (248)
Q Consensus        93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~~~v~sl  171 (248)
                      +.+...++.+.-.+++..||-=.....+|.+... ++.+.       +...|.....+..+-.+++|..-|+ |...+++
T Consensus       268 ~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~~~~~-------~~~~r~~~~~l~flppli~a~~~P~~F~~al~~  339 (403)
T PRK15132        268 SPHVELAVHLFADLALATSFLGVALGLFDYLADL-FQRRN-------TVGGRLQTGLITFLPPLAFALFYPRGFVMALGY  339 (403)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCc-------cccCCchhehhhHHHHHHHHHHhHHHHHHHHHH
Confidence            4577777778777777777655555556666555 43211       1122455556677778889999888 6778888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccccCCCcch--HHHHHhHHHHHHHHHHHHHH
Q psy9719         172 FGAFCLASLGIIFPATIHILVLRHERIGFGFLN--WVLFKDIFLIAFGLFVMVSG  224 (248)
Q Consensus       172 iGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~Gi~~~v~g  224 (248)
                      .|. ..+.+.+++|+++-++.++++..  +.++  -.+..+++.+++|++..+.-
T Consensus       340 aG~-~~ail~~ilP~~m~~~~r~~~~~--~~y~v~gg~~~~~~v~~~G~~~i~~~  391 (403)
T PRK15132        340 AGV-ALAVLALLLPSLLVWQSRKQNPQ--AGYRVKGGRPALALVFLCGIAVIGIQ  391 (403)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHhhcCCC--CCccCCCChHHHHHHHHHHHHHHHHH
Confidence            775 57889999999999998765411  1111  02455677777777665543

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=95.69  E-value=1  Score=41.28  Aligned_cols=29  Identities=14%  Similarity=0.054  Sum_probs=18.0

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      ++.+.++.  +....+.+++.++.++|.+++
T Consensus       351 ~~~l~~~~--~~~~l~~y~~~~~~~ir~~~~  379 (435)
T PRK10435        351 FGELTGIA--VLLTMLPYFYSCVDLIRFEGV  379 (435)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence            44555552  344566778888888876543

>TIGR00814 stp serine transporter

Probab=95.54  E-value=0.061  Score=48.94  Aligned_cols=119  Identities=14%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHh
Q psy9719          93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLF  172 (248)
Q Consensus        93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sli  172 (248)
                      +.+...+..+.-.+++..|+-=.....+|.+.....+.+..+..+..++........++.+.++.+|..-|++=++++-+
T Consensus       277 ~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~  356 (397)
T TIGR00814       277 AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEAL  356 (397)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence            35666667777777777777666667788887762121111111122334455667778889999999999999999966


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccccCCCcchHH-HHHhHHHHHHHH
Q psy9719         173 GAFCLASLGIIFPATIHILVLRHERIGFGFLNWV-LFKDIFLIAFGL  218 (248)
Q Consensus       173 Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~Gi  218 (248)
                      |+-..+.+.|++|...-.|.-.-+       +++ +..++++++.|+
T Consensus       357 ~gp~~a~i~~~~p~~~~~~v~~l~-------~~~~~~~~~fv~~~g~  396 (397)
T TIGR00814       357 GGPIIAMILFLMPMYAIYKVPALK-------KYRGRISNVFVTVIGL  396 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHccHHHH-------HhCCCcchheeEeeec
Confidence            777777888899987555543221       222 234666666554

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=95.50  E-value=0.42  Score=44.35  Aligned_cols=40  Identities=10%  Similarity=-0.008  Sum_probs=23.6

Q ss_pred             HHHHhccchhHHHhHhhh--hHHHHHHHHHHHHHHHHHhccc
Q psy9719         157 AFAMVIPHLDLLISLFGA--FCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       157 ~lA~~iP~~~~v~sliGa--~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      .+....|+.....+.+-+  ..+..+.+.++.+-++++++++
T Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~  400 (469)
T PRK11049        359 VLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQR  400 (469)
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344456665444443333  2334577788888888877654

>KOG1287|consensus

Probab=95.27  E-value=0.22  Score=46.11  Aligned_cols=48  Identities=10%  Similarity=-0.009  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccccc
Q psy9719         151 IVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERI  198 (248)
Q Consensus       151 i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~  198 (248)
                      ......++..++.|++.+++.++=.-.....+.+-+++|+|.++++..
T Consensus       342 f~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~  389 (479)
T KOG1287|consen  342 FSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLP  389 (479)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            334444555567799999999988888888888999999999887743

