Psyllid ID: psy9783

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720------
Protein Sequence
MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEHGLIISHRVSARDGPEFEILDQKDLPQPPAPDAAASTTDAAEEKMETNGNGNGDVGTPDSKKRKVDSSDESLPAKKVRTDEKSTDKVPEVEEVYLD
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccHHHHHHHcccccccccccccHHHHccccccHHcEEEccHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHccccEEEEccccHHHHHHHHHHHHcccccEEEccccccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHcccccccccHHHHHHHHHccccccHHHcccHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHcccccccccEEEEEcccEEEEEcccccccccccccccccccccEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccEHHcccccEEEcccccccccHHHHHHHHHHHccccEEEEEcccccccHccEEEEcccHHHHHHHHHHHHccccccEEEEEccccEEEEcccccEEccHHHccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHccEEEEccccHHHHHHHHHHHHHccccEEEEccccccccEEEEEcccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHccccccHHccccccccHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccEEccccEEEEEEccccccHHHHHHHHHHHcccccccccEEEcccEEEEEEccccccHcccccccEccEEcccEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccc
Coil and Loop (DISEMBL)
matkipgvFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVlsgfsnieivdldtidvsnLNRQFLFHKQHVGKSKAQVARNSalnfnpdaniyyqvdfhlnrqflfhkqhvgksKAQVARNSalnfnpdanivAHHTSIIRFLHLNRQFLfhkqhvgksKAQVARNSalnfnpdanivaHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMclasevpliesgtagyEGQVELIKKGetkcyecdpkpaaktypgctirntpsepihCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGilrlnpftvlsglnicssdAGAKAAASeatangdvVRTSTRAwasacgydprklFAKFFDADIRYLISMSDlwktrkapqplvwdtlsdavagssketdggglkdqrVWSVAECARVFERSVRELKTKFDAavekdehlvwdkddkpaMDFVAACANIRAHVfsipeksrfDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSScqtvylrkkpnhrdqmivpekyltapnptcpvcspkpqrtigldvtKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSviisseegeteanndkplehgliishrvsardgpefeildqkdlpqppapdaaastTDAAEEKmetngngngdvgtpdskkrkvdssdeslpakkvrtdekstdkvpeveevyld
Flexible Loop (DISEMBL)
matkipgvfekDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASevpliesgtaGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAAseatangdvvrtSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAvagssketdggglkdqrvwSVAECARVFERSvrelktkfdaavekdehlvwdkddkPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIIsseegeteanndkpleHGLIISHRVSARDGPEFEILDQKDLPQPPAPDAAASTTDAAEEKmetngngngdvgtpdskkrkvdssdeslpakkvrtdekstdkvpeveevyld
Low Complexity Region (SEG)
MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICssdagakaaaseataNGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMveasgsviisseegeTEANNDKPLEHGLIISHRVSARDGPEFEIldqkdlpqppapdaaasttdaaeekMETNGNGNGDVGTPDSKKRKVDSSDESLPAKKVRTDEKSTDKVPEVEEVYLD
Disordered region (IsUnstruct)
*******VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAG*********ANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV***********LKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVI*****************************************************************************************************************
Disordered Region (DISOPRED)
**TKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLS******SQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVA**********LKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEHGLIISHRVSARDGPEFEIL********************************************************************EVEEVYLD
Disordered Region (DISEMBL)
MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ********VARNSALNFNPDANIYYQVDFHLNRQFLFHKQ********VARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQ********VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSS*****************VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAG***********DQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISS*********DKPLEHGLIISHRVSARDGPEFEILDQKDLPQ******************ETNGNGNGDV*******************************VPEVEEVYLD
Disordered Region (DISPRO)
MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEHGLIISHRVSARDGPEFEILDQKD***********************************************************TDKVPEVEEV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEHGLIISHRVSARDGPEFEILDQKDLPQPPAPDAAASTTDAAEEKMETNGNGNGDVGTPDSKKRKVDSSDESLPAKKVRTDEKSTDKVPEVEEVYLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	726	2.2.26 [Sep-21-2011]
Q9UBT2	640	SUMO-activating enzyme su	yes	N/A	0.783	0.889	0.418	1e-146
Q9Z1F9	638	SUMO-activating enzyme su	yes	N/A	0.698	0.794	0.450	1e-142
O42939	628	Ubiquitin-activating enzy	yes	N/A	0.614	0.710	0.362	4e-89
Q9SJT1	700	SUMO-activating enzyme su	no	N/A	0.606	0.628	0.343	1e-82
Q7SXG4	650	SUMO-activating enzyme su	yes	N/A	0.264	0.295	0.523	4e-73
Q28GH3	641	SUMO-activating enzyme su	yes	N/A	0.404	0.458	0.465	4e-72
Q642Q1	641	SUMO-activating enzyme su	N/A	N/A	0.264	0.299	0.509	5e-72
Q7ZY60	641	SUMO-activating enzyme su	N/A	N/A	0.264	0.299	0.505	2e-71
Q54L40	661	SUMO-activating enzyme su	yes	N/A	0.253	0.278	0.442	3e-51
Q9NAN1	582	SUMO-activating enzyme su	yes	N/A	0.250	0.312	0.410	2e-50

>sp|Q9UBT2|SAE2_HUMAN SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 316/755 (41%), Positives = 410/755 (54%), Gaps = 186/755 (24%)

Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN          
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 58

Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 59  ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 88

Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           IVA+H SI+                               NPD N              V
Sbjct: 89  IVAYHDSIM-------------------------------NPDYN--------------V 103

Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
            +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+CYEC P
Sbjct: 104 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 163

Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNV 310
           KP  +T+PGCTIRNTPSEPIHCIVWAK+LFN L                         + 
Sbjct: 164 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL---------------------FGEEDA 202

Query: 311 IRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWAS 370
            +   P           R +P           ++A A+A AS    +GD+ R ST+ WA 
Sbjct: 203 DQEVSPD----------RADPEAAWE-----PTEAEARARAS--NEDGDIKRISTKEWAK 245

Query: 371 ACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGG---- 426
           + GYDP KLF K F  DIRYL++M  LW+ RK P PL W      V    +ET+      
Sbjct: 246 STGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----VQSQGEETNASDQQN 301

Query: 427 ----GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACAN 482
               GLKDQ+V  V   AR+F +S+  L+    A       L+WDKDD  AMDFV + AN
Sbjct: 302 EPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDKDDPSAMDFVTSAAN 360

Query: 483 IRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRK 542
           +R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  +   C+T++L K
Sbjct: 361 LRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNK 420

Query: 543 KPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMV 602
           +PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   ++ ++K+   M A  
Sbjct: 421 QPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVA-P 478

Query: 603 DVMVE-ASGSVIISSEEGETEANNDKPL-EHGLIISHRVSARD----------------- 643
           DV +E   G+++ISSEEGETEANN K L E G+    R+ A D                 
Sbjct: 479 DVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDL 538

Query: 644 --GPEFEILDQKDLPQPPAP----DAAASTTDAAEEKM-------------------ETN 678
               EFE++   D P+   P    DAA S T+ +++                     E +
Sbjct: 539 GKDVEFEVV--GDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEED 596

Query: 679 GNGNGDVGTPD-SKKRKVDSSDESLPAKKVRTDEK 712
            + N DV   + S+KRK+D   E+L AK+ R ++K
Sbjct: 597 SSNNADVSEEERSRKRKLDEK-ENLSAKRSRIEQK 630

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9Z1F9|SAE2_MOUSE SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1

 Score =  507 bits (1306), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 287/637 (45%), Positives = 369/637 (57%), Gaps = 130/637 (20%)

Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN          
Sbjct: 9   RELAEAVSGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 58

Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF K+HVG+SKAQVA+ S L F+P AN
Sbjct: 59  ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFHPQAN 88

Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           I AHH SI+                               NPD N              V
Sbjct: 89  IEAHHDSIM-------------------------------NPDYN--------------V 103

Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
            +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+CYEC P
Sbjct: 104 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 163

Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNV 310
           KP  +T+PGCTIRNTPSEPIHCIVWAK+LFN L                         + 
Sbjct: 164 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL---------------------FGEEDA 202

Query: 311 IRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWAS 370
            +   P           R +P           ++A A+A AS    +GD+ R ST+ WA 
Sbjct: 203 DQEVSPD----------RADPEAAWE-----PTEAEARARAS--NEDGDIKRISTKEWAK 245

Query: 371 ACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVW-DTLSDAVAGSSKETDGG-GL 428
           + GYDP KLF K F  DIRYL++M  LW+ RK P PL W +  S   A + ++ +   GL
Sbjct: 246 STGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEANADQQNEPQLGL 305

Query: 429 KDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVF 488
           KDQ+V  V   A +F +S+  L+    A       L+WDKDD PAMDFV + AN+R H+F
Sbjct: 306 KDQQVLDVKSYASLFSKSIETLRVHL-AEKGDGAELIWDKDDPPAMDFVTSAANLRMHIF 364

Query: 489 SIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRD 548
           S+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  +   C+T++L K+PN R 
Sbjct: 365 SMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRK 424

Query: 549 QMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVE- 607
           +++VP   L  PN  C VC+ KP+ T+ L+V K+TV   ++ ++K+   M A  DV +E 
Sbjct: 425 KLLVP-CALDPPNTNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVA-PDVQIED 482

Query: 608 ASGSVIISSEEGETEANNDKPL-EHGLIISHRVSARD 643
             G+++ISSEEGETEANN K L + G+    R+ A D
Sbjct: 483 GKGTILISSEEGETEANNPKKLSDFGIRNGSRLQADD 519

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O42939|UBA2_SCHPO Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba2 PE=1 SV=1

 Score =  329 bits (844), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 214/591 (36%), Positives = 292/591 (49%), Gaps = 145/591 (24%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
            K +KVL+VGAGGIGCELLKNL++SG   + I+DLDTID+SNLN                
Sbjct: 23  FKSAKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLN---------------- 66

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                   RQFLF K+HV + KA VA  +A +FNP+  + A+H 
Sbjct: 67  ------------------------RQFLFRKKHVKQPKAIVAAKTASSFNPNVKLEAYH- 101

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
                                                ANI           F V +F+QF
Sbjct: 102 -------------------------------------ANIKEDR-------FNVAWFRQF 117

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKT 256
            LV NALDN  AR HVN+ CL + VPLIESGT G+ GQV++I  G+T+CY+C+PK   KT
Sbjct: 118 DLVFNALDNLDARRHVNKQCLLASVPLIESGTTGFLGQVQVIIHGKTECYDCNPKEPPKT 177

Query: 257 YPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLP 316
           YP CTIR+TPS+PIHC+VWAK  F                                   P
Sbjct: 178 YPVCTIRSTPSQPIHCVVWAKSYF----------------------------------FP 203

Query: 317 KLIQAVQL--GILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGY 374
           +L    Q   GI+           N+ +++   +  A  A    ++    +    S  G+
Sbjct: 204 QLFSNDQESDGIID----------NVSANEMERREIAELARETTELNELRSSIGQSDNGF 253

Query: 375 DPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVW 434
           +  K+F K F  DI  L  + D W  R  P+ L +   S+ +  + K T    L +Q VW
Sbjct: 254 E--KIFTKMFTKDIVRLREVPDAWTYRSPPKELSY---SELLENAEKAT-SPWLNEQNVW 307

Query: 435 SVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKS 494
           +VAE   V   S+R L  +  ++  KD+ L +DKDDK  +DFVAA AN+RAHVF I + S
Sbjct: 308 NVAESFAVLRDSIRRLALRSKSS--KDD-LSFDKDDKDTLDFVAAAANLRAHVFGIQQLS 364

Query: 495 RFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPE 554
            FDIK MAGNIIPAIAT+NA++AGL +  AI VLQ   +  + +YL K+P      ++  
Sbjct: 365 EFDIKQMAGNIIPAIATTNAVIAGLCITQAIKVLQGDLNDLKNIYLAKRPTR----VLHC 420

Query: 555 KYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVM 605
           +    PNP CP CS    + +G++   MT+    + +LK  L+ S  V V+
Sbjct: 421 EKTCKPNPYCPTCSFVLLQ-LGVNDKNMTLRVLVDDILKSRLHYSEEVSVL 470

The dimeric enzyme acts as a SUMO/pmt3 E1 ligase. It mediates ATP-dependent activation of pmt3 and formation of a thioester with a conserved cysteine residue on aos1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1

 Score =  308 bits (788), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 297/600 (49%), Gaps = 160/600 (26%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           IK +KVL+VGAGGIGCELLK L LSGF +I I+D+DTI+VSNLN                
Sbjct: 10  IKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLN---------------- 53

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                   RQFLF + HVG+SKA+VAR++ L F P+ NI ++H 
Sbjct: 54  ------------------------RQFLFRRSHVGQSKAKVARDAVLRFRPNINIRSYHA 89

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
           ++                                NP              +F V++FKQF
Sbjct: 90  NVK-------------------------------NP--------------EFDVDFFKQF 104

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKT 256
            +V+N LDN  AR HVNR+CLA++VPL+ESGT G+ GQV +  KG+T+CYEC  KPA KT
Sbjct: 105 DVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHIKGKTECYECQTKPAPKT 164

Query: 257 YPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLP 316
           YP CTI +TP++ +HCIVWAK L                    KL    +  N       
Sbjct: 165 YPVCTITSTPTKFVHCIVWAKDLL-----------------FAKLFGDKNQDN------- 200

Query: 317 KLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDP 376
                                LN+ S+++ + +  +E     DV   S        G   
Sbjct: 201 --------------------DLNVRSNNSASSSKETE-----DVFERSEDEDIEQYG--- 232

Query: 377 RKLFAKFFDADIRYLISMSDLWKTRKAPQPLVW-DTLSDAVA---GSSKE---TDGG--- 426
           RK++   F ++I   +S  + WK R+ P+P+   D L +++    GS++    TDG    
Sbjct: 233 RKIYDHVFGSNIEAALSNEETWKNRRRPRPIYSKDVLPESLTQQNGSTQNCSVTDGDLMV 292

Query: 427 ------GLKD-QRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAA 479
                 GLK+ Q +W + + + VF   +  LK  F    ++  HL +DKDD+ A++FV A
Sbjct: 293 SAMPSLGLKNPQELWGLTQNSLVF---IEALKLFFAKRKKEIGHLTFDKDDQLAVEFVTA 349

Query: 480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVY 539
            ANIRA  F IP  S F+ K +AGNI+ A+AT+NAI+AGL+V+ AI VL+      +  Y
Sbjct: 350 AANIRAESFGIPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLKKDVDKFRMTY 409

Query: 540 LRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMS 599
             + P+ +  ++  E Y   PNP C VCS  P   + ++  K  + +  + ++K  L M+
Sbjct: 410 CLEHPSKKLLLMPIEPY--EPNPACYVCSETP-LVLEINTRKSKLRDLVDKIVKTKLGMN 466

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7SXG4|SAE2_DANRE SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2

 Score =  276 bits (707), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 145/277 (52%), Positives = 164/277 (59%), Gaps = 85/277 (30%)

Query: 7   GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFH 66
           G   K L D +   +VLVVGAGGIGCELLKNLVL+GF NIE++DLDTIDVSNLN      
Sbjct: 6   GPLRKQLADSLSSCRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLN------ 59

Query: 67  KQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFN 126
                                             RQFLF K+HVGKSKAQVA+ S L F 
Sbjct: 60  ----------------------------------RQFLFQKKHVGKSKAQVAKESVLRFC 85

Query: 127 PDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISA 186
           P ANI A+H SI+                               NPD N           
Sbjct: 86  PSANITAYHDSIM-------------------------------NPDYN----------- 103

Query: 187 DFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCY 246
              V +F+ F LVMNALDNRAARNHVNRMCLA+++PLIESGTAGY GQV +IKKG+T+CY
Sbjct: 104 ---VEFFRNFQLVMNALDNRAARNHVNRMCLAADIPLIESGTAGYLGQVTVIKKGQTECY 160

Query: 247 ECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           EC PKP  KT+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 161 ECQPKPTQKTFPGCTIRNTPSEPIHCIVWAKYLFNQL 197

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28GH3|SAE2_XENTR SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1

 Score =  273 bits (698), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 140/301 (46%), Positives = 199/301 (66%), Gaps = 7/301 (2%)

Query: 347 AKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQP 406
           A   A+ +  +GD+ R ST+ WA + GYDP KLF K F  DI+YL++M  LW+ RK P P
Sbjct: 222 AAERANASNVDGDIKRVSTKQWAKSTGYDPIKLFNKLFRDDIKYLLTMDRLWRKRKPPVP 281

Query: 407 LVWDTL--SDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHL 464
           L W +L   +  + +  E+   GLKDQ+V  V  CA++F +SV  L+ +        E L
Sbjct: 282 LEWSSLHNKENCSETQNESSLQGLKDQKVLDVTSCAQLFSKSVETLREQLREKGNGAE-L 340

Query: 465 VWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHA 524
           VWDKDD PAMDFV A AN+R H+FS+  KSRFD+KSMAGNIIPAIAT+NA+++GL+VL  
Sbjct: 341 VWDKDDPPAMDFVTAAANLRMHIFSMNMKSRFDVKSMAGNIIPAIATTNAVISGLIVLEG 400

Query: 525 IHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTV 584
           + +L      C+TV+L K+PN R +++VP   L  PNP+C VC+ KP+ T+ L+V K+TV
Sbjct: 401 LKILSGNTEQCRTVFLNKQPNPRKKLLVP-CSLDPPNPSCYVCAIKPEVTVKLNVHKVTV 459

Query: 585 AEFEEAVLKKTLNMSAMVDVMVE-ASGSVIISSEEGETEANNDKPL-EHGLIISHRVSAR 642
              ++ +LK+   M A  DV +E   G+++ISSE GET+ANN++ + E G+  S ++ A 
Sbjct: 460 QMLQDKILKEKFAMVA-PDVQIEDGKGTILISSEAGETDANNNRKISEFGIRNSSQLQAD 518

Query: 643 D 643
           D
Sbjct: 519 D 519

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q642Q1|SAE2A_XENLA SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-a PE=2 SV=1

 Score =  273 bits (697), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/277 (50%), Positives = 166/277 (59%), Gaps = 85/277 (30%)

Query: 7   GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFH 66
           G   K++ + +  S++LVVGAGGIGCELLKNLVL+GF+N++++DLDTIDVSNLN      
Sbjct: 5   GALPKEVAEAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLN------ 58

Query: 67  KQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFN 126
                                             RQFLF K+HVG+SKAQVA+ S L F 
Sbjct: 59  ----------------------------------RQFLFQKKHVGRSKAQVAKESVLQFC 84

Query: 127 PDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISA 186
           PDANI A+H SI+                               NPD N           
Sbjct: 85  PDANITAYHDSIM-------------------------------NPDYN----------- 102

Query: 187 DFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCY 246
              V +FKQFT+ MNALDN AARNHVNRMCLA+ +PLIESGTAGY GQV +IKKG T+CY
Sbjct: 103 ---VEFFKQFTMAMNALDNNAARNHVNRMCLAAGIPLIESGTAGYLGQVSVIKKGVTECY 159

Query: 247 ECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           EC PKP  KT+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 160 ECQPKPTQKTFPGCTIRNTPSEPIHCIVWAKYLFNQL 196

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZY60|SAE2B_XENLA SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-b PE=2 SV=2

 Score =  271 bits (692), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/277 (50%), Positives = 166/277 (59%), Gaps = 85/277 (30%)

Query: 7   GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFH 66
           G   K++ + +  S++LVVGAGGIGCELLKNLVL+GF+N++++DLDTIDVSNLN      
Sbjct: 5   GALPKEVAEAVSASRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLN------ 58

Query: 67  KQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFN 126
                                             RQFLF K+HVG+SKAQVA+ S L F 
Sbjct: 59  ----------------------------------RQFLFQKKHVGRSKAQVAKESVLQFC 84

Query: 127 PDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISA 186
           PDA+I A+H SI+                               NPD N           
Sbjct: 85  PDASITAYHDSIM-------------------------------NPDYN----------- 102

Query: 187 DFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCY 246
              V +FKQFT+ MNALDN AARNHVNRMCLA+ +PLIESGTAGY GQV +IKKG T+CY
Sbjct: 103 ---VEFFKQFTMAMNALDNNAARNHVNRMCLAAGIPLIESGTAGYLGQVSVIKKGVTECY 159

Query: 247 ECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           EC PKP  KT+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 160 ECQPKPTQKTFPGCTIRNTPSEPIHCIVWAKYLFNQL 196

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54L40|SAE2_DICDI SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1

 Score =  203 bits (517), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/269 (44%), Positives = 146/269 (54%), Gaps = 85/269 (31%)

Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D I+  K+LVVGAGGIGCELLKNLVL+GF NI+I+DLDTID+SNLN              
Sbjct: 18  DKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLN-------------- 63

Query: 75  AQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAH 134
                                     RQFLF KQH+G SKA++A+ S + +N   NI AH
Sbjct: 64  --------------------------RQFLFRKQHIGMSKAKIAKESVMKYNEQVNITAH 97

Query: 135 HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFK 194
                                                        H  + S++FG  +FK
Sbjct: 98  ---------------------------------------------HGDVKSSEFGSEFFK 112

Query: 195 QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAA 254
           QF LVMNALDN +AR HVNR+CL+ +VP+IESGTAGY GQV +I+KG+T+C+EC P    
Sbjct: 113 QFDLVMNALDNISARRHVNRLCLSVDVPMIESGTAGYLGQVSVIRKGKTECFECQPIAVP 172

Query: 255 KTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           K +  CTIR  PS PIHCIVWAK LF  L
Sbjct: 173 KQFAVCTIRTNPSAPIHCIVWAKMLFGKL 201

The dimeric enzyme acts as a E1 ligase for sumo. It mediates ATP-dependent activation of sumo and formation of a thioester with a conserved cysteine residue on sae2.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NAN1|SAE2_CAEEL SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=3 SV=3

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/268 (41%), Positives = 139/268 (51%), Gaps = 86/268 (32%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           I +SK+LV+GAGGIGCELLKNL ++GF  + ++DLDTID+SNLN                
Sbjct: 11  IVQSKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLN---------------- 54

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                   RQFLF K+HV  SKA  A      F P   +   H 
Sbjct: 55  ------------------------RQFLFRKEHVSSSKAATATQVVKQFCPQIELTFDHD 90

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
           SI           F K+                                  + + +F+ +
Sbjct: 91  SI-----------FEKK----------------------------------YNMEFFQAY 105

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAK- 255
            +V+NALDNRAARN+VNRMC A+  PLI+SG+ GY GQV +I +G+T+CYEC  KP  + 
Sbjct: 106 DIVLNALDNRAARNYVNRMCHAANRPLIDSGSGGYFGQVSVIMRGKTECYECVDKPVQQT 165

Query: 256 TYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           TYPGCTIRNTPSE IHC VWAKH+FN L
Sbjct: 166 TYPGCTIRNTPSEHIHCTVWAKHVFNQL 193

The dimeric enzyme acts as a E1 ligase for smo-1. It mediates ATP-dependent activation of smo-1 and formation of a thioester with a conserved cysteine residue on uba-2.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	726
194750516	691	GF10481 [Drosophila ananassae] gi|190624	0.792	0.832	0.454	1e-162
195376273	697	GJ12222 [Drosophila virilis] gi|19415407	0.801	0.835	0.445	1e-161
170043874	644	ubiquitin-activating enzyme E1 [Culex qu	0.745	0.840	0.463	1e-160
383862623	672	PREDICTED: SUMO-activating enzyme subuni	0.812	0.877	0.451	1e-160
157126839	642	ubiquitin-activating enzyme E1 [Aedes ae	0.757	0.856	0.458	1e-159
125980480	697	GA20416 [Drosophila pseudoobscura pseudo	0.793	0.826	0.444	1e-157
195167753	687	GL22481 [Drosophila persimilis] gi|19410	0.750	0.793	0.455	1e-156
348503864	645	PREDICTED: SUMO-activating enzyme subuni	0.786	0.885	0.436	1e-145
213512398	644	SUMO-activating enzyme subunit 2 [Salmo	0.768	0.866	0.436	1e-145
4885649	640	SUMO-activating enzyme subunit 2 [Homo s	0.783	0.889	0.418	1e-144

>gi|194750516|ref|XP_001957576.1| GF10481 [Drosophila ananassae] gi|190624858|gb|EDV40382.1| GF10481 [Drosophila ananassae]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 327/720 (45%), Positives = 412/720 (57%), Gaps = 145/720 (20%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA  I GVF   L++L+KKSKVLVVGAGGIGCE+LKNLVLSGF++IEI+DLDTID+SNLN
Sbjct: 1   MAAAIDGVFPASLQELVKKSKVLVVGAGGIGCEVLKNLVLSGFTDIEIIDLDTIDLSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLFH++HVGKSKA+VAR 
Sbjct: 61  ----------------------------------------RQFLFHREHVGKSKARVARE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           SAL+FNPDA I A+H                                             
Sbjct: 81  SALSFNPDAKITAYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            S+ S D+GVN+FK+F +V++ALDNRAARNHVNRMCL ++VPL+ESGT+GY GQVELIK+
Sbjct: 96  DSVTSTDYGVNFFKKFDVVLSALDNRAARNHVNRMCLNADVPLVESGTSGYNGQVELIKR 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G T+CYEC PK A +++PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GLTQCYECMPKEAQRSFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDV 360
                       SQ  + I +           +   G +   S+   K A   A  N  V
Sbjct: 199 ---------FGESQEDEDI-SPDAADPDAKDASEKEGESTTVSNEKDKEAEDTANGN--V 246

Query: 361 VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDT-LSDAVAGS 419
           VR +TR WA  C YD  KLF KFF+ DI YL+ MS+LWKTRKAP P+ WDT L +  A  
Sbjct: 247 VRINTRQWAKDCNYDAGKLFNKFFNEDINYLLQMSNLWKTRKAPVPVQWDTLLPEGAADG 306

Query: 420 SKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAA 479
            KE      +  +VWSV ECA +F  +++EL   F   +E D+ LVWDKDD+PAMDFVAA
Sbjct: 307 EKEF---AKQHHKVWSVEECAHIFANALKELSASF-LKLEGDDTLVWDKDDRPAMDFVAA 362

Query: 480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVY 539
           CAN+R+H+F+I +KSRF+IKSMAGNIIPAIAT+NAI AG+ V+ A +VL++++  C+ VY
Sbjct: 363 CANVRSHIFNIEQKSRFEIKSMAGNIIPAIATTNAITAGISVMRAFNVLESKWEQCKAVY 422

Query: 540 LRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMS 599
            R + N R+Q++VPE +   PNP C VCS  P   + +D  K+ + +  + VL KTLNM 
Sbjct: 423 TRLRLNARNQILVPELFFPKPNPNCYVCSSDPAIGLKIDTKKVNIKQLRDDVLVKTLNM- 481

Query: 600 AMVDVMVEASGSVIISSEEGETEANNDKPL--------------------EHGLIISHRV 639
              DV VE++GS++ISSEEGETE N DK L                    E  +IISH  
Sbjct: 482 LNPDVTVESTGSILISSEEGETECNEDKLLADMNIVDGVILKCDDFFQNYELSIIISHFD 541

Query: 640 SARDGPEFEILDQKDLPQPPAPDAAASTTDAAEEKMETNGNGNG-----DVGTPDSKKRK 694
           S RD   FE++      QP   D   S     E K+    + NG     D G   SKK +
Sbjct: 542 SERDEAVFEVVADPKQLQPKEQDKEESVAAPEETKVAKKRSANGNEVAADEGPSTSKKSR 601

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376273|ref|XP_002046921.1| GJ12222 [Drosophila virilis] gi|194154079|gb|EDW69263.1| GJ12222 [Drosophila virilis]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 319/716 (44%), Positives = 414/716 (57%), Gaps = 134/716 (18%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA  I GV    L++L+KKSKVLVVGAGGIGCE+LKNLVLSGF+ IEI+DLDTID+SNLN
Sbjct: 1   MAAAIDGVLPATLQELVKKSKVLVVGAGGIGCEVLKNLVLSGFTEIEIIDLDTIDLSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLFH++HVGKSKA+VAR 
Sbjct: 61  ----------------------------------------RQFLFHREHVGKSKARVARE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           SAL+FNPDANI A+H                                             
Sbjct: 81  SALSFNPDANITAYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            S+ S D+GVN+FK+F +V++ALDNRAARNHVNRMCL ++VPLIESGT+GY GQVELIK+
Sbjct: 96  DSVTSTDYGVNFFKKFDVVLSALDNRAARNHVNRMCLNADVPLIESGTSGYNGQVELIKR 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G T+CYEC PK   +++PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GLTQCYECTPKEKQRSFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDV 360
             E +   ++         Q     +   +     + +N        K   S   ANG+V
Sbjct: 199 FGESVEDEDISPDAADPEAQEAAAEVKDADAAGDAADVN-----ENKKETDSPPNANGNV 253

Query: 361 VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDT-LSDAVAGS 419
           VR +TR WA  C YD  KLF KFF+ DI YL+ MS+LWK+RKAP P+ WDT L D V+  
Sbjct: 254 VRINTRQWAKDCNYDAAKLFNKFFNEDINYLLRMSNLWKSRKAPVPVQWDTLLPDGVSSD 313

Query: 420 SKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAA 479
           ++E      +  ++W+V ECA VF ++++EL   F   +E ++ LVWDKDD+PAMDFVAA
Sbjct: 314 AQEL---ARQHHKIWTVEECAHVFAKALKELSAAF-LKLEGNDTLVWDKDDQPAMDFVAA 369

Query: 480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVY 539
           CAN+R+H+F I  KSRF+IKSMAGNIIPAIAT+NAI AG+ VL A  VLQA++  C+ VY
Sbjct: 370 CANVRSHIFEIERKSRFEIKSMAGNIIPAIATTNAITAGISVLRAFSVLQAKWEQCKAVY 429

Query: 540 LRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMS 599
            R + N R+Q +VP+ +   PNP C VC+  P  T+ +D  ++ +  F + VL KTLNM 
Sbjct: 430 ARLRLNGRNQFLVPDAFFPEPNPNCYVCASDPAITLRIDTKRVQIKAFRDEVLIKTLNM- 488

Query: 600 AMVDVMVEASGSVIISSEEGETEANNDKPL--------------------EHGLIISHRV 639
              DV +E++GS++ISSEEGETE N  K L                    E  +II+H  
Sbjct: 489 VNPDVTLESTGSIVISSEEGETECNEQKLLSDMNIVDGVILKCDDFFQSYELSIIIAHFD 548

Query: 640 SARDGPEFEIL-DQKDLPQPPAPDAAASTTDAAEEKMETNGNGNGDVGTPDSKKRK 694
           + R+   FE++ D+  L     P  A + T+ +  K   NG+   D G   SK+ +
Sbjct: 549 ADREDVLFEVIADKNQLQPKEEPKEAEAETEPSSRKRAANGDDATDDGPSTSKRSR 604

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043874|ref|XP_001849594.1| ubiquitin-activating enzyme E1 [Culex quinquefasciatus] gi|167867157|gb|EDS30540.1| ubiquitin-activating enzyme E1 [Culex quinquefasciatus]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 321/693 (46%), Positives = 404/693 (58%), Gaps = 152/693 (21%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA +I GVFE  L++ I  SK+LVVGAGGIGCE+LKNLVLSGF +IEI+DLDTIDVSNLN
Sbjct: 1   MAAQIAGVFEPSLQEKISNSKILVVGAGGIGCEILKNLVLSGFQDIEIIDLDTIDVSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLFHK+HVGKSKA VAR 
Sbjct: 61  ----------------------------------------RQFLFHKEHVGKSKANVARE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           SAL+FNP+  I A+H                                             
Sbjct: 81  SALSFNPNVKIKAYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            SI + ++GV++F+QF LV+NALDNRAARNHVNR+CL ++VPLIESGTAGY GQVELIK+
Sbjct: 96  DSITTTNYGVSFFQQFQLVLNALDNRAARNHVNRLCLTADVPLIESGTAGYNGQVELIKR 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G+T+CYEC PK A K++PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GQTQCYECTPKAAQKSFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDV 360
                   N      P      + G          +G +  ++DA  K          +V
Sbjct: 199 ----FGESNEDEDVSPDTADP-EAG--------AEAGESALAADANEKG---------NV 236

Query: 361 VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTL-SDAVAGS 419
            R +TR WA+ CGYDP K+F K F  DI YL+SMS+LWK+R  P P  WD L  D  A +
Sbjct: 237 DRVNTRTWAAQCGYDPEKIFNKLFYDDINYLLSMSNLWKSRTPPNPAKWDALEEDGEAAA 296

Query: 420 SKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAA 479
             +T    L+DQ+V S+ E A+VF  ++  LK  F    + D HLVWDKDDK AMDFVAA
Sbjct: 297 PTDT---VLRDQKVLSLTESAKVFGDAIGALKDAFGKLPDGD-HLVWDKDDKYAMDFVAA 352

Query: 480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVY 539
           CANIRA +F+IP KSRF+IKSMAGNIIPAIAT+NAI AG+VV+HA  VL+  F  C++VY
Sbjct: 353 CANIRAQIFNIPRKSRFEIKSMAGNIIPAIATTNAITAGVVVMHAFRVLKGEFEKCKSVY 412

Query: 540 LRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMS 599
           +R +PN R+Q+ VP++ L  PNP C VC+ KP+ T+ +D   +TV E  + +L K LNM 
Sbjct: 413 MRLRPNARNQLFVPDRALNPPNPKCYVCAAKPEVTLKVDTKNVTVKELRDDILIKALNMI 472

Query: 600 AMVDVMVEASGSVIISSEEGETEANNDKPLEH-----GLI---------------ISHRV 639
              DV ++  G+++ISSEEGET+ NNDK LE      G I               I H+ 
Sbjct: 473 GP-DVTIDGKGTIVISSEEGETDCNNDKKLEELQIVDGCILKVDDFVQNYELTVTIVHKD 531

Query: 640 SARDGPEFEIL-DQKDL-PQPPAPDAAASTTDA 670
            ARD P F+I+ D + L P+   P+A  ST++ 
Sbjct: 532 PARDEPSFDIVADPESLKPKEDEPEAQPSTSNG 564

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862623|ref|XP_003706783.1| PREDICTED: SUMO-activating enzyme subunit 2 [Megachile rotundata]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 337/746 (45%), Positives = 429/746 (57%), Gaps = 156/746 (20%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA  I GVF ++L++ I +SKVL+VGAGGIGCE+LKNLV++GF +IEI+DLDTIDVSNLN
Sbjct: 1   MAANINGVFSENLQNAILRSKVLIVGAGGIGCEILKNLVMTGFVDIEIIDLDTIDVSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLF K+HVGKSKA+VA+ 
Sbjct: 61  ----------------------------------------RQFLFQKKHVGKSKAEVAKE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           +AL FNPDA I+ +H                                             
Sbjct: 81  TALTFNPDAKIIHYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            SI S D+GV++FK+FTLVMNALDNRAARNHVNRMCLA++VPLIESGTAGYEGQVELIKK
Sbjct: 96  DSITSVDYGVSFFKKFTLVMNALDNRAARNHVNRMCLAADVPLIESGTAGYEGQVELIKK 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G ++CYEC PK A KT+PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GLSQCYECTPKAAQKTFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVI-RSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGD 359
             E     +V   +  P+   A   G L+                     + S    N D
Sbjct: 199 FGEEDPDQDVSPDTADPEATDAAGEGALQ---------------------SESNEKGNID 237

Query: 360 VVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGS 419
            V T  R WA +C YD  KLF K F  DI+YL+SM +LWK R+ P PL W  L D V G 
Sbjct: 238 RVST--RIWAQSCNYDAEKLFTKLFHDDIKYLLSMDNLWKKRRPPTPLNWKELPDGVPGC 295

Query: 420 SKETDGGGLKDQRVWSVAECARVFERSVRELK--TKFDAAVEKDEHLVWDKDDKPAMDFV 477
           SKE +  GLKD + WS+++C  +F  S++ L    K  +      HL+WDKDD+ +MDFV
Sbjct: 296 SKEVNEPGLKDLQRWSISKCGTIFAESMKNLSKAVKVSSDKSSSNHLIWDKDDQHSMDFV 355

Query: 478 AACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQT 537
           AACANIRA++F IP+K+RFDIKSMAGNIIPAIAT+NAIVAGLVVLHA  +L+    +C++
Sbjct: 356 AACANIRAYIFGIPQKTRFDIKSMAGNIIPAIATTNAIVAGLVVLHAFRILENNLKACKS 415

Query: 538 VYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLN 597
           VYLR K NHR+Q++VPEK +  PNP C VC+P PQ  + +D  K T+ E EE VLK  LN
Sbjct: 416 VYLRSKMNHRNQLLVPEKNVNPPNPKCYVCAPMPQAVLAIDTFKATIKELEEVVLKNRLN 475

Query: 598 MSAMVDVMVEASGSVIISSEEGETEANNDKPLEH-----GLIIS---------------H 637
           M A  DV+++  G+V+ISSEEGETE NN+K LE      G I+                H
Sbjct: 476 MIAP-DVIIDGVGTVVISSEEGETEENNNKLLEQLGIKDGTILKVDDFQQNYSLTVTVVH 534

Query: 638 RVSAR---DGPEFEIL-DQKDL-PQPPAPDAAASTTDAAEEKMETNGNGNGDVGTPDS-- 690
           R       D P+F +L D+KDL P+         +T   +  +  +     +  TP    
Sbjct: 535 RERPNVKDDNPDFLVLADEKDLKPKEDNDSVVKPSTSNGQVDLSDDNVMIIETETPSDTI 594

Query: 691 KKRKVDSSDESLPAKKVRTDEKSTDK 716
           KKRK+++ +E++ +KK + +    +K
Sbjct: 595 KKRKMETPEETVSSKKQKVEVNDVEK 620

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126839|ref|XP_001660971.1| ubiquitin-activating enzyme E1 [Aedes aegypti] gi|108873125|gb|EAT37350.1| AAEL010641-PA [Aedes aegypti]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 321/700 (45%), Positives = 399/700 (57%), Gaps = 150/700 (21%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA +I GVFE +L++ I  SK+LVVGAGGIGCE+LKNLVLSGF +IEI+DLDTIDVSNLN
Sbjct: 1   MAAQIVGVFEPELQEKISNSKILVVGAGGIGCEILKNLVLSGFQDIEIIDLDTIDVSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLFHK+HVGKSKA VAR 
Sbjct: 61  ----------------------------------------RQFLFHKEHVGKSKANVARE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           SAL+FNP+  I A+H                                             
Sbjct: 81  SALSFNPNVKIKAYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            SI ++++GVN+F+QF LV+NALDNRAARNHVNR+CL ++VPLIESGTAGY GQVELIK+
Sbjct: 96  DSITTSNYGVNFFQQFNLVLNALDNRAARNHVNRLCLTADVPLIESGTAGYNGQVELIKR 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G T+CYEC PK A KT+PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GLTQCYECTPKAAQKTFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDV 360
             E     +V                   +P T        + ++   A A+E   N D 
Sbjct: 199 FGESNEDEDV-------------------SPDTADPEAGAEAGESALAAEANE-KGNVDR 238

Query: 361 VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSS 420
           V T  R WA  CGYDP K+F K F  DI YL+SMS+LWK+R  P P  WD L +   G +
Sbjct: 239 VNT--RTWAQQCGYDPEKIFNKLFYDDINYLLSMSNLWKSRTPPNPAKWDALEE--DGEA 294

Query: 421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAAC 480
             TD   L+DQ+V S+ E A+VF  S+  LK  F+   E D HLVWDKDDK AMDFVAAC
Sbjct: 295 APTD-TVLRDQKVLSLTESAKVFGESITALKKDFEKLAEGD-HLVWDKDDKHAMDFVAAC 352

Query: 481 ANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL 540
           ANIRA +F+IP KSRF++KSMAGNIIPAIAT+NAI AG+VV+HA  VL+     C++VY+
Sbjct: 353 ANIRAQIFNIPRKSRFEVKSMAGNIIPAIATTNAITAGVVVMHAFRVLKGELDKCKSVYM 412

Query: 541 RKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSA 600
           R +PN R+Q+ VP++ L  PNP C VC+ KP+ T+ +D   +TV E  + +L K LNM  
Sbjct: 413 RLRPNARNQLFVPDRTLNPPNPKCYVCAAKPEVTLKVDTKNVTVKELRDDILIKALNM-L 471

Query: 601 MVDVMVEASGSVIISSEEGETEANNDKPLEHGLIIS--------------------HRVS 640
             DV+++  G+++ISSEEGET+ NNDK LE   I+                     H+  
Sbjct: 472 NPDVILDGKGTIVISSEEGETDCNNDKKLEDLQIVDGCILKVDDFVQNYELTVTVIHKDP 531

Query: 641 ARDGPEFEILDQKDLPQPPAPDAAASTTDAAEEKMETNGN 680
            RD   F+I+   D  + P  D    T D        NGN
Sbjct: 532 GRDESSFDIVADPDSLK-PKEDEDQKTDDVQPSTSGQNGN 570

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125980480|ref|XP_001354264.1| GA20416 [Drosophila pseudoobscura pseudoobscura] gi|54642570|gb|EAL31317.1| GA20416 [Drosophila pseudoobscura pseudoobscura]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 316/711 (44%), Positives = 409/711 (57%), Gaps = 135/711 (18%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA  I GV    L++L+KKSKVLVVGAGGIGCE+LKNLVLSGF++I+I+DLDTID+SNLN
Sbjct: 1   MAAAIDGVLPGTLQELVKKSKVLVVGAGGIGCEVLKNLVLSGFNDIQIIDLDTIDLSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLFH++HVGKSKA+VAR 
Sbjct: 61  ----------------------------------------RQFLFHREHVGKSKARVARE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           +AL+FNPDA I A+H                                             
Sbjct: 81  TALSFNPDAKITAYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            S+ S+D+GV++F++F ++++ALDNRAARNHVNRMCL ++VPLIESGT+GY GQVELIK+
Sbjct: 96  DSVTSSDYGVSFFQKFDVILSALDNRAARNHVNRMCLNADVPLIESGTSGYNGQVELIKR 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G T+CYEC PK   +++PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GLTQCYECTPKEKQRSFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDV 360
             E L   ++         Q+V         F   +G +  +  +  K    E T NG+V
Sbjct: 199 FGESLDDEDISPDAADPDAQSVP------QEFDAGAGGDGEAKISKEKTPTEEVTNNGNV 252

Query: 361 VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSS 420
           VR +TR WA  C YD  KLF KFFD DI YL+ MS+LW +RKAP P+ WDTL     G++
Sbjct: 253 VRINTRQWAKDCDYDAAKLFNKFFDEDINYLLKMSNLWTSRKAPVPVSWDTL--VPEGTT 310

Query: 421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAAC 480
                   +  +VW+V ECA VF  +++EL   F   ++ DE LVWDKDD+PAMDFVAAC
Sbjct: 311 DIQPEFARQHHKVWTVEECAHVFANTLKELSASF-LKLKADETLVWDKDDQPAMDFVAAC 369

Query: 481 ANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL 540
           AN+R+++F I  KSRF+IKSMAGNIIPAIAT+NAI AG+ V+ A +VL+A++  C+ VY 
Sbjct: 370 ANVRSYIFDIERKSRFEIKSMAGNIIPAIATTNAITAGISVMRAFNVLEAKWEQCKAVYA 429

Query: 541 RKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSA 600
           R +PN R Q +VP+  L  PNP+C VCS  P  T+ +D  ++ + E  + VL KTLNM  
Sbjct: 430 RLRPNGRGQFLVPDASLAEPNPSCYVCSLDPAITLRIDTKRVHIKELRDDVLIKTLNM-L 488

Query: 601 MVDVMVEASGSVIISSEEGETEANNDKPLEH--------------------GLIISHRVS 640
             DV++  S S++ISSEEGET  N+DK L                       +IISH  +
Sbjct: 489 HPDVVLVGSNSILISSEEGETTDNDDKLLSEMNVVDGAILNCDDFHQNYSLSVIISHFDA 548

Query: 641 ARDGPEFEI-LDQKDL-PQPPAPDAAASTTDAAEEKMETNGNGNGDVGTPD 689
            RD   FE+  D K L P+          TD  +E  + + NG  DV   D
Sbjct: 549 ERDDSLFEVSADSKQLQPKEEEQKKPDDETDKGKEARKRSANG-ADVAADD 598

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167753|ref|XP_002024697.1| GL22481 [Drosophila persimilis] gi|194108102|gb|EDW30145.1| GL22481 [Drosophila persimilis]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 309/679 (45%), Positives = 399/679 (58%), Gaps = 134/679 (19%)

Query: 1   MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN 60
           MA  I GV    L++L+KKSKVLVVGAGGIGCE+LKNLVLSGF++I+I+DLDTID+SNLN
Sbjct: 1   MAAAIDGVLPGTLQELVKKSKVLVVGAGGIGCEVLKNLVLSGFNDIQIIDLDTIDLSNLN 60

Query: 61  RQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARN 120
                                                   RQFLFH++HVGKSKA+VAR 
Sbjct: 61  ----------------------------------------RQFLFHREHVGKSKARVARE 80

Query: 121 SALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 180
           +AL+FNPDA I A+H                                             
Sbjct: 81  TALSFNPDAKITAYH--------------------------------------------- 95

Query: 181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK 240
            S+ S+D+GV++F++F ++++ALDNRAARNHVNRMCL ++VPLIESGT+GY GQVELIK+
Sbjct: 96  DSVTSSDYGVSFFQKFDVILSALDNRAARNHVNRMCLNADVPLIESGTSGYNGQVELIKR 155

Query: 241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQK 300
           G T+CYEC PK   +++PGCTIRNTPSEPIHCIVWAKHLFN L                 
Sbjct: 156 GLTQCYECTPKEKQRSFPGCTIRNTPSEPIHCIVWAKHLFNQL----------------- 198

Query: 301 LLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDV 360
             E L   ++         Q+V         F   +G +  +  +  K    E T NG+V
Sbjct: 199 FGESLDDEDISPDAADPDAQSVP------QEFDAGAGGDGEAKISKEKTLTEEGTNNGNV 252

Query: 361 VRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSS 420
           VR +TR WA  C YD  KLF KFFD DI YL+ MS+LW +RKAP P+ WDTL     G++
Sbjct: 253 VRINTRQWAKDCDYDAAKLFNKFFDEDINYLLKMSNLWTSRKAPVPVSWDTL--VPEGTT 310

Query: 421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAAC 480
                   +  +VW+V ECA VF  +++EL   F   ++ DE LVWDKDD+PAM+FVAAC
Sbjct: 311 DIQPEFARQHHKVWTVEECAHVFANTLKELSASF-LKLKADETLVWDKDDQPAMNFVAAC 369

Query: 481 ANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL 540
           AN+R+++F I  KSRF+IKSMAGNIIPAIAT+NAI AG+ V+ A +VL+A++  C+ VY 
Sbjct: 370 ANVRSYIFDIERKSRFEIKSMAGNIIPAIATTNAITAGISVMRAFNVLEAKWEQCKAVYA 429

Query: 541 RKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSA 600
           R +PN R Q +VP+  L APNP+C VCS  P  T+ +D  ++ + E  + VL KTLNM  
Sbjct: 430 RLRPNGRGQFLVPDASLAAPNPSCYVCSLDPAITLRIDTKRVHIKELRDDVLIKTLNM-L 488

Query: 601 MVDVMVEASGSVIISSEEGETEANNDKPLEH--------------------GLIISHRVS 640
             DV++  S S++ISSEEGET  N+DK L                       +IISH  +
Sbjct: 489 HPDVVLVGSNSILISSEEGETTDNDDKLLSEMNVVDGAILNCDDFHQNYSLSVIISHFDA 548

Query: 641 ARDGPEFEI-LDQKDLPQP 658
            RD   FE+  D K L QP
Sbjct: 549 ERDDSLFEVSADSKQL-QP 566

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348503864|ref|XP_003439482.1| PREDICTED: SUMO-activating enzyme subunit 2-like [Oreochromis niloticus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 311/712 (43%), Positives = 397/712 (55%), Gaps = 141/712 (19%)

Query: 4   KIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
           ++ G   K+L D I   K+LVVGAGGIGCELLKNLVL+GF NIE++DLDTIDVSNLN   
Sbjct: 3   QLVGSLRKELADSISTCKILVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLN--- 59

Query: 64  LFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSAL 123
                                                RQFLF K+HVGKSKAQVA+ SAL
Sbjct: 60  -------------------------------------RQFLFQKKHVGKSKAQVAKESAL 82

Query: 124 NFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSI 183
            F P ANI A+H SI+                               NPD N        
Sbjct: 83  QFCPSANITAYHDSIM-------------------------------NPDYN-------- 103