>PRK15049 L-asparagine permease; Provisional

Probab=95.17  E-value=0.6  Score=43.74  Aligned_cols=29  Identities=7%  Similarity=0.096  Sum_probs=20.8

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      ++.++++  +..+..+.++++.+.+++.+|+
T Consensus       378 f~~l~~~--~~~~~li~y~~~~~~~l~~R~~  406 (499)
T PRK15049        378 FEIVLNF--ASLGIIASWAFIIVCQMRLRKA  406 (499)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555  3456688999999999988654

>PRK10238 aromatic amino acid transporter; Provisional

Probab=95.17  E-value=0.74  Score=42.54  Aligned_cols=30  Identities=17%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      ++.+.++  +..+..+.+.+|.+.+++.+|++
T Consensus       358 f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~~  387 (456)
T PRK10238        358 FGLLMAL--VVSALVINWAMISLAHMKFRRAK  387 (456)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555  33456789999999999987753

>PRK10746 putative transport protein YifK; Provisional

Probab=95.08  E-value=0.72  Score=42.72  Aligned_cols=43  Identities=7%  Similarity=0.029  Sum_probs=27.5

Q ss_pred             HHHHHHhccchhHHHhHhhhhH--HHHHHHHHHHHHHHHHhcccc
Q psy9719         155 TWAFAMVIPHLDLLISLFGAFC--LASLGIIFPATIHILVLRHER  197 (248)
Q Consensus       155 ~~~lA~~iP~~~~v~sliGa~~--~~~l~fi~P~~~yl~~~~~~~  197 (248)
                      ...+....|+-+.+++.+-+++  +..+.++++++.+++.+|+++
T Consensus       346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~  390 (461)
T PRK10746        346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHK  390 (461)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344445666566655554433  347888899999999877543

>PLN03074 auxin influx permease; Provisional

Probab=95.01  E-value=0.26  Score=45.94  Aligned_cols=152  Identities=13%  Similarity=-0.016  Sum_probs=83.8

Q ss_pred             HHHHHhhhhhhhccccccchhhccccccccccccccch--hhhhhhhhhhhccccccCcccchhhhccCCCc-h-HHHHH
Q psy9719          25 FAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPT--FVHFEYSTGLCGYMKYGNDAQSSITLNIASDQ-K-LAQVV  100 (248)
Q Consensus        25 y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~-~-~~~~~  100 (248)
                      +..++...|.+.|+.+..|+|++|++|++.+....+..  +.+.|+.+|+.||+.||    +++..+-+.-+ . -....
T Consensus       236 f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG----~~~~~~s~~l~~lp~~~~~  311 (473)
T PLN03074        236 FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFG----DELLTHSNAFSLLPRSGWR  311 (473)
T ss_pred             HHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeec----hhhhhchhHHhcCCCchHH
Confidence            33455578889999999999999999999886644433  33467889999999997    44432222101 1 11122


Q ss_pred             HHHHHHHHHHHhccccchHHH-HHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHH
Q psy9719         101 KLLYALVVFFTYPLQNFVPLE-LLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLAS  179 (248)
Q Consensus       101 ~i~~~l~~~~s~pL~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~  179 (248)
                      +....+.+  --.+..++..- -+... +++ .   . ..+..+....|..+-....+++.++--.=-.++.+=|+.|+.
T Consensus       312 ~~~~~~~~--i~~~~sy~l~~~p~~~~-~e~-~---~-~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~  383 (473)
T PLN03074        312 DAAVILML--IHQFITFGFACTPLYFV-WEK-A---I-GVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGAL  383 (473)
T ss_pred             HHHHHHHH--HHHHHHHHHHHhhHHHH-HHH-H---h-cccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            22222211  11222222211 01111 111 1   1 222344556787777777777777666656666666677776


Q ss_pred             HHHHHHHHH
Q psy9719         180 LGIIFPATI  188 (248)
Q Consensus       180 l~fi~P~~~  188 (248)
                      .+-.+--++
T Consensus       384 ~~s~l~~i~  392 (473)
T PLN03074        384 LVSFTVYII  392 (473)
T ss_pred             HHHHHHHHH
Confidence            665543333

>TIGR00908 2A0305 ethanolamine permease

Probab=94.97  E-value=0.92  Score=41.60  Aligned_cols=32  Identities=13%  Similarity=0.129  Sum_probs=19.8