Query: 184 ISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGET 243
                 V +F++F LVMNALDNRAARNHVNRMCLA+++PLIESGTAGY GQV +IKKG T
Sbjct: 104 ------VEFFRKFMLVMNALDNRAARNHVNRMCLAADIPLIESGTAGYLGQVTVIKKGMT 157

Query: 244 KCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLE 303
           +CYEC PKPA KT+PGCTIRNTPSEPIHCIVWAK+LFN                      
Sbjct: 158 ECYECQPKPAQKTFPGCTIRNTPSEPIHCIVWAKYLFN---------------------- 195

Query: 304 RLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRT 363
                     QL     A Q     ++P T          +  A+A AS+   +GD+ R 
Sbjct: 196 ----------QLFGEEDADQ----EVSPDTADPEAAWNPEETAARATASD--KDGDIKRV 239

Query: 364 STRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKET 423
           ST+ WA + GYDP KLF K F  DI YL++M  LWK RKAP PL W  L ++     + T
Sbjct: 240 STKEWARSTGYDPVKLFNKLFKDDIMYLLTMDKLWKKRKAPTPLDWHQLENSEC-PKEGT 298

Query: 424 DGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANI 483
              GLKDQ+V  V    ++F+ SV  L+++     E  E LVWDKDD PAMDFV A AN+
Sbjct: 299 PASGLKDQQVLDVWGYCQLFQHSVETLRSQLQEKGEGAE-LVWDKDDPPAMDFVTAAANL 357

Query: 484 RAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKK 543
           R H+FS+  KSRFD+KSMAGNIIPAIAT+NA++AGL+VL  + +L     SC+T++L K 
Sbjct: 358 RMHIFSMSMKSRFDVKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGELESCRTIFLNKC 417

Query: 544 PNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVD 603
           PN R +++VP   L  P+  C VC+ KP+ T+ L+V K  V   ++ ++K+   M A  D
Sbjct: 418 PNLRKKLLVP-CVLDPPSANCYVCASKPEVTVKLNVHKTMVLTLQDKIVKERFGMVA-PD 475

Query: 604 VMVE-ASGSVIISSEEGETEANNDKPL-EHGLIISHRVSARDGPE-----FEILDQKDLP 656
           V +E   G+++ISSEEGETEANN K L + G+    R+ A D  +       +L  +DL 
Sbjct: 476 VQIEDGKGTILISSEEGETEANNSKFLSDFGIRNGSRLQADDFLQDYTLLINVLHVEDLE 535

Query: 657 QPPAPDAAASTTDAA------EEKMETNGNGNGDVGTPDSKKRKVDSSDESL 702
           +    +      D A      +E++ +  NGN D   P S   K  S D+ +
Sbjct: 536 RDVEFEVVGEAPDKAPPPQTNQEEVNSITNGNKDSAQP-STSSKAPSEDDDI 586

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|213512398|ref|NP_001135121.1| SUMO-activating enzyme subunit 2 [Salmo salar] gi|209155064|gb|ACI33764.1| SUMO-activating enzyme subunit 2 [Salmo salar] gi|209155780|gb|ACI34122.1| SUMO-activating enzyme subunit 2 [Salmo salar]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 316/724 (43%), Positives = 396/724 (54%), Gaps = 166/724 (22%)

Query: 4   KIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF 63
           ++ G   K+L D +   +VLVVGAGGIGCELLKNLVL+GF NIE++DLDTIDVSNLN   
Sbjct: 3   QLVGSLRKELADSLSACRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLN--- 59

Query: 64  LFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSAL 123
                                                RQFLF K+HVGKSKAQVA+ S L
Sbjct: 60  -------------------------------------RQFLFQKKHVGKSKAQVAKESVL 82

Query: 124 NFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSI 183
            F P ANI A+H SI+                               NPD N        
Sbjct: 83  QFCPTANITAYHDSIM-------------------------------NPDYN-------- 103

Query: 184 ISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGET 243
                 V +F+ F LVMNALDNRAARNHVNRMCLA+++PLIESGTAGY GQV +IKKG T
Sbjct: 104 ------VEFFRNFMLVMNALDNRAARNHVNRMCLAADIPLIESGTAGYLGQVTVIKKGLT 157

Query: 244 KCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLE 303
           +CYEC PKP  KT+PGCTIRNTPSEPIHCIVWAK+LFN                      
Sbjct: 158 ECYECQPKPTQKTFPGCTIRNTPSEPIHCIVWAKYLFN---------------------- 195

Query: 304 RLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRT 363
                     QL     A Q     ++P T    L+   +D  A+A AS+   +GD+ R 
Sbjct: 196 ----------QLFGEEDADQ----EVSPDTADPELSWNPADTEARATASD--QDGDIKRV 239

Query: 364 STRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKET 423
           ST+ WA + GYD  KLF K F  DI+YL++M  LWK RKAP PL W  L        +E 
Sbjct: 240 STKDWARSTGYDAVKLFNKLFKDDIQYLLTMDKLWKKRKAPLPLDW--LEIQKLACPQEV 297

Query: 424 DGGGLKDQRVWSVAECARVFERSVRELKT----KFDAAVEKDEHLVWDKDDKPAMDFVAA 479
            G GLKDQ+V  VA  +++F RSV  L++    K D A      LVWDKDD PAMDFV A
Sbjct: 298 TGTGLKDQQVLGVAGYSQLFSRSVETLRSMLADKGDGA-----ELVWDKDDPPAMDFVTA 352

Query: 480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVY 539
            AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL A+ +L      C+T++
Sbjct: 353 AANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEALKILSGDVEQCRTIF 412

Query: 540 LRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMS 599
           L K+PN R +++VP   L  P+  C VC+ KP+ T+ L+V K  V   ++ +LK+   M 
Sbjct: 413 LNKQPNPRKKLLVP-CALDPPSANCYVCASKPEVTVKLNVHKTLVLALQDKILKEKFGMV 471

Query: 600 AMVDVMVE-ASGSVIISSEEGETEANNDKPL-EHGLIISHRVSARD-------------- 643
           A  DV +E   G+++ISSEEGETEANN K L + G+    R+   D              
Sbjct: 472 A-PDVQIEDGKGTILISSEEGETEANNSKFLSDFGIRHGSRLQVDDFLQDYTLLVNVMHC 530

Query: 644 -----GPEFEILDQKDLPQPPAPDAAASTTDAAEEKMETNGNGNGDVGTPDSKKRKVDSS 698
                  EFE++         APD A +   A E+K     NGN D   P +  +     
Sbjct: 531 EDLEKDVEFEVVGD-------APDKAPTPPSAQEDK--NVANGNKDSAEPSTSSKAPAEQ 581

Query: 699 DESL 702
           D+ L
Sbjct: 582 DDVL 585

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4885649|ref|NP_005490.1| SUMO-activating enzyme subunit 2 [Homo sapiens] gi|114676623|ref|XP_524210.2| PREDICTED: SUMO-activating enzyme subunit 2 isoform 7 [Pan troglodytes] gi|42559898|sp|Q9UBT2.2|SAE2_HUMAN RecName: Full=SUMO-activating enzyme subunit 2; AltName: Full=Anthracycline-associated resistance ARX; AltName: Full=Ubiquitin-like 1-activating enzyme E1B gi|4580600|gb|AAD24434.1|AF110957_1 SUMO-1 activating enzyme subunit 2 [Homo sapiens] gi|4096672|gb|AAC99992.1| anthracycline-associated resistance ARX [Homo sapiens] gi|13111961|gb|AAH03153.1| Ubiquitin-like modifier activating enzyme 2 [Homo sapiens] gi|32879905|gb|AAP88783.1| SUMO-1 activating enzyme subunit 2 [Homo sapiens] gi|48145629|emb|CAG33037.1| UBA2 [Homo sapiens] gi|60655679|gb|AAX32403.1| SUMO-1 activating enzyme subunit 2 [synthetic construct] gi|60655681|gb|AAX32404.1| SUMO-1 activating enzyme subunit 2 [synthetic construct] gi|123993495|gb|ABM84349.1| SUMO-1 activating enzyme subunit 2 [synthetic construct] gi|157928524|gb|ABW03558.1| SUMO1 activating enzyme subunit 2 [synthetic construct] gi|410214834|gb|JAA04636.1| ubiquitin-like modifier activating enzyme 2 [Pan troglodytes] gi|410250740|gb|JAA13337.1| ubiquitin-like modifier activating enzyme 2 [Pan troglodytes] gi|410293022|gb|JAA25111.1| ubiquitin-like modifier activating enzyme 2 [Pan troglodytes] gi|410354247|gb|JAA43727.1| ubiquitin-like modifier activating enzyme 2 [Pan troglodytes]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 316/755 (41%), Positives = 410/755 (54%), Gaps = 186/755 (24%)

Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN          
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 58

Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 59  ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 88

Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           IVA+H SI+                               NPD N              V
Sbjct: 89  IVAYHDSIM-------------------------------NPDYN--------------V 103

Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
            +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+CYEC P
Sbjct: 104 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 163

Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNV 310
           KP  +T+PGCTIRNTPSEPIHCIVWAK+LFN L                         + 
Sbjct: 164 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL---------------------FGEEDA 202

Query: 311 IRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWAS 370
            +   P           R +P           ++A A+A AS    +GD+ R ST+ WA 
Sbjct: 203 DQEVSPD----------RADPEAAWE-----PTEAEARARAS--NEDGDIKRISTKEWAK 245

Query: 371 ACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGG---- 426
           + GYDP KLF K F  DIRYL++M  LW+ RK P PL W      V    +ET+      
Sbjct: 246 STGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----VQSQGEETNASDQQN 301

Query: 427 ----GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACAN 482
               GLKDQ+V  V   AR+F +S+  L+    A       L+WDKDD  AMDFV + AN
Sbjct: 302 EPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDKDDPSAMDFVTSAAN 360

Query: 483 IRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRK 542
           +R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  +   C+T++L K
Sbjct: 361 LRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNK 420

Query: 543 KPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMV 602
           +PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   ++ ++K+   M A  
Sbjct: 421 QPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVA-P 478

Query: 603 DVMVE-ASGSVIISSEEGETEANNDKPL-EHGLIISHRVSARD----------------- 643
           DV +E   G+++ISSEEGETEANN K L E G+    R+ A D                 
Sbjct: 479 DVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDL 538

Query: 644 --GPEFEILDQKDLPQPPAP----DAAASTTDAAEEKM-------------------ETN 678
               EFE++   D P+   P    DAA S T+ +++                     E +
Sbjct: 539 GKDVEFEVV--GDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEED 596

Query: 679 GNGNGDVGTPD-SKKRKVDSSDESLPAKKVRTDEK 712
            + N DV   + S+KRK+D   E+L AK+ R ++K
Sbjct: 597 SSNNADVSEEERSRKRKLDEK-ENLSAKRSRIEQK 630

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	726
FB|FBgn0029113	700	Uba2 "Smt3 activating enzyme 2	0.370	0.384	0.494	6.4e-132
UNIPROTKB|Q9UBT2	640	UBA2 "SUMO-activating enzyme s	0.392	0.445	0.434	1.3e-123
UNIPROTKB|A4FV12	640	UBA2 "UBA2 protein" [Bos tauru	0.392	0.445	0.434	5.7e-123
UNIPROTKB|E2R837	640	UBA2 "Uncharacterized protein"	0.392	0.445	0.431	3.1e-122
UNIPROTKB|Q642Q1	641	uba2-a "SUMO-activating enzyme	0.392	0.444	0.437	1.1e-121
UNIPROTKB|Q7ZY60	641	uba2-b "SUMO-activating enzyme	0.392	0.444	0.437	3.5e-121
UNIPROTKB|F1NV31	591	UBA2 "Uncharacterized protein"	0.194	0.238	0.758	9.3e-121
UNIPROTKB|Q28GH3	641	uba2 "SUMO-activating enzyme s	0.392	0.444	0.441	2.2e-120
ZFIN|ZDB-GENE-040426-2681	651	uba2 "ubiquitin-like modifier	0.391	0.436	0.442	3.2e-119
MGI|MGI:1858313	638	Uba2 "ubiquitin-like modifier	0.392	0.446	0.434	6.7e-119

FB|FBgn0029113 Uba2 "Smt3 activating enzyme 2" [Drosophila melanogaster (taxid:7227)]

 Score = 681 (244.8 bits), Expect = 6.4e-132, Sum P(3) = 6.4e-132
 Identities = 135/273 (49%), Positives = 175/273 (64%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
             NG+++R +TR WA    YD  KLF KFF+ DI YL+ MS+LWKTRKAP P+ WDTL    
Sbjct:   252 NGNIMRINTRQWAKDSNYDAGKLFNKFFNEDITYLLRMSNLWKTRKAPVPVQWDTLLPE- 310

Query:   417 AGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDF 476
              GSS +      +  +VWS+ ECA+VF  S++EL   F   +E D+ L WDKDD+PAMDF
Sbjct:   311 -GSSGDQKDVAKQHHKVWSIEECAQVFANSLKELSANF-LKLEGDDTLAWDKDDQPAMDF 368

Query:   477 VAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQ 536
             VAACAN+R+H+F I  KSRF+IKSMAGNIIPAIAT+NAI AG+ V+ A  VL+A++  C+
Sbjct:   369 VAACANVRSHIFDIERKSRFEIKSMAGNIIPAIATTNAITAGISVMRAFKVLEAKWEQCK 428

Query:   537 TVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTL 596
              VY R +PN R+  +VP+  L  PNP C VC+  P  T+ +D  +M + E  + VL KTL
Sbjct:   429 AVYARLRPNARNHFLVPDASLPGPNPNCHVCASDPAITLKIDTKRMRIKELRDEVLVKTL 488

Query:   597 NMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL 629
             NM    DV                TE N+ K L
Sbjct:   489 NM-LNPDVTVQSNGSILISSEEGETECNDGKLL 520

GO:0004839 "ubiquitin activating enzyme activity" evidence=NAS

GO:0008641 "small protein activating enzyme activity" evidence=ISS;NAS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;NAS

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0031510 "SUMO activating enzyme complex" evidence=ISS

GO:0019950 "SMT3-dependent protein catabolic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0006959 "humoral immune response" evidence=IMP

UNIPROTKB|Q9UBT2 UBA2 "SUMO-activating enzyme subunit 2" [Homo sapiens (taxid:9606)]

 Score = 606 (218.4 bits), Expect = 1.3e-123, Sum P(3) = 1.3e-123
 Identities = 127/292 (43%), Positives = 177/292 (60%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVW---DTLS 413
             +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W    +  
Sbjct:   232 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG 291

Query:   414 DAVAGSSKETDGG-GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKP 472
             +    S ++ +   GLKDQ+V  V   AR+F +S+  L+       +  E L+WDKDD  
Sbjct:   292 EETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAE-LIWDKDDPS 350

Query:   473 AMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARF 532
             AMDFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  + 
Sbjct:   351 AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKI 410

Query:   533 SSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVL 592
               C+T++L K+PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   ++ ++
Sbjct:   411 DQCRTIFLNKQPNPRKKLLVPCA-LDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIV 469

Query:   593 KKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
             K+   M A    +               TEANN K L E G+    R+ A D
Sbjct:   470 KEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 521

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0019948 "SUMO activating enzyme activity" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

UNIPROTKB|A4FV12 UBA2 "UBA2 protein" [Bos taurus (taxid:9913)]

 Score = 607 (218.7 bits), Expect = 5.7e-123, Sum P(3) = 5.7e-123
 Identities = 127/292 (43%), Positives = 178/292 (60%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVW---DTLS 413
             +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W    +  
Sbjct:   232 DGDIKRVSTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG 291

Query:   414 DAVAGSSKETDGG-GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKP 472
             +  + S ++ +   GLKDQ+V  V   A +F +S+  L+       +  E L+WDKDD  
Sbjct:   292 EETSASDQQNEPQLGLKDQQVLDVKSYACLFSKSIETLRVHLAEKGDGAE-LIWDKDDPS 350

Query:   473 AMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARF 532
             AMDFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  + 
Sbjct:   351 AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKI 410

Query:   533 SSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVL 592
               C+T++L K+PN R +++VP   L APNP C VC+ KP+ T+ L+V K+TV   ++ ++
Sbjct:   411 DQCRTIFLNKQPNPRKKLLVPCA-LDAPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIV 469

Query:   593 KKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
             K+   M A    +               TEANN K L E G+    R+ A D
Sbjct:   470 KEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 521

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|E2R837 UBA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 598 (215.6 bits), Expect = 3.1e-122, Sum P(3) = 3.1e-122
 Identities = 126/292 (43%), Positives = 176/292 (60%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVW---DTLS 413
             +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W    +  
Sbjct:   232 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG 291

Query:   414 DAVAGSSKETDGG-GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKP 472
             +    S ++ +   GLKDQ+V  V   A +F +S+  L+       +  E L+WDKDD  
Sbjct:   292 EETNASDQQNEPQLGLKDQQVLDVKSYACLFSKSIETLRVHLAEKGDGAE-LIWDKDDPS 350

Query:   473 AMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARF 532
             AMDFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  + 
Sbjct:   351 AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKI 410

Query:   533 SSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVL 592
               C+T++L K+PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   ++ ++
Sbjct:   411 DQCRTIFLNKQPNPRKKLLVPCA-LDRPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIV 469

Query:   593 KKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
             K+   M A    +               TEANN K L E G+    R+ A D
Sbjct:   470 KEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 521

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|Q642Q1 uba2-a "SUMO-activating enzyme subunit 2-A" [Xenopus laevis (taxid:8355)]

 Score = 609 (219.4 bits), Expect = 1.1e-121, Sum P(3) = 1.1e-121
 Identities = 127/290 (43%), Positives = 182/290 (62%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
             +GD+ R ST+ WA + GYDP KLF K F  DI+YL++M  LW+ RK P PL W +L +  
Sbjct:   232 DGDIKRVSTKQWAKSTGYDPIKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKE 291

Query:   417 AGSSKETDGG--GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAM 474
               S  + +    GLKDQ+V +VA  A++F +SV  L+ +     +  E LVWDKDD PAM
Sbjct:   292 NCSEIQNESSLLGLKDQKVLNVASYAQLFSKSVETLREQLREKGDGAE-LVWDKDDVPAM 350

Query:   475 DFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSS 534
             DFV A AN+R H+FS+  KS+FD+KSMAGNIIPAIAT+NA+++GL+VL  + +L      
Sbjct:   351 DFVTAAANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQ 410

Query:   535 CQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK 594
             C+TV+L K+PN R +++VP   L  PNP+C VC+ KP+ T+ L+V K+TV   ++ +LK+
Sbjct:   411 CRTVFLNKQPNPRKKLLVPCS-LDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKE 469

Query:   595 TLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
                M A    +               T+ANN + + E G+  S ++ A D
Sbjct:   470 KFAMVAPDVQIEDGKGTILISSEAGETDANNHRKISEFGIRNSSQLQADD 519

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|Q7ZY60 uba2-b "SUMO-activating enzyme subunit 2-B" [Xenopus laevis (taxid:8355)]

 Score = 609 (219.4 bits), Expect = 3.5e-121, Sum P(3) = 3.5e-121
 Identities = 127/290 (43%), Positives = 182/290 (62%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
             +GD+ R ST+ WA + GYDP KLF K F  DI+YL++M  LW+ RK P PL W +L +  
Sbjct:   232 DGDIKRVSTKQWAKSTGYDPIKLFNKLFRDDIKYLLTMDRLWRKRKPPIPLEWASLHNKE 291

Query:   417 AGSSKETDGG--GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAM 474
               S  + +    GLKDQ+V +VA  A++F +SV  L+ +     +  E LVWDKDD PAM
Sbjct:   292 NCSEIQNESSLLGLKDQKVLNVASYAQLFSKSVETLREQLREKGDGAE-LVWDKDDVPAM 350

Query:   475 DFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSS 534
             DFV A AN+R H+FS+  KS+FD+KSMAGNIIPAIAT+NA+++GL+VL  + +L      
Sbjct:   351 DFVTAAANLRMHIFSMNMKSKFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQ 410

Query:   535 CQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK 594
             C+TV+L K+PN R +++VP   L  PNP+C VC+ KP+ T+ L+V K+TV   ++ +LK+
Sbjct:   411 CRTVFLNKQPNPRKKLLVPCS-LDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKE 469

Query:   595 TLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
                M A    +               T+ANN + + E G+  S ++ A D
Sbjct:   470 KFAMVAPDVQIEDGKGTILISSEAGETDANNHRKISEFGIRNSSQLQADD 519

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

UNIPROTKB|F1NV31 UBA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 594 (214.2 bits), Expect = 9.3e-121, Sum P(3) = 9.3e-121
 Identities = 107/141 (75%), Positives = 125/141 (88%)

Query:   143 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 202
             +LNRQFLF K+HVG+SKAQVA+ S L F P+ANI+A+H SI++ D+ V +F+QFTLVMNA
Sbjct:    10 NLNRQFLFQKKHVGRSKAQVAKESVLQFYPEANIIAYHDSIMNPDYNVEFFRQFTLVMNA 69

Query:   203 LDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTI 262
             LDNRAARNHVNRMCLA++VPLIESGTAGY GQV +IKKG T+CYEC PKP  KT+PGCTI
Sbjct:    70 LDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTVIKKGVTECYECHPKPTQKTFPGCTI 129

Query:   263 RNTPSEPIHCIVWAKHLFNYL 283
             RNTPSEPIHCIVWAK+LFN L
Sbjct:   130 RNTPSEPIHCIVWAKYLFNQL 150

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|Q28GH3 uba2 "SUMO-activating enzyme subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 624 (224.7 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
 Identities = 128/290 (44%), Positives = 181/290 (62%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
             +GD+ R ST+ WA + GYDP KLF K F  DI+YL++M  LW+ RK P PL W +L +  
Sbjct:   232 DGDIKRVSTKQWAKSTGYDPIKLFNKLFRDDIKYLLTMDRLWRKRKPPVPLEWSSLHNKE 291

Query:   417 AGSSKETDGG--GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAM 474
               S  + +    GLKDQ+V  V  CA++F +SV  L+ +        E LVWDKDD PAM
Sbjct:   292 NCSETQNESSLQGLKDQKVLDVTSCAQLFSKSVETLREQLREKGNGAE-LVWDKDDPPAM 350

Query:   475 DFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSS 534
             DFV A AN+R H+FS+  KSRFD+KSMAGNIIPAIAT+NA+++GL+VL  + +L      
Sbjct:   351 DFVTAAANLRMHIFSMNMKSRFDVKSMAGNIIPAIATTNAVISGLIVLEGLKILSGNTEQ 410

Query:   535 CQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK 594
             C+TV+L K+PN R +++VP   L  PNP+C VC+ KP+ T+ L+V K+TV   ++ +LK+
Sbjct:   411 CRTVFLNKQPNPRKKLLVPCS-LDPPNPSCYVCAIKPEVTVKLNVHKVTVQMLQDKILKE 469

Query:   595 TLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
                M A    +               T+ANN++ + E G+  S ++ A D
Sbjct:   470 KFAMVAPDVQIEDGKGTILISSEAGETDANNNRKISEFGIRNSSQLQADD 519

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

ZFIN|ZDB-GENE-040426-2681 uba2 "ubiquitin-like modifier activating enzyme 2" [Danio rerio (taxid:7955)]

 Score = 609 (219.4 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
 Identities = 132/298 (44%), Positives = 185/298 (62%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAK----------FFDADIRYLISMSDLWKTRKAPQP 406
             +GD+ R ST+ WA + GYDP KLF K           F  DI YL++M  LWK RKAP P
Sbjct:   233 DGDIKRVSTKEWARSTGYDPIKLFNKVSALSQTSPYLFKDDIMYLLTMDKLWKKRKAPLP 292

Query:   407 LVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVW 466
             L W+ ++  +AGS ++  G GLKDQ+V  V   A++F+ SV  L+++     +  E LVW
Sbjct:   293 LEWEEINQ-LAGSQEQVIGSGLKDQQVLGVQGYAQLFQHSVETLRSQLKEKGDGAE-LVW 350

Query:   467 DKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIH 526
             DKDD PAMDFV A +N+R +VFS+  KSRFD+KSMAGNIIPAIAT+NA++AGL+VL A+ 
Sbjct:   351 DKDDPPAMDFVTAASNLRMNVFSMNMKSRFDVKSMAGNIIPAIATTNAVIAGLIVLEALK 410

Query:   527 VLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAE 586
             +L + F  C+T++L K+PN R +++VP   L  PN +C VC+ KP+ T+ L+V K  V  
Sbjct:   411 ILNSDFEQCRTIFLNKQPNPRKKLLVPCA-LDPPNASCYVCASKPEVTVKLNVHKTMVQA 469

Query:   587 FEEAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
              ++ +LK+   M A    +               TEANN+K L + G+    R+ A D
Sbjct:   470 LQDKILKEKFGMVAPDVQIEDGKGTILISSEEGETEANNNKFLSDFGIRNGSRLQADD 527

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

MGI|MGI:1858313 Uba2 "ubiquitin-like modifier activating enzyme 2" [Mus musculus (taxid:10090)]

 Score = 606 (218.4 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
 Identities = 126/290 (43%), Positives = 177/290 (61%)

Query:   357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVW-DTLSDA 415
             +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W +  S  
Sbjct:   232 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQG 291

Query:   416 VAGSSKETDGG-GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAM 474
              A + ++ +   GLKDQ+V  V   A +F +S+  L+       +  E L+WDKDD PAM
Sbjct:   292 EANADQQNEPQLGLKDQQVLDVKSYASLFSKSIETLRVHLAEKGDGAE-LIWDKDDPPAM 350

Query:   475 DFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSS 534
             DFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  +   
Sbjct:   351 DFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQ 410

Query:   535 CQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK 594
             C+T++L K+PN R +++VP   L  PN  C VC+ KP+ T+ L+V K+TV   ++ ++K+
Sbjct:   411 CRTIFLNKQPNPRKKLLVPCA-LDPPNTNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKE 469

Query:   595 TLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
                M A    +               TEANN K L + G+    R+ A D
Sbjct:   470 KFAMVAPDVQIEDGKGTILISSEEGETEANNPKKLSDFGIRNGSRLQADD 519

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0019948 "SUMO activating enzyme activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z1F9	SAE2_MOUSE	6, ., 3, ., 2, ., -	0.4505	0.6983	0.7946	yes	N/A
O42939	UBA2_SCHPO	No assigned EC number	0.3620	0.6143	0.7101	yes	N/A
Q9UBT2	SAE2_HUMAN	6, ., 3, ., 2, ., -	0.4185	0.7837	0.8890	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	726
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-103
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	2e-55
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	6e-55
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	4e-44
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	4e-37
pfam00899	134	pfam00899, ThiF, ThiF family	4e-31
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	6e-29
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	1e-27
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	2e-27
pfam02134	66	pfam02134, UBACT, Repeat in ubiquitin-activating (	8e-26
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	3e-23
pfam10585	44	pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e	5e-20
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	7e-16
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	1e-15
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	3e-15
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	4e-15
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	3e-14
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	3e-14
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	5e-14
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	6e-14
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	6e-14
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	9e-14
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	3e-13
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-13
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-12
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-12
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	7e-12
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	2e-11
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	4e-11
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-10
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	1e-10
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	2e-10
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	2e-10
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	1e-08
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	1e-08
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	2e-08
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	3e-08
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	3e-08
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	7e-08
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	1e-07
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	3e-07
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	5e-07
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	8e-07
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	6e-06
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	6e-06
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-05
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	3e-05
cd01486	307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	3e-05
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	6e-05
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	8e-05
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	8e-05
TIGR01381	664	TIGR01381, E1_like_apg7, E1-like protein-activatin	3e-04
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	5e-04
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	0.001
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	0.001
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	0.002
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	0.004
TIGR03736	244	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family pr	0.004

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  318 bits (817), Expect = e-103
 Identities = 127/266 (47%), Positives = 151/266 (56%), Gaps = 85/266 (31%)

Query: 21  KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80
           KVLVVGAGGIGCELLKNLVL+GF  I I+DLDTID+SNLNRQFL                
Sbjct: 1   KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFL---------------- 44

Query: 81  SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIR 140
                                                                       
Sbjct: 44  ------------------------------------------------------------ 44

Query: 141 FLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVM 200
                    F K+HVGKSKAQVA+ + L+FNP+  IVA+H +I   DF V +FKQF LV 
Sbjct: 45  ---------FRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVF 95

Query: 201 NALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGC 260
           NALDN AAR HVN+MCLA++VPLIESGT G+ GQV++IKKG+T+CYEC PK   KT+P C
Sbjct: 96  NALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC 155

Query: 261 TIRNTPSEPIHCIVWAKHLFNYLERL 286
           TIR+TPS+PIHCIVWAK LF    ++
Sbjct: 156 TIRSTPSQPIHCIVWAKSLFFLFNKV 181

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  191 bits (488), Expect = 2e-55
 Identities = 84/189 (44%), Positives = 101/189 (53%), Gaps = 53/189 (28%)

Query: 379 LFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAE 438
           LF K F  DI  L+SM +LWKTRK P PL W  L                          
Sbjct: 177 LFNKVFKDDIERLLSMEELWKTRKPPVPLSWKEL-------------------------- 210

Query: 439 CARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDI 498
                                      +DKDD+ A+DFVAA AN+R+HVF IP KSRFDI
Sbjct: 211 --------------------------TFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDI 244

Query: 499 KSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLT 558
           K MAGNIIPAIAT+NAI+AGL+VL A+ VL      C+TV+L  +PN R +++VP K L 
Sbjct: 245 KQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPNRRKRLLVPCK-LD 303

Query: 559 APNPTCPVC 567
            PNP C VC
Sbjct: 304 PPNPNCYVC 312

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score =  187 bits (477), Expect = 6e-55
 Identities = 88/260 (33%), Positives = 118/260 (45%), Gaps = 84/260 (32%)

Query: 21  KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80
           KVL+VGAGGIGCELLKNL L GF  I ++D+DTIDVSNLNRQF                 
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQF----------------- 43

Query: 81  SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIR 140
                                  LF  + +G+ K++VA  +  + NP+  +V +   +  
Sbjct: 44  -----------------------LFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80

Query: 141 FLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVM 200
                                                         DF   +F+QF +++
Sbjct: 81  --------------------------------------------EQDFNDTFFEQFHIIV 96

Query: 201 NALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGC 260
           NALDN  AR +VN M +   VPLIESGT G++G  ++I  G T+C EC   P  K +P C
Sbjct: 97  NALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMC 156

Query: 261 TIRNTPSEPIHCIVWAKHLF 280
           TI + P  P HCI WA+ L 
Sbjct: 157 TIASMPRLPEHCIEWARMLQ 176

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score =  160 bits (406), Expect = 4e-44
 Identities = 86/267 (32%), Positives = 114/267 (42%), Gaps = 97/267 (36%)

Query: 21  KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80
           K+LV+GAGG+GCELLKNL LSGF NI ++D+DTIDVSNLNRQFL                
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFL---------------- 44

Query: 81  SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIR 140
                                   F ++ +GK KA+VA          A  V        
Sbjct: 45  ------------------------FREKDIGKPKAEVA----------AKFV-------- 62

Query: 141 FLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVM 200
               N +                        P  N+  H   I   D    +++QF +++
Sbjct: 63  ----NDRV-----------------------PGVNVTPHFGKI--QDKDEEFYRQFNIII 93

Query: 201 NALDNRAARNHVNRMCL--------ASEVPLIESGTAGYEGQVELIKKGETKCYEC--DP 250
             LD+  AR  +N   +         S +PLI+ GT G++G   +I  G T C EC  D 
Sbjct: 94  CGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDL 153

Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAK 277
            P   T+P CTI NTP  P HCI +A 
Sbjct: 154 FPPQVTFPLCTIANTPRLPEHCIEYAS 180

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score =  144 bits (365), Expect = 4e-37
 Identities = 79/265 (29%), Positives = 106/265 (40%), Gaps = 87/265 (32%)

Query: 21  KVLVVGAGGIGCELLKNLVLSGFSN-----IEIVDLDTIDVSNLNRQFLFHKQHVGKSKA 75
           KV +VGAG IGCELLKN  L G        I + D+D I+ SNLNRQFL           
Sbjct: 1   KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFL----------- 49

Query: 76  QVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH 135
                                        F    VGK K++VA  +    NPD  I A  
Sbjct: 50  -----------------------------FRPHDVGKPKSEVAAAAVKAMNPDLKITA-- 78

Query: 136 TSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQ 195
                    NR        VG               P+   +          F   ++++
Sbjct: 79  -------LQNR--------VG---------------PETEHI----------FNDEFWEK 98

Query: 196 FTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAK 255
              V NALDN  AR +V+R C+    PL+ESGT G +G  +++    T+ Y     P  K
Sbjct: 99  LDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEK 158

Query: 256 TYPGCTIRNTPSEPIHCIVWAKHLF 280
           + P CT++N P+   H I WA+  F
Sbjct: 159 SIPLCTLKNFPNAIEHTIQWARDEF 183

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  118 bits (297), Expect = 4e-31
 Identities = 54/217 (24%), Positives = 80/217 (36%), Gaps = 86/217 (39%)

Query: 19  KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA 78
            S+VLVVGAGG+G    + L  +G   + +VD DT+++SNLNRQ LF +  +GK K    
Sbjct: 1   SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPK---- 56

Query: 79  RNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSI 138
                                               A+VA+      NPD  + A+    
Sbjct: 57  ------------------------------------AEVAKERLRAINPDVEVEAYPER- 79

Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTL 198
                                                        ++ +      K   L
Sbjct: 80  ---------------------------------------------LTPENLEELLKGVDL 94

Query: 199 VMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQV 235
           V++ALDN AAR  +N  C+   +PLI +G  G++GQV
Sbjct: 95  VVDALDNFAARYLLNDACVKRGIPLISAGALGFDGQV 131

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score =  123 bits (310), Expect = 6e-29
 Identities = 77/277 (27%), Positives = 110/277 (39%), Gaps = 91/277 (32%)

Query: 9   FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFS-----NIEIVDLDTIDVSNLNRQF 63
           F++ L++L     + +VG G IGCE+LKN  L G        I + D D I+ SNLNRQF
Sbjct: 413 FQQKLQNL----NIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQF 468

Query: 64  LFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSAL 123
           L                                        F   H+GK K+  A ++ L
Sbjct: 469 L----------------------------------------FRPHHIGKPKSYTAADATL 488

Query: 124 NFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSI 183
             NP   I A         H NR        VG     +                     
Sbjct: 489 KINPQIKIDA---------HQNR--------VGPETETI--------------------- 510

Query: 184 ISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGET 243
               F   ++++  +V+NALDN  AR +V+  CLA   PL+ESGT G +G  +++    T
Sbjct: 511 ----FNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLT 566

Query: 244 KCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLF 280
           + Y     P  K  P CT+++ P+   H I WA+  F
Sbjct: 567 ESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKF 603

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  111 bits (280), Expect = 1e-27
 Identities = 58/245 (23%), Positives = 85/245 (34%), Gaps = 87/245 (35%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           +K ++VLVVGAGG+G    + L  +G   + +VD D +++SNL RQ L  +  VG+ K  
Sbjct: 19  LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPK-- 76

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                                 A+ A       NPD  I A++ 
Sbjct: 77  --------------------------------------AEAAAERLRAINPDVEIEAYNE 98

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
            +                            A N             +I           +
Sbjct: 99  RL---------------------------DAENAEE----------LI---------AGY 112

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYEC-DPKPAAK 255
            LV++  DN A R  +N  C+    PL+     G+EGQV +   GE  CY C  P+P   
Sbjct: 113 DLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPP 172

Query: 256 TYPGC 260
             P C
Sbjct: 173 GVPSC 177

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  111 bits (279), Expect = 2e-27
 Identities = 63/257 (24%), Positives = 91/257 (35%), Gaps = 90/257 (35%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
               + +  +K S+VLVVGAGG+G    K L L+G   + IVD DT+++SNL RQFLF +
Sbjct: 19  GIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTE 78

Query: 68  QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
             VGK KA                                        +VA  +    NP
Sbjct: 79  ADVGKPKA----------------------------------------EVAAKALRKLNP 98

Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
              +VA+                                                 +  +
Sbjct: 99  LVEVVAYL----------------------------------------------ERLDEE 112

Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGE-TKCY 246
                  QF +V++  DN   R  +N  C+   +PL+  G  G+EGQV +I  G+ T CY
Sbjct: 113 NAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCY 172

Query: 247 EC---DPKPAAKTYPGC 260
            C   +  P       C
Sbjct: 173 RCLFPEKPPPGLVPTSC 189

Length = 254

>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein

 Score =  100 bits (251), Expect = 8e-26
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 465 VWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHA 524
            +DKDD   +DFV A AN+RA  + IP   RFD+K +AGNIIPAIAT+NAIVAG+VVL  
Sbjct: 1   EFDKDDDDHLDFVYAAANLRAQNYGIPPADRFDVKGIAGNIIPAIATTNAIVAGIVVLEL 60

Query: 525 IHVLQ 529
           + +L 
Sbjct: 61  LKILT 65

Length = 66

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 95.8 bits (239), Expect = 3e-23
 Identities = 33/71 (46%), Positives = 46/71 (64%)

Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80
          +VL+VG GG+G E+  NL  SG   I ++D DT+++SNLNRQFL  +  +GK KA+VA  
Sbjct: 1  RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR 60

Query: 81 SALNFNPDANI 91
               NP  N+
Sbjct: 61 RLNELNPGVNV 71

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site

 Score = 83.4 bits (207), Expect = 5e-20
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query: 243 TKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFN 281
           T+CYEC P P  K+ P CT+R+ PS P HCI WA+ LF 
Sbjct: 2   TECYECSPDPPEKSIPVCTLRSFPSTPEHCIEWARDLFE 40

Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2). This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP. Length = 44

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 74.6 bits (184), Expect = 7e-16
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           LNRQFL  +  +GK KA+VA       NP  N+ A    I   +   ++     LV++A+
Sbjct: 39  LNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNL-DDFLDGVDLVIDAI 97

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI 238
           DN A R  +NR C    +P+I++G  G  G +++I
Sbjct: 98  DNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVI 132

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 9  FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ 68
              L + +KK+KV + GAGG+G  +   L  SG  N+++VD D ++ SNLNRQ  F   
Sbjct: 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-IS 76

Query: 69 HVGKSKAQVARNSALNFNPDANI 91
           +G  K +  + + L  NP   I
Sbjct: 77 QIGMPKVEALKENLLEINPFVEI 99

Length = 212

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 467 DKDDKPA--MDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHA 524
           +KDD     MDF+ A +N+RA  +SIP   R   K +AG IIPAIAT+ A V GLV L  
Sbjct: 278 EKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLEL 337

Query: 525 IHVLQ 529
             V+ 
Sbjct: 338 YKVVD 342

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 462 EH-LVWDK----DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIV 516
           EH + W +    DD   + F+   +N RA  ++I   + F  K +AG IIPA+AT+NA+V
Sbjct: 166 EHCIEWARMLQWDDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVV 225

Query: 517 AGLVVL 522
           AG+  L
Sbjct: 226 AGVCAL 231

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 23/76 (30%), Positives = 45/76 (59%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
          ++ +++L++G  G+G E+ KNLVLSG  ++ I+D  T+   +L  QFL   + +G+++A+
Sbjct: 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAE 78

Query: 77 VARNSALNFNPDANIY 92
           +       NP   + 
Sbjct: 79 ASLERLRALNPRVKVS 94

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
          +  S VL++GAGG+G      L  +G   I IVD D +D+SNL RQ LF ++ VG+ K +
Sbjct: 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVE 78

Query: 77 VARNSALNFNPDANI 91
          VA       N D  +
Sbjct: 79 VAAQRLRELNSDIQV 93

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 10  EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQH 69
           E  LE  +K++ V VVG GG+G   ++ L  SG   I ++D+D + V+N NRQ       
Sbjct: 22  EDGLE-KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGD 80

Query: 70  VGKSKAQVARNSALNFNPDANIYYQVDF 97
           +GK K +V +      NP+  +    DF
Sbjct: 81  IGKPKVEVMKERIKQINPECEVTAINDF 108

Length = 263

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 27/81 (33%), Positives = 41/81 (50%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
          ++ + V VVG GG+G    + L  SG   + ++D D + VSNLNRQ       VGK K +
Sbjct: 9  LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVE 68

Query: 77 VARNSALNFNPDANIYYQVDF 97
          V      + NP+  +    +F
Sbjct: 69 VMAERIRDINPECEVDAVEEF 89

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 33/75 (44%), Positives = 48/75 (64%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           +K ++VLV+GAGG+G   L  L  +G   + IV+ D +D SNL RQ +  +  VG+SKAQ
Sbjct: 40  LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQ 99

Query: 77  VARNSALNFNPDANI 91
            AR+S +  NP  N+
Sbjct: 100 SARDSIVEINPLVNV 114

Length = 392

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 71.0 bits (174), Expect = 9e-14
 Identities = 30/83 (36%), Positives = 51/83 (61%)

Query: 9  FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ 68
          F+ D ++ +K S+VL+VG GG+GC   + L  +G  N+ ++D DT+ +SNL RQ L    
Sbjct: 14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDA 73

Query: 69 HVGKSKAQVARNSALNFNPDANI 91
          ++G+ K + A+++    NP   I
Sbjct: 74 NIGQPKVESAKDALTQINPHIAI 96

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query: 20  SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79
           ++VLV+GAGG+GC  +++L  +G   I ++D DT+DVSN++RQ LF    VG+ K +VA 
Sbjct: 42  ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA 101

Query: 80  NSALNFNPDANI 91
                  PD  +
Sbjct: 102 ERLKEIQPDIRV 113

Length = 370

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           +K + VL +G GG+G  LL  L  +G   I IVD D +D SNL RQ +     VGK K +
Sbjct: 36  LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIE 95

Query: 77  VARNSALNFNPDANIYYQVDFHLNR 101
            A+N  L  NP    Y QVD +  R
Sbjct: 96  SAKNRILEINP----YCQVDLYETR 116

Length = 390

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 67.9 bits (167), Expect = 1e-12
 Identities = 29/74 (39%), Positives = 42/74 (56%)

Query: 18  KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQV 77
           K ++VLVVG GG+GC   + L  +G   + +VD DT+ +SNL RQ L     +G+ K + 
Sbjct: 31  KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVES 90

Query: 78  ARNSALNFNPDANI 91
           AR +    NP   I
Sbjct: 91  ARAALARINPHIAI 104

Length = 245

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 69.9 bits (171), Expect = 3e-12
 Identities = 31/62 (50%), Positives = 38/62 (61%)

Query: 467 DKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIH 526
           D D    +DF+ A +N+RA  +SI    RF  K +AG IIPAIATS A V+GLV L  I 
Sbjct: 809 DDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIK 868

Query: 527 VL 528
           V 
Sbjct: 869 VT 870

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           L RQ LF ++ VG+ K +VA       N D  + A    + + +          LV++  
Sbjct: 61  LQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENL-ELLINNVDLVLDCT 119

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI-KKGETKCYECDPKPAAKTYPGCTI 262
           DN A R  +N  C+A   PLI +   G+ GQ+ +    GE  C  C     A T P C  
Sbjct: 120 DNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGPSCAT 179

Query: 263 R 263
            
Sbjct: 180 A 180

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN 80
          KV + GAGG+G  +   L  SG  N+++VD D ++ SNLNRQ  F    +G+ K +  + 
Sbjct: 1  KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKE 59

Query: 81 SALNFNPDANI 91
          +    NP   I
Sbjct: 60 NLREINPFVKI 70

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV--GKSK 74
          ++ +KVL++GAG +G E+ KNLVL+G  +I IVD   +   +L   F    +    G ++
Sbjct: 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNR 76

Query: 75 AQVARNSALNFNPDANI 91
          A  +       NP+  +
Sbjct: 77 AAASYEFLQELNPNVKL 93

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           L RQ L     +G+ K + AR +    NP   I     + +  D          LV++  
Sbjct: 72  LQRQVLHDDATIGQPKVESARAALARINPHIAIETI-NARLDDDELAALIAGHDLVLDCT 130

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAG-YEGQVELIK-KGETKCYEC 248
           DN A RN +NR C A++ PL+ SG A   EGQV +   + +  CY C
Sbjct: 131 DNVATRNQLNRACFAAKKPLV-SGAAIRMEGQVTVFTYQDDEPCYRC 176

Length = 245

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 33/76 (43%), Positives = 47/76 (61%)

Query: 20  SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79
           +KV V+GAGG+G   L  L  +G  +I I+D DT+D+SNL+RQ +     VG+ KA+ AR
Sbjct: 29  AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR 88

Query: 80  NSALNFNPDANIYYQV 95
            + L  NPD  +   V
Sbjct: 89  EAMLALNPDVKVTVSV 104

Length = 355

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 143 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 202
           +L RQ L    ++G+ K + A+++    NP   I   +  +  A+       +  +V++ 
Sbjct: 63  NLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELA-ALIAEHDIVVDC 121

Query: 203 LDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK-KGETKCYEC 248
            DN   RN +NR C A++VPL+       EGQV +   +    CY C
Sbjct: 122 TDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRC 168

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 27/69 (39%), Positives = 37/69 (53%)

Query: 20  SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR 79
           ++VL++GAGG+G      L  +G   + IVD D +D SNL RQ L  +  VG+ K   A 
Sbjct: 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA 195

Query: 80  NSALNFNPD 88
                 NPD
Sbjct: 196 QRLAALNPD 204

Length = 376

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           L RQ +  +  VG+SKAQ AR+S +  NP  N+  H    +     V  F Q+ L+++  
Sbjct: 82  LQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR-LDPSNAVELFSQYDLILDGT 140

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQV----ELIKKGETKCYEC---DPKP 252
           DN A R  VN   + +  P +      +EGQ     E    G    Y     +P P
Sbjct: 141 DNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPP 196

Length = 392

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 25/74 (33%), Positives = 37/74 (50%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
          ++ + V ++ A   G E+LKNLVL G  +  IVD   +D  +L   F      +GKS+A+
Sbjct: 18 LESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAE 77

Query: 77 VARNSALNFNPDAN 90
                   NPD N
Sbjct: 78 ATCELLQELNPDVN 91

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           L RQ L  +  VG+ K   A       NPD  + A     +++D      +   +V++  
Sbjct: 175 LQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER-VTSDNVEALLQDVDVVVDGA 233

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETK----CYEC---DPKPAAKT 256
           DN   R  +N  C+    PL+      +EGQV +   G  +    CY C   +P P    
Sbjct: 234 DNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELA 293

Query: 257 YPGCT 261
            P C 
Sbjct: 294 -PSCA 297

Length = 376

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 19  KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA 78
           KS VL+ G GG+G E+ KNL+L+G  ++ + D      S+L+ QF   ++ +GK++A+ +
Sbjct: 19  KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS 78

Query: 79  RNSALNFNPDANIYYQVDFH---LNRQFLFHKQHV 110
           +      NP    Y  V      L    L   Q V
Sbjct: 79  QARLAELNP----YVPVTVSTGPLTTDELLKFQVV 109

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 16  LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKA 75
           L   + + VVG GG+G    + L  +G   I ++D+D + V+N NRQ    + +VG +KA
Sbjct: 27  LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKA 86

Query: 76  QVARNSALNFNPDANIYYQVDF 97
           +V        NP+  +    DF
Sbjct: 87  EVMAERIRQINPECRVTVVDDF 108

Length = 268

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 13  LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK 72
           +   ++++ V + G GG+G  +  NL  +G   + +VD D ++ SNLNRQ       VG+
Sbjct: 15  IVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKAS-QVGE 73

Query: 73  SKAQVARNSALNFNP--DANIYYQVDFHLNRQFLFHKQHV-------GKSKAQVARNSAL 123
            K +  + +    NP  +   Y +     N    F    +        ++KA +  N+ L
Sbjct: 74  PKTEALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLV-NAVL 132

Query: 124 NFNPDANIVA-------HHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANI 176
               D  ++A          + I+   +++ F       G  K+   +   L   P   I
Sbjct: 133 EKYKDKYLIAASGLAGYDDANSIKTRKISKHFYL----CGDGKSDAKQGLGL-MAPRVQI 187

Query: 177 VAHHTS 182
            A H +
Sbjct: 188 CAAHQA 193

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
           +F  + ++ +KK+KV VVG GG+G  +   L  +G   I ++D  T ++SNLNRQ L  +
Sbjct: 16  IFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWE 75

Query: 68  QHVGK-SKAQVARNSALNFNPDANI 91
           + +GK  K   A+     FN D  I
Sbjct: 76  EDLGKNPKPLSAKWKLERFNSDIKI 100

Length = 231

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
          +++  VL++GAG +G    + LV +G   + IVD D ++ SNL RQ L+ +  V
Sbjct: 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV 75

Length = 339

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 23/75 (30%), Positives = 35/75 (46%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
          ++ S+V + G GG+G   L  L   G     I D D  ++ N NRQ       +G+ KA+
Sbjct: 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84