Q ss_pred             cchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      .+.+.+.++.  ..+..+.++++.+.+++.++++
T Consensus       343 ~~~~~l~~~~--~~~~~~~y~~~~~a~i~lr~~~  374 (442)
T TIGR00908       343 GQTALIILVS--VFGAIISYVLSMAAHFTLRIRR  374 (442)
T ss_pred             ccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence            3444444432  2446678888888888776654

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=94.69  E-value=0.62  Score=42.28  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             chHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhh-----ccccccchhhHHHHHHHHHHHHHHHHHH---hcc--
Q psy9719          94 QKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHM-----IQYSERKKLIVEYVFRELIVLITWAFAM---VIP--  163 (248)
Q Consensus        94 ~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~r~~i~~~~~~lA~---~iP--  163 (248)
                      ++...+..+...+..+.+..-.+....+.++.. -+++.     .+.+ +.+...+-..  ...+++.++..   ..|  
T Consensus       270 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~-a~d~~lP~~~~~~~-k~~~P~~a~~--~~~~i~~i~~~~~~~~~~~  345 (426)
T PF13520_consen  270 SWLAIIVSIAAILSLFGSINAFIFGASRLLYAM-ARDGVLPKWFAKVN-KFGTPYNAII--LVAVISSILLLLFLFIPQS  345 (426)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSGGGGTTS-SSSSCHHHHH--HHHHHHHHHHHHTTTSSSS
T ss_pred             cccccccccccccccccccchhhcchhhccccc-ccccchhhhhhhcc-ccCCceeeeh--hhhHHHHHHHHHHHhhhHH
Confidence            355566666666666665555555555555554 22211     1111 1111122111  12222222221   234  


Q ss_pred             chhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccc
Q psy9719         164 HLDLLISLFGAFCLASLGIIFPATIHILVLRHER  197 (248)
Q Consensus       164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~  197 (248)
                      +++.+.++  +.....+.++++.+..++.+++++
T Consensus       346 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~  377 (426)
T PF13520_consen  346 SFDILVSL--SSVGYLISYILVILAVLFLRRKRP  377 (426)
T ss_dssp             HHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcC
Confidence            45555553  344556777787777777766653

...

>PRK11387 S-methylmethionine transporter; Provisional

Probab=94.64  E-value=1.2  Score=41.21  Aligned_cols=20  Identities=10%  Similarity=0.031  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHhccc
Q psy9719         177 LASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       177 ~~~l~fi~P~~~yl~~~~~~  196 (248)
                      ...+.++++++.++++++++
T Consensus       374 ~~li~y~~~~~~~i~lr~~~  393 (471)
T PRK11387        374 AVVAVWLSICASHFMFRRRH  393 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34567888888888776653

>PRK11021 putative transporter; Provisional

Probab=94.61  E-value=3.4  Score=37.46  Aligned_cols=33  Identities=15%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             ccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         162 IPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       162 iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      -.+++.+.++..  ....+.|.++.+-.+++.+++
T Consensus       331 ~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~  363 (410)
T PRK11021        331 GLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR  363 (410)
T ss_pred             hcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence            457777777633  456788888888888776643

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=94.60  E-value=2.8  Score=38.89  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=20.2

Q ss_pred             chhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         164 HLDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      +++.+.++  +..+..+.|.++.+-.+++++++
T Consensus       355 ~~~~l~~~--~~~~~~i~y~~~~~a~~~lr~~~  385 (473)
T TIGR00905       355 AYNVLVSL--AVVMILVPYLLSAAYLLKLAKVG  385 (473)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555554  34456788888888888876654

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=94.58  E-value=0.71  Score=42.41  Aligned_cols=31  Identities=16%  Similarity=0.187  Sum_probs=16.3

Q ss_pred             hccchhHHHhHhhhhHHHHHHHHHHHHHHHH
Q psy9719         161 VIPHLDLLISLFGAFCLASLGIIFPATIHIL  191 (248)
Q Consensus       161 ~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~  191 (248)
                      ..++++.+.++..............+.+.+|
T Consensus       346 ~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr  376 (445)
T PRK11357        346 FVSDLTSLLGYFTLVMCFKNTLTFGSIIWCR  376 (445)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence            3577777777655544333333344444433