Query: 77 VARNSALNFNPDANI 91
          V      + NP+  I
Sbjct: 85 VLAEMVRDINPELEI 99

Length = 287

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 52.2 bits (125), Expect = 8e-07
 Identities = 26/81 (32%), Positives = 41/81 (50%)

Query: 7   GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFH 66
           G+F    ++ + ++KV + G GG+G   L  +V +G     I D D  +  N+NRQF   
Sbjct: 31  GLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGAR 90

Query: 67  KQHVGKSKAQVARNSALNFNP 87
               G+ K  V +  AL+ NP
Sbjct: 91  VPSFGRPKLAVMKEQALSINP 111

Length = 679

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 19  KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA 78
           KS VL+ G GG+G E+ KNLVL+G  ++ + D +     +L+  F   +  VG+++A+  
Sbjct: 24  KSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAV 83

Query: 79  RNSALNFNPDANIYYQVDFHLNRQFL 104
                  NP  ++        N +FL
Sbjct: 84  VKKLAELNPYVHV-SSSSVPFNEEFL 108

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNP--DANIVAHHTSIISADFGVNYFKQFTLVMN 201
           L  QFL   + +G+++A+ +       NP    ++     S    +F    F QF +V+ 
Sbjct: 61  LGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEF----FSQFDVVVA 116

Query: 202 ALDNRAARNHVNRMCLASEVPLIESGTAGYEGQV 235
              +RA    +N +C    V    +G  G  G V
Sbjct: 117 TELSRAELVKINELCRKLGVKFYATGVHGLFGFV 150

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 467 DKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVA 517
           D DD   ++++   A  RA  F+I   +    + +   IIPA+A++NAI+A
Sbjct: 194 DGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIA 244

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVG--KSK 74
          I++  VL+VGAG +G    + LV +G   + I D D ++ SNL RQ L+ ++     K K
Sbjct: 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81

Query: 75 AQVARNSALNFNPDANI 91
          A  A+      N +  I
Sbjct: 82 AIAAKEHLRKINSEVEI 98

Length = 338

>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV--GKSKAQVA 78
          K L++GAG +GC + +NL+  G  +I  VD   +  SN  RQ LF  +    GK KA+ A
Sbjct: 1  KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAA 60

Query: 79 RNSALNFNPDAN 90
                  P  +
Sbjct: 61 AERLKEIFPSID 72

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Length = 307

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           LNRQ       VGK K +V      + NP+  + A    +   +           V++A+
Sbjct: 51  LNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAI 110

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAG 230
           D+  A+  +   C   ++P+I S  AG
Sbjct: 111 DSIRAKVALIAYCRKRKIPVISSMGAG 137

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNA 202
            NRQ       +GK K +V +      NP+  + A +   I+ +   +   K F  V++A
Sbjct: 70  TNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN-DFITEENLEDLLSKGFDYVIDA 128

Query: 203 LDNRAARNHVNRMCLASEVPLIESGTAG 230
           +D+  A+  +   C  +++P+I S  AG
Sbjct: 129 IDSVRAKVALIAYCRRNKIPVISSMGAG 156

Length = 263

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 45.8 bits (108), Expect = 8e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query: 19  KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA 78
           +S+V + G GG+G   L  L  +G  N  + D D     NLNRQ+       G+ K  V 
Sbjct: 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVM 391

Query: 79  RNSALNFNPDANI 91
              AL+ NP  +I
Sbjct: 392 TERALSVNPFLDI 404

Length = 989

>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme Gsa7p/Apg7p

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV---G 71
           +   + KVL++GAG +GC + + L+  G  +I  VD   +  SN  RQ L + +     G
Sbjct: 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGG 393

Query: 72  KSKAQVARNS 81
           + KA+ A+ +
Sbjct: 394 RGKAETAQKA 403

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. Length = 664

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 144 LNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNAL 203
           LNRQ  F    +G  K +  + + L  NP   I AH+   I  D     FK   +V+ A 
Sbjct: 68  LNRQQYF-ISQIGMPKVEALKENLLEINPFVEIEAHNEK-IDEDNIEELFKDCDIVVEAF 125

Query: 204 DN--------RAARNHVNRMCLASEVPLIESGTAGYEGQVELIK 239
           DN             H  +  +A+      SG AGY G    IK
Sbjct: 126 DNAETKAMLVETVLEHPGKKLVAA------SGMAGY-GDSNSIK 162

Length = 212

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 143 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 202
           +++RQ LF    VG+ K +VA        PD  + A     ++A+  V       LV++ 
Sbjct: 80  NIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER-LTAENAVELLNGVDLVLDG 138

Query: 203 LDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG 241
            D+ A +  V      +  PL+      + G++ +   G
Sbjct: 139 SDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSG 177

Length = 370

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 143 HLNRQFLFHKQHVGK-SKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMN 201
           +LNRQ L  ++ +GK  K   A+     FN D  I       +S +      K   ++++
Sbjct: 66  NLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF-VGRLSEENIDEVLKGVDVIVD 124

Query: 202 ALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCY-ECDPKPAAKT 256
            LDN   R  ++       +PL+     G  GQV  I  G+TK   E  PK   K 
Sbjct: 125 CLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPKVKKKK 180

Length = 231

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 138 IIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFT 197
           ++   +L RQ +     VGK K + A+N  L  NP   +  + T  +S++  ++    + 
Sbjct: 72  VVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR-LSSENALDILAPYD 130

Query: 198 LVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYEC---DPKPAA 254
           +V++  DN   R  VN  C+    P +      +EGQ  +        Y     +P P  
Sbjct: 131 VVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPG 190

Query: 255 KTYPGC 260
              P C
Sbjct: 191 MV-PSC 195

Length = 390

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 145 NRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQ-FTLVMNAL 203
           NRQ    + +VG +KA+V        NP+  +       I+ D    Y    F+ V++A+
Sbjct: 71  NRQIHALRDNVGLAKAEVMAERIRQINPECRVTV-VDDFITPDNVAEYMSAGFSYVIDAI 129

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQVE 236
           D+   +  +   C  +++PL+ +G AG  GQ++
Sbjct: 130 DSVRPKAALIAYCRRNKIPLVTTGGAG--GQID 160

Length = 268

>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 13/73 (17%)

Query: 16 LIKKSKVLVVGAGGIGCELLKNLVL-----------SGFSNIEIVDLDTIDVSNLNRQFL 64
          L +   V++VGAGG G +++  L              G + + + D DT+  +N+ RQ  
Sbjct: 8  LSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLA-VTVYDDDTVSEANVGRQ-A 65

Query: 65 FHKQHVGKSKAQV 77
          F+   VG++KA V
Sbjct: 66 FYPADVGQNKAIV 78

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	726
KOG2013|consensus	603		100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
KOG2012|consensus	1013		100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
KOG2015|consensus	422		100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
PRK08223	287	hypothetical protein; Validated	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
PRK07411	390	hypothetical protein; Validated	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	99.98
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.97
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.97
PRK14851	679	hypothetical protein; Provisional	99.97
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.96
PRK14852	989	hypothetical protein; Provisional	99.96
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.96
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.96
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.96
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.95
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.95
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.95
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.95
KOG2017|consensus	427		99.95
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.95
PRK07877	722	hypothetical protein; Provisional	99.94
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.94
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.94
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.93
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.92
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.92
PRK06153	393	hypothetical protein; Provisional	99.9
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	99.88
KOG2336|consensus	422		99.87
KOG2014|consensus	331		99.86
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.85
KOG2018|consensus	430		99.8
KOG2337|consensus	669		99.79
KOG2016|consensus	523		99.79
KOG2012|consensus	1013		99.78
PF10585	45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	99.47
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.43
PF09358	125	UBA_e1_C: Ubiquitin-activating enzyme e1 C-termina	99.27
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	98.76
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.6
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	97.28
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.2
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.05
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.94
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	96.65
PF08825	84	E2_bind: E2 binding domain; InterPro: IPR014929 E1	96.55
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.48
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.42
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.08
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.93
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.48
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.19
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.92
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.72
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.22
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.12
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.8
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.61
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.59
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.57
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	93.35
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.33
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.21
PRK10637	457	cysG siroheme synthase; Provisional	92.99
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.72
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.71
PRK04148	134	hypothetical protein; Provisional	92.65
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	92.57
KOG2013|consensus	603		92.52
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.39
PRK00048	257	dihydrodipicolinate reductase; Provisional	92.22
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	92.13
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	91.43
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	91.42
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	91.38
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	91.35
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	91.24
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.09
PRK13940	414	glutamyl-tRNA reductase; Provisional	91.06
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	90.63
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.62
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	90.61
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	90.59
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.58
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.53
PTZ00117	319	malate dehydrogenase; Provisional	90.5
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	89.89
PLN02427	386	UDP-apiose/xylose synthase	89.84
PLN03209	576	translocon at the inner envelope of chloroplast su	89.82
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	89.71
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	89.68
PRK14982	340	acyl-ACP reductase; Provisional	89.56
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	89.46
PRK06197	306	short chain dehydrogenase; Provisional	89.42
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	89.22
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	89.12
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.1
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	89.02
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	88.98
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	88.85
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	88.79
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.73
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.7
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	88.63
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	88.46
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	88.35
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	88.14
PRK07063	260	short chain dehydrogenase; Provisional	88.11
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	87.97
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	87.89
PRK09242	257	tropinone reductase; Provisional	87.88
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	87.71
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	87.49
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	87.48
PLN00203	519	glutamyl-tRNA reductase	87.41
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.41
PRK05854	313	short chain dehydrogenase; Provisional	87.24
PRK09496	453	trkA potassium transporter peripheral membrane com	87.15
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.85
PRK08618	325	ornithine cyclodeaminase; Validated	86.78
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	86.75
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	86.73
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	86.71
PLN02206	442	UDP-glucuronate decarboxylase	86.66
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	86.58
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	86.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.52
PRK13403	335	ketol-acid reductoisomerase; Provisional	86.51
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	86.25
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	85.93
COG0281	432	SfcA Malic enzyme [Energy production and conversio	85.86
PRK06223	307	malate dehydrogenase; Reviewed	85.78
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.57
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	85.55
PRK13243	333	glyoxylate reductase; Reviewed	85.5
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.48
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	85.46
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	85.41
PRK11730	715	fadB multifunctional fatty acid oxidation complex	85.39
PRK08251	248	short chain dehydrogenase; Provisional	85.31
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	85.23
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	85.14
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.09
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	85.05
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	85.05
PRK12480	330	D-lactate dehydrogenase; Provisional	84.81
PRK08655	437	prephenate dehydrogenase; Provisional	84.81
PRK12367	245	short chain dehydrogenase; Provisional	84.78
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	84.68
PRK07062	265	short chain dehydrogenase; Provisional	84.58
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	84.56
PLN02928	347	oxidoreductase family protein	84.55
CHL00194	317	ycf39 Ycf39; Provisional	84.48
PRK08264	238	short chain dehydrogenase; Validated	84.44
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.38
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	84.3
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	84.28
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	84.23
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	84.22
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	84.18
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.1
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	84.02
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	83.98
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	83.98
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	83.97
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	83.95
PLN02695	370	GDP-D-mannose-3',5'-epimerase	83.94
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	83.83
PRK06841	255	short chain dehydrogenase; Provisional	83.67
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	83.64
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	83.58
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	83.58
PRK06057	255	short chain dehydrogenase; Provisional	83.52
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.38
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	83.33
KOG2015|consensus	422		83.22
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.18
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	83.09
PRK05479	330	ketol-acid reductoisomerase; Provisional	83.05
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	82.97
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.95
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	82.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	82.86
PLN02602	350	lactate dehydrogenase	82.76
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	82.58
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	82.57
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	82.37
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	82.35
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	82.25
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	82.23
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	82.22
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	82.05
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	82.05
PLN02166	436	dTDP-glucose 4,6-dehydratase	81.84
PRK06194	287	hypothetical protein; Provisional	81.67
PRK06487	317	glycerate dehydrogenase; Provisional	81.63
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	81.58
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	81.54
PRK07067	257	sorbitol dehydrogenase; Provisional	81.42
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	81.38
PLN00106	323	malate dehydrogenase	81.33
PLN02494	477	adenosylhomocysteinase	81.2
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	81.12
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	81.1
PRK06185	407	hypothetical protein; Provisional	81.09
PRK07417	279	arogenate dehydrogenase; Reviewed	81.08
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	81.07
PRK06436	303	glycerate dehydrogenase; Provisional	81.04
PRK12828	239	short chain dehydrogenase; Provisional	80.96
PTZ00075	476	Adenosylhomocysteinase; Provisional	80.93
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	80.92
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	80.85
PRK07774	250	short chain dehydrogenase; Provisional	80.73
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	80.73
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	80.7
PRK07060	245	short chain dehydrogenase; Provisional	80.68
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	80.65
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	80.65
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	80.63
PRK07574	385	formate dehydrogenase; Provisional	80.47
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	80.46
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	80.42
PRK09126	392	hypothetical protein; Provisional	80.32
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	80.32
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	80.25
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	80.2
PRK03562	621	glutathione-regulated potassium-efflux system prot	80.13
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	80.11
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	80.07
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	80.05
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	80.04

>KOG2013|consensus

Probab=100.00  E-value=1.8e-115  Score=940.33  Aligned_cols=496  Identities=48%  Similarity=0.770  Sum_probs=419.2

Q ss_pred             CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCC
Q psy9783          10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDA   89 (726)
Q Consensus        10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~   89 (726)
                      ..+.++++..+|||||||||||||++|+|+++||++|+|||+|||++|||||||||+++|||++||.+|+          
T Consensus         3 ~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~----------   72 (603)
T KOG2013|consen    3 PREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAA----------   72 (603)
T ss_pred             hHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHH----------
Confidence            3567888999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             ceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783          90 NIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN  169 (726)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~  169 (726)
                                                                                                 +.++.
T Consensus        73 ---------------------------------------------------------------------------~~v~~   77 (603)
T KOG2013|consen   73 ---------------------------------------------------------------------------KAVKQ   77 (603)
T ss_pred             ---------------------------------------------------------------------------HHHHH
Confidence                                                                                       67788


Q ss_pred             hCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecC
Q psy9783         170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECD  249 (726)
Q Consensus       170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~  249 (726)
                      |||++++++||++|++..|+..||++||+|+|||||.+||+|+|++|+.+++|||++|+.||.|||+++++|.|+||+|.
T Consensus        78 Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~  157 (603)
T KOG2013|consen   78 FNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECI  157 (603)
T ss_pred             hCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceeccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccCCCCCcchhhhhHh-HHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhcc
Q psy9783         250 PKPAAKTYPGCTIRNTPSEPIHCIVWAK-HLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILR  328 (726)
Q Consensus       250 ~~~~~~~~p~Cti~~~p~~~~h~i~~a~-~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~  328 (726)
                      +++.+++||+||||++|++|+|||+||| ++|++||+                 +..++...    .++          .
T Consensus       158 pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~-----------------~d~~~q~~----~~d----------~  206 (603)
T KOG2013|consen  158 PKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFG-----------------EDDDDQYG----RHD----------N  206 (603)
T ss_pred             CCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhc-----------------cccccccc----ccc----------c
Confidence            9999999999999999999999999999 69999999                 33222111    111          2


Q ss_pred             CCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcc
Q psy9783         329 LNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLV  408 (726)
Q Consensus       329 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~  408 (726)
                      .+|+..+       ..+.+.......+++..-.+.....|.....+.+.++|.++|..||+||+.|..+|+.|++|.||.
T Consensus       207 ~d~d~~e-------~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~  279 (603)
T KOG2013|consen  207 ADPDNCE-------DMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLS  279 (603)
T ss_pred             cCchhhh-------ccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcc
Confidence            2332211       000011111111222222222223454455667899999999999999999999999999999999


Q ss_pred             cCCCc-hhh---cCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHh
Q psy9783         409 WDTLS-DAV---AGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIR  484 (726)
Q Consensus       409 ~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLR  484 (726)
                      |.... ...   .+.....-..++.+|.+|++.++..+|..++..|.-+.++ ....-.+.|||||...|+||+||||+|
T Consensus       280 ~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~-~~~h~~l~fdKdd~~~~~FVaaaaNiR  358 (603)
T KOG2013|consen  280 IAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPK-ESDHWYLIFDKDDASTMEFVAAAANIR  358 (603)
T ss_pred             hhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCc-cCCCceEEEcCCcHHHHHHHHHHhhhh
Confidence            98752 111   1111111224567999999999999999999888655544 112233999999999999999999999


Q ss_pred             HHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCCCCCCC
Q psy9783         485 AHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTC  564 (726)
Q Consensus       485 A~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C  564 (726)
                      |+.|+||++|.|++|.|||||||||||||||||||+|+|++|+|+|++..|+++|+..+||.|++.++| ..+.||||+|
T Consensus       359 a~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~-~~~~~PNp~C  437 (603)
T KOG2013|consen  359 AHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLP-WALRPPNPNC  437 (603)
T ss_pred             hhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecc-cccCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 8899999999


Q ss_pred             CCCCCCCeEEEEEECCCCcHHHHHHHHHhcccCCccceeEEEecCCeEEEeccccccccccCCchhh-------hhhhcc
Q psy9783         565 PVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEH-------GLIISH  637 (726)
Q Consensus       565 ~vC~~~~~~tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~~~~G~ll~ss~e~e~~~nl~k~L~e-------lv~v~~  637 (726)
                      +||+..+ .+++++.+++||..|+|.|+|.+|+| . |+|++... .| ++++  ++++|++|+|+|       +|.+.|
T Consensus       438 ~vCs~~~-~~l~ln~~~~~~~~L~D~ivk~r~~~-~-pdvsll~~-~L-i~~~--d~e~n~~k~lsel~i~ngsli~~~~  510 (603)
T KOG2013|consen  438 PVCSEVP-LVLELNTRKSTLRDLVDKIVKTRLGY-L-PDVSLLDD-DL-IDDM--DFEDNLDKTLSELGILNGSLINVKD  510 (603)
T ss_pred             ccccccc-eEEEeccccchHHHHHHHHHHHHhcc-C-cccchhhh-hh-cccc--cchhhhhhhHHhhCCCCCceEeeec
Confidence            9999887 88999999999999999999999999 6 99988753 33 3333  899999999999       566666

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=1e-102  Score=931.33  Aligned_cols=519  Identities=27%  Similarity=0.408  Sum_probs=412.8

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCCcCCCCCCCccChhHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGF-----SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ   76 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv-----~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~   76 (726)
                      +.||+++||.++|++|++++|+||||||||||++|+||++||     |+|+|+|+|+||.|||||||||+.+|||++|++
T Consensus       402 Ydrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~  481 (1008)
T TIGR01408       402 YDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSY  481 (1008)
T ss_pred             hHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHH
Confidence            568999999999999999999999999999999999999999     899999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccC
Q psy9783          77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVG  156 (726)
Q Consensus        77 va~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg  156 (726)
                      +|+++++++||+++                                                                  
T Consensus       482 vaa~~l~~~Np~v~------------------------------------------------------------------  495 (1008)
T TIGR01408       482 TAADATLKINPQIK------------------------------------------------------------------  495 (1008)
T ss_pred             HHHHHHHHHCCCCE------------------------------------------------------------------
Confidence            99966666665554                                                                  


Q ss_pred             cchhhhHHHHHHhhCCCCeEEEEeccccc---ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccc
Q psy9783         157 KSKAQVARNSALNFNPDANIVAHHTSIIS---ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEG  233 (726)
Q Consensus       157 ~sk~~~ak~~~~~~np~~~i~~~~~~i~~---~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G  233 (726)
                                         |+++..++..   ..++.+||.++|+|++|+||+++|.++|++|+.+++|+|++|+.|++|
T Consensus       496 -------------------I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G  556 (1008)
T TIGR01408       496 -------------------IDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKG  556 (1008)
T ss_pred             -------------------EEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCcee
Confidence                               4444444422   235568999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcc
Q psy9783         234 QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRS  313 (726)
Q Consensus       234 ~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (726)
                      +++++.|+.|+||.|.++++++++|.|||+++|+.|+|||+|||++|+.+|+..+.       ..++|++..        
T Consensus       557 ~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~-------~~~~~~~~~--------  621 (1008)
T TIGR01408       557 NTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPS-------LVNKYLSSP--------  621 (1008)
T ss_pred             eEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHH-------HHHHHhhCh--------
Confidence            99999999999999999999999999999999999999999999999999995442       233333211        


Q ss_pred             cchHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHc
Q psy9783         314 QLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLIS  393 (726)
Q Consensus       314 ~~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~  393 (726)
                        .++.+.+.    ..++...            .+.+..-   ...+....+..| ++|+.||+.+|+++|+++|++||+
T Consensus       622 --~~~~~~~~----~~~~~~~------------~~~l~~i---~~~l~~~~p~~~-~~cv~~a~~~f~~~F~~~I~qLl~  679 (1008)
T TIGR01408       622 --SSAEEVLQ----KIQSGHS------------REGLEQI---IKLLSKEKPRNF-SQCVEWARLKFEKYFNNKALQLLH  679 (1008)
T ss_pred             --HHHHHHHH----hcCchhH------------HHHHHHH---HHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01111111    0000000            0001000   001111223456 589999999999999999999998


Q ss_pred             C----------CcccCC-CCCCCCcccCCCchhh-----cCCCcccCCCC---------------------------CCc
Q psy9783         394 M----------SDLWKT-RKAPQPLVWDTLSDAV-----AGSSKETDGGG---------------------------LKD  430 (726)
Q Consensus       394 ~----------~~~w~~-~~~P~pl~~~~~~~~~-----~~~~~~~~~~~---------------------------~~~  430 (726)
                      +          .+||++ +|+|+||+||..+..+     +.+...+..+|                           ..+
T Consensus       680 ~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~  759 (1008)
T TIGR01408       680 CFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSN  759 (1008)
T ss_pred             hCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcC
Confidence            7          899998 7999999999874321     11100000011                           122


Q ss_pred             ccccChH------HHHHHHHHHHHHHHHHhhhhh-----ccCCCccccCCChh--hHHHHHHHHHHhHHhcCCCCCCHHH
Q psy9783         431 QRVWSVA------ECARVFERSVRELKTKFDAAV-----EKDEHLVWDKDDKP--AMDFVAACANIRAHVFSIPEKSRFD  497 (726)
Q Consensus       431 ~~~~~~~------~~~~~f~~s~~~L~~~l~~~~-----~~~~~l~FDKDDd~--hmDFVtAAANLRA~nY~Ip~~s~~~  497 (726)
                      +++|+-+      ++...+.+.+++|.+++....     ....|++||||||.  |||||+|||||||+||+||++|||+
T Consensus       760 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~  839 (1008)
T TIGR01408       760 KKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFK  839 (1008)
T ss_pred             ceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHH
Confidence            3444421      111134567777877776532     23678999999985  9999999999999999999999999


Q ss_pred             HHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh--hcccchhhhccCCCCCCccccccccCCCCCCCCCCCCCCCeE-E
Q psy9783         498 IKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQAR--FSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQR-T  574 (726)
Q Consensus       498 vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k--~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~~~~~-t  574 (726)
                      +|+||||||||||||||+||||+|+|+||+++|+  ++.|||+|+|++        +|++.++||.|.|.+|.....| |
T Consensus       840 ~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nla--------lp~~~~seP~~~~~~~~~~~~~~t  911 (1008)
T TIGR01408       840 TKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLA--------IPLFVFTEPTEVRKTKIRNGISFT  911 (1008)
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhc--------cccccccCCCCCCceeecCceecc
Confidence            9999999999999999999999999999999984  799999999986        7889999999999999765566 5


Q ss_pred             E--EEECC-CCcHHHHHHHHHhcccCCccceeEEEecCC-eEEEeccccccccccCCchhhhhhhcccC---CCCCCCeE
Q psy9783         575 I--GLDVT-KMTVAEFEEAVLKKTLNMSAMVDVMVEASG-SVIISSEEGETEANNDKPLEHGLIISHRV---SARDGPEF  647 (726)
Q Consensus       575 l--~id~~-~~TL~~lid~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~e~~~nl~k~L~elv~v~~~~---~~~~~~~f  647 (726)
                      +  ++++. ++||++|+++|. +++|    .+|++.+.| ++||++++...+++|+++|+|++.-+.+.   +.++++.|
T Consensus       912 ~WDr~~i~~~~Tl~~~i~~~~-~~~~----~~v~~is~g~~~lY~~~~~~~~erl~~~l~el~~~~~k~~~~~~~~~l~~  986 (1008)
T TIGR01408       912 IWDRWTLHGDFTLLEFINAVK-EKYG----LEPTMVSQGVKLLYVPVMPGHAERLKLKMHKLVKPTTKKKLPPYRVHLTV  986 (1008)
T ss_pred             ceEEEEecCCCcHHHHHHHHH-HHhC----CeeEEEEcCceEEEeccchhhHHhcCCCHHHHHHHhccCCCCCCceEEEE
Confidence            5  66665 899999999994 5567    466888888 89999987777899999999999988876   45578999


Q ss_pred             EEEecCCC
Q psy9783         648 EILDQKDL  655 (726)
Q Consensus       648 eV~~~~~~  655 (726)
                      ||+|+++.
T Consensus       987 ~~~~~d~~  994 (1008)
T TIGR01408       987 SFACDDDG  994 (1008)
T ss_pred             EEEeecCC
Confidence            99998543

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2012|consensus

Probab=100.00  E-value=5.4e-99  Score=849.02  Aligned_cols=515  Identities=29%  Similarity=0.442  Sum_probs=413.9

Q ss_pred             cccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCC-----eEEEEeCCccCccCCCcCCCCCCCccChhHHHH
Q psy9783           3 TKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFS-----NIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQV   77 (726)
Q Consensus         3 ~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~-----~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~v   77 (726)
                      --|+++||...|+||.+.++++||||+||||++||++++|+|     .|+|+|+|.||.||||||||||..|||++|+++
T Consensus       414 D~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~  493 (1013)
T KOG2012|consen  414 DGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEV  493 (1013)
T ss_pred             ccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHH
Confidence            458999999999999999999999999999999999999995     799999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCc
Q psy9783          78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGK  157 (726)
Q Consensus        78 a~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~  157 (726)
                      |+.                                                                             
T Consensus       494 AA~-----------------------------------------------------------------------------  496 (1013)
T KOG2012|consen  494 AAA-----------------------------------------------------------------------------  496 (1013)
T ss_pred             HHH-----------------------------------------------------------------------------
Confidence            994                                                                             


Q ss_pred             chhhhHHHHHHhhCCCCeEEEEeccc---ccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccce
Q psy9783         158 SKAQVARNSALNFNPDANIVAHHTSI---ISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQ  234 (726)
Q Consensus       158 sk~~~ak~~~~~~np~~~i~~~~~~i---~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~  234 (726)
                              ++..+||+++|.++..++   ++..|+++||.+.|+|.+||||+.||+|+++.|+.+.+||+++||.|++|+
T Consensus       497 --------A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn  568 (1013)
T KOG2012|consen  497 --------AARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN  568 (1013)
T ss_pred             --------HHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc
Confidence                    445555556666666666   567899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhccc
Q psy9783         235 VELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQ  314 (726)
Q Consensus       235 v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (726)
                      +++++|+.|+.|....+|+++++|.||++|||..++|||+|||+.|+.+|..       .++..+.|+.+..        
T Consensus       569 tQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~-------~~e~vN~yls~p~--------  633 (1013)
T KOG2012|consen  569 TQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQ-------SAENVNKYLSDPV--------  633 (1013)
T ss_pred             eeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhC-------CHHHHHHHhcCch--------
Confidence            9999999999999999999999999999999999999999999999999993       3344555554322        


Q ss_pred             chHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcC
Q psy9783         315 LPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM  394 (726)
Q Consensus       315 ~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~  394 (726)
                         +.+....-  ..+|...             ..+   ....+.+. ..++.| .+|+.||+..|+++|++.|.+||..
T Consensus       634 ---f~e~sl~~--~~~~~~~-------------~~l---~~v~~~l~-~rp~~~-~dCv~warl~f~~~f~~~ikqLl~~  690 (1013)
T KOG2012|consen  634 ---FYETSLKL--IGEPQSL-------------ETL---ERVVDCLS-ERPQNW-QDCVEWARLHFEKYFHNRIKQLLHN  690 (1013)
T ss_pred             ---HHHHHHhh--ccCcchh-------------HHH---HHHHHHhh-cCCccH-HHHHHHHHHHHHHHhhHHHHHhhcC
Confidence               11111000  1111110             000   00111122 344667 5999999999999999999999973


Q ss_pred             ----------CcccCCC-CCCCCcccCCCch-hh----cCCCcccCCCCCCcccccC-----------------------
Q psy9783         395 ----------SDLWKTR-KAPQPLVWDTLSD-AV----AGSSKETDGGGLKDQRVWS-----------------------  435 (726)
Q Consensus       395 ----------~~~w~~~-~~P~pl~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~-----------------------  435 (726)
                                .+||+++ |+|+||+||..+. +.    +++...+..+|++..+-|.                       
T Consensus       691 FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~  770 (1013)
T KOG2012|consen  691 FPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIV  770 (1013)
T ss_pred             CCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeec
Confidence                      8999995 9999999998753 11    1111111112221100000                       


Q ss_pred             hHH------HHHHH-HHHHHHHHHHhhhhh----ccCCCccccCCCh--hhHHHHHHHHHHhHHhcCCCCCCHHHHHHhh
Q psy9783         436 VAE------CARVF-ERSVRELKTKFDAAV----EKDEHLVWDKDDK--PAMDFVAACANIRAHVFSIPEKSRFDIKSMA  502 (726)
Q Consensus       436 ~~~------~~~~f-~~s~~~L~~~l~~~~----~~~~~l~FDKDDd--~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IA  502 (726)
                      +.+      ...+- ..++.+|...+....    ....|+.||||||  +|||||+|||||||.||+||+++|+++|+||
T Consensus       771 ~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~Ia  850 (1013)
T KOG2012|consen  771 VEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIA  850 (1013)
T ss_pred             ccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheee
Confidence            000      00111 247778887776531    1456899999998  5999999999999999999999999999999


Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHhhh--hcccchhhhccCCCCCCccccccccCCCCCCCCCCCCC-CCeEEE--EE
Q psy9783         503 GNIIPAIATSNAIVAGLVVLHAIHVLQAR--FSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSP-KPQRTI--GL  577 (726)
Q Consensus       503 GnIIPAIATTnAIVAGLvvlEl~KlL~~k--~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~-~~~~tl--~i  577 (726)
                      |+||||||||||+|+||+|+|+||++.|+  +++|||+|+||+        +|++.+++|-|.|.+-.. +.+||+  |+
T Consensus       851 GkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLA--------lp~f~~~ep~~~pk~~~~~~~~~tlWdR~  922 (1013)
T KOG2012|consen  851 GKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLA--------LPFFSFAEPLAAPKVQYHNDLSWTLWDRW  922 (1013)
T ss_pred             eeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhccc--------ccceeecccCCCcceeeecccceeeeEEE
Confidence            99999999999999999999999999994  899999999997        788999999998765543 336777  88


Q ss_pred             ECC-CCcHHHHHHHHHhcccCCccceeEEEecCC-eEEEeccccccccccCCchhhhhhhcccC---CCCCCCeEEEEec
Q psy9783         578 DVT-KMTVAEFEEAVLKKTLNMSAMVDVMVEASG-SVIISSEEGETEANNDKPLEHGLIISHRV---SARDGPEFEILDQ  652 (726)
Q Consensus       578 d~~-~~TL~~lid~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~e~~~nl~k~L~elv~v~~~~---~~~~~~~feV~~~  652 (726)
                      +++ ++||++|++++++ +.|    ..|+|.+.| +++|++++....++|++++.|++..+.+.   +.+..+.+||+|+
T Consensus       923 ~v~g~~tL~~~L~~~~~-~~g----l~i~mls~G~~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~  997 (1013)
T KOG2012|consen  923 EVKGEPTLREFLDHLEE-QHG----LEITMLSQGVSLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACE  997 (1013)
T ss_pred             EecCCCCHHHHHHHHhh-hcC----ceEEEEeccceeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecC
Confidence            887 5999999999964 556    356888888 89999999999999999999999977765   4566789999999


Q ss_pred             C
Q psy9783         653 K  653 (726)
Q Consensus       653 ~  653 (726)
                      +
T Consensus       998 d  998 (1013)
T KOG2012|consen  998 D  998 (1013)
T ss_pred             C
Confidence            5

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=100.00  E-value=1.9e-92  Score=778.32  Aligned_cols=398  Identities=35%  Similarity=0.556  Sum_probs=338.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeee
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGF-----SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQV   95 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv-----~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~   95 (726)
                      ||+||||||+|||++|+||++||     |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|.   
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~---   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT---   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEE---
Confidence            69999999999999999999999     9999999999999999999999999999999999997666666665544   


Q ss_pred             ccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCe
Q psy9783          96 DFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN  175 (726)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~  175 (726)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (435)
T cd01490          78 --------------------------------------------------------------------------------   77 (435)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecccc---cccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecCCCC
Q psy9783         176 IVAHHTSII---SADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKP  252 (726)
Q Consensus       176 i~~~~~~i~---~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~~  252 (726)
                        ++..++.   +..++.+||+++|+|++|+||+++|.++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|..++
T Consensus        78 --a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p  155 (435)
T cd01490          78 --ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDP  155 (435)
T ss_pred             --EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCC
Confidence              4444432   12355789999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCcc
Q psy9783         253 AAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPF  332 (726)
Q Consensus       253 ~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~  332 (726)
                      +++++|.||++++|+.|+|||+|||++|+.+|+...                 .  ++                   +  
T Consensus       156 ~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~-----------------~--~~-------------------~--  195 (435)
T cd01490         156 PEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPP-----------------E--NV-------------------N--  195 (435)
T ss_pred             CCCCCCCccccCCCCCchHHHHHHHHHHHHHhccch-----------------H--HH-------------------H--
Confidence            889999999999999999999999999999999321                 1  01                   0  


Q ss_pred             ccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcC----------CcccCC-C
Q psy9783         333 TVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM----------SDLWKT-R  401 (726)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~----------~~~w~~-~  401 (726)
                                     ..                  +.++|+.||+.+|+++|+++|++||++          .+||++ +
T Consensus       196 ---------------~~------------------~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~k  242 (435)
T cd01490         196 ---------------QY------------------LFEDCVRWARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPK  242 (435)
T ss_pred             ---------------Hh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCC
Confidence                           00                  025899999999999999999999985          899998 6


Q ss_pred             CCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChh--hHHHHHH
Q psy9783         402 KAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKP--AMDFVAA  479 (726)
Q Consensus       402 ~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~--hmDFVtA  479 (726)
                      |+|+|++||..+..                        ...|..+...|..+.-.      -..||||||.  |||||+|
T Consensus       243 r~P~p~~fd~~~~~------------------------h~~fv~~~a~l~a~~~~------~~~FeKDdd~n~h~~fi~a  292 (435)
T cd01490         243 RCPTPLEFDVNNPL------------------------HLDFVLAAANLYAEVYG------IPGFEKDDDTNFHMDFITA  292 (435)
T ss_pred             CCCCCCCCCCCCHH------------------------HHHHHHHHHHHHHHhcC------CCccccCCchhHHHHHHHH
Confidence            89999999975321                        12354455555443221      1229999984  9999999


Q ss_pred             HHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhh--hcccchhhhccCCCCCCccccccccC
Q psy9783         480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQAR--FSSCQTVYLRKKPNHRDQMIVPEKYL  557 (726)
Q Consensus       480 AANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k--~e~~rn~flnl~pn~~~~~~vP~~~~  557 (726)
                      ||||||+||+|++.||+++|+|||||||||||||||||||+|+|+||+|+++  ++.|||+|+|++        +|.+.+
T Consensus       293 ~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla--------~p~~~~  364 (435)
T cd01490         293 ASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLA--------LPFFAF  364 (435)
T ss_pred             hhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhcc--------CCcccc
Confidence            9999999999999999999999999999999999999999999999999984  799999999997        677888


Q ss_pred             CCCCC-CCCCCCCCCeEEE--EEECC-CCcHHHHH-HHHHhcccCCccceeEEEecCC-eEEEecccc
Q psy9783         558 TAPNP-TCPVCSPKPQRTI--GLDVT-KMTVAEFE-EAVLKKTLNMSAMVDVMVEASG-SVIISSEEG  619 (726)
Q Consensus       558 ~ePnp-~C~vC~~~~~~tl--~id~~-~~TL~~li-d~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~  619 (726)
                      +||.+ .+..|....+||+  +++++ ++||++|+ +++ ++++|    .+|++.+.| +++|++++.
T Consensus       365 ~~p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~-~~~~~----~~v~~i~~g~~~ly~~~~~  427 (435)
T cd01490         365 SEPIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYF-KEKYG----LEVTMLSQGVSMLYSSFMP  427 (435)
T ss_pred             ccCCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHH-HHHhC----CeEEEEEeCCeEEEeecCC
Confidence            88875 3455634456777  77774 79999999 998 56677    467888888 899998864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=6e-85  Score=694.98  Aligned_cols=312  Identities=67%  Similarity=1.138  Sum_probs=291.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN  100 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~  100 (726)
                      ||+||||||+|||++|+|+++|||+|+|+|+|+||.|||+|||||+++|||++||++++++++++               
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l---------------   65 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF---------------   65 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH---------------
Confidence            69999999999999999999999999999999999999999999999999999999999555544               


Q ss_pred             hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783         101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH  180 (726)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~  180 (726)
                                                                                            ||+++|++++
T Consensus        66 ----------------------------------------------------------------------Np~v~V~~~~   75 (312)
T cd01489          66 ----------------------------------------------------------------------NPNVKIVAYH   75 (312)
T ss_pred             ----------------------------------------------------------------------CCCCeEEEEe
Confidence                                                                                  4555666666


Q ss_pred             cccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecCCCCCCCCCCCc
Q psy9783         181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGC  260 (726)
Q Consensus       181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~~~~~~~p~C  260 (726)
                      .++.+..++.+||+++|+|++|+||.++|.++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|.+++.++++|.|
T Consensus        76 ~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pic  155 (312)
T cd01489          76 ANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC  155 (312)
T ss_pred             ccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcc
Confidence            66666566778999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             cccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCcccccccccc
Q psy9783         261 TIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNI  340 (726)
Q Consensus       261 ti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~~~~~~~~~  340 (726)
                      ||+++|+.|+|||+||+++|+                                                           
T Consensus       156 tI~~~p~~~~hci~~a~~~f~-----------------------------------------------------------  176 (312)
T cd01489         156 TIRSTPSQPIHCIVWAKSLFF-----------------------------------------------------------  176 (312)
T ss_pred             eecCCCCCCEeehhHHHHHHH-----------------------------------------------------------
Confidence            999999999999999997643                                                           


Q ss_pred             ccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccCCCchhhcCCC
Q psy9783         341 CSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSS  420 (726)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~~  420 (726)
                                                            +|+++|++||++|+++++||+++++|.|+.|+.         
T Consensus       177 --------------------------------------~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~---------  209 (312)
T cd01489         177 --------------------------------------LFNKVFKDDIERLLSMEELWKTRKPPVPLSWKE---------  209 (312)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCC---------
Confidence                                                  366789999999999999999999999998743         


Q ss_pred             cccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHHH
Q psy9783         421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKS  500 (726)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK~  500 (726)
                                                                 ++|||||+.||+||+|+|||||++|+|+..|+|++|+
T Consensus       210 -------------------------------------------~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~  246 (312)
T cd01489         210 -------------------------------------------LTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQ  246 (312)
T ss_pred             -------------------------------------------cCcCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence                                                       2499999999999999999999999999999999999


Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCCCCCCCCCC
Q psy9783         501 MAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVC  567 (726)
Q Consensus       501 IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC  567 (726)
                      |||||||||||||||||||+++|++|++.+..+.+|++|+|+.++++++++.| ..+++|||.|+||
T Consensus       247 i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~c~~c  312 (312)
T cd01489         247 MAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPNRRKRLLVP-CKLDPPNPNCYVC  312 (312)
T ss_pred             HhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccCCCCcEecC-CCCCCcCCCCCCC
Confidence            99999999999999999999999999999999999999999998988899999 7899999999999

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=8.3e-66  Score=529.34  Aligned_cols=233  Identities=48%  Similarity=0.833  Sum_probs=213.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN  100 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~  100 (726)
                      ||+|||+||+|||++|+|+++|||+|+|+|+|+||.|||||||||+++|||++|+++|+++++++||+            
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~------------   68 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPN------------   68 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCC------------
Confidence            69999999999999999999999999999999999999999999999999999999999665555554            


Q ss_pred             hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783         101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH  180 (726)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~  180 (726)
                                                                                               ++|+++.
T Consensus        69 -------------------------------------------------------------------------v~i~~~~   75 (234)
T cd01484          69 -------------------------------------------------------------------------CKVVPYQ   75 (234)
T ss_pred             -------------------------------------------------------------------------CEEEEEe
Confidence                                                                                     4555555


Q ss_pred             ccccc-ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCcceecCCCCCCCCCCC
Q psy9783         181 TSIIS-ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPG  259 (726)
Q Consensus       181 ~~i~~-~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~~~~~~~p~  259 (726)
                      .++.+ ..++.+|++++|+|++|+||.++|.++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|.+.+.++++|.
T Consensus        76 ~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~  155 (234)
T cd01484          76 NKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPM  155 (234)
T ss_pred             ccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCc
Confidence            55533 24567899999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             ccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCccccccccc
Q psy9783         260 CTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLN  339 (726)
Q Consensus       260 Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~~~~~~~~  339 (726)
                      |||+++|+.|+|||+||+++|                                                           
T Consensus       156 Cti~~~P~~~~hci~~a~~~~-----------------------------------------------------------  176 (234)
T cd01484         156 CTIASMPRLPEHCIEWARMLQ-----------------------------------------------------------  176 (234)
T ss_pred             cccCCCCCCchHHHHHHHHHH-----------------------------------------------------------
Confidence            999999999999999997320                                                           


Q ss_pred             cccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccCCCchhhcCC
Q psy9783         340 ICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGS  419 (726)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~  419 (726)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (234)
T cd01484         177 --------------------------------------------------------------------------------  176 (234)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHH
Q psy9783         420 SKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIK  499 (726)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK  499 (726)
                                                                    |  ||+.||+||+++||+||++|+|++.|++++|
T Consensus       177 ----------------------------------------------~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~  208 (234)
T cd01484         177 ----------------------------------------------W--DDPEHIQFIFQASNERASQYNIRGVTYFLTK  208 (234)
T ss_pred             ----------------------------------------------h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence                                                          1  6778999999999999999999999999999


Q ss_pred             HhhcCCCcchhHHHHHHHHHHHHHHH
Q psy9783         500 SMAGNIIPAIATSNAIVAGLVVLHAI  525 (726)
Q Consensus       500 ~IAGnIIPAIATTnAIVAGLvvlEl~  525 (726)
                      +||||||||||||||||||++|+|++
T Consensus       209 ~i~~~iipai~tTnaiia~~~~~e~~  234 (234)
T cd01484         209 GVAGRIIPAVATTNAVVAGVCALEVF  234 (234)
T ss_pred             HHhcCeecchhhHHHHHHHHHHHhhC
Confidence            99999999999999999999999985

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=3.5e-64  Score=530.97  Aligned_cols=281  Identities=39%  Similarity=0.669  Sum_probs=239.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN  100 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~  100 (726)
                      |||||||||+|||+||+|+++|||+|+|+|+|+||.|||||||||+.+|||++||++|+++++++|              
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n--------------   66 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV--------------   66 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC--------------
Confidence            699999999999999999999999999999999999999999999999999999999995555554              


Q ss_pred             hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783         101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH  180 (726)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~  180 (726)
                                                                                             |+++|+++.
T Consensus        67 -----------------------------------------------------------------------p~v~I~~~~   75 (291)
T cd01488          67 -----------------------------------------------------------------------PGVNVTPHF   75 (291)
T ss_pred             -----------------------------------------------------------------------CCCEEEEEe
Confidence                                                                                   555566666


Q ss_pred             cccccccccccccccccEEEEccCcHHHHHHHHHHhhhc--------CCcEEEEccCCccceEEEEeCCCCcceecCCC-
Q psy9783         181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS--------EVPLIESGTAGYEGQVELIKKGETKCYECDPK-  251 (726)
Q Consensus       181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~--------~iPlI~sg~~G~~G~v~~i~p~~t~cy~C~~~-  251 (726)
                      .++.+  ++.+|+++||+|++|+||.++|+++|++|...        ++|+|++|+.|+.|+++++.|+.|+||+|..+ 
T Consensus        76 ~~i~~--~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~  153 (291)
T cd01488          76 GKIQD--KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDL  153 (291)
T ss_pred             cccCc--hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCC
Confidence            66653  35689999999999999999999999998764        49999999999999999999999999999975 


Q ss_pred             -CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCC
Q psy9783         252 -PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLN  330 (726)
Q Consensus       252 -~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~  330 (726)
                       |+++++|.|||+++|+.|+|||+||+.+                                                   
T Consensus       154 ~p~~~~~p~Cti~~~P~~~~hci~~a~~~---------------------------------------------------  182 (291)
T cd01488         154 FPPQVTFPLCTIANTPRLPEHCIEYASLI---------------------------------------------------  182 (291)
T ss_pred             CCCCCCCCcccccCCCCCcchheeeeeee---------------------------------------------------
Confidence             6778999999999999999999999743                                                   


Q ss_pred             ccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccC
Q psy9783         331 PFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWD  410 (726)
Q Consensus       331 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~  410 (726)
                                                          .|.+                              .++       
T Consensus       183 ------------------------------------~~~~------------------------------~~~-------  189 (291)
T cd01488         183 ------------------------------------QWPK------------------------------EFP-------  189 (291)
T ss_pred             ------------------------------------eccc------------------------------ccC-------
Confidence                                                1210                              000       


Q ss_pred             CCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHHHHHHhHHhcCC
Q psy9783         411 TLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSI  490 (726)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~I  490 (726)
                                                                          ...||+||+.||+||+..|+.||.+|+|
T Consensus       190 ----------------------------------------------------~~~~~~d~~~~~~~i~~~a~~ra~~f~i  217 (291)
T cd01488         190 ----------------------------------------------------FVPLDGDDPEHIEWLYQKALERAAQFNI  217 (291)
T ss_pred             ----------------------------------------------------CCcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence                                                                0139999999999999999999999999


Q ss_pred             CCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCCCCCCCCCCC
Q psy9783         491 PEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCS  568 (726)
Q Consensus       491 p~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~  568 (726)
                      +..+++.+++|+||||||||||||||||+++.|++|++.+..... +.|+..  ++..+ +..+....+++|.|.||+
T Consensus       218 ~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~-~n~~~~--~g~~g-~~~~~~~~~~~~~c~~c~  291 (291)
T cd01488         218 SGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENL-NNYLMY--NGVDG-CYTYTFEHERKEDCPVCS  291 (291)
T ss_pred             CcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCC-CceEEE--ecCCc-eEEEEEEEeeCCCCCCCC
Confidence            999999999999999999999999999999999999999743322 334433  22223 334467789999999995

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2015|consensus

Probab=100.00  E-value=1.6e-62  Score=510.39  Aligned_cols=353  Identities=34%  Similarity=0.604  Sum_probs=295.1

Q ss_pred             CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCC
Q psy9783          10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDA   89 (726)
Q Consensus        10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~   89 (726)
                      +.+..+.|.++||||+||||+|||++|||+++||+.++|||+|+||+|||||||||+++|+|++||++||+         
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~---------  101 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAE---------  101 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHH---------
Confidence            67888999999999999999999999999999999999999999999999999999999999999999994         


Q ss_pred             ceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783          90 NIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN  169 (726)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~  169 (726)
                                                                                                  .+..
T Consensus       102 ----------------------------------------------------------------------------fvn~  105 (422)
T KOG2015|consen  102 ----------------------------------------------------------------------------FVNR  105 (422)
T ss_pred             ----------------------------------------------------------------------------HHHh
Confidence                                                                                        4444


Q ss_pred             hCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhh---cC-------CcEEEEccCCccceEEEEe
Q psy9783         170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLA---SE-------VPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~---~~-------iPlI~sg~~G~~G~v~~i~  239 (726)
                      ..|...|..|..+|+  +++.+|+++|++||+++|+.++|+++|.|...   .+       ||+|++|+.|++|++.++.
T Consensus       106 Rvp~~~v~~h~~kIq--d~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~  183 (422)
T KOG2015|consen  106 RVPGCVVVPHRQKIQ--DKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIY  183 (422)
T ss_pred             hCCCcEEeeeecchh--cCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEe
Confidence            556667777777776  46789999999999999999999999998765   22       7999999999999999999


Q ss_pred             CCCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchH
Q psy9783         240 KGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPK  317 (726)
Q Consensus       240 p~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (726)
                      |+.|.|++|..+  |++.+||+|||.|+|..|+|||.|.+-+                                      
T Consensus       184 Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~li--------------------------------------  225 (422)
T KOG2015|consen  184 PGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLI--------------------------------------  225 (422)
T ss_pred             cCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhh--------------------------------------
Confidence            999999999954  6778899999999999999999997621                                      


Q ss_pred             HHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCcc
Q psy9783         318 LIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDL  397 (726)
Q Consensus       318 ~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~  397 (726)
                                                                       +|++.                          
T Consensus       226 -------------------------------------------------qwpe~--------------------------  230 (422)
T KOG2015|consen  226 -------------------------------------------------QWPEL--------------------------  230 (422)
T ss_pred             -------------------------------------------------cchhh--------------------------
Confidence                                                             23210                          


Q ss_pred             cCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHH
Q psy9783         398 WKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFV  477 (726)
Q Consensus       398 w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFV  477 (726)
                          ++                                                          ....+|-||+.||+||
T Consensus       231 ----~~----------------------------------------------------------~g~~~~gdd~~hI~wi  248 (422)
T KOG2015|consen  231 ----NP----------------------------------------------------------FGVPLDGDDPEHIEWI  248 (422)
T ss_pred             ----Cc----------------------------------------------------------cCCCCCCCCHHHHHHH
Confidence                00                                                          0112778999999999


Q ss_pred             HHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccC
Q psy9783         478 AACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYL  557 (726)
Q Consensus       478 tAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~  557 (726)
                      .--+|.||..|+|+..+++.+.++..+||||+|||||+||+.++.|++|++..- ..+-+.|++..  .- ..+..+...
T Consensus       249 ~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~-~~~~~Nym~~n--~~-eG~ytytf~  324 (422)
T KOG2015|consen  249 VERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTAT-DDPLDNYMNYN--AE-EGIYTYTFL  324 (422)
T ss_pred             HHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhc-chhhhhheeee--cc-cceeEEEee
Confidence            999999999999999999999999999999999999999999999999999862 23335566652  11 223444677


Q ss_pred             CCCCCCCCCCCCCCeEEEEEECCCCcHHHHHHHHHhcccCCccceeEEEecCCeEEEec---cccccccccCCchhhh
Q psy9783         558 TAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISS---EEGETEANNDKPLEHG  632 (726)
Q Consensus       558 ~ePnp~C~vC~~~~~~tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~~~~G~ll~ss---~e~e~~~nl~k~L~el  632 (726)
                      .+..++|.||+..++ .+.+. ...||+++++++ .+.|+|.. |.++....-.+|.++   .|..+..||.++|.|+
T Consensus       325 ~er~~nC~vCS~~~~-~~~is-pt~tl~~vl~~l-s~~~~lk~-p~~tt~~~~~ly~~~~~~~e~~t~~nl~~~l~~l  398 (422)
T KOG2015|consen  325 LERDKNCPVCSNLVQ-NYDIS-PTVTLEDVLNHL-SKSFQLKS-PALTTAAGRTLYLSSVPSIEEATRKNLSQSLKEL  398 (422)
T ss_pred             eccCCCCccccCCCc-ccccC-CcccHHHHHHHh-hhhhccCC-chhhhhhcceEeecCCcHHHHHhhhhhhhhHHHh
Confidence            888999999998653 33444 378999999997 47889988 998765333565553   4567899999999998

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=4.9e-36  Score=302.19  Aligned_cols=178  Identities=30%  Similarity=0.469  Sum_probs=156.1

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.+.|++|++++|+|||+||+||+++++|+++|+++|+|+|.|.|+.+||+|||||+++|+|++|+++++
T Consensus         2 Y~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~   81 (202)
T TIGR02356         2 YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA   81 (202)
T ss_pred             CcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHH
Confidence            6899998  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++++++||++++...                                                                 
T Consensus        82 ~~l~~~np~v~i~~~-----------------------------------------------------------------   96 (202)
T TIGR02356        82 QRLRELNSDIQVTAL-----------------------------------------------------------------   96 (202)
T ss_pred             HHHHHhCCCCEEEEe-----------------------------------------------------------------
Confidence            888877777665542                                                                 


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                          ...+.+. .-.++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus        97 --------------------~~~i~~~-~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~  155 (202)
T TIGR02356        97 --------------------KERVTAE-NLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFD  155 (202)
T ss_pred             --------------------hhcCCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEe
Confidence                                2222221 1135788999999999999999999999999999999999999999999999


Q ss_pred             CC-CCcceecCCCCCCCCCCCccccCC
Q psy9783         240 KG-ETKCYECDPKPAAKTYPGCTIRNT  265 (726)
Q Consensus       240 p~-~t~cy~C~~~~~~~~~p~Cti~~~  265 (726)
                      |+ .++||+|.....+...+.|+....
T Consensus       156 p~~~~~c~~c~~~~~~~~~~~~~~~~~  182 (202)
T TIGR02356       156 PGGEGPCLRCLFPDIADTGPSCATAGV  182 (202)
T ss_pred             CCCCCCChhhcCCCCcccCCCCccCCc
Confidence            88 799999997654555677865543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=2.4e-35  Score=310.72  Aligned_cols=178  Identities=21%  Similarity=0.284  Sum_probs=154.7

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      ++||+.+||.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.||||||++|+.+|||++|+++++++
T Consensus        10 ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~   89 (287)
T PRK08223         10 FCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEM   89 (287)
T ss_pred             HhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      ++++||+++|.                                                                     
T Consensus        90 l~~iNP~v~V~---------------------------------------------------------------------  100 (287)
T PRK08223         90 VRDINPELEIR---------------------------------------------------------------------  100 (287)
T ss_pred             HHHHCCCCEEE---------------------------------------------------------------------
Confidence            77666665544                                                                     


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcH--HHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR--AARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~--~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                      ++...++++ ...++++++|+||+|+||+  ++|.++|+.|+.+++|+|.+++.|+.|++.++.
T Consensus       101 ----------------~~~~~l~~~-n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~  163 (287)
T PRK08223        101 ----------------AFPEGIGKE-NADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFD  163 (287)
T ss_pred             ----------------EEecccCcc-CHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEc
Confidence                            444444432 2347889999999999996  899999999999999999999999999999999


Q ss_pred             CCCCcceecCCCC----CC---------CCCCCccccCCC
Q psy9783         240 KGETKCYECDPKP----AA---------KTYPGCTIRNTP  266 (726)
Q Consensus       240 p~~t~cy~C~~~~----~~---------~~~p~Cti~~~p  266 (726)
                      |+ ++||+|.+..    ++         ...|.|.-....
T Consensus       164 p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl  202 (287)
T PRK08223        164 PG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL  202 (287)
T ss_pred             CC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence            86 7999998532    22         466788766665

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=8.1e-35  Score=297.96  Aligned_cols=176  Identities=30%  Similarity=0.509  Sum_probs=152.4

Q ss_pred             CCcccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHH
Q psy9783           1 MATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA   78 (726)
Q Consensus         1 ~~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va   78 (726)
                      .+.||+++  ||.+.|++|++++|+||||||+||+++++|+++||++|+|+|.|.|+.+||+|||||+++|+|++|++++
T Consensus         1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~   80 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA   80 (228)
T ss_pred             CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence            36899999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcc
Q psy9783          79 RNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKS  158 (726)
Q Consensus        79 ~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~s  158 (726)
                      +++++++||++++...                                                                
T Consensus        81 ~~~l~~~np~~~i~~~----------------------------------------------------------------   96 (228)
T cd00757          81 AERLRAINPDVEIEAY----------------------------------------------------------------   96 (228)
T ss_pred             HHHHHHhCCCCEEEEe----------------------------------------------------------------
Confidence            9888877777665542                                                                


Q ss_pred             hhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEE
Q psy9783         159 KAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI  238 (726)
Q Consensus       159 k~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i  238 (726)
                                           ...++. ....++++++|+||+|+|++++|.+++++|+.+++|+|.+|+.|+.|++.++
T Consensus        97 ---------------------~~~i~~-~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~  154 (228)
T cd00757          97 ---------------------NERLDA-ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVF  154 (228)
T ss_pred             ---------------------cceeCH-HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEE
Confidence                                 222221 1123567889999999999999999999999999999999999999999999


Q ss_pred             eCCCCcceecCCCCCCC-CCCCccc
Q psy9783         239 KKGETKCYECDPKPAAK-TYPGCTI  262 (726)
Q Consensus       239 ~p~~t~cy~C~~~~~~~-~~p~Cti  262 (726)
                      .|+.++||.|....... ..+.|..
T Consensus       155 ~p~~~~c~~c~~~~~~~~~~~~~~~  179 (228)
T cd00757         155 IPGEGPCYRCLFPEPPPPGVPSCAE  179 (228)
T ss_pred             CCCCCCCccccCCCCCCCCCCcccc
Confidence            99999999998653221 1345543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=1.1e-34  Score=300.51  Aligned_cols=164  Identities=31%  Similarity=0.548  Sum_probs=145.7

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||+.+|||++|+++++
T Consensus        13 Y~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~   92 (245)
T PRK05690         13 YNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAR   92 (245)
T ss_pred             HHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHH
Confidence            5688876  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++|+++||++++.                                                                   
T Consensus        93 ~~l~~lnp~v~i~-------------------------------------------------------------------  105 (245)
T PRK05690         93 AALARINPHIAIE-------------------------------------------------------------------  105 (245)
T ss_pred             HHHHHHCCCCEEE-------------------------------------------------------------------
Confidence            7777777666544                                                                   


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                        ++...+++. ...++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus       106 ------------------~~~~~i~~~-~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~  166 (245)
T PRK05690        106 ------------------TINARLDDD-ELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFT  166 (245)
T ss_pred             ------------------EEeccCCHH-HHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEe
Confidence                              333333321 2246789999999999999999999999999999999999999999999999


Q ss_pred             CCC-CcceecCCC
Q psy9783         240 KGE-TKCYECDPK  251 (726)
Q Consensus       240 p~~-t~cy~C~~~  251 (726)
                      |+. ++||+|...
T Consensus       167 ~~~~~~c~~c~~~  179 (245)
T PRK05690        167 YQDDEPCYRCLSR  179 (245)
T ss_pred             cCCCCceeeeccC
Confidence            875 799999864

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=1.5e-34  Score=317.83  Aligned_cols=177  Identities=27%  Similarity=0.398  Sum_probs=153.7

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.|||+|||||+..|||++|+++++
T Consensus        19 y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~   98 (390)
T PRK07411         19 YSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAK   98 (390)
T ss_pred             hhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHH
Confidence            6799999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++|+++||+++|.                                                                   
T Consensus        99 ~~l~~~np~v~v~-------------------------------------------------------------------  111 (390)
T PRK07411         99 NRILEINPYCQVD-------------------------------------------------------------------  111 (390)
T ss_pred             HHHHHHCCCCeEE-------------------------------------------------------------------
Confidence            7777766665544                                                                   


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                        ++...++.. ...+++.++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.||+.++.
T Consensus       112 ------------------~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~  172 (390)
T PRK07411        112 ------------------LYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFN  172 (390)
T ss_pred             ------------------EEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEEC
Confidence                              444444332 2346789999999999999999999999999999999999999999999998


Q ss_pred             CCCCcceecCCCC--CCCCCCCccccC
Q psy9783         240 KGETKCYECDPKP--AAKTYPGCTIRN  264 (726)
Q Consensus       240 p~~t~cy~C~~~~--~~~~~p~Cti~~  264 (726)
                      ++.++||+|....  .....|.|....
T Consensus       173 ~~~~~c~~c~~~~~~~~~~~~~c~~~g  199 (390)
T PRK07411        173 YEGGPNYRDLYPEPPPPGMVPSCAEGG  199 (390)
T ss_pred             CCCCCChHHhcCCCCCcccCCCCccCC
Confidence            8889999999642  233456776443

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=1.5e-34  Score=305.31  Aligned_cols=185  Identities=20%  Similarity=0.344  Sum_probs=163.4

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783           1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN   80 (726)
Q Consensus         1 ~~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~   80 (726)
                      ++.||+++||.+.|++|++++|||||+||+|||+||||+++||++|+|+|.|.++.+||+|||||+++|||++|++++++
T Consensus         1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~   80 (286)
T cd01491           1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA   80 (286)
T ss_pred             CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783          81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA  160 (726)
Q Consensus        81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~  160 (726)
                      +|+++||+++|..                                                                   
T Consensus        81 ~L~eLNp~V~V~~-------------------------------------------------------------------   93 (286)
T cd01491          81 RLAELNPYVPVTV-------------------------------------------------------------------   93 (286)
T ss_pred             HHHHHCCCCEEEE-------------------------------------------------------------------
Confidence            7777777665543                                                                   


Q ss_pred             hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783         161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK  240 (726)
Q Consensus       161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p  240 (726)
                                        ++..+     +.+++.+||+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++...  
T Consensus        94 ------------------~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~d--  148 (286)
T cd01491          94 ------------------STGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCD--  148 (286)
T ss_pred             ------------------EeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEec--
Confidence                              33222     23678899999999999999999999999999999999999999999873  


Q ss_pred             CCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhH
Q psy9783         241 GETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKH  278 (726)
Q Consensus       241 ~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~  278 (726)
                       ..+||.|...  ..+.+++.|+|.+.+...+||+.-.++
T Consensus       149 -fg~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h  187 (286)
T cd01491         149 -FGDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRH  187 (286)
T ss_pred             -CCCeEEEeCCCCCcCCccceeeeecCCceEEEEECCccc
Confidence             3478888632  356889999999999999999976554

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=3.3e-34  Score=311.57  Aligned_cols=178  Identities=24%  Similarity=0.390  Sum_probs=155.1

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||++.|+|++|+++++
T Consensus         9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~   88 (355)
T PRK05597          9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR   88 (355)
T ss_pred             hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHH
Confidence            5799999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++|+++||+++|..                                                                  
T Consensus        89 ~~l~~~np~v~v~~------------------------------------------------------------------  102 (355)
T PRK05597         89 EAMLALNPDVKVTV------------------------------------------------------------------  102 (355)
T ss_pred             HHHHHHCCCcEEEE------------------------------------------------------------------
Confidence            77777776665543                                                                  


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                         +...++.+ ...++++++|+||+|+||+.+|..+|++|+++++|+|.+++.|+.|++.++.
T Consensus       103 -------------------~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~  162 (355)
T PRK05597        103 -------------------SVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFH  162 (355)
T ss_pred             -------------------EEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEc
Confidence                               33333321 2246789999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceecCCCC--CCCCCCCccccCC
Q psy9783         240 KGETKCYECDPKP--AAKTYPGCTIRNT  265 (726)
Q Consensus       240 p~~t~cy~C~~~~--~~~~~p~Cti~~~  265 (726)
                      |+.++||+|....  .....+.|+....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~c~~~gv  190 (355)
T PRK05597        163 AGHGPIYEDLFPTPPPPGSVPSCSQAGV  190 (355)
T ss_pred             CCCCCCHHHhCCCCCCccCCCCccccCc
Confidence            9889999998542  3346678865444

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=6.1e-34  Score=292.68  Aligned_cols=164  Identities=28%  Similarity=0.372  Sum_probs=146.4

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccCh-hHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK-SKAQVARN   80 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk-~Ka~va~~   80 (726)
                      +.||+++||.+.|++|++++|+||||||+||+++++|+++||++|+|+|.|.|+.|||+||++|+++|+|+ +|++++++
T Consensus        10 y~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~   89 (231)
T PRK08328         10 YDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKW   89 (231)
T ss_pred             HhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999 59999997


Q ss_pred             HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783          81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA  160 (726)
Q Consensus        81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~  160 (726)
                      ++.++||+++|..                                                                   
T Consensus        90 ~l~~~np~v~v~~-------------------------------------------------------------------  102 (231)
T PRK08328         90 KLERFNSDIKIET-------------------------------------------------------------------  102 (231)
T ss_pred             HHHHhCCCCEEEE-------------------------------------------------------------------
Confidence            7777776665443                                                                   


Q ss_pred             hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783         161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK  240 (726)
Q Consensus       161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p  240 (726)
                                        +...+.++. ...+++++|+|++|+||+++|..++++|+++++|+|.+++.|+.|++.++.|
T Consensus       103 ------------------~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p  163 (231)
T PRK08328        103 ------------------FVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVP  163 (231)
T ss_pred             ------------------EeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECC
Confidence                              333332211 2357889999999999999999999999999999999999999999999999


Q ss_pred             CCCcceecCCC
Q psy9783         241 GETKCYECDPK  251 (726)
Q Consensus       241 ~~t~cy~C~~~  251 (726)
                      +.|+||+|...
T Consensus       164 ~~~~c~~~~~~  174 (231)
T PRK08328        164 GKTKRLREIFP  174 (231)
T ss_pred             CCCCCHHHhCC
Confidence            99999999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=3.2e-33  Score=289.06  Aligned_cols=164  Identities=29%  Similarity=0.541  Sum_probs=143.8

Q ss_pred             Cccccccc--CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGVF--EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~~--g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++|  |.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||++.|||++|+++++
T Consensus         5 y~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~   84 (240)
T TIGR02355         5 YNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAK   84 (240)
T ss_pred             eeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHH
Confidence            67999996  5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++++++||+++|..                                                                  
T Consensus        85 ~~l~~inp~v~i~~------------------------------------------------------------------   98 (240)
T TIGR02355        85 DALTQINPHIAINP------------------------------------------------------------------   98 (240)
T ss_pred             HHHHHHCCCcEEEE------------------------------------------------------------------
Confidence            88777777766554                                                                  


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                         +...+++ ....++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus        99 -------------------~~~~i~~-~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~  158 (240)
T TIGR02355        99 -------------------INAKLDD-AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFT  158 (240)
T ss_pred             -------------------EeccCCH-HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEe
Confidence                               3223322 11236788999999999999999999999999999999999999999998765


Q ss_pred             -CCCCcceecCCC
Q psy9783         240 -KGETKCYECDPK  251 (726)
Q Consensus       240 -p~~t~cy~C~~~  251 (726)
                       +..++||+|...
T Consensus       159 ~~~~~~c~~C~~~  171 (240)
T TIGR02355       159 YQDGEPCYRCLSR  171 (240)
T ss_pred             cCCCCCccccccc
Confidence             446799999843

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=3.3e-33  Score=307.37  Aligned_cols=175  Identities=30%  Similarity=0.450  Sum_probs=150.4

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+.+  ||.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.|||+|||||++.|||++|+++++
T Consensus        23 y~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~  102 (392)
T PRK07878         23 YSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSAR  102 (392)
T ss_pred             hhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHH
Confidence            5789888  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++|+++||+++|.                                                                   
T Consensus       103 ~~l~~~np~v~i~-------------------------------------------------------------------  115 (392)
T PRK07878        103 DSIVEINPLVNVR-------------------------------------------------------------------  115 (392)
T ss_pred             HHHHHhCCCcEEE-------------------------------------------------------------------
Confidence            7777666665544                                                                   


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                        ++..+++.. ...++++++|+||+|+||+.+|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus       116 ------------------~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~  176 (392)
T PRK07878        116 ------------------LHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFW  176 (392)
T ss_pred             ------------------EEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEe
Confidence                              344344321 2346789999999999999999999999999999999999999999999887


Q ss_pred             C----CCCcceecCCCC--CCCCCCCccc
Q psy9783         240 K----GETKCYECDPKP--AAKTYPGCTI  262 (726)
Q Consensus       240 p----~~t~cy~C~~~~--~~~~~p~Cti  262 (726)
                      +    +.++||+|....  .....+.|.-
T Consensus       177 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~  205 (392)
T PRK07878        177 EDAPDGLGLNYRDLYPEPPPPGMVPSCAE  205 (392)
T ss_pred             cCCCCCCCCeeeeecCCCCCccCCCCCcc
Confidence            4    368999998542  2234566653

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=4.1e-33  Score=280.25  Aligned_cols=149  Identities=25%  Similarity=0.440  Sum_probs=134.9

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+++||.+.|++|++++|+|||+||+|||++|+|+++||++|+|+|.|.|+.+||+|||||+.+|+|++|+++++++
T Consensus         4 Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~   83 (197)
T cd01492           4 YDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLER   83 (197)
T ss_pred             hhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |+++||++++..                                                                    
T Consensus        84 L~~lNp~v~i~~--------------------------------------------------------------------   95 (197)
T cd01492          84 LRALNPRVKVSV--------------------------------------------------------------------   95 (197)
T ss_pred             HHHHCCCCEEEE--------------------------------------------------------------------
Confidence            777777765553                                                                    


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL  237 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~  237 (726)
                                       +...+.  ....++++++|+||+|.|+.++|.++|++|+++++|+|.+++.|+.|++..
T Consensus        96 -----------------~~~~~~--~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~  152 (197)
T cd01492          96 -----------------DTDDIS--EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFA  152 (197)
T ss_pred             -----------------EecCcc--ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEE
Confidence                             333332  123578899999999999999999999999999999999999999999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=7.4e-33  Score=302.47  Aligned_cols=176  Identities=24%  Similarity=0.455  Sum_probs=151.8

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||+++|||++|+++++
T Consensus        22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~  101 (370)
T PRK05600         22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA  101 (370)
T ss_pred             hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHH
Confidence            6799999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++++++||++++..                                                                  
T Consensus       102 ~~l~~~np~v~i~~------------------------------------------------------------------  115 (370)
T PRK05600        102 ERLKEIQPDIRVNA------------------------------------------------------------------  115 (370)
T ss_pred             HHHHHHCCCCeeEE------------------------------------------------------------------
Confidence            77777777665543                                                                  


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                         +...++. ....++++++|+||+|+||+++|..+|++|+.+++|+|.+++.|+.||+.++.
T Consensus       116 -------------------~~~~i~~-~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~  175 (370)
T PRK05600        116 -------------------LRERLTA-ENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFN  175 (370)
T ss_pred             -------------------eeeecCH-HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEe
Confidence                               3333332 12246789999999999999999999999999999999999999999999988


Q ss_pred             CCC---CcceecCCCC--CCCCCCCcccc
Q psy9783         240 KGE---TKCYECDPKP--AAKTYPGCTIR  263 (726)
Q Consensus       240 p~~---t~cy~C~~~~--~~~~~p~Cti~  263 (726)
                      |+.   ++||+|.+..  .....+.|...
T Consensus       176 ~~~~~~~~~~~~l~~~~~~~~~~~~c~~~  204 (370)
T PRK05600        176 SGPDHRGVGLRDLFPEQPSGDSIPDCATA  204 (370)
T ss_pred             cCCCCCCCCcHhhCCCCCccccCCCCccC
Confidence            753   6899998642  23345677433

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=2e-32  Score=275.45  Aligned_cols=152  Identities=26%  Similarity=0.459  Sum_probs=135.7

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCC--CccChhHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK--QHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~--~dvGk~Ka~va~   79 (726)
                      +.||+++||.+.|++|++++|+|||+||+|||++|+|+++||++|+|+|.|.|+.+||+|||||++  .|+|++|+++++
T Consensus         2 y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~   81 (198)
T cd01485           2 YDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASY   81 (198)
T ss_pred             ccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999998  889999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++|+++||++++....                                                                
T Consensus        82 ~~L~~lNp~v~i~~~~----------------------------------------------------------------   97 (198)
T cd01485          82 EFLQELNPNVKLSIVE----------------------------------------------------------------   97 (198)
T ss_pred             HHHHHHCCCCEEEEEe----------------------------------------------------------------
Confidence            8888888777665432                                                                


Q ss_pred             hhhHHHHHHhhCCCCeEEEEeccccc-ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEE
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIIS-ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI  238 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~-~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i  238 (726)
                                           ..+.+ .....++++++|+||+|.|+..+|.++|++|+++++|+|.+++.|+.|++.+.
T Consensus        98 ---------------------~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~  156 (198)
T cd01485          98 ---------------------EDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFD  156 (198)
T ss_pred             ---------------------cccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEc
Confidence                                 22210 12235788999999999999999999999999999999999999999998743

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=295.27  Aligned_cols=175  Identities=26%  Similarity=0.359  Sum_probs=150.0

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccC--hhHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVG--KSKAQV   77 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvG--k~Ka~v   77 (726)
                      +.||+++  ||.++|++|++++|+|||+||+||++|++|+++|||+|+|+|.|.||.|||+||+||+++|+|  ++|+++
T Consensus         5 Y~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~a   84 (338)
T PRK12475          5 YSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIA   84 (338)
T ss_pred             hhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHH
Confidence            6788887  899999999999999999999999999999999999999999999999999999999999985  899999


Q ss_pred             HHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCc
Q psy9783          78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGK  157 (726)
Q Consensus        78 a~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~  157 (726)
                      ++++++++||++++..                                                                
T Consensus        85 a~~~l~~inp~v~i~~----------------------------------------------------------------  100 (338)
T PRK12475         85 AKEHLRKINSEVEIVP----------------------------------------------------------------  100 (338)
T ss_pred             HHHHHHHHCCCcEEEE----------------------------------------------------------------
Confidence            9977777777665543                                                                


Q ss_pred             chhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783         158 SKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL  237 (726)
Q Consensus       158 sk~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~  237 (726)
                                           +...++.. .-.++++++|+||+|+||+++|..+|++|+.+++|+|.+++.|+.|++.+
T Consensus       101 ---------------------~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~  158 (338)
T PRK12475        101 ---------------------VVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYT  158 (338)
T ss_pred             ---------------------EeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEE
Confidence                                 33333211 12356788999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcceecCCCCCCCCCCCccc
Q psy9783         238 IKKGETKCYECDPKPAAKTYPGCTI  262 (726)
Q Consensus       238 i~p~~t~cy~C~~~~~~~~~p~Cti  262 (726)
                      +.|+.|+||+|.....+..-+.|..
T Consensus       159 ~~P~~tpC~~Cl~~~~p~~~~~c~~  183 (338)
T PRK12475        159 IIPGKTPCLRCLMEHVPVGGATCDT  183 (338)
T ss_pred             ECCCCCCCHHHhcCCCCCCCCCCcc
Confidence            9999999999996533222345643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=99.98  E-value=4.3e-32  Score=293.39  Aligned_cols=174  Identities=24%  Similarity=0.324  Sum_probs=149.6

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccC--hhHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVG--KSKAQV   77 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvG--k~Ka~v   77 (726)
                      +.||+++  ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|.||.|||+||+||+++|+|  ++|+++
T Consensus         5 Y~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~a   84 (339)
T PRK07688          5 YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVA   84 (339)
T ss_pred             hhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHH
Confidence            6788877  999999999999999999999999999999999999999999999999999999999999995  599999


Q ss_pred             HHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCc
Q psy9783          78 ARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGK  157 (726)
Q Consensus        78 a~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~  157 (726)
                      ++++++++||++++..                                                                
T Consensus        85 a~~~l~~inp~v~v~~----------------------------------------------------------------  100 (339)
T PRK07688         85 AKKRLEEINSDVRVEA----------------------------------------------------------------  100 (339)
T ss_pred             HHHHHHHHCCCcEEEE----------------------------------------------------------------
Confidence            9977777776665543                                                                


Q ss_pred             chhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783         158 SKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL  237 (726)
Q Consensus       158 sk~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~  237 (726)
                                           +...++.. ...++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.+
T Consensus       101 ---------------------~~~~~~~~-~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~  158 (339)
T PRK07688        101 ---------------------IVQDVTAE-ELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYT  158 (339)
T ss_pred             ---------------------EeccCCHH-HHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEE
Confidence                                 33333221 12356789999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcceecCCCCCCCCCCCcc
Q psy9783         238 IKKGETKCYECDPKPAAKTYPGCT  261 (726)
Q Consensus       238 i~p~~t~cy~C~~~~~~~~~p~Ct  261 (726)
                      +.|+.++||+|.....+...+.|.
T Consensus       159 ~~p~~~pC~~Cl~~~~~~~~~~c~  182 (339)
T PRK07688        159 IIPGKTPCLRCLLQSIPLGGATCD  182 (339)
T ss_pred             ECCCCCCCeEeecCCCCCCCCCCc
Confidence            999999999998653333335563

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.97  E-value=3.9e-31  Score=289.33  Aligned_cols=178  Identities=26%  Similarity=0.447  Sum_probs=151.8

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      ++|++++  ||.+.|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||++.|||++|+++++
T Consensus       116 y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~  195 (376)
T PRK08762        116 YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA  195 (376)
T ss_pred             HHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHH
Confidence            4678888  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++++++||++++..                                                                  
T Consensus       196 ~~l~~~np~v~v~~------------------------------------------------------------------  209 (376)
T PRK08762        196 QRLAALNPDVQVEA------------------------------------------------------------------  209 (376)
T ss_pred             HHHHHHCCCCEEEE------------------------------------------------------------------
Confidence            87777777665543                                                                  


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                         +...+.+. ...++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.|++.++.
T Consensus       210 -------------------~~~~~~~~-~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~  269 (376)
T PRK08762        210 -------------------VQERVTSD-NVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFD  269 (376)
T ss_pred             -------------------EeccCChH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEe
Confidence                               22222221 1135678899999999999999999999999999999999999999999999


Q ss_pred             CCC----CcceecCCCC--CCCCCCCccccCC
Q psy9783         240 KGE----TKCYECDPKP--AAKTYPGCTIRNT  265 (726)
Q Consensus       240 p~~----t~cy~C~~~~--~~~~~p~Cti~~~  265 (726)
                      |+.    ++||+|....  .....|.|.....
T Consensus       270 p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv  301 (376)
T PRK08762        270 AGRQRGQAPCYRCLFPEPPPPELAPSCAEAGV  301 (376)
T ss_pred             CCCCCCCCCCHhhcCCCCCCcccCCCCccCCc
Confidence            876    8999998532  2234567765443

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=99.97  E-value=5.6e-31  Score=273.20  Aligned_cols=165  Identities=37%  Similarity=0.605  Sum_probs=146.7

Q ss_pred             Cccccccc--CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGVF--EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~~--g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+.++  |.++|++|+.++|+|||+||+||+++++|+++|+|+++|+|.|+|+.|||+||++|+..|+|++|+++++
T Consensus        11 y~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~   90 (254)
T COG0476          11 YSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAA   90 (254)
T ss_pred             hcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHH
Confidence            57888884  4555999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      +++.++||+                                                                       
T Consensus        91 ~~l~~ln~~-----------------------------------------------------------------------   99 (254)
T COG0476          91 KALRKLNPL-----------------------------------------------------------------------   99 (254)
T ss_pred             HHHHHhCCC-----------------------------------------------------------------------
Confidence            555555554                                                                       


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                    +.+++++..+..... ..++.++|+|++|+||+.+|..+|+.|+.+++|++++++.|+.|++.++.
T Consensus       100 --------------v~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~  164 (254)
T COG0476         100 --------------VEVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVII  164 (254)
T ss_pred             --------------CeEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEe
Confidence                          455555555554444 68899999999999999999999999999999999999999999999999


Q ss_pred             CC-CCcceecCCCC
Q psy9783         240 KG-ETKCYECDPKP  252 (726)
Q Consensus       240 p~-~t~cy~C~~~~  252 (726)
                      |+ .++||+|....
T Consensus       165 ~~~~~~c~~~~~~~  178 (254)
T COG0476         165 PGDKTPCYRCLFPE  178 (254)
T ss_pred             cCCCCCcccccCCC
Confidence            99 59999999653

>PRK14851 hypothetical protein; Provisional

Probab=99.97  E-value=3.2e-30  Score=299.45  Aligned_cols=163  Identities=23%  Similarity=0.371  Sum_probs=145.3

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.|++++||.+.|++|++++|+|||+||+||+++++|+++|||+|+|+|.|+||+||||||++|+..|||++|+++++++
T Consensus        26 y~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~  105 (679)
T PRK14851         26 FSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQ  105 (679)
T ss_pred             hhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      ++++||.++|                                                                      
T Consensus       106 l~~inP~~~I----------------------------------------------------------------------  115 (679)
T PRK14851        106 ALSINPFLEI----------------------------------------------------------------------  115 (679)
T ss_pred             HHHhCCCCeE----------------------------------------------------------------------
Confidence            6666665544                                                                      


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCc--HHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDN--RAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn--~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                     ++++..|+.. .-..|++++|+||+|+||  +++|.+++..|+.++||+|.+|+.|+.|++.++.
T Consensus       116 ---------------~~~~~~i~~~-n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~  179 (679)
T PRK14851        116 ---------------TPFPAGINAD-NMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFT  179 (679)
T ss_pred             ---------------EEEecCCChH-HHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEc
Confidence                           4444444432 224788999999999997  5789999999999999999999999999999999


Q ss_pred             CCCCcceecCCC
Q psy9783         240 KGETKCYECDPK  251 (726)
Q Consensus       240 p~~t~cy~C~~~  251 (726)
                      |+ +.||+|.++
T Consensus       180 p~-~~~~~~~~~  190 (679)
T PRK14851        180 PQ-GMGFDDYFN  190 (679)
T ss_pred             CC-CCCHhHhcc
Confidence            97 789988765

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.96  E-value=1e-29  Score=289.24  Aligned_cols=207  Identities=21%  Similarity=0.262  Sum_probs=156.6

Q ss_pred             cccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCcc---ChhHHHHHHHHhh
Q psy9783           7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV---GKSKAQVARNSAL   83 (726)
Q Consensus         7 ~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dv---Gk~Ka~va~~~l~   83 (726)
                      |+++.-..++|+++|||||||||+||++|++|+++|||+|+|||.|+|+.|||+||+||+.+|+   |++||++|+++|+
T Consensus       326 RllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk  405 (664)
T TIGR01381       326 RLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALK  405 (664)
T ss_pred             hcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHH
Confidence            5667777799999999999999999999999999999999999999999999999999999999   9999999999999


Q ss_pred             hcCCCCceeee-eccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhh
Q psy9783          84 NFNPDANIYYQ-VDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQV  162 (726)
Q Consensus        84 ~~np~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~  162 (726)
                      ++||++++... ....++++.+...                                                   ..  
T Consensus       406 ~InP~v~i~~~~~~Ipm~Gh~i~~~---------------------------------------------------~~--  432 (664)
T TIGR01381       406 RIFPSIQATGHRLTVPMPGHPIDEK---------------------------------------------------DV--  432 (664)
T ss_pred             HHCCCcEEEEeeeeeccccccCCch---------------------------------------------------hh--
Confidence            99999988743 2222332221100                                                   00  


Q ss_pred             HHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC--
Q psy9783         163 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK--  240 (726)
Q Consensus       163 ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p--  240 (726)
                        +...               .+...-..+++++|+|++|+||+++|..++.+|..+++|+|+++ .|+.|++.+...  
T Consensus       433 --~~~~---------------~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg~lvmrhG~~  494 (664)
T TIGR01381       433 --PELE---------------KDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDSYVVMRHGIG  494 (664)
T ss_pred             --hhcc---------------ccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccceEEEEEeccc
Confidence              0000               00011246789999999999999999999999999999999986 899999887622  


Q ss_pred             ----------------CCCcceecCCC---CCCCCC----CCccccCCCCCcchhhhhHhHHhHHHHH
Q psy9783         241 ----------------GETKCYECDPK---PAAKTY----PGCTIRNTPSEPIHCIVWAKHLFNYLER  285 (726)
Q Consensus       241 ----------------~~t~cy~C~~~---~~~~~~----p~Cti~~~p~~~~h~i~~a~~lf~~lf~  285 (726)
                                      ...+||.|..-   ......    +.||+...--.++-.. .|-+++..+..
T Consensus       495 ~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtrPgv~~ias~-~AvEll~~llq  561 (664)
T TIGR01381       495 RSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTRPGTAMIASG-LAVELLVSVLQ  561 (664)
T ss_pred             ccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEecchHHHHHHH-HHHHHHHHHhc
Confidence                            14789999932   222222    6899766555444333 34555555554

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK14852 hypothetical protein; Provisional

Probab=99.96  E-value=9.1e-30  Score=300.46  Aligned_cols=163  Identities=23%  Similarity=0.356  Sum_probs=145.0

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+++||.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.||||||++|+..|||++|+++++++
T Consensus       315 y~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~  394 (989)
T PRK14852        315 FSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTER  394 (989)
T ss_pred             hhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      ++++||+++|..                                                                    
T Consensus       395 l~~INP~v~I~~--------------------------------------------------------------------  406 (989)
T PRK14852        395 ALSVNPFLDIRS--------------------------------------------------------------------  406 (989)
T ss_pred             HHHHCCCCeEEE--------------------------------------------------------------------
Confidence            777777666554                                                                    


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcH--HHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNR--AARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~--~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                       +...++. +...+|++++|+||+|+|++  ++|.+++..|++++||+|.+|+.|+.|++.++.
T Consensus       407 -----------------~~~~I~~-en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~  468 (989)
T PRK14852        407 -----------------FPEGVAA-ETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFM  468 (989)
T ss_pred             -----------------EecCCCH-HHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEc
Confidence                             3333322 22357889999999999984  578899999999999999999999999999999


Q ss_pred             CCCCcceecCCC
Q psy9783         240 KGETKCYECDPK  251 (726)
Q Consensus       240 p~~t~cy~C~~~  251 (726)
                      |+. .||+|.++
T Consensus       469 p~~-~~~~~~f~  479 (989)
T PRK14852        469 PGG-MNFDSYFG  479 (989)
T ss_pred             CCC-CCHHHhCC
Confidence            864 99999865

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.96  E-value=5.2e-29  Score=276.11  Aligned_cols=166  Identities=23%  Similarity=0.361  Sum_probs=147.1

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+|+||.++|++|.+++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+||||++.+|+|++||++++++
T Consensus         3 YDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~   82 (425)
T cd01493           3 YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCEL   82 (425)
T ss_pred             chHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |+++||++++.+.....                                                               
T Consensus        83 L~eLNp~V~i~~~~e~~---------------------------------------------------------------   99 (425)
T cd01493          83 LQELNPDVNGSAVEESP---------------------------------------------------------------   99 (425)
T ss_pred             HHHHCCCCEEEEEeccc---------------------------------------------------------------
Confidence            99999988776532210                                                               


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG  241 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~  241 (726)
                         +.+.                  ..+.+||.+||+||.+.++...+..++++|+.+++|+|.+++.|+.|++.+..|.
T Consensus       100 ---~~ll------------------~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~  158 (425)
T cd01493         100 ---EALL------------------DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE  158 (425)
T ss_pred             ---chhh------------------hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC
Confidence               0000                  1135789999999999999999999999999999999999999999999999984


Q ss_pred             CCcceecCCCC
Q psy9783         242 ETKCYECDPKP  252 (726)
Q Consensus       242 ~t~cy~C~~~~  252 (726)
                       ..+.++.+++
T Consensus       159 -h~i~et~p~~  168 (425)
T cd01493         159 -HTIVESHPDN  168 (425)
T ss_pred             -eEEEECCCCC
Confidence             4577887664

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.96  E-value=6.9e-29  Score=257.07  Aligned_cols=164  Identities=24%  Similarity=0.324  Sum_probs=133.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC-----C-----eEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGF-----S-----NIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFN   86 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv-----~-----~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~n   86 (726)
                      -+..+|+||||||+||+++++||++|+     |     +|+|+|+|+|+.|||||| +|...|||++|++++++++..++
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence            478899999999999999999999973     4     999999999999999999 57889999999999997665444


Q ss_pred             CCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHH
Q psy9783          87 PDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNS  166 (726)
Q Consensus        87 p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~  166 (726)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (244)
T TIGR03736        88 --------------------------------------------------------------------------------   87 (244)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhh--c-CCcEEEEccC--------Cc----
Q psy9783         167 ALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLA--S-EVPLIESGTA--------GY----  231 (726)
Q Consensus       167 ~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~--~-~iPlI~sg~~--------G~----  231 (726)
                            +++|+++...+..    ..++.++|+||+|+||+++|.++++.|.+  + .+|||++|+.        |.    
T Consensus        88 ------~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~  157 (244)
T TIGR03736        88 ------GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSR  157 (244)
T ss_pred             ------CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccc
Confidence                  2345555555443    13356899999999999999999999988  3 4899999994        44    


Q ss_pred             -cceEEEEeCCCCcceecCCCC---CCCCCCCccccCCCCCcchh
Q psy9783         232 -EGQVELIKKGETKCYECDPKP---AAKTYPGCTIRNTPSEPIHC  272 (726)
Q Consensus       232 -~G~v~~i~p~~t~cy~C~~~~---~~~~~p~Cti~~~p~~~~h~  272 (726)
                       +|+.+++.|+.|+||.|..++   ++.+.|+||+..--. |.++
T Consensus       158 ~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~-~Q~l  201 (244)
T TIGR03736       158 AKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALA-KQSL  201 (244)
T ss_pred             cccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhc-Cchh
Confidence             566677889999999998776   567899999886533 4443

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.96  E-value=1.7e-28  Score=231.37  Aligned_cols=134  Identities=37%  Similarity=0.657  Sum_probs=114.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeecc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDF   97 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~   97 (726)
                      +++||+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+||+.+|+|++|+++++++++++||++++..    
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~----   76 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEA----   76 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEE----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeee----
Confidence            5789999999999999999999999999999999999999999999999999999999999977777777665554    


Q ss_pred             ccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEE
Q psy9783          98 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIV  177 (726)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~  177 (726)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (135)
T PF00899_consen   77 --------------------------------------------------------------------------------   76 (135)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEE
Q psy9783         178 AHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVEL  237 (726)
Q Consensus       178 ~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~  237 (726)
                       +..++.+ .....+++++|+||+|+|+.++|.+++++|+.+++|+|++++.|+.|++..
T Consensus        77 -~~~~~~~-~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   77 -IPEKIDE-ENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             -EESHCSH-HHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred             -eeccccc-ccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence             3333322 123466789999999999999999999999999999999999999999854

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.95  E-value=2.8e-28  Score=251.07  Aligned_cols=141  Identities=26%  Similarity=0.384  Sum_probs=122.2

Q ss_pred             cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCC
Q psy9783           9 FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPD   88 (726)
Q Consensus         9 ~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~   88 (726)
                      ||.+.|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|++||||||+++..+|||++|+++++++++++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             CceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHH
Q psy9783          89 ANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSAL  168 (726)
Q Consensus        89 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~  168 (726)
                      ++|.....+                                                                       
T Consensus        81 ~~V~~~~~~-----------------------------------------------------------------------   89 (231)
T cd00755          81 CEVDAVEEF-----------------------------------------------------------------------   89 (231)
T ss_pred             cEEEEeeee-----------------------------------------------------------------------
Confidence            777654333                                                                       


Q ss_pred             hhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccce
Q psy9783         169 NFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQ  234 (726)
Q Consensus       169 ~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~  234 (726)
                                    ++.+.....+..++|+||+|+|+..++..++++|+.+++|+|.++..|-+..
T Consensus        90 --------------i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~d  141 (231)
T cd00755          90 --------------LTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLD  141 (231)
T ss_pred             --------------cCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCC
Confidence                          2111111222356999999999999999999999999999999987776543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.95  E-value=2.7e-28  Score=258.02  Aligned_cols=193  Identities=23%  Similarity=0.316  Sum_probs=144.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCc--cChhHHHHHHHHhhhcCCCCceeeee-cc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQH--VGKSKAQVARNSALNFNPDANIYYQV-DF   97 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~d--vGk~Ka~va~~~l~~~np~~~v~~~~-~~   97 (726)
                      ||+||||||+||++|++|+++|||+|+|+|.|+|+.|||+||+||+.+|  +|++|+++|+++|+++||++++.... ..
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999987532 22


Q ss_pred             ccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEE
Q psy9783          98 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIV  177 (726)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~  177 (726)
                      .++++.+.                                                   ..      + .    +.  . 
T Consensus        81 pmpgh~~~---------------------------------------------------~~------~-~----~~--~-   95 (307)
T cd01486          81 PMPGHPIS---------------------------------------------------ES------E-V----PS--T-   95 (307)
T ss_pred             cccccccc---------------------------------------------------cc------c-c----cc--c-
Confidence            22222110                                                   00      0 0    00  0 


Q ss_pred             EEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC----------------
Q psy9783         178 AHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG----------------  241 (726)
Q Consensus       178 ~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~----------------  241 (726)
                           ..+...-.++++++|+|++|+||+++|+.++.+|..+++|+|++ ..|+.|++.+-...                
T Consensus        96 -----~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~~~~~~~~~~~  169 (307)
T cd01486          96 -----LKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQSGSGDSSSDSI  169 (307)
T ss_pred             -----ccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccccccccccccc
Confidence                 00111224778999999999999999999999999999999985 68999998775532                


Q ss_pred             ---CCcceecCCCCCC-------CCCCCccccCCCCCcchhhhhHhHHhHHHHH
Q psy9783         242 ---ETKCYECDPKPAA-------KTYPGCTIRNTPSEPIHCIVWAKHLFNYLER  285 (726)
Q Consensus       242 ---~t~cy~C~~~~~~-------~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~  285 (726)
                         ...||.|..--.+       .--..||.+..--.++-. ..|-+|+-.+..
T Consensus       170 ~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias-~~avEl~~s~lq  222 (307)
T cd01486         170 PGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIAS-SIAVELLVSLLQ  222 (307)
T ss_pred             CCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHH-HHHHHHHHHHHc
Confidence               3579999954222       223679988765544422 234444444433

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.95  E-value=6.9e-28  Score=245.07  Aligned_cols=158  Identities=28%  Similarity=0.409  Sum_probs=131.2

Q ss_pred             ccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhh
Q psy9783           4 KIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSAL   83 (726)
Q Consensus         4 ~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~   83 (726)
                      ++.+.||.+.|++|++++|+||||||+||+++++|+++|+++|+|+|.|.|+.+||+||++| .+|+|++|++++++++.
T Consensus        13 ~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~   91 (212)
T PRK08644         13 MLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLL   91 (212)
T ss_pred             HHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHH
Confidence            45677999999999999999999999999999999999999999999999999999999976 78999999999997777


Q ss_pred             hcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhH
Q psy9783          84 NFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVA  163 (726)
Q Consensus        84 ~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~a  163 (726)
                      ++||++++..                                                                      
T Consensus        92 ~lnp~v~v~~----------------------------------------------------------------------  101 (212)
T PRK08644         92 EINPFVEIEA----------------------------------------------------------------------  101 (212)
T ss_pred             HHCCCCEEEE----------------------------------------------------------------------
Confidence            7776665543                                                                      


Q ss_pred             HHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhc-CCcEEEEccCCccceEEEEeCCC
Q psy9783         164 RNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS-EVPLIESGTAGYEGQVELIKKGE  242 (726)
Q Consensus       164 k~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~-~iPlI~sg~~G~~G~v~~i~p~~  242 (726)
                                     +...+++. ...++++++|+||+|+||+++|..+++.|.++ ++|+|.++..|..|++..+.+..
T Consensus       102 ---------------~~~~i~~~-~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~  165 (212)
T PRK08644        102 ---------------HNEKIDED-NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRR  165 (212)
T ss_pred             ---------------EeeecCHH-HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecC
Confidence                           33333321 12367889999999999999999999999999 99999876666667766555533


Q ss_pred             --Ccceec
Q psy9783         243 --TKCYEC  248 (726)
Q Consensus       243 --t~cy~C  248 (726)
                        ..||.|
T Consensus       166 ~~~~~~~~  173 (212)
T PRK08644        166 IGKNFYIV  173 (212)
T ss_pred             CCCCeeEC
Confidence              456654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.95  E-value=1.1e-27  Score=251.18  Aligned_cols=145  Identities=26%  Similarity=0.466  Sum_probs=126.5

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.|+.++||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.||||||+++..++||++|+++++++
T Consensus        13 f~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~r   92 (268)
T PRK15116         13 FGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAER   92 (268)
T ss_pred             HhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      +.++||+++|.....++++                                                             
T Consensus        93 l~~INP~~~V~~i~~~i~~-------------------------------------------------------------  111 (268)
T PRK15116         93 IRQINPECRVTVVDDFITP-------------------------------------------------------------  111 (268)
T ss_pred             HHhHCCCcEEEEEecccCh-------------------------------------------------------------
Confidence            9988888877654333211                                                             


Q ss_pred             hHHHHHHhhCCCCeEEEEeccccccccccccc-ccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCcc
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYE  232 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~-~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~  232 (726)
                                              +.. ..++ .++|+||+|+|++.++..++++|+.+++|+|.+|..|-.
T Consensus       112 ------------------------e~~-~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k  158 (268)
T PRK15116        112 ------------------------DNV-AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQ  158 (268)
T ss_pred             ------------------------hhH-HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence                                    001 1223 479999999999999999999999999999999766543