>PRK10483 tryptophan permease; Provisional

Probab=94.37  E-value=0.71  Score=42.25  Aligned_cols=94  Identities=12%  Similarity=0.058  Sum_probs=63.2

Q ss_pred             CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-hhHHHhH
Q psy9719          93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-LDLLISL  171 (248)
Q Consensus        93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~~~v~sl  171 (248)
                      +.+....+.++..+++..||-=.....+|.+... ++.+.    +   ...|........+-..++|.+-|+ |-.-++.
T Consensus       279 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~-~k~~~----~---~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~y  350 (414)
T PRK10483        279 SRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL-FGFDD----S---AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGY  350 (414)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC----c---cccceeeehhhHhhHHHHHHHhHHHHHHHHHH
Confidence            3466677777777788777655444556665554 43211    1   112333344556667788999888 7788999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         172 FGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       172 iGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      .|.. .+.+.-++|+++-++.+++
T Consensus       351 AG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        351 AGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHhc
Confidence            8966 6777789999999999875

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=94.37  E-value=1.3  Score=40.72  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      ++.++++.+...  .+.+.++++.+++.+|+
T Consensus       340 ~~~l~~~~~~~~--li~y~~~~~a~i~lr~~  368 (446)
T PRK10197        340 FKFLIDSSGAIA--LLVYLVIAVSQLRMRKI  368 (446)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            566666655444  48888888888887663

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=94.28  E-value=1.1  Score=42.17  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=14.4

Q ss_pred             CCCCC-CCCCCccchhhhHHHHHHHHHH
Q psy9719           1 MKEPK-KFRQPFGVFNIGIFLTAMLFAI   27 (248)
Q Consensus         1 m~~P~-~f~~~~~~l~~~~~~~~~~y~~   27 (248)
                      ||||+ ++||   ++..+..++..+|..
T Consensus       220 ~knP~r~~Pr---Ai~~~~i~~~~l~~l  244 (507)
T TIGR00910       220 LENPGRDYPL---AMILLMIAAICLDAI  244 (507)
T ss_pred             ccCCcccccH---HHHHHHHHHHHHHHH
Confidence            46665 4666   666666666665553

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=93.68  E-value=2.6  Score=38.47  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=26.1

Q ss_pred             CCCCC-CCCCCccchhhhHHHHHHHHHHHHhhhhhhhc
Q psy9719           1 MKEPK-KFRQPFGVFNIGIFLTAMLFAITGLCGYMKYG   37 (248)
Q Consensus         1 m~~P~-~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G   37 (248)
                      +|||+ +.|+   ++..++.++..+|.......-...+
T Consensus       227 ~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~  261 (466)
T COG0531         227 VKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLP  261 (466)
T ss_pred             hcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            68994 6799   9999999999999987665444433

>TIGR00911 2A0308 L-type amino acid transporter

Probab=93.39  E-value=0.95  Score=42.31  Aligned_cols=33  Identities=12%  Similarity=-0.038  Sum_probs=16.0

Q ss_pred             hccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         161 VIPHLDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       161 ~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      ..+++..++++.+  ....+.+++..+-.++++++
T Consensus       383 ~~~~~~~l~~~~~--~~~~i~y~l~~~a~i~lR~~  415 (501)
T TIGR00911       383 FSGDIYSLINLIS--FANWLFNALAVAGLLWLRYK  415 (501)
T ss_pred             ccCCHHHHHHHHH--HHHHHHHHHHHHHHHheecc
Confidence            3556665555322  23345556555444444443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=93.33  E-value=1.4  Score=40.32  Aligned_cols=120  Identities=14%  Similarity=0.089  Sum_probs=73.9