>KOG2017|consensus

Probab=99.95  E-value=1.8e-28  Score=258.62  Aligned_cols=168  Identities=30%  Similarity=0.516  Sum_probs=147.3

Q ss_pred             ccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCC
Q psy9783           8 VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNP   87 (726)
Q Consensus         8 ~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np   87 (726)
                      =||..+|.+|++++||||||||+||-.+..|+.+|+|+|-|+|.|.||.|||.||.++++..+|+.||+.|+..++.+||
T Consensus        55 e~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs  134 (427)
T KOG2017|consen   55 EFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNS  134 (427)
T ss_pred             ccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             CCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHH
Q psy9783          88 DANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSA  167 (726)
Q Consensus        88 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~  167 (726)
                      +++|..+..++.                                                                    
T Consensus       135 ~v~v~~y~~~L~--------------------------------------------------------------------  146 (427)
T KOG2017|consen  135 HVEVQTYNEFLS--------------------------------------------------------------------  146 (427)
T ss_pred             Cceeeechhhcc--------------------------------------------------------------------
Confidence            877665433321                                                                    


Q ss_pred             HhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCccee
Q psy9783         168 LNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYE  247 (726)
Q Consensus       168 ~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~cy~  247 (726)
                                       + ....+++++||+|++|+||...|..++..|+..++|+|.+...++.||+++......+||+
T Consensus       147 -----------------~-sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYR  208 (427)
T KOG2017|consen  147 -----------------S-SNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYR  208 (427)
T ss_pred             -----------------c-hhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceee
Confidence                             1 1224678999999999999999999999999999999999999999999999998999999


Q ss_pred             cCCC-C-CCCCCCCcc
Q psy9783         248 CDPK-P-AAKTYPGCT  261 (726)
Q Consensus       248 C~~~-~-~~~~~p~Ct  261 (726)
                      |.+. | ++.....|.
T Consensus       209 ClFP~Ppp~~~vt~C~  224 (427)
T KOG2017|consen  209 CLFPNPPPPEAVTNCA  224 (427)
T ss_pred             ecCCCCcChHHhcccc
Confidence            9954 2 223455554

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.95  E-value=2.4e-27  Score=225.19  Aligned_cols=133  Identities=38%  Similarity=0.661  Sum_probs=117.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN  100 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~  100 (726)
                      +|+|||+||+||+++++|+++|+++|+|+|.|.|+++||+||+|++.+|+|++|+++++++++++||++++...      
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~------   74 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAV------   74 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEE------
Confidence            69999999999999999999999999999999999999999999999999999999999887777777665542      


Q ss_pred             hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783         101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH  180 (726)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~  180 (726)
                                                                                                     .
T Consensus        75 -------------------------------------------------------------------------------~   75 (143)
T cd01483          75 -------------------------------------------------------------------------------P   75 (143)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           2


Q ss_pred             cccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                      ..+.+.. ...++.++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus        76 ~~~~~~~-~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          76 EGISEDN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             eecChhh-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence            2222211 146788999999999999999999999999999999999999999998877

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07877 hypothetical protein; Provisional

Probab=99.94  E-value=3.2e-27  Score=275.33  Aligned_cols=170  Identities=16%  Similarity=0.269  Sum_probs=140.7

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN   80 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~   80 (726)
                      ++|+.++||.++|++|++++|+|||+| +||.++.+|+++|| |+|+|+|.|+||.|||||| +|+..|+|++|++++++
T Consensus        90 ~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~  167 (722)
T PRK07877         90 LDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAAR  167 (722)
T ss_pred             hhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHH
Confidence            578999999999999999999999997 99999999999996 9999999999999999998 58999999999999997


Q ss_pred             HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783          81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA  160 (726)
Q Consensus        81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~  160 (726)
                      +|.++||+++|.                                                                    
T Consensus       168 ~l~~inp~i~v~--------------------------------------------------------------------  179 (722)
T PRK07877        168 RIAELDPYLPVE--------------------------------------------------------------------  179 (722)
T ss_pred             HHHHHCCCCEEE--------------------------------------------------------------------
Confidence            666666665544                                                                    


Q ss_pred             hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEE---E
Q psy9783         161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVE---L  237 (726)
Q Consensus       161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~---~  237 (726)
                                       ++...++.+ .-.+|++++|+|++|+||+++|..+|+.|.++++|+|.++..+  |++.   +
T Consensus       180 -----------------~~~~~i~~~-n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~  239 (722)
T PRK07877        180 -----------------VFTDGLTED-NVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERF  239 (722)
T ss_pred             -----------------EEeccCCHH-HHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCccee
Confidence                             444444432 2346788999999999999999999999999999999888555  7763   2


Q ss_pred             -EeCCCCcceecCCCC-CCCCCCCccc
Q psy9783         238 -IKKGETKCYECDPKP-AAKTYPGCTI  262 (726)
Q Consensus       238 -i~p~~t~cy~C~~~~-~~~~~p~Cti  262 (726)
                       +.| .++||.|.... +......|+.
T Consensus       240 ~~~p-~~pc~~cl~~~~~~~~~~~~~~  265 (722)
T PRK07877        240 DLEP-DRPILHGLLGDIDAAKLAGLST  265 (722)
T ss_pred             eeCC-CCceeeccCCCCChhhhccCCh
Confidence             355 68999999643 3334445544

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.94  E-value=5.9e-27  Score=281.52  Aligned_cols=157  Identities=20%  Similarity=0.365  Sum_probs=140.1

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783           1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN   80 (726)
Q Consensus         1 ~~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~   80 (726)
                      ++.||+++||.++|++|++++||||||||+|+|+||||+++|||+|+|+|.|.|+.+||+|||||+++|||++||+++++
T Consensus         6 lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~   85 (1008)
T TIGR01408         6 LYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVK   85 (1008)
T ss_pred             hhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783          81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA  160 (726)
Q Consensus        81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~  160 (726)
                      +|+++||+++|.+.                                                                  
T Consensus        86 ~L~eLNp~V~V~~~------------------------------------------------------------------   99 (1008)
T TIGR01408        86 KLAELNPYVHVSSS------------------------------------------------------------------   99 (1008)
T ss_pred             HHHHHCCCceEEEe------------------------------------------------------------------
Confidence            88888877766542                                                                  


Q ss_pred             hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcC--CcEEEEccCCccceEEEE
Q psy9783         161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASE--VPLIESGTAGYEGQVELI  238 (726)
Q Consensus       161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~--iPlI~sg~~G~~G~v~~i  238 (726)
                                         ...+     +.+++++||+||+|.|+.+.+..+|++|+.++  +|+|.+++.|+.|++..-
T Consensus       100 -------------------~~~l-----~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D  155 (1008)
T TIGR01408       100 -------------------SVPF-----NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCD  155 (1008)
T ss_pred             -------------------cccC-----CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEec
Confidence                               2222     23578999999999999999999999999999  999999999999988753


Q ss_pred             eCCCCcceecCC
Q psy9783         239 KKGETKCYECDP  250 (726)
Q Consensus       239 ~p~~t~cy~C~~  250 (726)
                         ..+||.|..
T Consensus       156 ---~g~~f~~~d  164 (1008)
T TIGR01408       156 ---FGDEFEVLD  164 (1008)
T ss_pred             ---CCCceEEEe
Confidence               346666654

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.94  E-value=5.5e-26  Score=224.49  Aligned_cols=142  Identities=28%  Similarity=0.435  Sum_probs=120.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCceeeeeccccc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLN  100 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~v~~~~~~~~~  100 (726)
                      ||+||||||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||++++.        
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~--------   71 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIE--------   71 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEE--------
Confidence            699999999999999999999999999999999999999999955 68999999999997777777666544        


Q ss_pred             hhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeEEEEe
Q psy9783         101 RQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHH  180 (726)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i~~~~  180 (726)
                                                                                                   ++.
T Consensus        72 -----------------------------------------------------------------------------~~~   74 (174)
T cd01487          72 -----------------------------------------------------------------------------AIN   74 (174)
T ss_pred             -----------------------------------------------------------------------------EEE
Confidence                                                                                         333


Q ss_pred             cccccccccccccccccEEEEccCcHHHHHHHHHHhhhc-CCcEEEEccCCccceEEEEeCCC--CcceecC
Q psy9783         181 TSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS-EVPLIESGTAGYEGQVELIKKGE--TKCYECD  249 (726)
Q Consensus       181 ~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~-~iPlI~sg~~G~~G~v~~i~p~~--t~cy~C~  249 (726)
                      ..+.. ....++++++|+||+|+||+++|..+++.|.++ ++|+|.++..|+.|++..+.++.  .+||+|.
T Consensus        75 ~~~~~-~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (174)
T cd01487          75 IKIDE-NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG  145 (174)
T ss_pred             eecCh-hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence            33332 122467899999999999999999888888777 99999998899999998887654  4799997

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.93  E-value=5e-25  Score=222.40  Aligned_cols=158  Identities=27%  Similarity=0.439  Sum_probs=120.8

Q ss_pred             cccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhh
Q psy9783           5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALN   84 (726)
Q Consensus         5 ~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~   84 (726)
                      +.+.+|++.|++|++++|+||||||+||+++++|+++||++|+|+|.|.||.+||+||+ |..+|+|++|++++++++.+
T Consensus         7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~   85 (200)
T TIGR02354         7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISE   85 (200)
T ss_pred             HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999997 56799999999999977777


Q ss_pred             cCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHH
Q psy9783          85 FNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVAR  164 (726)
Q Consensus        85 ~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak  164 (726)
                      +||.+++.                                                                        
T Consensus        86 inp~~~i~------------------------------------------------------------------------   93 (200)
T TIGR02354        86 INPYTEIE------------------------------------------------------------------------   93 (200)
T ss_pred             HCCCCEEE------------------------------------------------------------------------
Confidence            77665544                                                                        


Q ss_pred             HHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhh-hcCC-cEEE-EccCCccceEEEEe-C
Q psy9783         165 NSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCL-ASEV-PLIE-SGTAGYEGQVELIK-K  240 (726)
Q Consensus       165 ~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~-~~~i-PlI~-sg~~G~~G~v~~i~-p  240 (726)
                                   ++...+++. ...++++++|+||+|+||+++|..++..|. .++. +++. +|+.|+.+...+.. +
T Consensus        94 -------------~~~~~i~~~-~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~~~~~~~~~  159 (200)
T TIGR02354        94 -------------AYDEKITEE-NIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDDANSIKTRK  159 (200)
T ss_pred             -------------EeeeeCCHh-HHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCCCceEEecc
Confidence                         333333322 223578899999999999999988765554 4444 4443 44444443223322 2


Q ss_pred             CCCcceecC
Q psy9783         241 GETKCYECD  249 (726)
Q Consensus       241 ~~t~cy~C~  249 (726)
                      ....||.|.
T Consensus       160 ~~~~~~~~~  168 (200)
T TIGR02354       160 ISKHFYLCG  168 (200)
T ss_pred             cCCCEEEcC
Confidence            345799994

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.92  E-value=1.6e-25  Score=228.40  Aligned_cols=145  Identities=28%  Similarity=0.430  Sum_probs=127.6

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      ++|+.+++|.+..++|++++|+|||+||+|+..++.|+|+|+|+|+|||+|.|+++|+|||.--...+||++|+++++++
T Consensus        13 f~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~er   92 (263)
T COG1179          13 FGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKER   92 (263)
T ss_pred             hhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999998777789999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      ++.|||.++|....+|.+.                                                             
T Consensus        93 i~~InP~c~V~~~~~f~t~-------------------------------------------------------------  111 (263)
T COG1179          93 IKQINPECEVTAINDFITE-------------------------------------------------------------  111 (263)
T ss_pred             HHhhCCCceEeehHhhhCH-------------------------------------------------------------
Confidence            9999999888876555322                                                             


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY  231 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~  231 (726)
                                              +....-+..+||+||+|+|++++...+-.+|+.+++|+|.++..|-
T Consensus       112 ------------------------en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         112 ------------------------ENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             ------------------------hHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence                                    1112233457999999999999999999999999999999885553

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.92  E-value=3.2e-25  Score=238.10  Aligned_cols=147  Identities=18%  Similarity=0.193  Sum_probs=130.8

Q ss_pred             cccccc---cC-HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHH
Q psy9783           3 TKIPGV---FE-KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVA   78 (726)
Q Consensus         3 ~~~~~~---~g-~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va   78 (726)
                      .||+.+   || .++|++|++++|+   |||+|+.++..|+. |||+|+|+|.|.||.|||+  +||+++|||++|+++|
T Consensus        56 ~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a  129 (318)
T TIGR03603        56 IDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDL  129 (318)
T ss_pred             HHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHH
Confidence            456555   56 5589999999999   99999999999999 9999999999999999999  9999999999999999


Q ss_pred             HHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcc
Q psy9783          79 RNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKS  158 (726)
Q Consensus        79 ~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~s  158 (726)
                      ++++..+||++++..                                                                 
T Consensus       130 ~~~L~~lnp~v~i~~-----------------------------------------------------------------  144 (318)
T TIGR03603       130 TSNLDALELTKNVDE-----------------------------------------------------------------  144 (318)
T ss_pred             HHHHHHhCCCCEEee-----------------------------------------------------------------
Confidence            988877777765431                                                                 


Q ss_pred             hhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHH--HHHHhhhcCCcEEEEccCCccceEE
Q psy9783         159 KAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNH--VNRMCLASEVPLIESGTAGYEGQVE  236 (726)
Q Consensus       159 k~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~--in~~c~~~~iPlI~sg~~G~~G~v~  236 (726)
                                          +          ..+++++|+|++|+||+..|..  +|++|+.+++|+|.++..|+.||+.
T Consensus       145 --------------------~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~  194 (318)
T TIGR03603       145 --------------------L----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFIT  194 (318)
T ss_pred             --------------------H----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEE
Confidence                                1          2457889999999999999955  9999999999999999999999999


Q ss_pred             EEeCCCCcceecCC
Q psy9783         237 LIKKGETKCYECDP  250 (726)
Q Consensus       237 ~i~p~~t~cy~C~~  250 (726)
                      .+.|+.|+||+|..
T Consensus       195 ~~~P~~t~C~~Cl~  208 (318)
T TIGR03603       195 CTLPPETGCFECLE  208 (318)
T ss_pred             EEeCCCCCcHHHcc
Confidence            88898899999964

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>PRK06153 hypothetical protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=228.23  Aligned_cols=147  Identities=20%  Similarity=0.262  Sum_probs=120.3

Q ss_pred             CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCC-CCCCCccCh--hHHHHHHHHhhhcC
Q psy9783          10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQF-LFHKQHVGK--SKAQVARNSALNFN   86 (726)
Q Consensus        10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQf-Lf~~~dvGk--~Ka~va~~~l~~~n   86 (726)
                      +...|++|++++|+||||||+||.++..|+++||++|+|+|.|+|+.|||+||+ +|+.+|+|+  +|++++++++.+++
T Consensus       167 i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in  246 (393)
T PRK06153        167 IGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR  246 (393)
T ss_pred             hHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC
Confidence            446799999999999999999999999999999999999999999999999998 678999999  99999998777766


Q ss_pred             CCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHH
Q psy9783          87 PDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNS  166 (726)
Q Consensus        87 p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~  166 (726)
                      |.+                                                                             
T Consensus       247 ~~I-----------------------------------------------------------------------------  249 (393)
T PRK06153        247 RGI-----------------------------------------------------------------------------  249 (393)
T ss_pred             CeE-----------------------------------------------------------------------------
Confidence            532                                                                             


Q ss_pred             HHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC-CCcc
Q psy9783         167 ALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG-ETKC  245 (726)
Q Consensus       167 ~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~-~t~c  245 (726)
                                +++...+...  +...+.++|+||+|+|+.++|..++++|..+++|+|++|+.     +.+. .+ ...|
T Consensus       250 ----------~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~-~g~l~G~  311 (393)
T PRK06153        250 ----------VPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELS-NGSLGGI  311 (393)
T ss_pred             ----------EEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceec-CCCcCcE
Confidence                      2222333211  22357899999999999999999999999999999999843     1111 22 2568


Q ss_pred             eecCCC
Q psy9783         246 YECDPK  251 (726)
Q Consensus       246 y~C~~~  251 (726)
                      .+|...
T Consensus       312 ~Rvt~~  317 (393)
T PRK06153        312 LRVTLS  317 (393)
T ss_pred             EEEEEe
Confidence            888754

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.88  E-value=3.9e-23  Score=174.60  Aligned_cols=66  Identities=52%  Similarity=0.747  Sum_probs=56.3

Q ss_pred             cccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh
Q psy9783         465 VWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQA  530 (726)
Q Consensus       465 ~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~  530 (726)
                      +||+||+.|++||+|+|||||++||||+.|++++++++|+||||++||||||||++|+|++|++++
T Consensus         1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~   66 (67)
T PF02134_consen    1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN   66 (67)
T ss_dssp             ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence            499999999999999999999999999999999999999999999999999999999999999986

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>KOG2336|consensus

Probab=99.87  E-value=4.7e-22  Score=205.23  Aligned_cols=166  Identities=29%  Similarity=0.469  Sum_probs=133.5

Q ss_pred             HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCc
Q psy9783          11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN   90 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~   90 (726)
                      ....+||+...|.|||.||+|+-.|++|-|+|+|++.++|.|.||..|+||-| |++...|.+|+++|...|..+||++.
T Consensus        74 V~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~  152 (422)
T KOG2336|consen   74 VDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVV  152 (422)
T ss_pred             hhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeE
Confidence            35678999999999999999999999999999999999999999999999998 68999999999999998888888887


Q ss_pred             eeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhh
Q psy9783          91 IYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNF  170 (726)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~  170 (726)
                      +.+..-..+.   ..                               +.                          +.    
T Consensus       153 iE~hn~NITT---ve-------------------------------nF--------------------------d~----  168 (422)
T KOG2336|consen  153 IEVHNYNITT---VE-------------------------------NF--------------------------DT----  168 (422)
T ss_pred             EEEeecceee---eh-------------------------------hH--------------------------HH----
Confidence            7642110000   00                               00                          00    


Q ss_pred             CCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccC--CccceEEEEeCCCCcceec
Q psy9783         171 NPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA--GYEGQVELIKKGETKCYEC  248 (726)
Q Consensus       171 np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~--G~~G~v~~i~p~~t~cy~C  248 (726)
                              +.++|+...+  .-=+..|+|+.|+||++||..+|..|-..+..|+++|..  ...|+++.+.||.|.||.|
T Consensus       169 --------F~~~is~g~~--~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGetACFAC  238 (422)
T KOG2336|consen  169 --------FTDRISNGSL--CPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGETACFAC  238 (422)
T ss_pred             --------HHHHhhcCCC--CCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCccceecc
Confidence                    0111111100  001458999999999999999999999999999999987  6889999999999999999


Q ss_pred             CCC
Q psy9783         249 DPK  251 (726)
Q Consensus       249 ~~~  251 (726)
                      .|.
T Consensus       239 aPP  241 (422)
T KOG2336|consen  239 APP  241 (422)
T ss_pred             cCc
Confidence            864

>KOG2014|consensus

Probab=99.86  E-value=9.9e-22  Score=205.13  Aligned_cols=152  Identities=22%  Similarity=0.400  Sum_probs=138.1

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +-||+|+||.+.|++|+++||||+|++|+|+|++|||+++||++++++|.-.|....++-|||+..+++|+.||++..++
T Consensus        14 YDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~er   93 (331)
T KOG2014|consen   14 YDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLER   93 (331)
T ss_pred             HHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHH
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      ++++||.+.|.+..                                                                  
T Consensus        94 l~~LNPmV~v~~d~------------------------------------------------------------------  107 (331)
T KOG2014|consen   94 LQDLNPMVDVSVDK------------------------------------------------------------------  107 (331)
T ss_pred             HHhcCCceEEEech------------------------------------------------------------------
Confidence            99999998776531                                                                  


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK  240 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p  240 (726)
                         +.+..                  .+++||.+||+||-.--+.+.+..+|.+|+.++++++.+++.|+.|++..-.-
T Consensus       108 ---edl~e------------------k~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~  165 (331)
T KOG2014|consen  108 ---EDLSE------------------KDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQ  165 (331)
T ss_pred             ---hhhhh------------------cchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehh
Confidence               22221                  24689999999998888999999999999999999999999999999866543

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.85  E-value=1.4e-21  Score=201.58  Aligned_cols=91  Identities=20%  Similarity=0.375  Sum_probs=84.8

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+++||.++|++|++++|+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+||||++. ++|++|+++++++
T Consensus         9 YsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~   87 (287)
T PTZ00245          9 YDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGA   87 (287)
T ss_pred             HhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHH
Confidence            679999999999999999999999999999999999999999999999999999999999999986 7899999999977


Q ss_pred             hhhcCCCCceee
Q psy9783          82 ALNFNPDANIYY   93 (726)
Q Consensus        82 l~~~np~~~v~~   93 (726)
                      ++++||+++|..
T Consensus        88 L~eLNP~V~V~~   99 (287)
T PTZ00245         88 LQRLNPHVSVYD   99 (287)
T ss_pred             HHHHCCCcEEEE
Confidence            777777766553

>KOG2018|consensus

Probab=99.80  E-value=9.8e-20  Score=190.65  Aligned_cols=146  Identities=23%  Similarity=0.311  Sum_probs=125.6

Q ss_pred             cccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHh
Q psy9783           3 TKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSA   82 (726)
Q Consensus         3 ~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l   82 (726)
                      +|.+.+||.++++||+++-|.||||||+|+.++-+|+|+|+++|.|||.|.|+.|-||||......|||.||++++++.+
T Consensus        58 arN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~  137 (430)
T KOG2018|consen   58 ARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHF  137 (430)
T ss_pred             HhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhh
Q psy9783          83 LNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQV  162 (726)
Q Consensus        83 ~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~  162 (726)
                      .++.|.+.|..                                                                     
T Consensus       138 skiaPw~eIda---------------------------------------------------------------------  148 (430)
T KOG2018|consen  138 SKIAPWCEIDA---------------------------------------------------------------------  148 (430)
T ss_pred             HhhCccceecH---------------------------------------------------------------------
Confidence            99998886653                                                                     


Q ss_pred             HHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccc
Q psy9783         163 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEG  233 (726)
Q Consensus       163 ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G  233 (726)
                         ...-|+++             .-.+-++.+.|+|++|+||.+...-+-++|..+++++|.+-..+.+.
T Consensus       149 ---r~~l~~~~-------------s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaaaks  203 (430)
T KOG2018|consen  149 ---RNMLWTSS-------------SEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKS  203 (430)
T ss_pred             ---HHhhcCCC-------------chhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccC
Confidence               11112221             11123456789999999999999999999999999999887555543

>KOG2337|consensus

Probab=99.79  E-value=2.7e-19  Score=196.62  Aligned_cols=206  Identities=22%  Similarity=0.337  Sum_probs=157.5

Q ss_pred             cccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCcc---ChhHHHHHHHHhh
Q psy9783           7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV---GKSKAQVARNSAL   83 (726)
Q Consensus         7 ~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dv---Gk~Ka~va~~~l~   83 (726)
                      |+.+.-..+++.+.|+|+.|||.+||.+|++|.-+||++||++|+.+|..||-.||.||+-+|.   |++||++|+++|+
T Consensus       328 RlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk  407 (669)
T KOG2337|consen  328 RLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLK  407 (669)
T ss_pred             eecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHH
Confidence            5667777899999999999999999999999999999999999999999999999999999997   4999999999999


Q ss_pred             hcCCCCcee-eeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhh
Q psy9783          84 NFNPDANIY-YQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQV  162 (726)
Q Consensus        84 ~~np~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~  162 (726)
                      +|+|.++-+ ++-...+++|.                                                   ++.+-...
T Consensus       408 ~IfP~m~atG~~lsIPMpGH~---------------------------------------------------I~e~~~e~  436 (669)
T KOG2337|consen  408 EIFPSMEATGYVLSIPMPGHP---------------------------------------------------IGESLLEQ  436 (669)
T ss_pred             HhCccccccceEEeccCCCCc---------------------------------------------------cchhhHHH
Confidence            999999865 55555555443                                                   33333333


Q ss_pred             HHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC--
Q psy9783         163 ARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK--  240 (726)
Q Consensus       163 ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p--  240 (726)
                      ++..+...                   +.+++..|+|+..+|++++|+.-.-+|...++-+|++. .|+..++.+-+.  
T Consensus       437 ~~~D~~~L-------------------e~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsylVMRHG~~  496 (669)
T KOG2337|consen  437 TKKDLKRL-------------------EQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSYLVMRHGTG  496 (669)
T ss_pred             HHHHHHHH-------------------HHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccceeEEEecCCC
Confidence            33333322                   46788999999999999999999999999999999887 788777654322  


Q ss_pred             ------------------CCCcceecCCCCCCC-------CCCCccccCCCCCcchhhhhHhHHhHHHH
Q psy9783         241 ------------------GETKCYECDPKPAAK-------TYPGCTIRNTPSEPIHCIVWAKHLFNYLE  284 (726)
Q Consensus       241 ------------------~~t~cy~C~~~~~~~-------~~p~Cti~~~p~~~~h~i~~a~~lf~~lf  284 (726)
                                        ..-+||.|+.--++.       --..||.......+|-. ..|-+|+-.+.
T Consensus       497 ~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtRPG~a~IA~-alAVELlvslL  564 (669)
T KOG2337|consen  497 RKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTRPGVANIAS-ALAVELLVSLL  564 (669)
T ss_pred             CcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccCCchhHHHH-HHHHHHHHHHH
Confidence                              134699999543221       23689988766555422 23444444433

>KOG2016|consensus

Probab=99.79  E-value=1.1e-19  Score=197.00  Aligned_cols=165  Identities=23%  Similarity=0.407  Sum_probs=143.1

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +-||+|+||+.+|..|..++|+++|||++|||++|||++.|+|.++++|...|+.+++..+|+...+++|++||.+..+.
T Consensus        10 YDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~   89 (523)
T KOG2016|consen   10 YDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEF   89 (523)
T ss_pred             HHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      ++++||+++..+...                             +|+                                 
T Consensus        90 LqeLN~~V~~~~vee-----------------------------~p~---------------------------------  107 (523)
T KOG2016|consen   90 LQELNPSVSGSFVEE-----------------------------SPD---------------------------------  107 (523)
T ss_pred             HHHhChhhhcCcccc-----------------------------Chh---------------------------------
Confidence            999999987655322                             121                                 


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG  241 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~  241 (726)
                          .+.                  ..+..||.+|++|+.+-=+.+.-..+.++|+.+++|++.+.+.|+.|.+.++++.
T Consensus       108 ----~Li------------------~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikE  165 (523)
T KOG2016|consen  108 ----FLI------------------DNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKE  165 (523)
T ss_pred             ----hhh------------------hcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeee
Confidence                111                  1245899999999988778888899999999999999999999999999998876


Q ss_pred             CCcceecCCC
Q psy9783         242 ETKCYECDPK  251 (726)
Q Consensus       242 ~t~cy~C~~~  251 (726)
                      . .-.+.+|+
T Consensus       166 H-~iieshPD  174 (523)
T KOG2016|consen  166 H-TIIESHPD  174 (523)
T ss_pred             c-cccccCCC
Confidence            2 23344443

>KOG2012|consensus

Probab=99.78  E-value=2.4e-19  Score=205.10  Aligned_cols=149  Identities=21%  Similarity=0.371  Sum_probs=135.6

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783           1 MATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN   80 (726)
Q Consensus         1 ~~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~   80 (726)
                      +++||++++|.+..++|..++|||.|+||+|.||||||+++||+++||-|.-.+..++|+.||+++++|||+++|++...
T Consensus        19 LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~   98 (1013)
T KOG2012|consen   19 LYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVE   98 (1013)
T ss_pred             hhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchh
Q psy9783          81 SALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKA  160 (726)
Q Consensus        81 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~  160 (726)
                      +|.++|+.|.|.+..                                                                 
T Consensus        99 ~LaeLN~yV~V~v~t-----------------------------------------------------------------  113 (1013)
T KOG2012|consen   99 KLAELNNYVPVVVLT-----------------------------------------------------------------  113 (1013)
T ss_pred             HHHHhhcceeeEEec-----------------------------------------------------------------
Confidence            888888877665422                                                                 


Q ss_pred             hhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         161 QVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       161 ~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                          .     .++++|+++|++|+-+--..+....||.+|+.++|-+|-+.+.|..|++..=.
T Consensus       114 --------------------~-----~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDF  167 (1013)
T KOG2012|consen  114 --------------------G-----PLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDF  167 (1013)
T ss_pred             --------------------C-----cccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccC
Confidence                                1     22358899999999988889999999999999999999999999999986533

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.47  E-value=6e-15  Score=115.53  Aligned_cols=45  Identities=58%  Similarity=1.130  Sum_probs=39.9

Q ss_pred             CCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHH
Q psy9783         241 GETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLER  285 (726)
Q Consensus       241 ~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~  285 (726)
                      +.|+||+|.+++.++++|+|||||+|+.|+|||+|||.+|+.+|+
T Consensus         1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~   45 (45)
T PF10585_consen    1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG   45 (45)
T ss_dssp             TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred             CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence            479999999999988999999999999999999999999999995

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.43  E-value=3.2e-13  Score=153.97  Aligned_cols=137  Identities=19%  Similarity=0.289  Sum_probs=110.3

Q ss_pred             CHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCC
Q psy9783          10 EKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDA   89 (726)
Q Consensus        10 g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~   89 (726)
                      |....++.+++||+|+|+||+|+.++..|+.+|+++|+.+|.|.+ .|||+|        ||+. ++.|++    +||++
T Consensus       120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v  185 (637)
T TIGR03693       120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL  185 (637)
T ss_pred             chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence            445566779999999999999999999999999999999999999 999999        8887 666662    55554


Q ss_pred             ceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783          90 NIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN  169 (726)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~  169 (726)
                      ++.                                                                             
T Consensus       186 ~v~-----------------------------------------------------------------------------  188 (637)
T TIGR03693       186 LVQ-----------------------------------------------------------------------------  188 (637)
T ss_pred             ceE-----------------------------------------------------------------------------
Confidence            443                                                                             


Q ss_pred             hCCCCeEEEEecccccccccccccccccEEEEccC--cHHHHHHHHHHhhhcC---CcEEEEccCCccceEEEEeCCCCc
Q psy9783         170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNALD--NRAARNHVNRMCLASE---VPLIESGTAGYEGQVELIKKGETK  244 (726)
Q Consensus       170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alD--n~~aR~~in~~c~~~~---iPlI~sg~~G~~G~v~~i~p~~t~  244 (726)
                              .+..  ++..--.+.|+++|+|+...|  +..--+++|+.|++.+   +|++.+|..++.|-+..  |+.++
T Consensus       189 --------~i~~--~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTG  256 (637)
T TIGR03693       189 --------EIDF--AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDE  256 (637)
T ss_pred             --------eccC--CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCc
Confidence                    3322  111223467899999999999  4556789999999999   77778888888887765  99999


Q ss_pred             ceecC
Q psy9783         245 CYECD  249 (726)
Q Consensus       245 cy~C~  249 (726)
                      |++|.
T Consensus       257 CWeCa  261 (637)
T TIGR03693       257 CFEAA  261 (637)
T ss_pred             HHHHH
Confidence            99994

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised

Probab=99.27  E-value=1e-12  Score=124.06  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             cchhhhccCCCCCCccccccccCCCCCCCCCCCCCCCeEEE--EEECCC-CcHHHHHHHHHhcccCCccceeEEEecCC-
Q psy9783         535 CQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTI--GLDVTK-MTVAEFEEAVLKKTLNMSAMVDVMVEASG-  610 (726)
Q Consensus       535 ~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~~~~~tl--~id~~~-~TL~~lid~ilk~~l~m~~~pdV~~~~~G-  610 (726)
                      |||+|+|||        +|++.++||.+.........+||+  +++++. +||++|+++| ++++|    .+|++.+.| 
T Consensus         1 yrN~F~NLA--------lP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~-~~~~~----lev~ml~~g~   67 (125)
T PF09358_consen    1 YRNSFLNLA--------LPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYF-KEKYG----LEVTMLSQGV   67 (125)
T ss_dssp             --EEEEETT--------TTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHH-HHTTS-----EEEEEEETT
T ss_pred             CccEEEEcC--------ccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHH-HHHhC----ceEEEEEeCC
Confidence            799999997        799999999986544224446766  777765 9999999998 56677    477888788 


Q ss_pred             eEEEecc-ccccccccCCchhhhhhhcccC---CCCCCCeEEEEecC
Q psy9783         611 SVIISSE-EGETEANNDKPLEHGLIISHRV---SARDGPEFEILDQK  653 (726)
Q Consensus       611 ~ll~ss~-e~e~~~nl~k~L~elv~v~~~~---~~~~~~~feV~~~~  653 (726)
                      +++|+++ ..+.+++++++|+|+|+-+.+.   +..++++|+|+|++
T Consensus        68 ~~LY~~f~~~~~~~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d  114 (125)
T PF09358_consen   68 SLLYSSFPPPKHKERLKMPISELVEEVTKKPIPPGQKYLVLEVSCED  114 (125)
T ss_dssp             EEEEETT-HHHHHHHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-
T ss_pred             EEEEecCChhhhHHHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeC
Confidence            8999999 6778999999999999977765   56778999999984

; PDB: 3CMM_A.

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=98.76  E-value=7.8e-09  Score=92.00  Aligned_cols=73  Identities=34%  Similarity=0.414  Sum_probs=53.6

Q ss_pred             EEEEECCCCcHHHHHHHHHhcccCCccceeEEEecCCeEEEeccccccccccCCchhhhhhhcccC-----CCCCCCeEE
Q psy9783         574 TIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMVEASGSVIISSEEGETEANNDKPLEHGLIISHRV-----SARDGPEFE  648 (726)
Q Consensus       574 tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~~~~G~ll~ss~e~e~~~nl~k~L~elv~v~~~~-----~~~~~~~fe  648 (726)
                      |++++++++||++|++.|++++|||.+ |+|++  .|+++|+++++++++|++|+|+++ -|.+..     ++..+..++
T Consensus         1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~-P~v~~--~~~ilyd~de~~~~~~l~k~L~el-gi~~gs~L~v~D~~q~~~~~   76 (87)
T PF14732_consen    1 TVKVDTKKMTLGDLVEKVLKKKLGMNE-PDVSV--GGTILYDSDEEEYDDNLPKKLSEL-GIVNGSILTVDDFDQDFNLE   76 (87)
T ss_dssp             EEEE-TTT-BHHHHHHHCCCCCS--SS-EEEEE--S-EEEE-SSSSSSTTCTTSBGGGG-T--TT-EEEEEETTTTEEEE
T ss_pred             CEEEechhCcHHHHHHHHHHhccCCCC-CEEEe--CCCEEEcCCcchhhhcccCChhHc-CCCCCCEEEEEEcCCCcEEE
Confidence            678999999999999999999999999 99998  458999999999999999999996 444322     444445555


Q ss_pred             EE
Q psy9783         649 IL  650 (726)
Q Consensus       649 V~  650 (726)
                      |.
T Consensus        77 i~   78 (87)
T PF14732_consen   77 IN   78 (87)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=97.60  E-value=6.8e-05  Score=76.05  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=34.9

Q ss_pred             cCHHHHHHHhcCcEEEEcCchHHHH-HHHHHHHhCCCeEE
Q psy9783           9 FEKDLEDLIKKSKVLVVGAGGIGCE-LLKNLVLSGFSNIE   47 (726)
Q Consensus         9 ~g~~~q~kL~~~kVlvVGaGgiGce-iaknLal~Gv~~i~   47 (726)
                      =+...+++|++++|.|+|.|++|++ ++..|+.+|++.+.
T Consensus        95 ~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~  134 (193)
T TIGR03882        95 DPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP  134 (193)
T ss_pred             CHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC
Confidence            3567789999999999999999999 99999999999765

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=97.28  E-value=0.00035  Score=78.95  Aligned_cols=92  Identities=22%  Similarity=0.327  Sum_probs=63.4

Q ss_pred             hhhcccchHHHHHHHhHHHHHHHHcCCcccCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHH
Q psy9783         369 ASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVR  448 (726)
Q Consensus       369 ~~~c~~~~~~~f~~~F~~~I~~Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~  448 (726)
                      .+.|+.||+.+|+.+|....+.+-   .|+          |                   .+--.|......++|...++
T Consensus       172 ~eHcI~wA~~~F~~lF~~~~~~~~---~~~----------~-------------------~~c~~~a~~~f~~~F~~~I~  219 (435)
T cd01490         172 IEHTIQWARDEFEGLFKQPPENVN---QYL----------F-------------------EDCVRWARLLFEKYFNNNIK  219 (435)
T ss_pred             chHHHHHHHHHHHHHhccchHHHH---Hhh----------H-------------------HHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999986433221   111          1                   01112222333466888888


Q ss_pred             HHHHHhhhh---------h----ccCCCccccCCChhhHHHHHHHHHHhHHhcCCCC
Q psy9783         449 ELKTKFDAA---------V----EKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPE  492 (726)
Q Consensus       449 ~L~~~l~~~---------~----~~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~  492 (726)
                      +|...++.-         |    ....|+.||.+|+.|++||.++|||||.+|+|+.
T Consensus       220 ~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~  276 (435)
T cd01490         220 QLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG  276 (435)
T ss_pred             HHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            887765331         1    1245799999999999999999999999999985

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.20  E-value=0.0013  Score=73.52  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=33.6

Q ss_pred             cccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCC
Q psy9783         189 GVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAG  230 (726)
Q Consensus       189 ~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G  230 (726)
                      -..+++++|+||+|+.-+-.+ .+-+.|.+.++++++.....
T Consensus        62 l~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          62 LVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             HHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence            346788899999999987777 56678999999999977443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.05  E-value=0.0021  Score=68.86  Aligned_cols=36  Identities=31%  Similarity=0.580  Sum_probs=33.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|+|+||.|..++..|+..|+++|+|+|.+
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456789999999999999999999999999999865

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.94  E-value=0.0088  Score=61.12  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|+|||+|.+|...++.|...| .+|+||+.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~   41 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP   41 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence            378899999999999999999999999 68999864

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=96.65  E-value=0.0073  Score=59.90  Aligned_cols=59  Identities=20%  Similarity=0.401  Sum_probs=49.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHH---HhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783          19 KSKVLVVGAGGIGCELLKNLV---LSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLa---l~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +..|.++|||-+|--++-+|.   +-|..+|.++|...|+..++----+  -.-+|.+|++.++
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~   79 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIK   79 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHH
Confidence            446999999999999999987   4588899999999999999843222  3669999999988

>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades

Probab=96.55  E-value=0.0017  Score=57.75  Aligned_cols=51  Identities=18%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             CCcHHHHHHHHHhc-ccCCccceeEEEecCCeEEEec---cccccccccCCchhhhh
Q psy9783         581 KMTVAEFEEAVLKK-TLNMSAMVDVMVEASGSVIISS---EEGETEANNDKPLEHGL  633 (726)
Q Consensus       581 ~~TL~~lid~ilk~-~l~m~~~pdV~~~~~G~ll~ss---~e~e~~~nl~k~L~elv  633 (726)
                      .+||++|++.+.++ .+.|.. |+|+.. .++||+.+   .|..|+.||.|+|.||+
T Consensus         6 ~~TL~~lid~L~~~~~~qlk~-PSlt~~-~k~LYm~~pp~Lee~Tr~NL~k~l~eL~   60 (84)
T PF08825_consen    6 SWTLQDLIDSLCEKPEFQLKK-PSLTTA-NKTLYMQSPPSLEEATRPNLSKKLKELL   60 (84)
T ss_dssp             TSBSHHHHHHHHHSTTT--SS--EEESS-EEEEEESSSHHHHHHTGGGGSSBTTTTH
T ss_pred             cchHHHHHHHHHhChhhhcCC-CcccCC-CceEEEeCCHHHHHHhhhhhhhhHHHHh
Confidence            78999999999766 489999 999833 34888864   45789999999999993

This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.48  E-value=0.0052  Score=55.95  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=31.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .|++.+|+|||.|.+|..=++.|..+| .+++++..+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch
Confidence            478899999999999999999999999 6899998775

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.42  E-value=0.032  Score=57.17  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|||.|.+|..-++.|...|. +++||+.+
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~   41 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE   41 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            678899999999999999999999994 79999865

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.08  E-value=0.016  Score=64.15  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=28.9

Q ss_pred             ccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEE
Q psy9783         190 VNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIE  225 (726)
Q Consensus       190 ~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~  225 (726)
                      ..+++++|+||+|+..+ .-..+-+.|.++++++|+
T Consensus        62 ~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD   96 (386)
T PF03435_consen   62 AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD   96 (386)
T ss_dssp             HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred             HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence            46789999999999887 556788999999999999

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.99  E-value=0.087  Score=51.83  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+.+|+|||.|.+|...++.|...|. +++||+.+
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~   45 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE   45 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence            4788999999999999999999999995 68898655

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.93  E-value=0.012  Score=56.10  Aligned_cols=35  Identities=37%  Similarity=0.542  Sum_probs=33.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .|.+++|+|+|+||.|..+++.|+..|+++|+|+.
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n   43 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN   43 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence            57899999999999999999999999999999976

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.48  E-value=0.12  Score=53.90  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=34.3

Q ss_pred             cccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEcc
Q psy9783         189 GVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGT  228 (726)
Q Consensus       189 ~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~  228 (726)
                      ....+.++++|+.|+|+.+.-..+...|.+.++++..+.-
T Consensus        79 ~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~  118 (223)
T PRK05562         79 DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD  118 (223)
T ss_pred             ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence            3456788999999999999999999999999998776553

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.19  E-value=0.071  Score=57.29  Aligned_cols=35  Identities=31%  Similarity=0.558  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++++|+|+||+|..++..|+..|+.+|+|++.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R  158 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI  158 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            45678999999999999999999999999999874

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.92  E-value=0.031  Score=58.13  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=34.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D   52 (726)
                      .+.+.+|+|+|+|+.|+.+++.|+..|++  +|.|+|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            47788999999999999999999999999  99999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.72  E-value=0.055  Score=46.55  Aligned_cols=31  Identities=32%  Similarity=0.607  Sum_probs=27.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||+|||+|-+|+|+|..|+..| .+++|++..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~   31 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG-KEVTLIERS   31 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHhC-cEEEEEecc
Confidence            6899999999999999999999 478888754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.22  E-value=0.32  Score=51.87  Aligned_cols=32  Identities=31%  Similarity=0.618  Sum_probs=28.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999996 69999854

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.12  E-value=0.074  Score=60.11  Aligned_cols=46  Identities=37%  Similarity=0.523  Sum_probs=39.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHH
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARN   80 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~   80 (726)
                      .|..++|+|||+|-+|.-++++|...|+..|+|          +||++-         ||+-+++
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~e---------rA~~La~  220 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTLE---------RAEELAK  220 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCHH---------HHHHHHH
Confidence            378889999999999999999999999999999          577752         6776664

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.80  E-value=0.22  Score=56.13  Aligned_cols=36  Identities=42%  Similarity=0.460  Sum_probs=32.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      |++++|+|+|+|++|.++|+.|+..|. +++++|.+.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            568999999999999999999999995 699998653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.61  E-value=0.62  Score=49.49  Aligned_cols=32  Identities=28%  Similarity=0.636  Sum_probs=28.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            479999999999999999999997 68888854

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.59  E-value=0.38  Score=52.83  Aligned_cols=93  Identities=11%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             cccccccEEEEccC-cHHHHHHHHHHhhhcCC--cEEEEccCCccce-EEEEeCCCCcceecCCCCCCCCCCCccccCCC
Q psy9783         191 NYFKQFTLVMNALD-NRAARNHVNRMCLASEV--PLIESGTAGYEGQ-VELIKKGETKCYECDPKPAAKTYPGCTIRNTP  266 (726)
Q Consensus       191 ~~~~~~DlVi~alD-n~~aR~~in~~c~~~~i--PlI~sg~~G~~G~-v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p  266 (726)
                      +.+.++|+|+.|+- +.+.+..+-+-..+.-.  -+|.+.|.|.... +.-...+-..|...++-.++...|..-+-..|
T Consensus        79 ~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~  158 (321)
T PRK07066         79 ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGE  158 (321)
T ss_pred             HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence            45689999999864 55545443332222211  2788887765321 11111222346666666666666777777777


Q ss_pred             CCcchhhhhHhHHhHHH
Q psy9783         267 SEPIHCIVWAKHLFNYL  283 (726)
Q Consensus       267 ~~~~h~i~~a~~lf~~l  283 (726)
                      .+..-.+.++..++..+
T Consensus       159 ~T~~e~~~~~~~f~~~l  175 (321)
T PRK07066        159 RTAPEAVDAAMGIYRAL  175 (321)
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            77777888888877663

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.57  E-value=0.49  Score=50.80  Aligned_cols=32  Identities=19%  Similarity=0.509  Sum_probs=28.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999996 68888844

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=93.35  E-value=0.49  Score=44.05  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             ccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783         190 VNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG  227 (726)
Q Consensus       190 ~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg  227 (726)
                      ...+.+.|+|+.|+++..++.+...+ ...++++|+..
T Consensus        61 ~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s   97 (121)
T PF01118_consen   61 PEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS   97 (121)
T ss_dssp             GHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred             hhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence            34468999999999999888888776 88899999866

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.33  E-value=0.15  Score=54.82  Aligned_cols=92  Identities=13%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             cccccEEEEccC-cHHHHHHHHHHhhh----cCCcEEEEccCCc-cceEEEEeCCCCcceecCCCCCCCCCCCccccCCC
Q psy9783         193 FKQFTLVMNALD-NRAARNHVNRMCLA----SEVPLIESGTAGY-EGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTP  266 (726)
Q Consensus       193 ~~~~DlVi~alD-n~~aR~~in~~c~~----~~iPlI~sg~~G~-~G~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p  266 (726)
                      ++++|+|+.|+- +.+.+..+-.....    .+..+ .+.|.+. .............+...++-.+....|...+.-.+
T Consensus        82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il-~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~  160 (286)
T PRK07819         82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVL-ASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTL  160 (286)
T ss_pred             hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCC
Confidence            689999999864 45555544333222    23433 3433332 11111122222335555555444556777888888


Q ss_pred             CCcchhhhhHhHHhHHHHH
Q psy9783         267 SEPIHCIVWAKHLFNYLER  285 (726)
Q Consensus       267 ~~~~h~i~~a~~lf~~lf~  285 (726)
                      ......+.+++.++....+
T Consensus       161 ~T~~~~~~~~~~~~~~~lg  179 (286)
T PRK07819        161 VTSEATVARAEEFASDVLG  179 (286)
T ss_pred             CCCHHHHHHHHHHHHHhCC
Confidence            8888899999887665444

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.21  E-value=0.3  Score=50.51  Aligned_cols=42  Identities=12%  Similarity=0.188  Sum_probs=34.4

Q ss_pred             ccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccC
Q psy9783         188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA  229 (726)
Q Consensus       188 ~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~  229 (726)
                      |....+..+++|+-|+|+.+--..+-+.|..+++|+-.+.-.
T Consensus        65 ~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p  106 (210)
T COG1648          65 FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDP  106 (210)
T ss_pred             cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCc
Confidence            444556669999999999999999999999999987655533

>PRK10637 cysG siroheme synthase; Provisional

Probab=92.99  E-value=0.84  Score=52.30  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=33.0

Q ss_pred             ccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783         188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG  227 (726)
Q Consensus       188 ~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg  227 (726)
                      |....+.++++|+.|+|+.+.-..+-+.|...++++-.+.
T Consensus        65 ~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d  104 (457)
T PRK10637         65 FDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVD  104 (457)
T ss_pred             CChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECC
Confidence            3446678999999999999999999999999998754433

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.72  E-value=0.74  Score=47.88  Aligned_cols=32  Identities=31%  Similarity=0.681  Sum_probs=28.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++++|+|+|-+|..+|+.|+..| .++++||.|
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d   32 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD   32 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC
Confidence            47999999999999999999999 457788866

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.71  E-value=0.18  Score=44.31  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      +..++++|+|+|++|..++..|...|...+.+.|.|.+
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~   58 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDIL   58 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            67899999999999999999999998889999988443

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK04148 hypothetical protein; Provisional

Probab=92.65  E-value=0.62  Score=45.14  Aligned_cols=50  Identities=16%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             EecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCC
Q psy9783         179 HHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAG  230 (726)
Q Consensus       179 ~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G  230 (726)
                      ..++++++  +.++++++|+|-..--..+-...+-+++.+.+.+++---..|
T Consensus        63 v~dDlf~p--~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         63 FVDDLFNP--NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             EECcCCCC--CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            33444433  246789999999999999999999999999999998655443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=92.57  E-value=0.15  Score=54.66  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..++|+|+|+||.|..++..|+..|+.+|+|++.
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR  157 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR  157 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence            45678999999999999999999999999999863

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>KOG2013|consensus

Probab=92.52  E-value=0.036  Score=62.95  Aligned_cols=55  Identities=20%  Similarity=0.044  Sum_probs=43.5

Q ss_pred             CccccCCChhhHHHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHH
Q psy9783         463 HLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVA  517 (726)
Q Consensus       463 ~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVA  517 (726)
                      .+.|++-+-...-|++--.-||...-.-.+.++-.--.+|+.|.|+.-|-|++++
T Consensus       242 ~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q  296 (603)
T KOG2013|consen  242 NLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQ  296 (603)
T ss_pred             ccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhh
Confidence            3444444444477888888899888888887777788899999999999999988

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.39  E-value=0.18  Score=47.94  Aligned_cols=36  Identities=36%  Similarity=0.494  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|++|..+++.|+..|...++++|.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            456899999999999999999999987788988743

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=92.22  E-value=0.7  Score=48.87  Aligned_cols=38  Identities=16%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCcc
Q psy9783         193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYE  232 (726)
Q Consensus       193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~  232 (726)
                      +..+|+|++++ ...+-..+-..|.++++|++.+ +.|+.
T Consensus        58 l~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s   95 (257)
T PRK00048         58 LADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFT   95 (257)
T ss_pred             ccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCC
Confidence            44689999988 4555577788999999999944 66663

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=92.13  E-value=0.19  Score=53.67  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|+|+||+|..+++.|...|+.+|+|++.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R  155 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNR  155 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence            56789999999999999999999999999999864

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=91.43  E-value=0.26  Score=49.06  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..|.+++|.|||+|.||.++++.|...|. ++..+|..
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~   68 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS   68 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence            36789999999999999999999999998 78888754

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=91.42  E-value=0.71  Score=57.93  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=27.0

Q ss_pred             ccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783         192 YFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG  227 (726)
Q Consensus       192 ~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg  227 (726)
                      +++++|+||+|+-.. .-..+.+.|.++++.+++..
T Consensus       645 ~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        645 YVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             hhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence            456799999999774 34567788999999998653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=91.38  E-value=0.54  Score=44.26  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY  231 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~  231 (726)
                      .++..+|+||+.+ ++++-...-++|.++++|+|- ||.|+
T Consensus        63 ~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~Vi-GTTG~  101 (124)
T PF01113_consen   63 ELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVI-GTTGF  101 (124)
T ss_dssp             HHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEE-E-SSS
T ss_pred             HhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEE-ECCCC
Confidence            4566699999999 778888888899999999985 44555

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=91.35  E-value=0.25  Score=53.21  Aligned_cols=36  Identities=39%  Similarity=0.658  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|+|+||.|..++-.|+..|+.+|+|+|.+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  160 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            446789999999999999999999999999998643

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.24  E-value=0.35  Score=50.68  Aligned_cols=31  Identities=26%  Similarity=0.551  Sum_probs=25.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC--CeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF--SNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv--~~i~iiD   50 (726)
                      .+|.|||+|.+|..++..|...|.  ..+.++|
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~   35 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD   35 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence            479999999999999999999984  3455655

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.09  E-value=0.29  Score=52.85  Aligned_cols=34  Identities=24%  Similarity=0.510  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.+++|+|+|+||.+..++-.|+..|+.+|+|++
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~n  155 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN  155 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            4667899999999999999999999999999987

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=91.06  E-value=0.24  Score=56.19  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .+.+++|+|||+|++|..++++|+..|+.+|+|+.
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n  212 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN  212 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence            46788999999999999999999999999999964

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=90.63  E-value=0.4  Score=46.27  Aligned_cols=33  Identities=33%  Similarity=0.653  Sum_probs=29.5

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .||.|||+ |.+|+.++-.|+..|+. +|.|+|.+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            38999999 99999999999999996 59999843

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.62  E-value=0.32  Score=53.25  Aligned_cols=36  Identities=28%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++..||.|||+|.+|..++-.|+..|+..|.|+|-+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~   39 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV   39 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            456799999999999999999999998779999853

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=90.61  E-value=0.31  Score=55.18  Aligned_cols=36  Identities=33%  Similarity=0.511  Sum_probs=33.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            367789999999999999999999999999999875

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=90.59  E-value=0.36  Score=51.42  Aligned_cols=39  Identities=26%  Similarity=0.492  Sum_probs=33.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLS----GF------SNIEIVDLDTI   54 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~----Gv------~~i~iiD~D~I   54 (726)
                      +|.+.||+++|+|+.|+-+++.|+.+    |+      ++|.++|..-+
T Consensus        22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl   70 (255)
T PF03949_consen   22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL   70 (255)
T ss_dssp             -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred             CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence            58999999999999999999999999    99      79999998754

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.58  E-value=0.35  Score=52.34  Aligned_cols=33  Identities=30%  Similarity=0.696  Sum_probs=30.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      +||.|||+|++|+.++..|+..|+. +|.++|.+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~   34 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN   34 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3799999999999999999999985 89999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.53  E-value=0.3  Score=52.75  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..||+|+|+|+||+.++-.|+++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            4689999999999999999999994 68888764

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.50  E-value=0.33  Score=52.99  Aligned_cols=36  Identities=22%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+.||.|||+|.+|..++-.|++.|+..|.|+|-+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            356799999999999999999999998889999954

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=89.89  E-value=1.2  Score=52.25  Aligned_cols=44  Identities=25%  Similarity=0.399  Sum_probs=37.7

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          11 KDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ......+.+++|+|-|+ |+||+|+++.++..+..+|.++|.|..
T Consensus       242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~  286 (588)
T COG1086         242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY  286 (588)
T ss_pred             HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH
Confidence            34567789999999985 569999999999999999999987753

>PLN02427 UDP-apiose/xylose synthase

Probab=89.84  E-value=1.3  Score=48.83  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .++.++|||.| +|-||+++++.|+..|-.++..+|.
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            56678999998 5999999999999985346777774

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=89.82  E-value=2.6  Score=49.82  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .++.|+|.| .|+||..+++.|+..|. ++.+++.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R  112 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR  112 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            455688888 59999999999999996 4665543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=89.71  E-value=2.1  Score=41.56  Aligned_cols=27  Identities=37%  Similarity=0.616  Sum_probs=23.4

Q ss_pred             EEEEcC-chHHHHHHHHHHHhCCCeEEEE
Q psy9783          22 VLVVGA-GGIGCELLKNLVLSGFSNIEIV   49 (726)
Q Consensus        22 VlvVGa-GgiGceiaknLal~Gv~~i~ii   49 (726)
                      |+|+|+ |.+|..+++.|...| .+++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~   28 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTAL   28 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEE
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence            789997 999999999999999 556553

...

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.68  E-value=0.44  Score=48.64  Aligned_cols=35  Identities=26%  Similarity=0.525  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            677899999999999999999999996 67788754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.56  E-value=0.41  Score=53.06  Aligned_cols=37  Identities=32%  Similarity=0.477  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHH-hCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVL-SGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal-~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|+|+ |.||+++++.|+. .|+.++++++.+
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~  190 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ  190 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence            467899999998 8999999999985 589999998643

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=89.46  E-value=0.39  Score=42.39  Aligned_cols=58  Identities=21%  Similarity=0.313  Sum_probs=29.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHhhhhcccch--hhhccCCCCCCccccccccCCCCCCCCCCCCC
Q psy9783         506 IPAIATSNAIVAGLVVLHAIHVLQARFSSCQT--VYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSP  569 (726)
Q Consensus       506 IPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn--~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~  569 (726)
                      +.-+.++.++|++++++|++|+|.|.-+...+  .+++...+.     .-.+.+ .++|.|.+|+.
T Consensus        23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~-----~~~i~~-~k~~~C~~C~~   82 (84)
T PF05237_consen   23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMS-----FRSIRI-KKNPDCPVCGP   82 (84)
T ss_dssp             S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTE-----EEEEE-----TT-TTT--
T ss_pred             cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCe-----EEEEec-CCCccCcCcCc
Confidence            34577888999999999999999974222121  222332111     111222 37999999976

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>PRK06197 short chain dehydrogenase; Provisional

Probab=89.42  E-value=0.9  Score=48.27  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             HHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          14 EDLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        14 q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ...+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus        11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197         11 IPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             cccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            3457788899998 59999999999999996 5767653

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=89.22  E-value=0.47  Score=51.51  Aligned_cols=36  Identities=39%  Similarity=0.574  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|.+|..+++.|...|..+|+++|.+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~  211 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT  211 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            578999999999999999999999999999998754

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=89.12  E-value=0.47  Score=53.70  Aligned_cols=36  Identities=33%  Similarity=0.537  Sum_probs=32.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+.+|+|+|+|++|..+++.|...|+.+++++|.+
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~  215 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT  215 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            677899999999999999999999999999998654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.10  E-value=0.48  Score=51.70  Aligned_cols=33  Identities=33%  Similarity=0.653  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      ..||.|||||.+|+.++-.|+..|+. +|.|+|-
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            46999999999999999999999985 7999984

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=89.02  E-value=3.4  Score=44.47  Aligned_cols=31  Identities=19%  Similarity=0.419  Sum_probs=27.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.+||+|.+|..++++|+..|. ++.+.|.+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~   32 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRN   32 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            79999999999999999999996 57787765

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=88.98  E-value=0.37  Score=51.30  Aligned_cols=40  Identities=28%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCC----------eEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS----------NIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~----------~i~iiD~D~I   54 (726)
                      .+|.+.||+++|+|+.|.-+++.|..+|++          +|.++|..-+
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl   70 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL   70 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence            468889999999999999999999999997          9999997754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=88.85  E-value=3.3  Score=44.85  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=25.9

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|||.|+ |-||+++++.|...|=.++..+|.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            47999996 999999999999764246777764

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=88.79  E-value=0.53  Score=50.83  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=35.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLS----GF------SNIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~----Gv------~~i~iiD~D~I   54 (726)
                      .+|.+.||+++|+|+.|+-+++.|+.+    |+      ++|.++|.+-+
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl   70 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL   70 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence            467889999999999999999999998    99      69999997754

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.73  E-value=0.58  Score=46.78  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCchH-HHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGI-GCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgi-GceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            368899999999985 8889999999998 6888874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.70  E-value=0.57  Score=49.58  Aligned_cols=31  Identities=29%  Similarity=0.511  Sum_probs=27.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+|+|+|++|+.++..|+..| .+++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence            7999999999999999999999 468888853

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=88.63  E-value=0.54  Score=50.69  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999999999999999999999997 8888774

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=88.46  E-value=0.65  Score=49.82  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|+|+|+||.|..++-.|+..|+.+|+|++.
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR  154 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR  154 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            58999999999999999999999999999874

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=88.35  E-value=0.54  Score=52.07  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV   49 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~ii   49 (726)
                      .|.+++|||||+|-+|..++++|...|+++|+|.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~  204 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFC  204 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEE
Confidence            4788999999999999999999999999999995

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=88.14  E-value=0.61  Score=50.38  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+|+|||+|++|+.++..|+.+| ..++++..+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~   37 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRS   37 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeC
Confidence            468999999999999999999999 567887654

>PRK07063 short chain dehydrogenase; Provisional

Probab=88.11  E-value=2  Score=44.19  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +|.+++|+|.| .||||.++++.|+..|. ++.++|
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~   38 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALAD   38 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            36778899998 68999999999999996 477776

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=87.97  E-value=0.48  Score=51.45  Aligned_cols=41  Identities=37%  Similarity=0.600  Sum_probs=31.7

Q ss_pred             EEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcC
Q psy9783          22 VLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQ   62 (726)
Q Consensus        22 VlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQ   62 (726)
                      |||.| +|.||+|+++.|+..|..+|.++|.|.-...++.+.
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~   42 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE   42 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH
Confidence            67886 889999999999999999999999886544444443

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.89  E-value=0.66  Score=48.18  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=34.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .|..++|+|.|.|.+|..+++.|...|..-+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            46789999999999999999999999999999999663

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK09242 tropinone reductase; Provisional

Probab=87.88  E-value=1.8  Score=44.31  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+.+++++|+| .||||.++++.|+..|. ++.+++.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r   41 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVAR   41 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            36778999998 58999999999999996 5777764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=87.71  E-value=2.4  Score=46.22  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +++.++|+|.| +|-||+++++.|...|. +++.+|..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35568999999 59999999999999984 67788753

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=87.49  E-value=0.67  Score=46.47  Aligned_cols=31  Identities=29%  Similarity=0.560  Sum_probs=26.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.|||+|.+|.-++-.+++.|+ +++++|.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            68999999999999999999994 58998864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=87.48  E-value=0.7  Score=50.40  Aligned_cols=31  Identities=35%  Similarity=0.710  Sum_probs=28.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      ||.|||+|.+|+.+|-.|+..|+ ++|.|+|-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            68999999999999999999998 57999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00203 glutamyl-tRNA reductase

Probab=87.41  E-value=0.62  Score=54.38  Aligned_cols=35  Identities=37%  Similarity=0.610  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |.+++|+|||+|.+|..+++.|...|+.+|++++.
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR  298 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR  298 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            55789999999999999999999999999999763

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.41  E-value=0.66  Score=50.57  Aligned_cols=29  Identities=34%  Similarity=0.651  Sum_probs=25.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIV   49 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~ii   49 (726)
                      .||+|+|+|++||.++-.|+++| ..++++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~   29 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLL   29 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence            48999999999999999999999 766664

>PRK05854 short chain dehydrogenase; Provisional

Probab=87.24  E-value=2  Score=46.27  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R   46 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR   46 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            35678888887 78999999999999995 6777653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.15  E-value=3.5  Score=46.36  Aligned_cols=32  Identities=34%  Similarity=0.639  Sum_probs=27.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|+|+|+|.+|..+++.|...|. .++++|.|
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~   32 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTD   32 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            379999999999999999999886 57788854

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.85  E-value=0.85  Score=48.72  Aligned_cols=32  Identities=28%  Similarity=0.567  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVS   35 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999997 68888854

>PRK08618 ornithine cyclodeaminase; Validated

Probab=86.78  E-value=2.2  Score=46.69  Aligned_cols=35  Identities=11%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLV-LSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLa-l~Gv~~i~iiD~D   52 (726)
                      ..++|+|||+|+.|-..+..|. ..|+.++.|+|.+
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~  161 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT  161 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence            4678999999999998888775 5689999998644

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=86.75  E-value=0.96  Score=47.75  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      .|+|||+|-+|+.+|-.|++.|. +++|+|.+.+-
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~   34 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG   34 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence            38999999999999999999998 89999999553

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=86.73  E-value=1.1  Score=49.63  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLS-GFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~-Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|-+|+.+|-.|++. |..+++|+|.+.+-
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~   67 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG   67 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence            45799999999999999999985 88789999987654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=86.71  E-value=3.8  Score=42.17  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=23.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGF   43 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv   43 (726)
                      ...||.|||+|.+|..+++.|+..|.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~   28 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSK   28 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence            35689999999999999999998873

>PLN02206 UDP-glucuronate decarboxylase

Probab=86.66  E-value=4.5  Score=46.23  Aligned_cols=33  Identities=36%  Similarity=0.549  Sum_probs=27.7

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+||||.| +|-||+++++.|...|. ++.++|.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~  151 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN  151 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence            557899999 69999999999999995 4666664

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=86.58  E-value=0.78  Score=49.81  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=31.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ...|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            3569999999999999999999996 6999998754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=86.53  E-value=0.87  Score=50.46  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ++|+|||+|-+|+.+|-.|++.|. +++|+|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            489999999999999999999996 699999875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.52  E-value=0.67  Score=48.74  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=37.2

Q ss_pred             EeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCC
Q psy9783         131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDA  174 (726)
Q Consensus       131 i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~  174 (726)
                      |+..-...++-.+||||++|...++|++|++++++.+.++||++
T Consensus        51 i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v   94 (240)
T TIGR02355        51 LTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHI   94 (240)
T ss_pred             EEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCc
Confidence            33344445677899999999999999999999999999999974

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=86.51  E-value=0.86  Score=50.34  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        14 q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .+.|++++|.|||.|.+|..+|++|..+|+ ++.+.|
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~   46 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV   46 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence            578999999999999999999999999998 466655

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=86.25  E-value=1.1  Score=42.52  Aligned_cols=28  Identities=32%  Similarity=0.670  Sum_probs=24.2

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          22 VLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        22 VlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      |+|+|+|++|+.++-.|...|.. +++++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~   28 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS   28 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence            78999999999999999997754 77765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=85.93  E-value=0.88  Score=51.89  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            578899999999999999999999998 699988653

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=85.86  E-value=0.72  Score=52.21  Aligned_cols=40  Identities=33%  Similarity=0.527  Sum_probs=36.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~I   54 (726)
                      ++|+..||++.|+|+.|+.+++.|..+|+.  +|.++|.--+
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~  236 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL  236 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence            468889999999999999999999999998  9999996533

>PRK06223 malate dehydrogenase; Reviewed

Probab=85.78  E-value=1  Score=48.34  Aligned_cols=32  Identities=28%  Similarity=0.632  Sum_probs=29.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||.|||+|.+|..++-.|+..|.+++.++|-
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999998669999986

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.57  E-value=1.1  Score=47.83  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      -++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999996 58888744

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=85.55  E-value=1  Score=49.20  Aligned_cols=33  Identities=30%  Similarity=0.613  Sum_probs=29.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      ..||.|||+|.+|+.++-.|+..|.. +|.|+|-
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~   36 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV   36 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            46999999999999999999999985 6999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.50  E-value=0.97  Score=49.73  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||.++++.|...|. ++..+|.
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~  181 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR  181 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5889999999999999999999998886 5777774

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.48  E-value=1.1  Score=48.58  Aligned_cols=35  Identities=34%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|+|+|++|-.+++.|..+|. +++++|.+
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            468999999999999999999999997 89998754

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=85.46  E-value=1.2  Score=48.41  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSN   58 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sN   58 (726)
                      .+.+|+|||+|-+|+.+|-.|++.|. +++++|.+.+-..+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~   42 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGA   42 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcc
Confidence            45789999999999999999999999 99999988885433

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=85.41  E-value=0.93  Score=53.00  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|+|+||+|..++..|+..|+ +|.+++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            457889999999999999999999999 8998763

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=85.39  E-value=4.3  Score=49.26  Aligned_cols=91  Identities=11%  Similarity=0.037  Sum_probs=50.5

Q ss_pred             cccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccc-eEEEEeCCCCcceecCCCCCCCCCCCccccCCCCC
Q psy9783         193 FKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEG-QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSE  268 (726)
Q Consensus       193 ~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G-~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~  268 (726)
                      ++++|+||.|+ .+.+....+-+..-..-.  .+|.+-|.++.= .+.-.......+...++-.++...|..-|-..+.+
T Consensus       390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T  469 (715)
T PRK11730        390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKT  469 (715)
T ss_pred             hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCC
Confidence            68999999984 566665555444433322  366666665421 11111122233555555544445566666666666


Q ss_pred             cchhhhhHhHHhHHH
Q psy9783         269 PIHCIVWAKHLFNYL  283 (726)
Q Consensus       269 ~~h~i~~a~~lf~~l  283 (726)
                      ...++.++..+...+
T Consensus       470 ~~~~~~~~~~~~~~l  484 (715)
T PRK11730        470 SDETIATVVAYASKM  484 (715)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            777777777765543

>PRK08251 short chain dehydrogenase; Provisional

Probab=85.31  E-value=4.2  Score=41.28  Aligned_cols=32  Identities=19%  Similarity=0.574  Sum_probs=27.1

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +++++|.| .||||.++++.|+..|. ++.+++.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r   34 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCAR   34 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            46788887 89999999999999994 6777764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=85.23  E-value=3.7  Score=42.93  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..|+.++|+|.|.|.+|..+++.|...|+.-+.|.|.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34788999999999999999999999998877788864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=85.14  E-value=1.1  Score=51.35  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+|+|||+|-+||+.|-.|++.|+. ++|+|+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp   35 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP   35 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence            35799999999999999999999975 88888643

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.09  E-value=1.1  Score=47.65  Aligned_cols=32  Identities=38%  Similarity=0.661  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|.|||+|.+|..++.+|+..|. +++++|.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   33 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIK   33 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            479999999999999999999996 58888865

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=85.05  E-value=1  Score=49.46  Aligned_cols=33  Identities=36%  Similarity=0.701  Sum_probs=30.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .||.|||+|.+|+.+|-.|+.-|++ ++.|+|-.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence            4899999999999999999999999 99999944

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=85.05  E-value=1.2  Score=48.25  Aligned_cols=31  Identities=45%  Similarity=0.690  Sum_probs=28.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      ||.|||+|.+|+.++-.|+..|+ .++.++|.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            79999999999999999999996 68999994

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.81  E-value=1.2  Score=49.06  Aligned_cols=36  Identities=28%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|.|||+|.||..+++.|...|. ++..+|..
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~  178 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY  178 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            5888999999999999999999998886 57788743

>PRK08655 prephenate dehydrogenase; Provisional

Probab=84.81  E-value=1.5  Score=50.05  Aligned_cols=31  Identities=29%  Similarity=0.578  Sum_probs=26.9

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+||| +|++|..+++.|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            799997 89999999999999995 68887753

>PRK12367 short chain dehydrogenase; Provisional

Probab=84.78  E-value=1.6  Score=45.60  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          11 KDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +-.|.++..++++|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus         6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            34688999999999985 8999999999999996 57777754

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=84.68  E-value=1.3  Score=48.06  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ..+|+|+|+||.+-.++-.|+..|+.+|+|+.
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N  157 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGAKRITVVN  157 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            57899999999999999999999999999964

>PRK07062 short chain dehydrogenase; Provisional

Probab=84.58  E-value=3.3  Score=42.69  Aligned_cols=35  Identities=29%  Similarity=0.463  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.++.++|.|+ ||||.++++.|+..|.. +.+++.+
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~   41 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRD   41 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            56788999985 79999999999999974 7777643

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=84.56  E-value=1.2  Score=48.39  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      .|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 6999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02928 oxidoreductase family protein

Probab=84.55  E-value=1  Score=49.94  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||.++++.|...|. ++..+|.
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            5889999999999999999999998887 6777764

>CHL00194 ycf39 Ycf39; Provisional

Probab=84.48  E-value=7.3  Score=41.80  Aligned_cols=30  Identities=20%  Similarity=0.560  Sum_probs=25.4

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|+|.| .|-+|.++++.|...|. +++.++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R   32 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR   32 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence            799999 59999999999999995 5776653

>PRK08264 short chain dehydrogenase; Validated

Probab=84.44  E-value=1.3  Score=44.67  Aligned_cols=36  Identities=33%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|.| .|+||.++++.|+..|..++.+++.+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~   40 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD   40 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence            4667899998 69999999999999998778888754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.38  E-value=1.1  Score=51.09  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|+|+|++|.++|+.|...|. +++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            457799999999999999999999997 59999854

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=84.30  E-value=1.3  Score=48.95  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=29.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            69999999999999999999995 699999874

>TIGR00518 alaDH alanine dehydrogenase

Probab=84.28  E-value=1.2  Score=49.66  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|.+|..+++.|..+|+ +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            567889999999999999999999998 69999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=84.23  E-value=1.3  Score=47.89  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~   34 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDAD   34 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCC
Confidence            379999999999999999999996 68898855

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=84.22  E-value=4.2  Score=43.03  Aligned_cols=31  Identities=39%  Similarity=0.575  Sum_probs=26.6

Q ss_pred             EEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          22 VLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        22 VlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |||.| +|-||+++++.|+..|...+.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            68887 69999999999999998778887753

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=84.18  E-value=1.3  Score=47.72  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ..+|+|||+|.+|..++..|...|+ .+++++|.+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3589999999999999999999997 478888753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.10  E-value=1.1  Score=45.30  Aligned_cols=35  Identities=20%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|+| .|+||.++++.|+..|.. +.+++.+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5678999998 589999999999999975 8888754

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=84.02  E-value=0.71  Score=50.42  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+..++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~  167 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR  167 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4788999999999999999999998887 4667764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=83.98  E-value=1.4  Score=46.63  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=29.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..++|+|+|+||+|..++..|+..|. +++++|.
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R  148 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR  148 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46789999999999999999999996 8888863

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=83.98  E-value=1.2  Score=48.34  Aligned_cols=31  Identities=32%  Similarity=0.668  Sum_probs=27.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|+|||+|.+|+.++..|+..|. +++++|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r   33 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGR   33 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEec
Confidence            579999999999999999999995 5888875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=83.97  E-value=1.9  Score=39.13  Aligned_cols=32  Identities=31%  Similarity=0.582  Sum_probs=27.0

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      |+|+|+|.+|-++++.|...| -.++++|.|.-
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH
Confidence            689999999999999999944 68999998853

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=83.95  E-value=1.3  Score=50.39  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|.||..+++.+..+|. +++++|.|
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d  234 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD  234 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467899999999999999999999999 68888865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=83.94  E-value=5.7  Score=43.92  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+++|+|.|+ |-||.++++.|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4578999996 9999999999999984 6888874

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=83.83  E-value=8  Score=41.63  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.+||+|.+|..++++|+..|+ .+++.|.+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~   32 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN   32 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence            69999999999999999999996 57777754

>PRK06841 short chain dehydrogenase; Provisional

Probab=83.67  E-value=1.5  Score=44.83  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r   47 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR   47 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999995 9999999999999996 5777764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=83.64  E-value=1.3  Score=46.92  Aligned_cols=31  Identities=26%  Similarity=0.441  Sum_probs=26.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||+|+|+|++|+.++..|+..|. ++++++.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            379999999999999999999984 5777763

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=83.58  E-value=1.4  Score=44.75  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |++++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r   37 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR   37 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            56789999996 8999999999999997 5777663

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=83.58  E-value=1.3  Score=46.71  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+|+|||+|-.|+.+|..|++.|+. ++|+|...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP   34 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence            4699999999999999999999977 88888654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06057 short chain dehydrogenase; Provisional

Probab=83.52  E-value=1.4  Score=45.23  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.+++|+|+|+ |+||.++++.|+..|. ++.++|.+
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~   40 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID   40 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            367789999996 9999999999999995 57777643

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.38  E-value=1.3  Score=50.95  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=34.5

Q ss_pred             HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          12 DLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        12 ~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus         8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   47 (473)
T PRK00141          8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN   47 (473)
T ss_pred             hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            44556778899999999999999999999998 89998853

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=83.33  E-value=1.5  Score=46.77  Aligned_cols=32  Identities=34%  Similarity=0.544  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999995 68888854

>KOG2015|consensus

Probab=83.22  E-value=0.46  Score=52.06  Aligned_cols=23  Identities=52%  Similarity=0.869  Sum_probs=21.2

Q ss_pred             hhhhhhchhhhhhccccCcchhh
Q psy9783         139 IRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus       139 ~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |+..+|||||||++.++|++|++
T Consensus        75 Id~sNLNRQFLF~~~DiG~pKAq   97 (422)
T KOG2015|consen   75 IDLSNLNRQFLFRESDIGEPKAQ   97 (422)
T ss_pred             eecccchhhhcccccccCchhHH
Confidence            66789999999999999999994

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.18  E-value=1.6  Score=44.07  Aligned_cols=35  Identities=23%  Similarity=0.586  Sum_probs=29.9

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++++|+|+ |+||..+++.|+..|. ++.++|.+
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56789999996 9999999999999996 58887743

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=83.09  E-value=1.4  Score=47.79  Aligned_cols=31  Identities=29%  Similarity=0.696  Sum_probs=27.5

Q ss_pred             EEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          22 VLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        22 VlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      |.|||+|++|+.++-.|+..|+ .+|+++|.+
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~   32 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            5799999999999999999998 579999953

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=83.05  E-value=1.6  Score=48.35  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        14 q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ...|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            457889999999999999999999999998 455544

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=82.97  E-value=7  Score=41.71  Aligned_cols=29  Identities=34%  Similarity=0.649  Sum_probs=25.1

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||||.|+ |-||+++++.|...|  +++.+|.
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~   31 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDV   31 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEecc
Confidence            7999995 999999999999888  5777774

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.95  E-value=1.6  Score=47.29  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.|+|+|++|+.++..|+..| .++++++.+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence            6999999999999999999999 457787654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=82.89  E-value=1.7  Score=52.69  Aligned_cols=91  Identities=12%  Similarity=0.079  Sum_probs=56.2

Q ss_pred             ccccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccc-eEEEEeCCCCcceecCCCCCCCCCCCccccCCCC
Q psy9783         192 YFKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEG-QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPS  267 (726)
Q Consensus       192 ~~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G-~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~  267 (726)
                      -++++|+||.|+ .+.+..+.+-...-.+-.  .+|.+.|.++.- .+.-.......+...++-.+....|.+-|-..|.
T Consensus       386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~  465 (708)
T PRK11154        386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAK  465 (708)
T ss_pred             HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCC
Confidence            368999999984 566666665555444433  366666665321 1111112223466666665666678888888888


Q ss_pred             CcchhhhhHhHHhHH
Q psy9783         268 EPIHCIVWAKHLFNY  282 (726)
Q Consensus       268 ~~~h~i~~a~~lf~~  282 (726)
                      +....+.++..+...
T Consensus       466 Ts~~~~~~~~~~~~~  480 (708)
T PRK11154        466 TSAETIATTVALAKK  480 (708)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888888776654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=82.86  E-value=1.7  Score=44.58  Aligned_cols=35  Identities=29%  Similarity=0.496  Sum_probs=29.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~   43 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD   43 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            5678999998 59999999999999997 57777653

>PLN02602 lactate dehydrogenase

Probab=82.76  E-value=1.6  Score=48.66  Aligned_cols=32  Identities=28%  Similarity=0.646  Sum_probs=29.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      .||.|||+|.+|+.+|-.|+..|+. +|.|+|-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi   70 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV   70 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            6999999999999999999999984 7999985

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=82.58  E-value=9.2  Score=43.94  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=40.8

Q ss_pred             hCCCCeEEEEecccccccccccccccccEEEEc--cCcHHHHHHHHHHhhhcCCcEEEEccCCccceE
Q psy9783         170 FNPDANIVAHHTSIISADFGVNYFKQFTLVMNA--LDNRAARNHVNRMCLASEVPLIESGTAGYEGQV  235 (726)
Q Consensus       170 ~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~a--lDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v  235 (726)
                      ..++++|++..++       .+-++++|+|+++  ++..++|..--+.+.+||+  +-..|.|.+|..
T Consensus        56 ~g~~~~v~~Ttdr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~  114 (437)
T cd05298          56 NYPEIKFVYTTDP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA  114 (437)
T ss_pred             hCCCeEEEEECCH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence            3345556555443       2447889999987  5678899999999999996  544677777743

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=82.57  E-value=1.6  Score=46.68  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=27.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~   33 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARD   33 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            379999999999999999999986 47888754

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=82.37  E-value=1.7  Score=47.19  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||.|||+|-+|+.+|-.|+..|.+++.++|-
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            58999999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=82.35  E-value=1.6  Score=42.61  Aligned_cols=32  Identities=25%  Similarity=0.588  Sum_probs=25.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.+||+|..|+.++++|+..|+. +++.|.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccc
Confidence            4799999999999999999999964 7787743

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=82.25  E-value=1.6  Score=50.37  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.+++++|+|+||+|..+++.|+..|+ +++++|
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~  362 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN  362 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            467899999999999999999999998 788876

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=82.23  E-value=1.8  Score=43.24  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+++++++|+|+ |++|..+++.|+..| .++++++.
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R   60 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGR   60 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC
Confidence            356789999996 999999999999988 48888764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=82.22  E-value=9.5  Score=39.80  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=25.3

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          21 KVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        21 kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      +|+|.|+ |.||.++++.|+..|- .+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899985 9999999999999884 46777653

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=82.05  E-value=3.3  Score=44.58  Aligned_cols=63  Identities=17%  Similarity=0.334  Sum_probs=36.5

Q ss_pred             hhCCCCeEEEEecccccccccccccc-cccEEEEc---cCcHHHHHHHHHHhhhcCCcE-EEEc-cCCcc
Q psy9783         169 NFNPDANIVAHHTSIISADFGVNYFK-QFTLVMNA---LDNRAARNHVNRMCLASEVPL-IESG-TAGYE  232 (726)
Q Consensus       169 ~~np~~~i~~~~~~i~~~~~~~~~~~-~~DlVi~a---lDn~~aR~~in~~c~~~~iPl-I~sg-~~G~~  232 (726)
                      ...||+-+++-+..... ++...+++ +.|+++..   +-+..-+..+-+.|.+.+.-+ |-+| ..|+.
T Consensus        60 ~~~~DlVVE~A~~~av~-e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD  128 (267)
T PRK13301         60 AWRPDLVVEAAGQQAIA-EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD  128 (267)
T ss_pred             hcCCCEEEECCCHHHHH-HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence            34455555443333221 34455665 78998865   445567888888898877554 4444 33443

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=82.05  E-value=1.8  Score=47.32  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ..|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            479999999999999999999997 6999997654

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=81.84  E-value=9.9  Score=43.41  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=28.3

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..||+|.| .|-||+++++.|...|. +++++|.+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            346899998 69999999999999985 67778754

>PRK06194 hypothetical protein; Provisional

Probab=81.67  E-value=1.9  Score=45.02  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|||.| +||||.++++.|+..|. +++++|.+
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~   39 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ   39 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4567899998 68999999999999996 58887753

>PRK06487 glycerate dehydrogenase; Provisional

Probab=81.63  E-value=1.6  Score=47.77  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||.++++.|...|. ++..+|.
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~  179 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQL  179 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            5899999999999999999999987776 4666553

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=81.58  E-value=1.7  Score=51.82  Aligned_cols=33  Identities=21%  Similarity=0.453  Sum_probs=30.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..|+|||+|-+||.+|-.|++.|. +++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            589999999999999999999997 599999874

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=81.54  E-value=2  Score=46.68  Aligned_cols=34  Identities=18%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      .|+|||+|-+|+.+|-.|++.|. +++|+|.+.+-
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            58999999999999999999996 59999988763

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=81.42  E-value=1.9  Score=44.22  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=29.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~   39 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIK   39 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCC
Confidence            5577899998 59999999999999996 57777644

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=81.38  E-value=2.9  Score=47.63  Aligned_cols=58  Identities=16%  Similarity=0.090  Sum_probs=38.2

Q ss_pred             hhCCCCeEEEEecccccccccccccccccEEEEc--cCcHHHHHHHHHHhhhcCCcEEEEccCCccceE
Q psy9783         169 NFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA--LDNRAARNHVNRMCLASEVPLIESGTAGYEGQV  235 (726)
Q Consensus       169 ~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~a--lDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v  235 (726)
                      ...++++|++..+.       .+-+.++|+||++  +...++|..-.+....+|+--  ..|.|.+|..
T Consensus        56 ~~~~~~~v~~t~d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g--qET~G~GG~~  115 (419)
T cd05296          56 KAGLPIKVHLTTDR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVIG--QETTGAGGFA  115 (419)
T ss_pred             hhCCCeEEEEeCCH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc--ccCCCcchHH
Confidence            33445555544332       2447788999987  455678888888888888753  5677777743

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PLN00106 malate dehydrogenase

Probab=81.33  E-value=2.1  Score=47.14  Aligned_cols=36  Identities=33%  Similarity=0.498  Sum_probs=31.4

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy9783          18 KKSKVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDLDT   53 (726)
Q Consensus        18 ~~~kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~D~   53 (726)
                      ...||+|+|+ |.+|+.++-.|+..|. ++|.++|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3468999999 9999999999999888 4799999755

>PLN02494 adenosylhomocysteinase

Probab=81.20  E-value=1.9  Score=49.83  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      |.+++|+|+|+|.||..+++.+...|. ++.++|.|..
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~  288 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI  288 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            567899999999999999999999998 6888887643

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=81.12  E-value=7.2  Score=47.27  Aligned_cols=92  Identities=11%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             ccccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccce-EEEEeCCCCcceecCCCCCCCCCCCccccCCCC
Q psy9783         192 YFKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEGQ-VELIKKGETKCYECDPKPAAKTYPGCTIRNTPS  267 (726)
Q Consensus       192 ~~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G~-v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~  267 (726)
                      -++++|+||.|+ .+.+....+-.....+-.  .+|.+-|.++.=. +.-.......+...++-.++...|.+-|-..+.
T Consensus       381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~  460 (699)
T TIGR02440       381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAG  460 (699)
T ss_pred             HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCC
Confidence            368999999984 566655554444433322  3566666654211 111112223466666665666678888888888


Q ss_pred             CcchhhhhHhHHhHHH
Q psy9783         268 EPIHCIVWAKHLFNYL  283 (726)
Q Consensus       268 ~~~h~i~~a~~lf~~l  283 (726)
                      +...++.++..++..+
T Consensus       461 T~~~~~~~~~~~~~~~  476 (699)
T TIGR02440       461 TSEQTIATTVALAKKQ  476 (699)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            8888999988776653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=81.10  E-value=1.9  Score=50.43  Aligned_cols=36  Identities=22%  Similarity=0.559  Sum_probs=31.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|...+-
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            3579999999999999999999997 69999986553

>PRK06185 hypothetical protein; Provisional

Probab=81.09  E-value=2  Score=47.45  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+..|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            45689999999999999999999997 589999763

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=81.08  E-value=2  Score=45.71  Aligned_cols=31  Identities=32%  Similarity=0.288  Sum_probs=27.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.|||+|.+|..+++.|...|. ++.++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999986 68888863

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=81.07  E-value=1.8  Score=48.72  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+. +...|.
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            57889999999999999999999999974 666674

>PRK06436 glycerate dehydrogenase; Provisional

Probab=81.04  E-value=1.8  Score=47.21  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..|.+++|.|||.|.||.++++.|...|+ ++..+|..
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            46889999999999999999998877776 57777753

>PRK12828 short chain dehydrogenase; Provisional

Probab=80.96  E-value=1.7  Score=43.41  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|.| .|+||..+++.|+..|.. +.++|.+
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~   40 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG   40 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence            5678999998 599999999999999975 8888764

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=80.93  E-value=2  Score=49.71  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=33.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      .|..++|+|||+|.||..+++.|...|. +++++|.|..
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~  288 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPI  288 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            4788999999999999999999999998 6888876643

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=80.92  E-value=2.1  Score=43.69  Aligned_cols=37  Identities=30%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+.+++|+|.| .|+||..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~   45 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT   45 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence            456788899997 78899999999999987 77888764

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=80.85  E-value=1.9  Score=47.22  Aligned_cols=33  Identities=42%  Similarity=0.619  Sum_probs=29.4

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q psy9783          21 KVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDLDT   53 (726)
Q Consensus        21 kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~D~   53 (726)
                      ||.|||+ |.+|+.++-.|+..|+ .+|.|+|-+.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6999999 9999999999999998 5799998653

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK07774 short chain dehydrogenase; Provisional

Probab=80.73  E-value=2.3  Score=43.17  Aligned_cols=35  Identities=29%  Similarity=0.555  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~   39 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN   39 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56688999996 9999999999999995 57777643

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=80.73  E-value=2.2  Score=44.10  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=29.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      .|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999998 5899997753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=80.70  E-value=9.8  Score=42.59  Aligned_cols=34  Identities=44%  Similarity=0.630  Sum_probs=27.3

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...+|+|+|+ |.||..+++.|+..|. ++.+++.+
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~   93 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVARE   93 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEec
Confidence            3468999985 9999999999999995 57666643

>PRK07060 short chain dehydrogenase; Provisional

Probab=80.68  E-value=2.3  Score=42.99  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r   41 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR   41 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999997 8999999999999997 5888774

>TIGR00936 ahcY adenosylhomocysteinase

Probab=80.65  E-value=2  Score=48.87  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +..++|+|+|+|.+|.-+++.+..+|. ++.++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            578899999999999999999999998 588888664

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=80.65  E-value=1.9  Score=48.51  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+. +...|.
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            47899999999999999999999988874 666664

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=80.63  E-value=1.8  Score=48.26  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcccchhhh--ccCCCCCCccccccccCCCCCCCCCCCCCC
Q psy9783         507 PAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL--RKKPNHRDQMIVPEKYLTAPNPTCPVCSPK  570 (726)
Q Consensus       507 PAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~fl--nl~pn~~~~~~vP~~~~~ePnp~C~vC~~~  570 (726)
                      +-+.+|+++|++++++|++|+|.|.-+...+.++  ++..+.     .-.+. -.++|.|.+|+..
T Consensus       300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~-----~~~~~-~~~~~~C~~C~~~  359 (376)
T PRK08762        300 GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMR-----FRELR-LPPDPHCPVCAPG  359 (376)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCe-----EEEEe-ccCCCCCCCCCCC
Confidence            3567799999999999999999984322222222  322111     11112 2468999999763

>PRK07574 formate dehydrogenase; Provisional

Probab=80.47  E-value=1.9  Score=48.67  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|..++|.|||+|.||.++++.|...|+ ++..+|.
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr  223 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR  223 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence            5889999999999999999999998887 4667663

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=80.46  E-value=2.7  Score=47.56  Aligned_cols=42  Identities=29%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCccCccCCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTIDVSNLN   60 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~Ie~sNLn   60 (726)
                      +..||.|+|+|.||-.+++.|...++.  +|..| +|.-+...+.
T Consensus        59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaI-Nd~~~~~~~a  102 (395)
T PLN03096         59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAI-NDTGGVKQAS  102 (395)
T ss_pred             cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEE-cCCCCHHHHH
Confidence            346999999999999999999876544  44444 2444444443

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=80.42  E-value=1.2  Score=49.65  Aligned_cols=46  Identities=28%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             CcEEEEcCchHHH-HHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCC
Q psy9783          20 SKVLVVGAGGIGC-ELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFH   66 (726)
Q Consensus        20 ~kVlvVGaGgiGc-eiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~   66 (726)
                      .||+++|+|++|+ .+...|..+| -.|+++|.+.--..-|++|-+|+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g-~~V~~vd~~~~~v~aL~~qglY~   47 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNG-FEVTFVDVNQELIDALNKRKSYQ   47 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCC-CeEEEEECCHHHHHHHhcCCCeE
Confidence            4799999999998 6688899999 45999997554567788887774

>PRK09126 hypothetical protein; Provisional

Probab=80.32  E-value=2  Score=47.15  Aligned_cols=36  Identities=28%  Similarity=0.559  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      .+..|+|||+|..|+.+|-.|++.|+. ++|+|....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            356899999999999999999999985 888887653

>cd00704 MDH Malate dehydrogenase

Probab=80.32  E-value=2.1  Score=47.03  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=29.2

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCe------EEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSN------IEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~------i~iiD~D   52 (726)
                      .||+|+|| |.+|+.++..|+..|+-.      |.|+|.+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            48999999 999999999999988754      9999864

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=80.25  E-value=2.3  Score=45.91  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|.|+|+|.+|+.+++.|+..|. +++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4689999999999999999999995 68888865

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=80.20  E-value=2.3  Score=46.00  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhC-CCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSG-FSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~G-v~~i~iiD~D   52 (726)
                      +.+++|||.| +|+||.++++.|+..| ..+++++|.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~   39 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD   39 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            3567899998 5999999999999987 4578888754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=80.13  E-value=2.8  Score=50.02  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=30.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +.+|+|+|+|.+|..+++.|...|+ .++++|.|.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~  433 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDP  433 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCH
Confidence            4689999999999999999999997 589999885

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=80.11  E-value=2  Score=46.24  Aligned_cols=31  Identities=26%  Similarity=0.613  Sum_probs=28.2

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.|||+|.+|+-++-.|++.|..+++++|-|
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999887699999976

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=80.07  E-value=2.1  Score=41.69  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=27.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ||.|+|+|..|+.+|..|+..| .++++...|.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence            6999999999999999999999 6677766543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02028 ChlP geranylgeranyl reductase

Probab=80.05  E-value=2  Score=47.94  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=28.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+|||+|..||..|..|++.|+. +.|+|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            799999999999999999999975 8888854

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=80.04  E-value=2  Score=47.37  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ...|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            45799999999999999999999986 99999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	726
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		5e-72
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		1e-63
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		2e-71
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		2e-63
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		6e-71
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		1e-63
2px9_A	217	The Intrinsic Affinity Between E2 And The Cys Domai		6e-34
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-33
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-28
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		2e-28
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-28
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		2e-28
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		1e-27
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		3e-27
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		3e-27
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		3e-27
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		8e-25
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		4e-06
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		2e-11
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		1e-07
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		3e-09
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		3e-09
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		3e-08
3h5n_A	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		3e-08
3guc_A	292	Human Ubiquitin-Activating Enzyme 5 In Complex With		1e-07
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		2e-07
3vh1_A	598	Crystal Structure Of Saccharomyces Cerevisiae Atg7		3e-07
3vh2_A	616	Crystal Structure Of Saccharomyces Cerevisiae Atg7		3e-07
4gsk_A	615	Crystal Structure Of An Atg7-Atg10 Crosslinked Comp		3e-07
4gsl_A	615	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		3e-07
3vh3_A	340	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		3e-07
3t7e_A	344	Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E		3e-07
3rui_A	340	Crystal Structure Of Atg7c-Atg8 Complex Length = 34		3e-07
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-04
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-04
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		2e-04
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		2e-04
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		2e-04

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score =  268 bits (686), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 142/273 (52%), Positives = 165/273 (60%), Gaps = 85/273 (31%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN          
Sbjct: 29  RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 78
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 79  ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 108
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           IVA+H SI+                               NPD N              V
Sbjct: 109 IVAYHDSIM-------------------------------NPDYN--------------V 123
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
            +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+CYEC P
Sbjct: 124 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 183
Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           KP  +T+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 184 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL 216

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 175/296 (59%), Gaps = 15/296 (5%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
           +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W      V
Sbjct: 252 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----V 307
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
               +ET+          GLKDQ+V  V   AR+F +S+  L+    A       L+WDK
Sbjct: 308 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDK 366
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVL 528
           DD  AMDFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L
Sbjct: 367 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 426
Query: 529 QARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFE 588
             +   C+T++L K+PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   +
Sbjct: 427 SGKIDQCRTIFLNKQPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQ 485
Query: 589 EAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
           + ++K+   M A    +               TEANN K L E G+    R+ A D
Sbjct: 486 DKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 541

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score =  267 bits (682), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/273 (52%), Positives = 165/273 (60%), Gaps = 85/273 (31%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN          
Sbjct: 11  RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 60
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 61  ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 90
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           IVA+H SI+                               NPD N              V
Sbjct: 91  IVAYHDSIM-------------------------------NPDYN--------------V 105
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
            +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+CYEC P
Sbjct: 106 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 165
Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           KP  +T+PGCTIRNTPSEPIHCIVWAK+LFN L
Sbjct: 166 KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQL 198

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score =  240 bits (613), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 176/296 (59%), Gaps = 15/296 (5%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
           +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W      V
Sbjct: 234 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----V 289
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
               +ET+          GLKDQ+V  V   AR+F +S+  L+       +  E L+WDK
Sbjct: 290 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAE-LIWDK 348
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVL 528
           DD  AMDFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L
Sbjct: 349 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 408
Query: 529 QARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFE 588
             +   C+T++L K+PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   +
Sbjct: 409 SGKIDQCRTIFLNKQPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQ 467
Query: 589 EAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
           + ++K+   M A    +               TEANN K L E G+    R+ A D
Sbjct: 468 DKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 523

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score =  265 bits (678), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/273 (51%), Positives = 164/273 (60%), Gaps = 85/273 (31%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLN          
Sbjct: 9   RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLN---------- 58
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF K+HVG+SKAQVA+ S L F P AN
Sbjct: 59  ------------------------------RQFLFQKKHVGRSKAQVAKESVLQFYPKAN 88
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           IVA+H SI+                               NPD N              V
Sbjct: 89  IVAYHDSIM-------------------------------NPDYN--------------V 103
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDP 250
            +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+CYEC P
Sbjct: 104 EFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHP 163
Query: 251 KPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYL 283
           KP  +T+PG TIRNTPSEPIHCIVWAK+LFN L
Sbjct: 164 KPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQL 196

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/296 (43%), Positives = 175/296 (59%), Gaps = 15/296 (5%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
           +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W      V
Sbjct: 232 DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAE----V 287
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
               +ET+          GLKDQ+V  V   AR+F +S+  L+    A       L+WDK
Sbjct: 288 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDK 346
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVL 528
           DD  AMDFV + AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L
Sbjct: 347 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKIL 406
Query: 529 QARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFE 588
             +   C+T++L K+PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   +
Sbjct: 407 SGKIDQCRTIFLNKQPNPRKKLLVP-CALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQ 465
Query: 589 EAVLKKTLNMSAMVDVMXXXXXXXXXXXXXXXTEANNDKPL-EHGLIISHRVSARD 643
           + ++K+   M A    +               TEANN K L E G+    R+ A D
Sbjct: 466 DKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADD 521