Q ss_pred             CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-hhHHHhH
Q psy9719          93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-LDLLISL  171 (248)
Q Consensus        93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~~~v~sl  171 (248)
                      +.+...++.+...+++..||-=.....+|.+... ++.+    +++   ..|........+-..++|.+-|+ |=.-++.
T Consensus       280 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~-~~~~----~~~---~~r~~~~~ltflPPl~~al~~P~gFl~AL~y  351 (415)
T PRK09664        280 HGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL-FKID----NSH---GGRFKTVLLTFLPPALLYLIFPNGFIYGIGG  351 (415)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC----Ccc---ccceeeehhhHhhhHHHHHHhhHHHHHHHHH
Confidence            4567777777877788777654444555555554 3321    111   12333344556667788998888 7888999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccccCCCcch--HHHHHhHHHHHHHHHHHHH
Q psy9719         172 FGAFCLASLGIIFPATIHILVLRHERIGFGFLN--WVLFKDIFLIAFGLFVMVS  223 (248)
Q Consensus       172 iGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~Gi~~~v~  223 (248)
                      .|.. .+.+.-++|+++-++.+++...  ..++  --+..-.+.+.+|++..+.
T Consensus       352 AG~~-~~il~~ilP~lM~~~~Rk~~~~--~~y~v~GG~~~l~~~~~~g~~ii~~  402 (415)
T PRK09664        352 AGLC-ATIWAVIIPAVLAIKARKKFPN--QMFTVWGGNLIPAIVILFGITVILC  402 (415)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHhcccCC--CCceeeCCHHHHHHHHHHHHHHHHH
Confidence            8885 6688889999999999875221  1111  0133444555666555443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=93.02  E-value=6.3  Score=36.55  Aligned_cols=30  Identities=10%  Similarity=0.200  Sum_probs=20.6

Q ss_pred             chhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         164 HLDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      .++.++++  +.....+.+.+|...+++.+|+
T Consensus       380 ~f~~l~~~--~~~~~~i~y~~~~~~~l~~~~~  409 (482)
T TIGR00907       380 AFQAIFSV--CTVALDVSYVIPIICKLAKGRN  409 (482)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC
Confidence            45555655  3445678899999998876554

>PRK10580 proY putative proline-specific permease; Provisional

Probab=92.79  E-value=4.2  Score=37.50  Aligned_cols=18  Identities=17%  Similarity=-0.003  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHhcc
Q psy9719         178 ASLGIIFPATIHILVLRH  195 (248)
Q Consensus       178 ~~l~fi~P~~~yl~~~~~  195 (248)
                      ..+.++++++.+++.+++
T Consensus       368 ~~~~y~~~~~~~~~lr~~  385 (457)
T PRK10580        368 TVWVWIMILLSQIAFRRR  385 (457)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            567889999888888765

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=92.55  E-value=2.5  Score=40.26  Aligned_cols=29  Identities=17%  Similarity=0.151  Sum_probs=19.6

Q ss_pred             chhHHHhHhhhhHHHHHHHHHHHHHHHHHhc
Q psy9719         164 HLDLLISLFGAFCLASLGIIFPATIHILVLR  194 (248)
Q Consensus       164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~  194 (248)
                      +++.+.++.  ..+..+.|.++++..+.+++
T Consensus       382 ~~~~l~~l~--sig~ll~y~lv~~~~l~lR~  410 (557)
T TIGR00906       382 DLKALVDLL--SIGTLLAYSLVAACVLILRY  410 (557)
T ss_pred             CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            566666653  34567889988777777664

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=91.32  E-value=5.2  Score=36.78  Aligned_cols=18  Identities=17%  Similarity=0.108  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHhcc
Q psy9719         178 ASLGIIFPATIHILVLRH  195 (248)
Q Consensus       178 ~~l~fi~P~~~yl~~~~~  195 (248)
                      ..+.+++..+.+++.+++
T Consensus       371 ~~~~y~~~~~~~i~~r~~  388 (452)
T TIGR01773       371 ALLVYLVIAVSQLRMRKK  388 (452)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            468888888777777654

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=90.56  E-value=12  Score=34.65  Aligned_cols=29  Identities=10%  Similarity=0.015  Sum_probs=19.1

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      ++.+.++.  ..+..+.++++++.+++.+++
T Consensus       364 ~~~l~~~~--~~~~~i~y~~~~~~~i~~r~~  392 (478)
T TIGR00913       364 FTWLLNIS--GLSGFFTWMCICLSHIRFRKA  392 (478)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            34444442  345668889999888888653

>PRK10836 lysine transporter; Provisional

Probab=89.83  E-value=12  Score=34.80  Aligned_cols=20  Identities=15%  Similarity=-0.059  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q psy9719         176 CLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       176 ~~~~l~fi~P~~~yl~~~~~  195 (248)
                      .+..+.+++.++.+++.+|+
T Consensus       380 ~~~~~~y~~~~~a~l~~R~~  399 (489)
T PRK10836        380 MTGFIAWLGIAISHYRFRRG  399 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            35567778888888887663

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=88.77  E-value=19  Score=33.63  Aligned_cols=29  Identities=14%  Similarity=0.171  Sum_probs=18.8