>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1 In Ubiquitin-Like Modifications Length = 217

Iteration: 1
 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 94/156 (60%), Gaps = 13/156 (8%)
Query: 357 NGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSDAV 416
           +GD+ R ST+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W      V
Sbjct: 67  DGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDW----AEV 122
Query: 417 AGSSKETDGG--------GLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDK 468
               +ET+          GLKDQ+V  V   AR+F +S+  L+    A       L+WDK
Sbjct: 123 QSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDK 181
Query: 469 DDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGN 504
           DD  AMDFV + AN+R H+FS+  KSRFDIKSMAGN
Sbjct: 182 DDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGN 217

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 143/584 (24%), Positives = 223/584 (38%), Gaps = 180/584 (30%)
Query: 7   GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFS-----NIEIVDLDTIDVSNLNR 61
            VF  + ++ I      +VGAG IGCE+LKN  + G +     +I + D+D+I+ SNLN 
Sbjct: 404 AVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLN- 462
Query: 62  QFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNS 121
                                                  RQFLF  + VGK K++ A  +
Sbjct: 463 ---------------------------------------RQFLFRPRDVGKLKSECASTA 483
Query: 122 ALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 181
               NP                L  +   +++ VG     +                   
Sbjct: 484 VSIMNP---------------SLTGKITSYQERVGPESEGI------------------- 509
Query: 182 SIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG 241
                 FG  +F++ +LV NALDN  AR +V+R C+  E PL+ESGT G +G  +++   
Sbjct: 510 ------FGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVPH 563
Query: 242 ETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKL 301
            T+ Y     P  K++P CT++N P+   H I WA+ LF  L +            I  +
Sbjct: 564 LTESYGSSQDPPEKSFPICTLKNFPNRIEHTIAWARDLFEGLFK----------QPIDNV 613
Query: 302 LERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICXXXXXXXXXXXXXXXNGDVV 361
              LS+ N + + L              NP  VL  +                    D +
Sbjct: 614 NMYLSSPNFLETSLKT----------SSNPREVLENIR-------------------DYL 644
Query: 362 RTSTRAWASACGYDPRKLFAKFFDADIRYLI----------SMSDLWK-TRKAPQPLVWD 410
            T        C    R  F KFF+ +I+ L+          +    W   ++AP PL +D
Sbjct: 645 VTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFD 704
Query: 411 T-----LSDAVAGSSKETDGGGLKDQRVWSVAECARVF--------------ERSVRELK 451
                     VA +S      GLK +   ++ E  RV               +  V E +
Sbjct: 705 IHNREHFDFIVAAASLYAFNYGLKSETDPAIYE--RVLAGYNPPPFAPKSGIKIQVNENE 762
Query: 452 TKFDAAVEKDEHLV----------------------WDKDDKPA--MDFVAACANIRAHV 487
              + A  KD+  +                      ++KDD     +DF+ A +N+RA  
Sbjct: 763 EAPETAANKDKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMN 822
Query: 488 FSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQAR 531
           + I    RF  K +AG I+PA+ TS A+V+GLV L  + ++  +
Sbjct: 823 YDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGK 866

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 403 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 452
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 453 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 482
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 483 VVPHFNKI-----------------------------------------------QDFND 495
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 496 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 555
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P CTI + P  P HCI + + L  + +     +  PL  
Sbjct: 556 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 614
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 615 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 647

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 42  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 91
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 92  ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 121
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 122 VVPHFNKI-----------------------------------------------QDFND 134
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 135 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 194
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P CTI + P  P HCI + + L  + +     +  PL  
Sbjct: 195 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 253
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 254 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 286

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 61  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 110
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 111 ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 140
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 141 VVPHFNKI-----------------------------------------------QDFND 153
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 154 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 213
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P CTI + P  P HCI + + L  + +     +  PL  
Sbjct: 214 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 272
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 273 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 305

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 82  ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P CTI + P  P HCI + + L  + +     +  PL  
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 136/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 82  ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G  ++I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAQVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P  TI + P  P HCI + + L  + +     +  PL  
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 29  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 78
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 79  ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 108
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 109 VVPHFNKI-----------------------------------------------QDFND 121
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 122 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 181
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P  TI + P  P HCI + + L  + +     +  PL  
Sbjct: 182 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 240
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 241 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 273

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 82  ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P  TI + P  P HCI + + L  + +     +  PL  
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 135/334 (40%), Gaps = 111/334 (33%)
Query: 11  KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHV 70
           + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLN          
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN---------- 81
Query: 71  GKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN 130
                                         RQFLF  + +G+ KA+VA     +  P+ N
Sbjct: 82  ------------------------------RQFLFRPKDIGRPKAEVAAEFLNDRVPNCN 111
Query: 131 IVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGV 190
           +V H   I                                                DF  
Sbjct: 112 VVPHFNKI-----------------------------------------------QDFND 124
Query: 191 NYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI 238
            +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I
Sbjct: 125 TFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAAVI 184
Query: 239 KKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPL-- 294
             G T C EC  +  P    +P  TI + P  P HCI + + L  + +     +  PL  
Sbjct: 185 LPGMTACIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDG 243
Query: 295 ------ILKIQKLLERLSAMNVIRSQLPKLIQAV 322
                     QK LER S  N IR    +L Q V
Sbjct: 244 DDPEHIQWIFQKSLERASQYN-IRGVTYRLTQGV 276

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score =  112 bits (280), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 117/278 (42%), Gaps = 85/278 (30%)
Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSN-----IEIVDLDTIDVSNLNRQ 62
           VF  D +  I  SKV +VG+G IGCE+LKN  L G  +     I + D D+I+ SNLN  
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN-- 471
Query: 63  FLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSA 122
                                                 RQFLF  + VGK+K++VA  + 
Sbjct: 472 --------------------------------------RQFLFRPKDVGKNKSEVAAEAV 493
Query: 123 LNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTS 182
              NPD                           GK  A++ +            V   T 
Sbjct: 494 CAMNPDLK-------------------------GKINAKIDK------------VGPETE 516
Query: 183 IISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGE 242
            I   F  ++++    V NALDN  AR +V+R C+    PL+ESGT G +G  ++I    
Sbjct: 517 EI---FNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRL 573
Query: 243 TKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLF 280
           T+ Y     P  K+ P CT+R+ P++  H I WAK LF
Sbjct: 574 TESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLF 611

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 467 DKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIH 526
           D D    ++F+ AC+N RA  + I    R   K +AG IIPAIAT+ ++V GLV L    
Sbjct: 815 DDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYK 874
Query: 527 VLQAR 531
           ++  +
Sbjct: 875 LIDNK 879

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 9  FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ 68
          F+ D ++ +K S+VL+VG GG+GC   + L  +G  N+ ++D DT+ +SNL RQ L    
Sbjct: 21 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDA 80
Query: 69 HVGKSKAQVARNSALNFNP 87
           VG+ K + AR++    NP
Sbjct: 81 TVGQPKVESARDALTRINP 99

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 143 HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNA 202
           +L RQ L     VG+ K + AR++    NP   I   +  +  A+       +  LV++ 
Sbjct: 70  NLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAA-LIAEHDLVLDC 128
Query: 203 LDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI--KKGETKCYEC 248
            DN A RN +N  C A++VPL+       EGQ+ +   + GE  CY C
Sbjct: 129 TDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGE-PCYRC 175

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTL 198
           +   +L RQ LF  + + + K+QV++      NPD  + A    +       +   +  +
Sbjct: 63  VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALK-DAVARADV 121
Query: 199 VMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVE-LIKKGETKCYEC 248
           V++  DN A R  +N  C+A   PLI +   G+ GQ+  L    E  CY C
Sbjct: 122 VLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRC 172

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTL 198
           +   +L RQ LF  + + + K+QV++      NPD  + A    +       +   +  +
Sbjct: 65  VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALK-DAVARADV 123
Query: 199 VMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVE-LIKKGETKCYEC 248
           V++  DN A R  +N  C+A   PLI +   G+ GQ+  L    E  CY C
Sbjct: 124 VLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRC 174

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 13  LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK 72
           ++D +K +KV+++G GGIG  +   L  SG   I ++D D I+ +NL RQ LF +  VGK
Sbjct: 109 VQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGK 168
Query: 73  SKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHK 107
           +K +V +   L  N + ++  ++  ++N     HK
Sbjct: 169 NKTEVIKRELLKRNSEISV-SEIALNINDYTDLHK 202

>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 13  LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGK 72
           ++D +K +KV+++G GGIG  +   L  SG   I ++D D I+ +NL RQ LF +  VGK
Sbjct: 112 VQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGK 171
Query: 73  SKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHK 107
           +K +V +   L  N + ++  ++  ++N     HK
Sbjct: 172 NKTEVIKRELLKRNSEISV-SEIALNINDYTDLHK 205

>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp Length = 292

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 139 IRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIS-----------AD 187
           +   ++NR F F     G SK Q A ++  N NPD     H+ +I +           ++
Sbjct: 71  VELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISN 129
Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTA--GYEGQVELIKKGETKC 245
            G+   K   LV++ +DN  AR  +N  C       +ESG +     G ++LI  GE+ C
Sbjct: 130 GGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESAC 189
Query: 246 YECDP 250
           + C P
Sbjct: 190 FACAP 194

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           ++ S+VL+VG  G+G E+ KNL+L+G   + ++D + +   +   QFL     VG+++A+
Sbjct: 34  LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAE 93
Query: 77  VARNSALNFNPDANI 91
            +   A N NP  ++
Sbjct: 94  ASLERAQNLNPMVDV 108

>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595) Length = 598

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 382
Query: 75  AQVARNS 81
           A++A  S
Sbjct: 383 AELAAAS 389

>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613) Length = 616

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 382
Query: 75  AQVARNS 81
           A++A  S
Sbjct: 383 AELAAAS 389

>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex Length = 615

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPK 381
Query: 75  AQVARNS 81
           A++A  S
Sbjct: 382 AELAAAS 388

>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 615

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 381
Query: 75  AQVARNS 81
           A++A  S
Sbjct: 382 AELAAAS 388

>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 30  DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 89
Query: 75  AQVARNSALNFNP 87
           A++A  S     P
Sbjct: 90  AELAAASLKRIFP 102

>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2 Architecture And Mechanism In The Autophagy Pathway Length = 344

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 34  DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 93
Query: 75  AQVARNSALNFNP 87
           A++A  S     P
Sbjct: 94  AELAAASLKRIFP 106

>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
          D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 89
Query: 75 AQVARNS 81
          A++A  S
Sbjct: 90 AELAAAS 96

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14  EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
           ++ ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F   +  +GK+
Sbjct: 25  QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 84
Query: 74  KAQVARNSALNFNPDAN 90
           +A+ A       N D +
Sbjct: 85  RAEAAMEFLQELNSDVS 101

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14  EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
           ++ ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F   +  +GK+
Sbjct: 25  QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 84
Query: 74  KAQVARNSALNFNPDAN 90
           +A+ A       N D +
Sbjct: 85  RAEAAMEFLQELNSDVS 101

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14  EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
           ++ ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F   +  +GK+
Sbjct: 27  QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86
Query: 74  KAQVARNSALNFNPDAN 90
           +A+ A       N D +
Sbjct: 87  RAEAAMEFLQELNSDVS 103

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14  EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
           ++ ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F   +  +GK+
Sbjct: 27  QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86
Query: 74  KAQVARNSALNFNPDAN 90
           +A+ A       N D +
Sbjct: 87  RAEAAMEFLQELNSDVS 103

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14  EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKS 73
           ++ ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F   +  +GK+
Sbjct: 28  QEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 87
Query: 74  KAQVARNSALNFNPDAN 90
           +A+ A       N D +
Sbjct: 88  RAEAAMEFLQELNSDVS 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	726
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	1e-167
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	3e-84
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-35
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	1e-75
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	3e-31
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	5e-75
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	4e-27
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	2e-38
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	2e-29
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	8e-28
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	4e-25
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-24
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-22
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	5e-22
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	1e-20
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	3e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  495 bits (1276), Expect = e-167
 Identities = 296/757 (39%), Positives = 391/757 (51%), Gaps = 172/757 (22%)

Query: 5   IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFL 64
           +     ++L + +   +VLVVGAGGIGCELLKNLVL+GFS+I+++DLDTIDVSNLNRQFL
Sbjct: 3   LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFL 62

Query: 65  FHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALN 124
                                                                       
Sbjct: 62  ------------------------------------------------------------ 62

Query: 125 FNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSII 184
                                    F K+HVG+SKAQVA+ S L F P ANIVA+H SI+
Sbjct: 63  -------------------------FQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIM 97

Query: 185 SADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETK 244
           + D+ V +F+QF LVMNALDNRAARNHVNRMCLA++VPLIESGTAGY GQV  IKKG T+
Sbjct: 98  NPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTE 157

Query: 245 CYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLER 304
           CYEC PKP  +T+PG TIRNTPSEPIHCIVWAK+LFN L                     
Sbjct: 158 CYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQL--------------------- 196

Query: 305 LSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTS 364
                       +     ++   R +P               A+A A  +  +GD+ R S
Sbjct: 197 ----------FGEEDADQEVSPDRADPEAAWEPTE-------AEARARASNEDGDIKRIS 239

Query: 365 TRAWASACGYDPRKLFAKFFDADIRYLISMSDLWKTRKAPQPLVWDTLSD----AVAGSS 420
           T+ WA + GYDP KLF K F  DIRYL++M  LW+ RK P PL W  +        A   
Sbjct: 240 TKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETNASDQ 299

Query: 421 KETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAAC 480
           +     GLKDQ+V  V   AR+F +S+  L+    A       L+WDKDD  AMDFV + 
Sbjct: 300 QNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHL-AEKGDGAELIWDKDDPSAMDFVTSA 358

Query: 481 ANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYL 540
           AN+R H+FS+  KSRFDIKSMAGNIIPAIAT+NA++AGL+VL  + +L  +   C+T++L
Sbjct: 359 ANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFL 418

Query: 541 RKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSA 600
            K+PN R +++VP   L  PNP C VC+ KP+ T+ L+V K+TV   ++ ++K+   M A
Sbjct: 419 NKQPNPRKKLLVPCA-LDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVA 477

Query: 601 MVDVMVEASGSVIISSEEGETEANNDKPL-----EHG---------------LIISHRVS 640
               + +  G+++ISSEEGETEANN K L      +G               + I H   
Sbjct: 478 PDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSED 537

Query: 641 ARDGPEFEIL-DQKDLPQPPAPDAAASTTDAAEEKM---------------------ETN 678
                EFE++ D  +   P   + AA +     +                       E +
Sbjct: 538 LGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDS 597

Query: 679 GNGNGDVGTPDSKKRKVDSSDESLPAKKVRTDEKSTD 715
            N         S+KRK+D   E+L AK+ R ++K   
Sbjct: 598 SNNADVSEEERSRKRKLD-EKENLSAKRSRIEQKEEL 633

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  286 bits (733), Expect = 3e-84
 Identities = 138/688 (20%), Positives = 224/688 (32%), Gaps = 194/688 (28%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIE-----IVDLDTIDVSNLNRQ 62
           VF  D +  I  SKV +VG+G IGCE+LKN  L G  +       + D D+I+ SNLNRQ
Sbjct: 414 VFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQ 473

Query: 63  FLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSA 122
           FLF                                          + VGK+K++VA  + 
Sbjct: 474 FLFRP----------------------------------------KDVGKNKSEVAAEAV 493

Query: 123 LNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTS 182
              NPD     +                                          +     
Sbjct: 494 CAMNPDLKGKINA----------------------------------------KIDKVGP 513

Query: 183 IISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGE 242
                F  ++++    V NALDN  AR +V+R C+    PL+ESGT G +G  ++I    
Sbjct: 514 ETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRL 573

Query: 243 TKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLL 302
           T+ Y     P  K+ P CT+R+ P++  H I WAK LF              + +   + 
Sbjct: 574 TESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVE 633

Query: 303 ERLSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVR 362
           + L     ++  L  +  ++                                        
Sbjct: 634 QTLKQSGDVKGVLESISDSL---------------------------------------- 653

Query: 363 TSTRAWASACGYDPRKLFAKFFDADIRYLI----------SMSDLWK-TRKAPQPLVWDT 411
           +S       C    R  F K F+ DI+ L+          +    W   ++AP PL +D 
Sbjct: 654 SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDI 713

Query: 412 --------------LSDAVAGSSKETDGGGLKDQRVWSVAECARVFERS--------VRE 449
                         L     G   +            SV +   + E +        V +
Sbjct: 714 YNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVND 773

Query: 450 LKTKFDAAVEKDE------------------------HLVWDKDDKPAMDFVAACANIRA 485
                +A                                  D D    ++F+ AC+N RA
Sbjct: 774 DDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRA 833

Query: 486 HVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPN 545
             + I    R   K +AG IIPAIAT+ ++V GLV L    ++  +    Q  Y     N
Sbjct: 834 QNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQ--YKNGFVN 891

Query: 546 HRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTK-MTVAEFEEAVLKKT-LNMSAMVD 603
                    + + +P           +     D+   + +++  E   K   L ++    
Sbjct: 892 LALPFFGFSEPIASPKGEYNNKK-YDKIWDRFDIKGDIKLSDLIEHFEKDEGLEIT---- 946

Query: 604 VMVEASGSVIISS--EEGETEANNDKPL 629
            M+    S++ +S     + +   + P+
Sbjct: 947 -MLSYGVSLLYASFFPPKKLKERLNLPI 973

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  143 bits (362), Expect = 1e-35
 Identities = 38/274 (13%), Positives = 78/274 (28%), Gaps = 94/274 (34%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
           V  K+    ++ S VL++G  G+G E+ KN+VL+G  ++ + D + + +++L+ QF   +
Sbjct: 16  VLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTE 75

Query: 68  QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
                                                   + +G+ +  V R      N 
Sbjct: 76  ----------------------------------------KDIGQKRGDVTRAKLAELNA 95

Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
                                                                 +++ + 
Sbjct: 96  Y--------------------------------------------------VPVNVLDSL 105

Query: 188 FGVNYFKQFTLV-MNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCY 246
             V    QF +V      +   +  +N  C +S +  I S T G  G   +    E    
Sbjct: 106 DDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVL 165

Query: 247 ECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLF 280
           +   +   +T     I       +  +   +H  
Sbjct: 166 DPTGEE-PRTGMVSDIEPDG--TVTMLDDNRHGL 196

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score =  259 bits (663), Expect = 1e-75
 Identities = 85/294 (28%), Positives = 120/294 (40%), Gaps = 101/294 (34%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
              + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLNRQFL   
Sbjct: 400 PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFL--- 456

Query: 68  QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
                                                F  + +G+ KA+VA     +  P
Sbjct: 457 -------------------------------------FRPKDIGRPKAEVAAEFLNDRVP 479

Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
           + N+V H   I                                                D
Sbjct: 480 NCNVVPHFNKI-----------------------------------------------QD 492

Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQV 235
           F   +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G  
Sbjct: 493 FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA 552

Query: 236 ELIKKGETKCYEC--DPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLM 287
            +I  G T C EC  +  P    +P CTI + P  P HCI + + L    E+  
Sbjct: 553 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPF 606

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score =  129 bits (326), Expect = 3e-31
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 461 DEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLV 520
            E +  D DD   + ++   +  RA  ++I   +    + +   IIPA+A++NA++A + 
Sbjct: 607 GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVC 666

Query: 521 VLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVT 580
                 +  + +       +    +     +    +       CP CS  P + I     
Sbjct: 667 ATEVFKIATSAYIPLNNYLVFNDVD----GLYTYTFEAERKENCPACSQLP-QNIQFS-P 720

Query: 581 KMTVAEFEEAVLKKT-LNMSAMVDVMVEASGSV------IISSEEGETEANNDKPLE 630
              + E  + +     L M     +     G         ++S E  T  N  K L+
Sbjct: 721 SAKLQEVLDYLTNSASLQMK-SPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLK 776

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  247 bits (633), Expect = 5e-75
 Identities = 85/300 (28%), Positives = 120/300 (40%), Gaps = 101/300 (33%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
              + L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLNRQFL   
Sbjct: 29  PSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFL--- 85

Query: 68  QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
                                                F  + +G+ KA+VA     +  P
Sbjct: 86  -------------------------------------FRPKDIGRPKAEVAAEFLNDRVP 108

Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
           + N+V H   I                                                D
Sbjct: 109 NCNVVPHFNKI-----------------------------------------------QD 121

Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQV 235
           F   +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G  
Sbjct: 122 FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNA 181

Query: 236 ELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCP 293
            +I  G T C EC  +  P    +P CTI + P  P HCI + + L    E+        
Sbjct: 182 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPL 241

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  114 bits (286), Expect = 4e-27
 Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 461 DEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLV 520
            E +  D DD   + ++   +  RA  ++I   +    + +   IIPA+A++NA++A + 
Sbjct: 236 GEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVC 295

Query: 521 VLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVT 580
                 +  + +       +     +    +    +       CP CS  P + I     
Sbjct: 296 ATEVFKIATSAYIPLNNYLV----FNDVDGLYTYTFEAERKENCPACSQLP-QNIQFS-P 349

Query: 581 KMTVAEFEEAVLKKT-LNMSAM-VDVMVEASGSVI----ISSEEGETEANNDKPLE 630
              + E  + +     L M +  +   +E     +    ++S E  T  N  K L+
Sbjct: 350 SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLK 405

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  149 bits (377), Expect = 2e-38
 Identities = 44/304 (14%), Positives = 83/304 (27%), Gaps = 93/304 (30%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F   +         
Sbjct: 30  LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQR--------- 80

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                            +GK++A+ A       N D +      
Sbjct: 81  -------------------------------SSIGKNRAEAAMEFLQELNSDVSGSFVEE 109

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
           S    L                                            D   ++F +F
Sbjct: 110 SPENLL--------------------------------------------DNDPSFFCRF 125

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKT 256
           T+V+      +    +  +   S++PL+   T G  G + +I K                
Sbjct: 126 TVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNA---L 182

Query: 257 YPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLP 316
                 +  P    H   +        +        P I+ I K L +  +      ++P
Sbjct: 183 EDLRLDKPFPELREHFQSYDLDHMEKKDH----SHTPWIVIIAKYLAQWYSET--NGRIP 236

Query: 317 KLIQ 320
           K  +
Sbjct: 237 KTYK 240

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus} Length = 276

 Score =  117 bits (294), Expect = 2e-29
 Identities = 48/313 (15%), Positives = 88/313 (28%), Gaps = 89/313 (28%)

Query: 245 CYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLER 304
            +        K+ P CT++N P+   H + WA+  F                      + 
Sbjct: 2   GHHHHHHEFEKSIPICTLKNFPNAIEHTLQWARDEFE-----------------GLFKQP 44

Query: 305 LSAMNVIRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTS 364
              +N   +    + + ++L                    AG +           +V   
Sbjct: 45  AENVNQYLTDSKFVERTLRL--------------------AGTQPLEVLEAVQRSLVLQR 84

Query: 365 TRAWASACGYDPRKLFAKFFDADIRYLISM----------SDLWK-TRKAPQPLVWDT-- 411
            + W   C       +   +  +IR L+            +  W   ++ P PL +D   
Sbjct: 85  PQTWGD-CVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNN 143

Query: 412 ------------LSDAVAGSSKETDGGGLKD------QRVWSVAECARVF---------- 443
                       L     G +   D   +           ++     ++           
Sbjct: 144 TLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSAN 203

Query: 444 --------ERSVRELKTKFDAAVEKDEHLVWDKDD--KPAMDFVAACANIRAHVFSIPEK 493
                   E     L +       K   + ++KDD     MDF+ A +N+RA  + I   
Sbjct: 204 ASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPA 263

Query: 494 SRFDIKSMAGNII 506
            R   K +AG II
Sbjct: 264 DRHKSKLIAGKII 276

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  113 bits (284), Expect = 8e-28
 Identities = 48/249 (19%), Positives = 75/249 (30%), Gaps = 80/249 (32%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           I+   V +VG GG+G    + L   G   + + D D ++++N+NR               
Sbjct: 34  IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-------------- 79

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                       F     G SK Q A ++  N NPD     H+ 
Sbjct: 80  ---------------------------FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
           +I                                         H     ++ G+   K  
Sbjct: 113 NI----------------------------------TTVENFQHFMDRISNGGLEEGKPV 138

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESG--TAGYEGQVELIKKGETKCYEC---DPK 251
            LV++ +DN  AR  +N  C       +ESG       G ++LI  GE+ C+ C      
Sbjct: 139 DLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVV 198

Query: 252 PAAKTYPGC 260
            A       
Sbjct: 199 AANIDEKTL 207

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  106 bits (266), Expect = 4e-25
 Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 88/237 (37%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           ++ S+VL+VG  G+G E+ KNL+L+G   + ++D + +   +   QFL     VG+++  
Sbjct: 34  LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNR-- 91

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                                                 A+ +   A N NP  ++     
Sbjct: 92  --------------------------------------AEASLERAQNLNPMVDVKVDTE 113

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
            I                                                    ++F QF
Sbjct: 114 DI-----------------------------------------------EKKPESFFTQF 126

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPA 253
             V     +R     V+++C  + +        GY G       GE +  E   K A
Sbjct: 127 DAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYT-FANLGEHEFVEEKTKVA 182

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score =  104 bits (262), Expect = 1e-24
 Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 83/257 (32%)

Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 30  DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 89

Query: 75  AQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAH 134
           A                                        ++A  S     P  +    
Sbjct: 90  A----------------------------------------ELAAASLKRIFPLMDATGV 109

Query: 135 HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFK 194
             SI    H                                +V         D      K
Sbjct: 110 KLSIPMIGH-------------------------------KLVNEEAQHKDFDRLRALIK 138

Query: 195 QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQV-------ELIKKGETKCYE 247
           +  ++   +D+R +R   + +       +I +   G++  +       +     +  CY 
Sbjct: 139 EHDIIFLLVDSRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYF 197

Query: 248 C----DPKPAAKTYPGC 260
           C     P  +       
Sbjct: 198 CHDVVAPTDSLTDRTLD 214

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score =  101 bits (254), Expect = 1e-22
 Identities = 45/255 (17%), Positives = 76/255 (29%), Gaps = 81/255 (31%)

Query: 15  DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSK 74
           D+IK +KVL++GAG +GC + + L+  G   I  VD  T+  SN  RQ L++ +  GK K
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK 382

Query: 75  AQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAH 134
           A                                        ++A  S     P  +    
Sbjct: 383 A----------------------------------------ELAAASLKRIFPLMDATGV 402

Query: 135 HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFK 194
             SI    H                                +V         D      K
Sbjct: 403 KLSIPMIGH-------------------------------KLVNEEAQHKDFDRLRALIK 431

Query: 195 QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQV-------ELIKKGETKCYE 247
           +  ++   +D+R +R   + +       +I +   G++  +       +     +  CY 
Sbjct: 432 EHDIIFLLVDSRESRWLPSLLSNIENKTVI-NAALGFDSYLVMRHGNRDEQSSKQLGCYF 490

Query: 248 C-DPK-PAAKTYPGC 260
           C D   P        
Sbjct: 491 CHDVVAPTDSLTDRT 505

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 95/249 (38%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           +  S+VL++G GG+G      L  +G   + + D D + +SNL RQ LF  + + + K+Q
Sbjct: 26  LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQ 85

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
           V++                                       R + LN  PD  + A   
Sbjct: 86  VSQ--------------------------------------QRLTQLN--PDIQLTALQQ 105

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
                  L                               +                  + 
Sbjct: 106 ------RLT---------------------------GEALKD-------------AVARA 119

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTA-GYEGQVELIK-KGETKCYEC---DPK 251
            +V++  DN A R  +N  C+A   PLI + +A G+ GQ+ ++    E  CY C   D +
Sbjct: 120 DVVLDCTDNMATRQEINAACVALNTPLI-TASAVGFGGQLMVLTPPWEQGCYRCLWPDNQ 178

Query: 252 PAAKTYPGC 260
                   C
Sbjct: 179 EPE---RNC 184

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 59/249 (23%), Positives = 89/249 (35%), Gaps = 95/249 (38%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           +K S+VL+VG GG+GC   + L  +G  N+ ++D DT+ +SNL RQ L            
Sbjct: 29  LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHS---------- 78

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHT 136
                      DA +                   G+ K + AR++    NP   I   + 
Sbjct: 79  -----------DATV-------------------GQPKVESARDALTRINPHIAITPVNA 108

Query: 137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQF 196
                  L+                           DA + A                + 
Sbjct: 109 ------LLD---------------------------DAELAAL-------------IAEH 122

Query: 197 TLVMNALDNRAARNHVNRMCLASEVPLIESGTA-GYEGQVELIKKGETK-CYEC---DPK 251
            LV++  DN A RN +N  C A++VPL+ SG A   EGQ+ +    + + CY C      
Sbjct: 123 DLVLDCTDNVAVRNQLNAGCFAAKVPLV-SGAAIRMEGQITVFTYQDGEPCYRCLSRLFG 181

Query: 252 PAAKTYPGC 260
             A     C
Sbjct: 182 ENA---LTC 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.6 bits (190), Expect = 9e-15
 Identities = 90/562 (16%), Positives = 164/562 (29%), Gaps = 173/562 (30%)

Query: 39  VLSGFSNIEIVDLDTIDVSNLNRQFLFHKQ--HVGKSKAQVARNSALNF----NPDANIY 92
           +LS F +  + + D  DV ++ +  L  ++  H+  SK  V+    L F    +    + 
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMV 79

Query: 93  YQ-VDFHL--NRQFL---FHKQHVGKSKAQVARNSALN--FNPDANIVAHHTSIIRFLHL 144
            + V+  L  N +FL      +    S          +  +N D  + A +       ++
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKY-------NV 131

Query: 145 NRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYF-KQFTLVMNAL 203
           +R   + K           R + L   P  N++           GV    K   + ++  
Sbjct: 132 SRLQPYLK----------LRQALLELRPAKNVLID---------GVLGSGKT-WVALDVC 171

Query: 204 DNRAARNHVNRMCLASEVPLIESGTAGYEGQVE-LIKKGETKCYECDPKPAAKTYPGCTI 262
                 ++  +  +  ++  +           E +++  +   Y+ DP          + 
Sbjct: 172 -----LSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDP-------NWTSR 216

Query: 263 RNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAV 322
            +  S     I   +     L +    + C L+L            NV   Q  K   A 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----------NV---QNAKAWNAF 262

Query: 323 QLG--ILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRK-- 378
            L   IL            + +         S AT     +     +        P +  
Sbjct: 263 NLSCKIL------------LTTRFKQVTDFLSAATTT--HISLDHHSM----TLTPDEVK 304

Query: 379 -LFAKFFDADIRYLISMSDLWKTRKAPQ--PLVWDTLSDAVAGSSKETDGGGLKDQRVWS 435
            L  K+ D          DL   R+     P     LS  +   S   DG    D   W 
Sbjct: 305 SLLLKYLD------CRPQDL--PREVLTTNPRR---LS--IIAESIR-DGLATWDN--WK 348

Query: 436 VAEC---ARVFERSVR-----ELKTKFDA-AV-EKDEH-------LVW-DKDDKPAMDFV 477
              C     + E S+      E +  FD  +V     H       L+W D      M  V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 478 AACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQT 537
                   H +S+ EK   +                      + + +I++          
Sbjct: 409 NKL-----HKYSLVEKQPKE--------------------STISIPSIYLE--------- 434

Query: 538 VYLRKKPNHRDQM---IVPEKY 556
             L+ K  +   +   IV + Y
Sbjct: 435 --LKVKLENEYALHRSIV-DHY 453

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 78/508 (15%), Positives = 153/508 (30%), Gaps = 138/508 (27%)

Query: 13  LEDLIKKSKVLVVGAGGIGCELLKN-LVLSGFSNIEIVDLDT-----IDVSNLNR----- 61
           L +L     VL+ G  G G    K  + L    + ++          +++ N N      
Sbjct: 144 LLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 62  ---QFLFHKQHVGKSKAQVARNSALNFNPDANIYYQVDF---HLNRQFLFHKQHVGKSKA 115
              Q L +         Q+  N     +  +NI  ++      L R  L  K +      
Sbjct: 200 EMLQKLLY---------QIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPY------ 243

Query: 116 QVARNSALNFNPDANIVAH--HTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPD 173
               N  L       ++ +  +       +L+ + L              R   +  +  
Sbjct: 244 ---ENCLL-------VLLNVQNAKAWNAFNLSCKILL-----------TTRFKQV-TDFL 281

Query: 174 ANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEV----PL------ 223
           +     H S+      +   +  +L++  LD R          L  EV    P       
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------DLPREVLTTNPRRLSIIA 334

Query: 224 --IESGTAGYEG--QVELIKKGET--KCYEC-DPKPAAKTYPGCTI--RNTP-SEPIHCI 273
             I  G A ++    V   K            +P    K +   ++   +      +  +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 274 VWAKHLFNYLERLM--LMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNP 331
           +W   + + +  ++  L K   L+ K Q     +S  ++      KL     L    ++ 
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS-LVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 332 FTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGY--------DPRKLFAKF 383
           + +       S D              D      + + S  G+        +   LF   
Sbjct: 453 YNIPKTF--DSDDLIPPYL--------D------QYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 384 FDADIRYLISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWS--VAECAR 441
           F  D R+L         +K    +  D+ +   +GS   T    L+  + +   + +   
Sbjct: 497 F-LDFRFL--------EQK----IRHDSTAWNASGSILNT----LQQLKFYKPYICDNDP 539

Query: 442 VFERSVRELKTKFDAAVEKDEHLVWDKD 469
            +ER V  +   F   +E  E+L+  K 
Sbjct: 540 KYERLVNAIL-DFLPKIE--ENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-04
 Identities = 61/508 (12%), Positives = 127/508 (25%), Gaps = 179/508 (35%)

Query: 247 ECD-----PKPAAKTYP--GCTIRNTPSEPIHCIVWAKHLFNY---LERLMLMKRCPLIL 296
           E D         + T       + +   E +   V      NY   +  +   +R P ++
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 297 ---------KIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNP--FTVLSGLNICSSDA 345
                    ++    +  +  NV R    +    ++  +L L P    ++ G+       
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKLRQALLELRPAKNVLIDGV------L 159

Query: 346 GA-KAA-ASEATANGDVVRTSTRA--WASACGYDPRKLFAKFFDADIRYLISMSDLWKTR 401
           G+ K   A +   +  V         W +                +   L  +  L   +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN---------LKNCNSPETV-LEMLQKLL-YQ 208

Query: 402 KAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKD 461
             P    W + SD  +           + +R+      ++ +E  +  L           
Sbjct: 209 IDPN---WTSRSDHSSNIKLRIHSIQAELRRLLK----SKPYENCLLVL----------L 251

Query: 462 EHLVWDKDDKPAMDFVAAC----------------ANIRAHVFSIPEKSRF--------- 496
              V +     A +   +C                A    H+                  
Sbjct: 252 N--VQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 497 ---------DIKSMAGNIIP-AIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNH 546
                    D+        P  +    +I+A                      +R     
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRL----SIIAES--------------------IRDGLAT 343

Query: 547 RDQMIVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEE-----AVLKKTLNMSAM 601
            D      K++            K    I   +  +  AE+ +     +V   + ++  +
Sbjct: 344 WDNW----KHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 602 V--------------DVMVE-ASGSVIISSEEGET------------EANNDKPLEHGLI 634
           +               V+ +    S++    +  T            +  N+  L H  I
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSI 449

Query: 635 ISHRVSARDGPEFEILDQKDLPQPPAPD 662
           + H    +        D  DL  PP  D
Sbjct: 450 VDHYNIPKT------FDSDDLI-PPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 50/327 (15%), Positives = 102/327 (31%), Gaps = 61/327 (18%)

Query: 6   PGVFEKDLEDLIKKSKVLVVGAGGIGCELLKN--LVLSGFSNIEIVDLDTIDVSNLNRQF 63
             +   +++ L+   K L      +  E+L      LS  +      L T D  N     
Sbjct: 296 MTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NW---- 347

Query: 64  LFHKQHVGKSKAQVARNSALN----------------FNPDANIYYQVDFHLNRQFLFH- 106
               +HV   K      S+LN                F P A+I   +   L    ++  
Sbjct: 348 ----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---L--SLIWFD 398

Query: 107 --KQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFL-HLNRQFLFHKQHVGKSKAQVA 163
             K  V     ++ + S +   P  + ++  +  +     L  ++  H+  V        
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 164 RNSALNFNPDA------NIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCL 217
            +S  +  P        + + HH   I     +  F+   L    L+ +   +       
Sbjct: 459 FDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 218 ASEVPLIESGTAGYEGQVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAK 277
            S +  +         Q++  K      Y CD  P  +      +   P    + I  +K
Sbjct: 518 GSILNTL--------QQLKFYKP-----YICDNDPKYERLVNAILDFLPKIEENLIC-SK 563

Query: 278 HLFNYLERLMLMKRCPLILKIQKLLER 304
           +  + L   ++ +   +  +  K ++R
Sbjct: 564 YT-DLLRIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	726
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	99.97
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	99.97
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	99.97
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.97
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.96
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.96
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	98.21
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.29
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.79
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.79
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.56
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.5
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.5
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	96.42
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.34
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.16
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.71
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.48
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.27
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.26
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.25
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.12
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.07
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.95
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	94.67
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	94.44
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.22
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.19
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.14
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.11
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.05
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.03
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	93.95
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.94
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.93
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.9
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.9
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.88
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	93.72
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.48
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.43
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	93.36
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	93.36
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.34
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.2
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.2
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	92.94
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	92.93
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.92
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	92.86
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.81
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.64
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	92.5
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	92.47
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	92.44
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	92.41
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	92.39
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	92.38
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.31
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.26
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	92.24
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.23
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	92.21
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	92.01
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.91
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.89
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	91.69
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	91.62
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.55
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	91.45
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.42
4hb9_A	412	Similarities with probable monooxygenase; flavin,	91.33
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	91.31
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	91.22
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	91.19
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	91.1
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	91.07
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	91.02
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	90.97
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.84
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	90.69
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	90.62
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.43
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	90.4
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	90.31
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	90.28
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.28
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	90.2
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	90.19
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.17
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	90.14
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	90.13
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.09
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.07
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.06
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	89.97
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.96
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	89.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.92
1xq6_A	253	Unknown protein; structural genomics, protein stru	89.9
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	89.89
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	89.88
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.86
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.82
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	89.67
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.62
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.6
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	89.57
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	89.55
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	89.51
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	89.51
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.5
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	89.46
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	89.46
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	89.28
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	89.23
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	89.21
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.2
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	89.06
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	88.81
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	88.71
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	88.69
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	88.59
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.59
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.58
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	88.57
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	88.55
3tl2_A	315	Malate dehydrogenase; center for structural genomi	88.51
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	88.51
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.49
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.49
2cul_A	232	Glucose-inhibited division protein A-related PROT	88.41
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.37
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.21
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	88.21
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	88.16
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.06
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.04
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	88.02
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	88.01
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	87.99
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	87.93
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	87.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.8
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	87.7
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	87.69
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	87.59
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	87.5
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	87.49
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	87.47
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	87.36
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	87.35
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.35
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	87.31
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	87.18
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.17
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	87.14
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	87.09
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	87.0
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.94
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	86.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	86.88
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	86.85
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	86.81
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	86.79
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	86.78
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	86.7
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	86.62
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	86.56
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	86.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	86.31
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.24
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	86.18
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.18
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.1
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	86.1
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	86.09
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	85.97
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	85.91
4ezb_A	317	Uncharacterized conserved protein; structural geno	85.89
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	85.87
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	85.81
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	85.7
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	85.7
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	85.66
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	85.63
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	85.62
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	85.61
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	85.57
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	85.57
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	85.54
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.51
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	85.51
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	85.49
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	85.45
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	85.44
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	85.42
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	85.39
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	85.39
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	85.36
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	85.36
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	85.28
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	85.22
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	85.09
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.08
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	85.08
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	85.01
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	84.95
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	84.92
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	84.86
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	84.85
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	84.82
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	84.81
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	84.8
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	84.78
3dme_A	369	Conserved exported protein; structural genomics, P	84.77
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	84.68
4f6c_A	427	AUSA reductase domain protein; thioester reductase	84.65
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	84.57
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	84.5
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	84.49
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	84.46
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	84.42
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	84.42
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	84.4
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	84.33
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	84.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	84.26
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	84.18
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	84.16
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	84.16
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	84.13
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	84.1
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	84.03
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	84.03
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	84.03
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.01
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	84.0
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	83.96
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	83.96
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	83.88
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	83.85
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	83.75
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	83.73
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	83.72
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	83.62
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	83.6
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	83.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	83.54
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	83.5
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	83.46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	83.44
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	83.42
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	83.32
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	83.3
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	83.29
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	83.19
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	83.18
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	83.16
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	83.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	83.08
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	82.94
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	82.8
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	82.77
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	82.68
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	82.68
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	82.66
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	82.64
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	82.61
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	82.55
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	82.55
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	82.54
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	82.54
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	82.52
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	82.51
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	82.44
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	82.42
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	82.41
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	82.35
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	82.31
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	82.31
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	82.19
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	82.17
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	82.14
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	82.14
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	82.08
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	82.07
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	82.05
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	82.03
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	82.03
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	81.98
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	81.97
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	81.95
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	81.92
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	81.9
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	81.88
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	81.82
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	81.76
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	81.75
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	81.74
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	81.73
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	81.71
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	81.67
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	81.56
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	81.45
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	81.38
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	81.37
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	81.31
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	81.28
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	81.26
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	81.19
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	82.05
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	81.07
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.01
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	80.95
3qha_A	296	Putative oxidoreductase; seattle structural genomi	80.94
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	80.88
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	80.84
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.84
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	80.79
2bry_A	497	NEDD9 interacting protein with calponin homology a	80.77
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	80.73
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	80.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	80.64
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	80.64
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	80.57
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	80.53
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	80.51
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	80.49
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.48
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	80.46
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	80.46
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	80.43
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	80.42
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	80.42
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	80.39
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	80.38
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	80.29
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	80.28
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	80.27
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	80.27
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	80.26
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	80.25
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	80.22
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	80.22
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	80.2
4g65_A	461	TRK system potassium uptake protein TRKA; structur	80.2
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	80.07
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	80.06
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	80.03

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=3.7e-113  Score=980.95  Aligned_cols=530  Identities=52%  Similarity=0.881  Sum_probs=428.2

Q ss_pred             cccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhh
Q psy9783           5 IPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALN   84 (726)
Q Consensus         5 ~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~   84 (726)
                      |+++||.++|++|++++|+||||||+||++|++|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++|+++|++
T Consensus         3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~   82 (640)
T 1y8q_B            3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ   82 (640)
T ss_dssp             ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHT
T ss_pred             hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999965555


Q ss_pred             cCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHH
Q psy9783          85 FNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVAR  164 (726)
Q Consensus        85 ~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak  164 (726)
                      +|                                                                              
T Consensus        83 iN------------------------------------------------------------------------------   84 (640)
T 1y8q_B           83 FY------------------------------------------------------------------------------   84 (640)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             HC------------------------------------------------------------------------------
Confidence            54                                                                              


Q ss_pred             HHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCCCCc
Q psy9783         165 NSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETK  244 (726)
Q Consensus       165 ~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~~t~  244 (726)
                             |+++|+++..++++..+..+|+.++|+||+|+||+++|.++|++|+.+++|+|++|+.|+.|++.++.|+.++
T Consensus        85 -------P~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~  157 (640)
T 1y8q_B           85 -------PKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTE  157 (640)
T ss_dssp             -------TTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTSC
T ss_pred             -------CCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCCCCC
Confidence                   5556666666666655667889999999999999999999999999999999999999999999999999999


Q ss_pred             ceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHh
Q psy9783         245 CYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQL  324 (726)
Q Consensus       245 cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (726)
                      ||+|.+.++++++|.||++++|+.|+|||+||+++|+.||+.                 ....+++    .++       
T Consensus       158 Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~-----------------~~~~~~~----~~~-------  209 (640)
T 1y8q_B          158 CYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGE-----------------EDADQEV----SPD-------  209 (640)
T ss_dssp             CTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSC-----------------CCGGGCC----SCC-------
T ss_pred             CcccCCCCCCcccceeeecCCCCchHHHHHHHHHHHHHHhCC-----------------cchhhhh----ccc-------
Confidence            999999888899999999999999999999999999999993                 2222222    111       


Q ss_pred             hhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchH-HHHHHHhHHHHHHHHcCCcccCCCCC
Q psy9783         325 GILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPR-KLFAKFFDADIRYLISMSDLWKTRKA  403 (726)
Q Consensus       325 G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~-~~f~~~F~~~I~~Ll~~~~~w~~~~~  403 (726)
                         ..+|+....       ......+.......+.+.+...+.|+ .|+.||+ .+|+++|+++|++||+|++||+++|+
T Consensus       210 ---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~  278 (640)
T 1y8q_B          210 ---RADPEAAWE-------PTEAEARARASNEDGDIKRISTKEWA-KSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKP  278 (640)
T ss_dssp             ---TTCTTSCCC----------------------------CHHHH-HHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCC
T ss_pred             ---ccchhhhhh-------hhhhhhhhhhhhhhhHHHHHhhhhHH-HhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCC
Confidence               123322100       00001111122233445555567897 6777776 59999999999999999999999999


Q ss_pred             CCCcccCCCch-hhcCC-Cc--ccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHHHHH
Q psy9783         404 PQPLVWDTLSD-AVAGS-SK--ETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDFVAA  479 (726)
Q Consensus       404 P~pl~~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDFVtA  479 (726)
                      |+||.||.... +.... ..  .....+++++++|++.++.++|.+++++|.+++.. .....+++|||||+.|||||+|
T Consensus       279 P~pl~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~FdKDDd~h~dFV~a  357 (640)
T 1y8q_B          279 PVPLDWAEVQSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAE-KGDGAELIWDKDDPSAMDFVTS  357 (640)
T ss_dssp             CCCCCHHHHHHC--------------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHH-TCTTCCCCCCTTCHHHHHHHHH
T ss_pred             CCCcccCccccccccccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhh-cccCCCcccCCCCHHHHHHHHH
Confidence            99999998643 22111 00  01235778899999999999999999999999876 3457799999999999999999


Q ss_pred             HHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCccccccccCCC
Q psy9783         480 CANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTA  559 (726)
Q Consensus       480 AANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~~~e  559 (726)
                      ||||||+||+||++|||++|+|||||||||||||||||||+|+|+||++++.++.|||+|+|++++++++++.+ ..+.+
T Consensus       358 aaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~-~~p~~  436 (640)
T 1y8q_B          358 AANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVP-CALDP  436 (640)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEE-EECCC
T ss_pred             HHHHHHHHcCCCcCCHHHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEee-cccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888888 67789


Q ss_pred             CCCCCCCCCCCCeEEEEEECCCCcHHHHHHHHHhcccCCccceeEEE-ecCCeEEEeccccccccccCCchhhh-h----
Q psy9783         560 PNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKKTLNMSAMVDVMV-EASGSVIISSEEGETEANNDKPLEHG-L----  633 (726)
Q Consensus       560 Pnp~C~vC~~~~~~tl~id~~~~TL~~lid~ilk~~l~m~~~pdV~~-~~~G~ll~ss~e~e~~~nl~k~L~el-v----  633 (726)
                      |+|+|++|+..+++++++++++|||++|+++|++++|||.. |.|+. .+.+++||+++++++++||+|+|+|+ |    
T Consensus       437 p~~~c~vc~~~~~~~~~~~~~~~TL~~li~~~~~~~~~l~~-~~is~~~~~~~~ly~~~~~~~~~~l~~~l~el~v~~~~  515 (640)
T 1y8q_B          437 PNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVA-PDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGS  515 (640)
T ss_dssp             CCTTCTTTSSSCEEEEEECTTTCBHHHHHHCCCCCCTCCSS-CEEEESSSSCCEEECSSSSSSTTGGGSBGGGGTCCTTC
T ss_pred             CCCCCcccCCccEEEEEEeCCCCcHHHHHHHHHHHhhCCCC-ceEEEEcCCCcEEEeccchhhHHhhhCcHHHhCccCCc
Confidence            99999999766788999999999999999998788999998 99988 33458999999899999999999993 2    


Q ss_pred             ---------------hhcccCCCCCCCeEEEEec-CCCCCCCCc
Q psy9783         634 ---------------IISHRVSARDGPEFEILDQ-KDLPQPPAP  661 (726)
Q Consensus       634 ---------------~v~~~~~~~~~~~feV~~~-~~~~~p~~~  661 (726)
                                     .+.|+++.++...|+|.++ |.+.+|+++
T Consensus       516 ~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (640)
T 1y8q_B          516 RLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQA  559 (640)
T ss_dssp             EEEEEETTTTEEEEEEEEECSCCCTTCCEEETTCC---------
T ss_pred             EEEecCCCccEEEEEEEEecCcccCCCCeEEecCCccccCCCcc
Confidence                           2345555555567777776 555555544