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRH  195 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~  195 (248)
                      ++.+.++.  .....+.+++++..+++.+|+
T Consensus       394 f~~l~~l~--~~~~li~y~~~~~a~i~~r~~  422 (496)
T PRK15238        394 FNILTLMA--NVSMTLPYLFLAGAFPFFKKK  422 (496)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            34445542  345678888888888887553

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=84.64  E-value=4.3  Score=36.01  Aligned_cols=37  Identities=16%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhcccc
Q psy9719           1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDA   40 (248)
Q Consensus         1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~   40 (248)
                      +|||++.+|   +...+..+...+|...-...-..+|.+.
T Consensus       205 ~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       205 LSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             hCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            588999998   9999999999999987776666666654

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00930 2a30 K-Cl cotransporter

Probab=84.25  E-value=37  Score=34.69  Aligned_cols=27  Identities=7%  Similarity=0.065  Sum_probs=13.9

Q ss_pred             cchhHHHhHhhhhHHHHHHHHHHHHHHHH
Q psy9719         163 PHLDLLISLFGAFCLASLGIIFPATIHIL  191 (248)
Q Consensus       163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~  191 (248)
                      .+++.+..++...  ..++|.+=.+-.++
T Consensus       456 ~~l~~ia~lis~~--fLl~Y~lvnla~~~  482 (953)
T TIGR00930       456 AELNTIAPIISNF--FLASYALINFSCFH  482 (953)
T ss_pred             HhHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            4677777765433  34445444444333

>KOG4303|consensus

Probab=83.66  E-value=0.58  Score=41.62  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccc
Q psy9719           1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIA   49 (248)
Q Consensus         1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~   49 (248)
                      |++|++|.-   .+.|+-....++=..+|..+|..||++.+..+.++..
T Consensus       328 M~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp  373 (524)
T KOG4303|consen  328 MKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP  373 (524)
T ss_pred             cCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC
Confidence            999999999   9999999999999999999999999998666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 52/210 (24%)

Query: 46  LNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYA 105
           L+I ++  R    TW      +       +     D  ++I  +  +  + A+  K+   
Sbjct: 330 LSIIAESIRDGLATW------DN------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 106 LVVFFTYPLQNFVP---LELLWVNYIK---QHMIQYSERKKLIVEYVFRELIVLITWAFA 159
           L VF   P    +P   L L+W + IK     ++    +  L+ +      I        
Sbjct: 378 LSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-------- 426

Query: 160 MVIP--HLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKD-----IF 212
             IP  +L+L + L                +H  ++ H  I   F +  L         +
Sbjct: 427 -SIPSIYLELKVKLENE-----------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 213 L-IAFGLFVMVSGTVISLMDIFTAIQEDFH 241
             I   L  +        M +F  +  DF 
Sbjct: 475 SHIGHHLKNIEHP---ERMTLFRMVFLDFR 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	96.59
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	95.81
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	94.95

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=96.59  E-value=0.042  Score=49.69  Aligned_cols=30  Identities=7%  Similarity=-0.023  Sum_probs=17.7

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      ++.+.++.+  .+..+++.++.+.+++..+++
T Consensus       367 f~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~  396 (511)
T 4djk_A          367 FLIALALTV--VIYLCAYFMLFIGYIVLVLKH  396 (511)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence            344444432  345677888887776665543

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=95.81  E-value=0.051  Score=48.11  Aligned_cols=30  Identities=10%  Similarity=0.147  Sum_probs=21.7

Q ss_pred             hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719         165 LDLLISLFGAFCLASLGIIFPATIHILVLRHE  196 (248)
Q Consensus       165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~  196 (248)
                      ++.+.++.+  .+..+++.++++.+++.++++
T Consensus       350 ~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          350 FGLVSSVSV--IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             CHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            556666543  456788999999999887765

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=94.95  E-value=0.17  Score=44.78  Aligned_cols=33  Identities=9%  Similarity=0.090  Sum_probs=23.9

Q ss_pred             cchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccc
Q psy9719         163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHER  197 (248)
Q Consensus       163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~  197 (248)
                      .+++.+.++.  ..+..++|.++.+.+++.+++++
T Consensus       338 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~r~~~~  370 (444)
T 3gia_A          338 FNMEGVASIT--SAVFMVIYLFVILSHYILIDEVG  370 (444)
T ss_dssp             SCHHHHHHHH--HHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             cCHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcCC
Confidence            4678777773  34567888898888888876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00