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-98  Score=898.03  Aligned_cols=516  Identities=27%  Similarity=0.412  Sum_probs=397.3

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCCcCCCCCCCccChhHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGF-----SNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ   76 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv-----~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~   76 (726)
                      +.||+++||.++|++|++++|+||||||+||++|++||++||     |+|+|+|+|+|+.|||||||||+.+|||++||+
T Consensus       408 y~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~  487 (1015)
T 3cmm_A          408 YDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSE  487 (1015)
T ss_dssp             THHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHH
T ss_pred             hhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHH
Confidence            568999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccC
Q psy9783          77 VARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVG  156 (726)
Q Consensus        77 va~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg  156 (726)
                      +|+++++++||++..                                                                 
T Consensus       488 ~aa~~l~~iNP~v~~-----------------------------------------------------------------  502 (1015)
T 3cmm_A          488 VAAEAVCAMNPDLKG-----------------------------------------------------------------  502 (1015)
T ss_dssp             HHHHHHHHHCGGGTT-----------------------------------------------------------------
T ss_pred             HHHHHHHHHCCCCcc-----------------------------------------------------------------
Confidence            999777766666500                                                                 


Q ss_pred             cchhhhHHHHHHhhCCCCeEEEEeccccc---ccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccc
Q psy9783         157 KSKAQVARNSALNFNPDANIVAHHTSIIS---ADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEG  233 (726)
Q Consensus       157 ~sk~~~ak~~~~~~np~~~i~~~~~~i~~---~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G  233 (726)
                                        +|++++.++..   ..++.+|++++|+||+|+||+++|.++|++|+.+++|+|++|+.|+.|
T Consensus       503 ------------------~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G  564 (1015)
T 3cmm_A          503 ------------------KINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKG  564 (1015)
T ss_dssp             ------------------TEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred             ------------------eEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCcccc
Confidence                              44444444432   134568899999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCcceecCCCCCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcc
Q psy9783         234 QVELIKKGETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRS  313 (726)
Q Consensus       234 ~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (726)
                      +++++.|+.++||+|.++|+++++|+||++++|+.|+|||+||+++|+.||+...       +..+.|++..        
T Consensus       565 ~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~lf~~~~-------~~~~~~l~~~--------  629 (1015)
T 3cmm_A          565 NTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSA-------ENVNMYLTQP--------  629 (1015)
T ss_dssp             EEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHH-------HHHHHHHHCT--------
T ss_pred             ceEEEeCCCCCccCCCCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHhhhh-------hhhhhhccCc--------
Confidence            9999999999999999988889999999999999999999999999999999532       2222333211        


Q ss_pred             cchHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHc
Q psy9783         314 QLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLIS  393 (726)
Q Consensus       314 ~~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~  393 (726)
                         ++.+.+.    .....           .  ...+..-..   .+ ...++.|. +|+.||+.+|+++|+++|++||+
T Consensus       630 ---~~~~~~~----~~~~~-----------~--~~~l~~~~~---~l-~~~~~~~~-~c~~~a~~~f~~~F~~~I~~Ll~  684 (1015)
T 3cmm_A          630 ---NFVEQTL----KQSGD-----------V--KGVLESISD---SL-SSKPHNFE-DCIKWARLEFEKKFNHDIKQLLF  684 (1015)
T ss_dssp             ---THHHHHH----C---C-----------C--HHHHHHHHH---HH-HSCCSSHH-HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ---hhHHHHH----hccch-----------h--HHHHHHHHH---Hh-hcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence               1111110    00000           0  001100000   01 12245675 89999999999999999999998


Q ss_pred             C----------CcccCC-CCCCCCcccCCCchh-h----cCCCcccCCCCCCcc-cccCh-------------------H
Q psy9783         394 M----------SDLWKT-RKAPQPLVWDTLSDA-V----AGSSKETDGGGLKDQ-RVWSV-------------------A  437 (726)
Q Consensus       394 ~----------~~~w~~-~~~P~pl~~~~~~~~-~----~~~~~~~~~~~~~~~-~~~~~-------------------~  437 (726)
                      |          ++||++ ||+|+||.||..+.. .    +.+...+..+|++.+ ..|+.                   .
T Consensus       685 ~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~  764 (1015)
T 3cmm_A          685 NFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPN  764 (1015)
T ss_dssp             HSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCC
T ss_pred             hCCcccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHhHHHhcCCCCccccccCCHHHHHHHHhhCcCCCcCCc
Confidence            7          899999 799999999986431 1    111100111122211 11110                   0


Q ss_pred             --------------HHHHH-HHHHHHHHHHHhhhhh----ccCCCccccCCChh--hHHHHHHHHHHhHHhcCCCCCCHH
Q psy9783         438 --------------ECARV-FERSVRELKTKFDAAV----EKDEHLVWDKDDKP--AMDFVAACANIRAHVFSIPEKSRF  496 (726)
Q Consensus       438 --------------~~~~~-f~~s~~~L~~~l~~~~----~~~~~l~FDKDDd~--hmDFVtAAANLRA~nY~Ip~~s~~  496 (726)
                                    +...+ |.+++++|.++++...    ....|++||||||.  |||||+|||||||+||+||++|||
T Consensus       765 ~~~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~~  844 (1015)
T 3cmm_A          765 ANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQ  844 (1015)
T ss_dssp             SSCCCCSSTTSSCC---------CCHHHHTTSCCGGGGTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred             cCceeccchhhhcccccccccHHHHHHHHHHhccchhcccCCCCceeeecCCCchhHHHHHHHHHHHHHHHcCCCccCHH
Confidence                          01122 5567778887776532    14678999999997  999999999999999999999999


Q ss_pred             HHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhh--hhcccchhhhccCCCCCCccccccccCCCCCCCCCCCCCCCeE-
Q psy9783         497 DIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQA--RFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQR-  573 (726)
Q Consensus       497 ~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~--k~e~~rn~flnl~pn~~~~~~vP~~~~~ePnp~C~vC~~~~~~-  573 (726)
                      ++|+|||||||||||||||||||+|+|+||+|+|  +++.|||+|+|++++.    +++...+.+|+++|..|.    | 
T Consensus       845 ~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~f~nla~~~----~~~~~p~~~~~~~~~~~~----~~  916 (1015)
T 3cmm_A          845 KTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPF----FGFSEPIASPKGEYNNKK----YD  916 (1015)
T ss_dssp             HHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEEEEETTTTE----EEEECCCBCCEEEETTEE----EE
T ss_pred             HHHHHhCCcCccchhHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhccCCc----eeecCCCCCCCCCCCCCC----CC
Confidence            9999999999999999999999999999999998  6999999999998642    233233445556676553    3 


Q ss_pred             EE--EEECC-CCcHHHHHHHHHhcccCCccceeEEEecCC-eEEEecccc--ccccccCCchhhhhhhcccC---CCCCC
Q psy9783         574 TI--GLDVT-KMTVAEFEEAVLKKTLNMSAMVDVMVEASG-SVIISSEEG--ETEANNDKPLEHGLIISHRV---SARDG  644 (726)
Q Consensus       574 tl--~id~~-~~TL~~lid~ilk~~l~m~~~pdV~~~~~G-~ll~ss~e~--e~~~nl~k~L~elv~v~~~~---~~~~~  644 (726)
                      |+  +++++ ++||++|+++| ++++||.. +.|+   .| +++|++++.  ++++|++++|+|++.-+.+.   ++.++
T Consensus       917 t~wd~~~v~~~~Tl~~li~~~-~~~~~~~~-~~i~---~~~~~ly~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~  991 (1015)
T 3cmm_A          917 KIWDRFDIKGDIKLSDLIEHF-EKDEGLEI-TMLS---YGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVST  991 (1015)
T ss_dssp             TTTCEEEEESCCBHHHHHHHH-HHTTCCEE-EEEE---ETTEEEEETTCCHHHHHHHTTSBHHHHHHHHSSSCCCSSCCE
T ss_pred             eEEEEEEECCCCcHHHHHHHH-HHHhCCcc-eeec---cCCcEEEecCCCchhhHHhccCCHHHHHHhhccCcCCCCceE
Confidence            33  66666 99999999998 56888755 4444   34 799998874  78899999999999987765   46778


Q ss_pred             CeEEEEecC
Q psy9783         645 PEFEILDQK  653 (726)
Q Consensus       645 ~~feV~~~~  653 (726)
                      +.|||+|++
T Consensus       992 ~~~~~~~~d 1000 (1015)
T 3cmm_A          992 MILEICADD 1000 (1015)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999999984

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=1.9e-60  Score=526.93  Aligned_cols=356  Identities=32%  Similarity=0.554  Sum_probs=277.6

Q ss_pred             CHHHHH-HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCC
Q psy9783          10 EKDLED-LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPD   88 (726)
Q Consensus        10 g~~~q~-kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~   88 (726)
                      |.+.++ +|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||+
T Consensus        30 g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           30 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             CSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            444454 5699999999999999999999999999999999999999999999999999999999999999777766666


Q ss_pred             CceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHH
Q psy9783          89 ANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSAL  168 (726)
Q Consensus        89 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~  168 (726)
                      ++|                                                                             
T Consensus       110 v~v-----------------------------------------------------------------------------  112 (434)
T 1tt5_B          110 CNV-----------------------------------------------------------------------------  112 (434)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             CEE-----------------------------------------------------------------------------
Confidence            544                                                                             


Q ss_pred             hhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhc------------CCcEEEEccCCccceEE
Q psy9783         169 NFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLAS------------EVPLIESGTAGYEGQVE  236 (726)
Q Consensus       169 ~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~------------~iPlI~sg~~G~~G~v~  236 (726)
                              +++..++.+.  +.++++++|+||+|+||+++|.++|++|+.+            ++|+|++|+.|+.|++.
T Consensus       113 --------~~~~~~i~~~--~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~  182 (434)
T 1tt5_B          113 --------VPHFNKIQDF--NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAR  182 (434)
T ss_dssp             --------EEEESCGGGB--CHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEE
T ss_pred             --------EEEecccchh--hHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEE
Confidence                    4444444432  3578899999999999999999999999874            99999999999999999


Q ss_pred             EEeCCCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhccc
Q psy9783         237 LIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQ  314 (726)
Q Consensus       237 ~i~p~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (726)
                      ++.|+.++||+|...  |++..+|.||++++|..|.|||+||+.+   +|.                             
T Consensus       183 v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i---~~~-----------------------------  230 (434)
T 1tt5_B          183 VILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML---QWP-----------------------------  230 (434)
T ss_dssp             EECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT---HHH-----------------------------
T ss_pred             EECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHH---HHh-----------------------------
Confidence            999999999999854  5678899999999999999999999742   011                             


Q ss_pred             chHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcC
Q psy9783         315 LPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM  394 (726)
Q Consensus       315 ~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~  394 (726)
                                                                             .                        
T Consensus       231 -------------------------------------------------------~------------------------  231 (434)
T 1tt5_B          231 -------------------------------------------------------K------------------------  231 (434)
T ss_dssp             -------------------------------------------------------H------------------------
T ss_pred             -------------------------------------------------------h------------------------
Confidence                                                                   0                        


Q ss_pred             CcccCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhH
Q psy9783         395 SDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAM  474 (726)
Q Consensus       395 ~~~w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hm  474 (726)
                            . .|.                                                       ..++.||+||+.|+
T Consensus       232 ------~-~~~-------------------------------------------------------~~~~~~d~d~~~~~  249 (434)
T 1tt5_B          232 ------E-QPF-------------------------------------------------------GEGVPLDGDDPEHI  249 (434)
T ss_dssp             ------S-CTT-------------------------------------------------------CTTCCCCTTCHHHH
T ss_pred             ------h-ccc-------------------------------------------------------ccccccCCCcHHHH
Confidence                  0 000                                                       01235999999999


Q ss_pred             HHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCcccccc
Q psy9783         475 DFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPE  554 (726)
Q Consensus       475 DFVtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~  554 (726)
                      +||++++|+||..|+|+..+++.+++++|+||||||||||||+|++++|++|+|.|.-+...+ |+-..  ........ 
T Consensus       250 ~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~-~l~~d--~~~~~~~~-  325 (434)
T 1tt5_B          250 QWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN-YLVFN--DVDGLYTY-  325 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCS-EEEEE--CSBSCEEE-
T ss_pred             HHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCc-eEEEE--cCCCceeE-
Confidence            999999999999999999999999999999999999999999999999999999985433333 32111  10011111 


Q ss_pred             ccCCCCCCCCCCCCCCCeEEEEEECCCCcHHHHHHHHHhc-ccCCccceeEEEe--cCCeEEEecc----ccccccccCC
Q psy9783         555 KYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK-TLNMSAMVDVMVE--ASGSVIISSE----EGETEANNDK  627 (726)
Q Consensus       555 ~~~~ePnp~C~vC~~~~~~tl~id~~~~TL~~lid~ilk~-~l~m~~~pdV~~~--~~G~ll~ss~----e~e~~~nl~k  627 (726)
                      ....+|+|.|.+|+..+ ..+.++. ++||++|++.+.++ +++|.. |+|+..  +.+.+||.++    +.++++||+|
T Consensus       326 ~~~~~~~~~C~vC~~~~-~~~~~~~-~~tl~~~~~~l~~~~~~~~~~-~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~  402 (434)
T 1tt5_B          326 TFEAERKENCPACSQLP-QNIQFSP-SAKLQEVLDYLTNSASLQMKS-PAITATLEGKNRTLYLQSVTSIEERTRPNLSK  402 (434)
T ss_dssp             EECCCCCTTCTTTCSSC-BCCCC------CTTHHHHHHHCSSCCCSS-CCCEET----TEECCCCCCTTTTTTSCC-CCC
T ss_pred             EEeccCCCCCCccCCCC-ceEEECC-CccHHHHHHHHhccCccceEc-cEEEEEccCCCcEEEecCCcchhhhhHhhhcC
Confidence            12346899999998644 2334443 57999999999776 688888 999873  2336777654    3468899999


Q ss_pred             chhhh
Q psy9783         628 PLEHG  632 (726)
Q Consensus       628 ~L~el  632 (726)
                      +|+||
T Consensus       403 ~l~~l  407 (434)
T 1tt5_B          403 TLKEL  407 (434)
T ss_dssp             -----
T ss_pred             CHHHc
Confidence            99997

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=2.2e-57  Score=534.95  Aligned_cols=360  Identities=31%  Similarity=0.532  Sum_probs=294.9

Q ss_pred             ccccCHHHHHHH-hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhh
Q psy9783           6 PGVFEKDLEDLI-KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALN   84 (726)
Q Consensus         6 ~~~~g~~~q~kL-~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~   84 (726)
                      -.++|.+.|+++ ++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++|+++++++|++
T Consensus       397 ~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~  476 (805)
T 2nvu_B          397 DFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLND  476 (805)
T ss_dssp             TCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHH
Confidence            346799999988 9999999999999999999999999999999999999999999999999999999999999966666


Q ss_pred             cCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHH
Q psy9783          85 FNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVAR  164 (726)
Q Consensus        85 ~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak  164 (726)
                      +||++                                                                           
T Consensus       477 ~np~~---------------------------------------------------------------------------  481 (805)
T 2nvu_B          477 RVPNC---------------------------------------------------------------------------  481 (805)
T ss_dssp             HSTTC---------------------------------------------------------------------------
T ss_pred             HCCCC---------------------------------------------------------------------------
Confidence            65554                                                                           


Q ss_pred             HHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhh------------cCCcEEEEccCCcc
Q psy9783         165 NSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLA------------SEVPLIESGTAGYE  232 (726)
Q Consensus       165 ~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~------------~~iPlI~sg~~G~~  232 (726)
                                +|+++..++.+.  +.++++++|+||+|+||+++|.++|++|+.            +++|+|++|+.|+.
T Consensus       482 ----------~v~~~~~~~~~~--~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~  549 (805)
T 2nvu_B          482 ----------NVVPHFNKIQDF--NDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFK  549 (805)
T ss_dssp             ----------EEEEEESCGGGS--CHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTE
T ss_pred             ----------EEEEEecccccc--HHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCc
Confidence                      555555555442  357889999999999999999999999987            49999999999999


Q ss_pred             ceEEEEeCCCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhh
Q psy9783         233 GQVELIKKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNV  310 (726)
Q Consensus       233 G~v~~i~p~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (726)
                      |++.++.|+.++||+|...  |++..+|.||++++|+.|.|||.||+.+   +|.                         
T Consensus       550 G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~---~~~-------------------------  601 (805)
T 2nvu_B          550 GNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML---QWP-------------------------  601 (805)
T ss_dssp             EEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT---HHH-------------------------
T ss_pred             eeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHh---hcc-------------------------
Confidence            9999999999999999854  5677899999999999999999998742   011                         


Q ss_pred             hcccchHHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHH
Q psy9783         311 IRSQLPKLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRY  390 (726)
Q Consensus       311 ~~~~~~~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~  390 (726)
                                                                                 ..                   
T Consensus       602 -----------------------------------------------------------~~-------------------  603 (805)
T 2nvu_B          602 -----------------------------------------------------------KE-------------------  603 (805)
T ss_dssp             -----------------------------------------------------------HH-------------------
T ss_pred             -----------------------------------------------------------cc-------------------
Confidence                                                                       00                   


Q ss_pred             HHcCCcccCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCC
Q psy9783         391 LISMSDLWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDD  470 (726)
Q Consensus       391 Ll~~~~~w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDD  470 (726)
                                  .|.                                                       ..++.||+||
T Consensus       604 ------------~~~-------------------------------------------------------~~~~~~d~~~  616 (805)
T 2nvu_B          604 ------------QPF-------------------------------------------------------GEGVPLDGDD  616 (805)
T ss_dssp             ------------CTT-------------------------------------------------------STTCCCCTTC
T ss_pred             ------------cCC-------------------------------------------------------CCcccCCCCC
Confidence                        000                                                       1134599999


Q ss_pred             hhhHHHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCcc
Q psy9783         471 KPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQM  550 (726)
Q Consensus       471 d~hmDFVtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~  550 (726)
                      +.|++||++++|+||..|+|+..+++.+++++|+||||||||||||+|++++|++|+|.|.-+...+ |+-.-  .....
T Consensus       617 ~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~-~~~~~--~~~~~  693 (805)
T 2nvu_B          617 PEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNN-YLVFN--DVDGL  693 (805)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCS-EEEEE--CSBSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCc-eEEec--CCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999986443343 32111  11011


Q ss_pred             ccccccCCCCCCCCCCCCCCCeEEEEEECCCCcHHHHHHHHHhc-ccCCccceeEEEe-cCC-eEEEeccc----ccccc
Q psy9783         551 IVPEKYLTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK-TLNMSAMVDVMVE-ASG-SVIISSEE----GETEA  623 (726)
Q Consensus       551 ~vP~~~~~ePnp~C~vC~~~~~~tl~id~~~~TL~~lid~ilk~-~l~m~~~pdV~~~-~~G-~ll~ss~e----~e~~~  623 (726)
                      ... ....+|+|.|.+|+..+ ..+.++. ++||++|++.+.++ ++++.. |+|+.. ..| ++||.++.    .++++
T Consensus       694 ~~~-~~~~~~~~~C~~C~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ly~~~~~~~~~~~~~  769 (805)
T 2nvu_B          694 YTY-TFEAERKENCPACSQLP-QNIQFSP-SAKLQEVLDYLTNSASLQMKS-PAITATLEGKNRTLYLQSVTSIEERTRP  769 (805)
T ss_dssp             EEE-EECCCCCTTCTTTSCCC-EEEEECT-TSBHHHHHHHHHHCTTTCCSS-CEEEEEETTEEEEEECCSSHHHHHHHGG
T ss_pred             ccc-cccCCCCCCCCeeCcee-EEEEECC-cChHHHHHHHHHhhhccCccc-ceEEEEccCCCcEEEecCccchhhhhHh
Confidence            111 12346899999998644 3556664 68999999999876 678888 999874 223 77887653    34889


Q ss_pred             ccCCchhhh
Q psy9783         624 NNDKPLEHG  632 (726)
Q Consensus       624 nl~k~L~el  632 (726)
                      ||+|+|+||
T Consensus       770 ~l~~~l~~l  778 (805)
T 2nvu_B          770 NLSKTLKEL  778 (805)
T ss_dssp             GGGSBTTTT
T ss_pred             hhcCCHHHc
Confidence            999999997

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=100.00  E-value=3.3e-44  Score=375.61  Aligned_cols=216  Identities=24%  Similarity=0.390  Sum_probs=138.8

Q ss_pred             CCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccchHHHHHHHhhhccCCcc
Q psy9783         253 AAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLPKLIQAVQLGILRLNPF  332 (726)
Q Consensus       253 ~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~p~  332 (726)
                      -++++|+|||||||+.|+|||+|||++|++||+...       +..+.|++.           |++++.+..    ....
T Consensus        10 ~~ks~P~CTlrsfP~~i~HcI~WAr~lFe~lF~~~~-------~~~n~~l~d-----------p~~~~~~~~----~~~~   67 (276)
T 1z7l_A           10 FEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPA-------ENVNQYLTD-----------SKFVERTLR----LAGT   67 (276)
T ss_dssp             ----CCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHH-------HHHHHHTTC-----------SHHHHHHHT----SSTT
T ss_pred             CCCCCceeccCCCCCChhHHHHHHHHHHHHHHcCCH-------HHHHHhhcC-----------hHHHHHHHh----ccch
Confidence            368899999999999999999999999999999432       222222221           122111110    0000


Q ss_pred             ccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcC----------CcccCC-C
Q psy9783         333 TVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISM----------SDLWKT-R  401 (726)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~----------~~~w~~-~  401 (726)
                                 .. ...+..-   ...+....++.|. +|+.||+.+|+++|+++|++||+|          ++||++ |
T Consensus        68 -----------~~-~~~l~~i---~~~L~~~~p~~~~-~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~K  131 (276)
T 1z7l_A           68 -----------QP-LEVLEAV---QRSLVLQRPQTWG-DCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPK  131 (276)
T ss_dssp             -----------HH-HHHHHHH---HHHHTTTCCSSHH-HHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSC
T ss_pred             -----------hh-HHHHHHH---HHHHhhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCC
Confidence                       00 0011100   0112223455674 799999999999999999999998          899999 8


Q ss_pred             CCCCCcccCCCchhh-----cCCCcccCCCCCCc----ccc-----------cChHH--------------HHHHHHHHH
Q psy9783         402 KAPQPLVWDTLSDAV-----AGSSKETDGGGLKD----QRV-----------WSVAE--------------CARVFERSV  447 (726)
Q Consensus       402 ~~P~pl~~~~~~~~~-----~~~~~~~~~~~~~~----~~~-----------~~~~~--------------~~~~f~~s~  447 (726)
                      |+|+||+||..+..+     +.+...+..+|++.    +.+           |++.+              ...++.+++
T Consensus       132 r~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~~~~~~  211 (276)
T 1z7l_A          132 RCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRL  211 (276)
T ss_dssp             CCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------CCSHHH
T ss_pred             CCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCCCcCCccccccccchhhhchhcccccHHHH
Confidence            999999999864311     11100000111110    001           11111              113355688


Q ss_pred             HHHHHHhhhhh----ccCCCccccCCChh--hHHHHHHHHHHhHHhcCCCCCCHHHHHHhhcCCC
Q psy9783         448 RELKTKFDAAV----EKDEHLVWDKDDKP--AMDFVAACANIRAHVFSIPEKSRFDIKSMAGNII  506 (726)
Q Consensus       448 ~~L~~~l~~~~----~~~~~l~FDKDDd~--hmDFVtAAANLRA~nY~Ip~~s~~~vK~IAGnII  506 (726)
                      ++|.+++.+..    ....+++||||||.  |||||+|||||||+||+||++|||++|+||||||
T Consensus       212 ~~L~~~l~~~~~~~~~~~~pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II  276 (276)
T 1z7l_A          212 EELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII  276 (276)
T ss_dssp             HHHHHHSCCGGGSTTCCCCCCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred             HHHHHHhhhhhhcccccCCCcceecCCCcccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence            88988886532    14678999999997  9999999999999999999999999999999998

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=3.7e-37  Score=331.86  Aligned_cols=162  Identities=23%  Similarity=0.396  Sum_probs=145.5

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+++||.++|++|++++|+||||||+||++|++|+++|||+|+|+|.|+|+.+||+|||||+.+|||++||++++++
T Consensus        19 Y~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~   98 (346)
T 1y8q_A           19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLER   98 (346)
T ss_dssp             HHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHH
T ss_pred             HHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |+++||++++..                                                                    
T Consensus        99 l~~lnp~v~v~~--------------------------------------------------------------------  110 (346)
T 1y8q_A           99 AQNLNPMVDVKV--------------------------------------------------------------------  110 (346)
T ss_dssp             HHHTCTTSEEEE--------------------------------------------------------------------
T ss_pred             HHhHCCCeEEEE--------------------------------------------------------------------
Confidence            777777765554                                                                    


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG  241 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~  241 (726)
                                       +...+.+  ...+++++||+||+|+||.++|.++|++|+.+++|+|.+++.|+.|++.+..+ 
T Consensus       111 -----------------~~~~~~~--~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~~d~~-  170 (346)
T 1y8q_A          111 -----------------DTEDIEK--KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLG-  170 (346)
T ss_dssp             -----------------ECSCGGG--CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEEEECS-
T ss_pred             -----------------EecccCc--chHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEEEecC-
Confidence                             3333322  23578899999999999999999999999999999999999999999998886 


Q ss_pred             CCcceecCCC
Q psy9783         242 ETKCYECDPK  251 (726)
Q Consensus       242 ~t~cy~C~~~  251 (726)
                      ...|+.|.+.
T Consensus       171 ~~~~~~~~~~  180 (346)
T 1y8q_A          171 EHEFVEEKTK  180 (346)
T ss_dssp             EEEEEEECC-
T ss_pred             CCCEEEcCCC
Confidence            5889999765

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=6.6e-35  Score=330.13  Aligned_cols=187  Identities=21%  Similarity=0.319  Sum_probs=165.0

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+++||.++|++|++++|+||||||+||++|++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++
T Consensus        15 Y~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~   94 (531)
T 1tt5_A           15 YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEF   94 (531)
T ss_dssp             THHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHH
T ss_pred             hhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |+++||++++......+                                                               
T Consensus        95 l~~lNp~v~v~~~~~~~---------------------------------------------------------------  111 (531)
T 1tt5_A           95 LQELNSDVSGSFVEESP---------------------------------------------------------------  111 (531)
T ss_dssp             HHTTCTTSBCCEESSCH---------------------------------------------------------------
T ss_pred             HHHhCCCCeEEEeCCCc---------------------------------------------------------------
Confidence            99999988776532210                                                               


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG  241 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~  241 (726)
                         ..+.                  .+..+++++||+||+|+||.++|.++|++|+.+++|+|.+|+.|+.|++.++.| 
T Consensus       112 ---~~~~------------------~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~p-  169 (531)
T 1tt5_A          112 ---ENLL------------------DNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIK-  169 (531)
T ss_dssp             ---HHHH------------------HSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECS-
T ss_pred             ---chhh------------------hhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEcC-
Confidence               1110                  123478899999999999999999999999999999999999999999999999 


Q ss_pred             CCcceecCCCCCCCCCCCccccCCCCCcchhhhh
Q psy9783         242 ETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIVW  275 (726)
Q Consensus       242 ~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~~  275 (726)
                      ...|++|.+.  +..++.|+++.+|..|.||-.+
T Consensus       170 ~~~~~d~~~~--~~~~~lr~~~p~P~~~~~~~~~  201 (531)
T 1tt5_A          170 EHPVIESHPD--NALEDLRLDKPFPELREHFQSY  201 (531)
T ss_dssp             CEEESCCCCS--SCCCCCCSSSCCHHHHHHHHTC
T ss_pred             CceeccCCCC--CCCCcccccCCCCCchhhhhcc
Confidence            4556666543  5678999999999999999654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=9.2e-34  Score=299.19  Aligned_cols=160  Identities=29%  Similarity=0.497  Sum_probs=120.1

Q ss_pred             ccccCH-HHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhh
Q psy9783           6 PGVFEK-DLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALN   84 (726)
Q Consensus         6 ~~~~g~-~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~   84 (726)
                      ++-||. ++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+||.|||+||| |+.+|||++|+++++++|++
T Consensus        22 L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~  100 (292)
T 3h8v_A           22 LKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRN  100 (292)
T ss_dssp             ----------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHHHHHHHHH
T ss_pred             ccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHHHHHHHHh
Confidence            456998 8999999999999999999999999999999999999999999999999997 68999999999999988777


Q ss_pred             cCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHH
Q psy9783          85 FNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVAR  164 (726)
Q Consensus        85 ~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak  164 (726)
                      +||+++|...                                                                      
T Consensus       101 iNP~v~v~~~----------------------------------------------------------------------  110 (292)
T 3h8v_A          101 INPDVLFEVH----------------------------------------------------------------------  110 (292)
T ss_dssp             HCTTSEEEEE----------------------------------------------------------------------
T ss_pred             hCCCcEEEEe----------------------------------------------------------------------
Confidence            7777666543                                                                      


Q ss_pred             HHHHhhCCCCeEEEEeccccccccccccc-----------ccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCC--c
Q psy9783         165 NSALNFNPDANIVAHHTSIISADFGVNYF-----------KQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAG--Y  231 (726)
Q Consensus       165 ~~~~~~np~~~i~~~~~~i~~~~~~~~~~-----------~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G--~  231 (726)
                                     ..++++...-..|+           +++|+||+|+||+++|.++|++|+.+++|+|++|+.|  +
T Consensus       111 ---------------~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~~  175 (292)
T 3h8v_A          111 ---------------NYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAV  175 (292)
T ss_dssp             ---------------CCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTSS
T ss_pred             ---------------cccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeeccee
Confidence                           22222211011222           6899999999999999999999999999999999875  8


Q ss_pred             cceEEEEeCCCCcceecCCC
Q psy9783         232 EGQVELIKKGETKCYECDPK  251 (726)
Q Consensus       232 ~G~v~~i~p~~t~cy~C~~~  251 (726)
                      .||+.++.|+.++||+|.+.
T Consensus       176 ~Gqv~~~~pg~t~Cy~Cl~p  195 (292)
T 3h8v_A          176 SGHIQLIIPGESACFACAPP  195 (292)
T ss_dssp             EEEEEEECTTTSCCTTSSSC
T ss_pred             EEEEEEECCCCCCCHhhcCC
Confidence            99999999999999999854

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=7e-33  Score=285.84  Aligned_cols=164  Identities=26%  Similarity=0.443  Sum_probs=146.2

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.++|++|++++|+|||+||+||+++++|+++||++|+|+|.|.|+.|||+||+||+.+|||++|+++++
T Consensus         9 y~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~   88 (251)
T 1zud_1            9 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ   88 (251)
T ss_dssp             THHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHH
T ss_pred             hhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHH
Confidence            5789999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++++++||++++..                                                                  
T Consensus        89 ~~l~~~np~~~v~~------------------------------------------------------------------  102 (251)
T 1zud_1           89 QRLTQLNPDIQLTA------------------------------------------------------------------  102 (251)
T ss_dssp             HHHHHHCTTSEEEE------------------------------------------------------------------
T ss_pred             HHHHHHCCCCEEEE------------------------------------------------------------------
Confidence            87777777766554                                                                  


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                         +...+... ....+++++|+||+|+||+++|..+|+.|+.+++|+|.+++.|+.|++.++.
T Consensus       103 -------------------~~~~~~~~-~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~~~  162 (251)
T 1zud_1          103 -------------------LQQRLTGE-ALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLT  162 (251)
T ss_dssp             -------------------ECSCCCHH-HHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEEEC
T ss_pred             -------------------EeccCCHH-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEEEc
Confidence                               22222211 1235678899999999999999999999999999999999999999999999


Q ss_pred             CCC-CcceecCCC
Q psy9783         240 KGE-TKCYECDPK  251 (726)
Q Consensus       240 p~~-t~cy~C~~~  251 (726)
                      |+. ++||.|...
T Consensus       163 p~~~~~c~~cl~~  175 (251)
T 1zud_1          163 PPWEQGCYRCLWP  175 (251)
T ss_dssp             TTCTTCCHHHHCC
T ss_pred             cCCCCCcEEEeCC
Confidence            987 799999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=99.97  E-value=3.1e-32  Score=292.54  Aligned_cols=173  Identities=23%  Similarity=0.307  Sum_probs=141.3

Q ss_pred             ccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhc
Q psy9783           6 PGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNF   85 (726)
Q Consensus         6 ~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~   85 (726)
                      .|+|+..++++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|+|++|+++++++++++
T Consensus        21 wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i  100 (340)
T 3rui_A           21 WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI  100 (340)
T ss_dssp             HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred             HhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh
Confidence            37788878899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeec-cccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHH
Q psy9783          86 NPDANIYYQVD-FHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVAR  164 (726)
Q Consensus        86 np~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak  164 (726)
                      ||++++..... +.+..+++.                                                   .    ..+
T Consensus       101 nP~v~v~~~~~~i~~~g~~~~---------------------------------------------------~----~~~  125 (340)
T 3rui_A          101 FPLMDATGVKLSIPMIGHKLV---------------------------------------------------N----EEA  125 (340)
T ss_dssp             CTTCEEEEECCCCCCTTSCCS---------------------------------------------------C----HHH
T ss_pred             CCCCEEEEEeccccccCcccc---------------------------------------------------h----hhh
Confidence            99888765321 111111000                                                   0    000


Q ss_pred             HHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe-----
Q psy9783         165 NSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK-----  239 (726)
Q Consensus       165 ~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~-----  239 (726)
                      ..+                 +.+...++++++|+|++|+||+++|.++|++|+.+++|+|+++ .|+.||+.+..     
T Consensus       126 ~~~-----------------~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l~v~~g~~~~  187 (340)
T 3rui_A          126 QHK-----------------DFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRHGNRDE  187 (340)
T ss_dssp             HHH-----------------HHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEEEEECCCCCS
T ss_pred             hcC-----------------CHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEEEEeeccccc
Confidence            000                 0011246789999999999999999999999999999999986 99999998864     


Q ss_pred             --CCCCcceecCCC
Q psy9783         240 --KGETKCYECDPK  251 (726)
Q Consensus       240 --p~~t~cy~C~~~  251 (726)
                        |+.++||+|.+.
T Consensus       188 ~~~~~~~Cy~C~~~  201 (340)
T 3rui_A          188 QSSKQLGCYFCHDV  201 (340)
T ss_dssp             SCCCCBCCGGGGSS
T ss_pred             CCCCCCCeeeeCCC
Confidence              567899999853

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=99.97  E-value=1.4e-31  Score=275.55  Aligned_cols=164  Identities=32%  Similarity=0.548  Sum_probs=145.3

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.+.|++|++++|+|||+||+|++++++|+++|+++|+|+|.|.|+.|||+||+||+.+|||++|+++++
T Consensus        12 y~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~   91 (249)
T 1jw9_B           12 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR   91 (249)
T ss_dssp             THHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             hhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHH
Confidence            6799999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      +++.++||++++..                                                                  
T Consensus        92 ~~l~~~np~~~v~~------------------------------------------------------------------  105 (249)
T 1jw9_B           92 DALTRINPHIAITP------------------------------------------------------------------  105 (249)
T ss_dssp             HHHHHHCTTSEEEE------------------------------------------------------------------
T ss_pred             HHHHHHCCCcEEEE------------------------------------------------------------------
Confidence            77777777665543                                                                  


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK  239 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~  239 (726)
                                         +...+... ...+++.++|+||+|+||.++|..++++|+..++|+|.+++.|+.|++.++.
T Consensus       106 -------------------~~~~~~~~-~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~~~~  165 (249)
T 1jw9_B          106 -------------------VNALLDDA-ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFT  165 (249)
T ss_dssp             -------------------ECSCCCHH-HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEEC
T ss_pred             -------------------EeccCCHh-HHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEEEEe
Confidence                               22222211 1134678999999999999999999999999999999999999999999999


Q ss_pred             CCC-CcceecCCC
Q psy9783         240 KGE-TKCYECDPK  251 (726)
Q Consensus       240 p~~-t~cy~C~~~  251 (726)
                      |+. ++||.|...
T Consensus       166 p~~~~~c~~c~~~  178 (249)
T 1jw9_B          166 YQDGEPCYRCLSR  178 (249)
T ss_dssp             CCTTCCCTHHHHT
T ss_pred             CCCCCCceEEECC
Confidence            876 799999853

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=99.97  E-value=2.1e-30  Score=279.93  Aligned_cols=163  Identities=28%  Similarity=0.414  Sum_probs=139.7

Q ss_pred             Cccccc---ccC--HHH-HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHH
Q psy9783           2 ATKIPG---VFE--KDL-EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKA   75 (726)
Q Consensus         2 ~~~~~~---~~g--~~~-q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka   75 (726)
                      +.||+.   +||  .+. |++|++++|+|||+||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|||++|+
T Consensus        95 Y~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka  174 (353)
T 3h5n_A           95 YSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKT  174 (353)
T ss_dssp             THHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHH
T ss_pred             hhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHH
Confidence            456654   455  456 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhcccc
Q psy9783          76 QVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHV  155 (726)
Q Consensus        76 ~va~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hv  155 (726)
                      +++++++.++||+                                                                   
T Consensus       175 ~~~~~~l~~~np~-------------------------------------------------------------------  187 (353)
T 3h5n_A          175 EVIKRELLKRNSE-------------------------------------------------------------------  187 (353)
T ss_dssp             HHHHHHHHHHCTT-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHCCC-------------------------------------------------------------------
Confidence            9999666655555                                                                   


Q ss_pred             CcchhhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHH-HHHHHHHHhhhcCCcEEEEccCCccce
Q psy9783         156 GKSKAQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRA-ARNHVNRMCLASEVPLIESGTAGYEGQ  234 (726)
Q Consensus       156 g~sk~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~-aR~~in~~c~~~~iPlI~sg~~G~~G~  234 (726)
                                        ++|+++...+.+...-.. ++++|+||+|+||+. +|.++|++|+.+++|+|.+|+.|..|+
T Consensus       188 ------------------v~v~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g~~g~  248 (353)
T 3h5n_A          188 ------------------ISVSEIALNINDYTDLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAV  248 (353)
T ss_dssp             ------------------SEEEEEECCCCSGGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEETTEEE
T ss_pred             ------------------CeEEEeecccCchhhhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeCCEEE
Confidence                              455555555544331233 889999999999999 999999999999999999999999999


Q ss_pred             EEE-EeCCCCcceecCC
Q psy9783         235 VEL-IKKGETKCYECDP  250 (726)
Q Consensus       235 v~~-i~p~~t~cy~C~~  250 (726)
                      +.. +.|+.++||+|..
T Consensus       249 ~g~~~~p~~~~C~~C~~  265 (353)
T 3h5n_A          249 FGPLYVPGKTGCYECQK  265 (353)
T ss_dssp             EEEEECTTTSCCTTTTC
T ss_pred             EEEEEcCCCCCChhhcC
Confidence            865 4699999999974

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.97  E-value=8.9e-31  Score=298.04  Aligned_cols=171  Identities=23%  Similarity=0.317  Sum_probs=140.2

Q ss_pred             cccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcC
Q psy9783           7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFN   86 (726)
Q Consensus         7 ~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~n   86 (726)
                      |+|+..++++|++++|+||||||+||++|++|+++|||+|+|+|.|+|+.|||+||+||+.+|||++|+++|+++++++|
T Consensus       314 Rllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN  393 (615)
T 4gsl_A          314 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  393 (615)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             hhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC
Confidence            67888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeec-cccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHH
Q psy9783          87 PDANIYYQVD-FHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARN  165 (726)
Q Consensus        87 p~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~  165 (726)
                      |++++..... +.+..++                                                   ++..    .+.
T Consensus       394 P~V~v~~~~~~Ipm~gh~---------------------------------------------------v~~e----~~~  418 (615)
T 4gsl_A          394 PLMDATGVKLSIPMIGHK---------------------------------------------------LVNE----EAQ  418 (615)
T ss_dssp             TTCEEEEECCCCCCTTCC---------------------------------------------------CSCH----HHH
T ss_pred             CCcEEEEeeccccccCcc---------------------------------------------------ccch----hhh
Confidence            9988775321 1111110                                                   0000    000


Q ss_pred             HHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEe------
Q psy9783         166 SALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIK------  239 (726)
Q Consensus       166 ~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~------  239 (726)
                      .+                 +.+...+++.++|+||+|+||+++|.++|++|+.+++|+|+++ .|+.||+.+..      
T Consensus       419 ~l-----------------~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~Gql~v~~g~~~~~  480 (615)
T 4gsl_A          419 HK-----------------DFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRHGNRDEQ  480 (615)
T ss_dssp             HH-----------------HHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSSEEEEEECCC----
T ss_pred             cC-----------------CHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccceeEEEEeecccccC
Confidence            00                 0011246788999999999999999999999999999999986 99999998764      


Q ss_pred             -CCCCcceecCC
Q psy9783         240 -KGETKCYECDP  250 (726)
Q Consensus       240 -p~~t~cy~C~~  250 (726)
                       |+.++||.|.+
T Consensus       481 ~~~~~~CY~Cl~  492 (615)
T 4gsl_A          481 SSKQLGCYFCHD  492 (615)
T ss_dssp             --CCCCCTTTSC
T ss_pred             CCCCCCceeeCC
Confidence             46789999985

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-30  Score=311.59  Aligned_cols=182  Identities=20%  Similarity=0.320  Sum_probs=158.0

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+++||.++|++|++++|+||||||+||++|++|+++|||+|+|+|.|+|+.+||+|||||+.+|||++||++++++
T Consensus        10 Y~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~   89 (1015)
T 3cmm_A           10 YSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAK   89 (1015)
T ss_dssp             HHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHH
T ss_pred             ccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |+++||+++|..                                                                    
T Consensus        90 L~~lNP~v~v~~--------------------------------------------------------------------  101 (1015)
T 3cmm_A           90 LAELNAYVPVNV--------------------------------------------------------------------  101 (1015)
T ss_dssp             HTTSCTTSCEEE--------------------------------------------------------------------
T ss_pred             HHHHCCCCeEEE--------------------------------------------------------------------
Confidence            888877766553                                                                    


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccC-cHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALD-NRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK  240 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alD-n~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p  240 (726)
                                       +...++     .+++.+||+||+|+| |.++|..+|++|+.+++|+|.+++.|+.|++.+.  
T Consensus       102 -----------------~~~~l~-----~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~d--  157 (1015)
T 3cmm_A          102 -----------------LDSLDD-----VTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVD--  157 (1015)
T ss_dssp             -----------------CCCCCC-----STTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEE--
T ss_pred             -----------------ecCCCC-----HHHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEec--
Confidence                             222222     257889999999999 9999999999999999999999999999998663  


Q ss_pred             CCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhH
Q psy9783         241 GETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKH  278 (726)
Q Consensus       241 ~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~  278 (726)
                       .++||.|...  ..+.+...|+| +.|. ++||+.+.++
T Consensus       158 -~~~~~~c~~~~~~~p~~~~i~~i-~~p~-~v~~l~~~~h  194 (1015)
T 3cmm_A          158 -LGDEFTVLDPTGEEPRTGMVSDI-EPDG-TVTMLDDNRH  194 (1015)
T ss_dssp             -CCSCEEESBSSCCCCCEEEEEEE-CTTC-EEEESTTCCC
T ss_pred             -CCCceEEeeCCCCCCccccccCC-CCCc-eeEeeecccc
Confidence             3679999853  23456667888 5564 7999886653

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.96  E-value=9.7e-30  Score=289.34  Aligned_cols=171  Identities=23%  Similarity=0.316  Sum_probs=137.6

Q ss_pred             cccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcC
Q psy9783           7 GVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFN   86 (726)
Q Consensus         7 ~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~n   86 (726)
                      |++|..+|++|++++|+||||||+||++|++|+++|||+|+|+|.|+|+.|||+||+||+.+|||++||++|+++|+++|
T Consensus       315 rll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iN  394 (598)
T 3vh1_A          315 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  394 (598)
T ss_dssp             HHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHC
T ss_pred             hccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHC
Confidence            46777778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeecc-ccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHH
Q psy9783          87 PDANIYYQVDF-HLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARN  165 (726)
Q Consensus        87 p~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~  165 (726)
                      |++++...... .+++++                                                   ++.+..    .
T Consensus       395 P~v~v~~~~~~I~~pgh~---------------------------------------------------i~~~~~----~  419 (598)
T 3vh1_A          395 PLMDATGVKLSIPMIGHK---------------------------------------------------LVNEEA----Q  419 (598)
T ss_dssp             TTCEEEEECCCCCCSSCC---------------------------------------------------CCSHHH----H
T ss_pred             CCcEEEEEeccccccCcc---------------------------------------------------cccccc----c
Confidence            98887753321 011000                                                   000000    0


Q ss_pred             HHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeC-----
Q psy9783         166 SALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKK-----  240 (726)
Q Consensus       166 ~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p-----  240 (726)
                      .+                 +.+...++++++|+||+|+||+++|..+|++|+.+++|+|.+ +.|+.|++.+..+     
T Consensus       420 ~l-----------------~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a-a~G~~Gqv~v~~g~~p~~  481 (598)
T 3vh1_A          420 HK-----------------DFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRHGNRDEQ  481 (598)
T ss_dssp             HH-----------------HHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE-EECSSEEEEEEEC-----
T ss_pred             cc-----------------CHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE-EECCccEEEEEccCCCcc
Confidence            00                 001123678899999999999999999999999999999986 5899999987752     


Q ss_pred             --CCCcceecCC
Q psy9783         241 --GETKCYECDP  250 (726)
Q Consensus       241 --~~t~cy~C~~  250 (726)
                        +.++||+|..
T Consensus       482 ~~~~~~Cy~Cl~  493 (598)
T 3vh1_A          482 SSKQLGCYFCHD  493 (598)
T ss_dssp             ---CBCCTTTSC
T ss_pred             CCCCCCceeecC
Confidence              3578999974

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=98.21  E-value=2.8e-07  Score=96.59  Aligned_cols=66  Identities=20%  Similarity=0.371  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhhhh---------hc----cCCCccccCCChhhHHHHHHHHHHhHHhcCCCC-CCHHHHHHhhcCC
Q psy9783         440 ARVFERSVRELKTKFDAA---------VE----KDEHLVWDKDDKPAMDFVAACANIRAHVFSIPE-KSRFDIKSMAGNI  505 (726)
Q Consensus       440 ~~~f~~s~~~L~~~l~~~---------~~----~~~~l~FDKDDd~hmDFVtAAANLRA~nY~Ip~-~s~~~vK~IAGnI  505 (726)
                      .++|...+++|...++.-         |+    ...||.||..|+.|++||.|||||||.+|||+. .++-.+..++.++
T Consensus       100 ~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~d~~~i~~~~~~~  179 (276)
T 1z7l_A          100 HTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSV  179 (276)
T ss_dssp             HHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcC
Confidence            355778888888775531         21    356899999999999999999999999999986 5665555555443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.29  E-value=0.00079  Score=58.75  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4689999999999999999999997789998854

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.79  E-value=0.0075  Score=56.35  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=32.7

Q ss_pred             HHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          14 EDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        14 q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      -+++.+.+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~   52 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNE   52 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            356678899999999999999999999996 799998763

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.79  E-value=0.0019  Score=67.54  Aligned_cols=36  Identities=39%  Similarity=0.658  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|+|+||+|..++..|+..|+++|+|++.+
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            567899999999999999999999999999998654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.56  E-value=0.0099  Score=53.40  Aligned_cols=36  Identities=31%  Similarity=0.526  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++...+|+|+|+|++|..+++.|...|. +++++|.+
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~   38 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   38 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3556789999999999999999999996 58888865

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.50  E-value=0.0053  Score=62.32  Aligned_cols=36  Identities=33%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|||+|.+|...++.|..+|. +++||+.+
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            3788999999999999999999999996 69999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.50  E-value=0.013  Score=53.41  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...+|+|+|+|.+|..+++.|...|. +++++|.|
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~   38 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKS   38 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            45689999999999999999999996 68899964

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=96.42  E-value=0.001  Score=59.62  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CCCCCCeEEEEEECCCCcHHHHHHHHHhc-ccCCccceeEEEe--cCC-eEEEec---cccccccccCCchhhh
Q psy9783         566 VCSPKPQRTIGLDVTKMTVAEFEEAVLKK-TLNMSAMVDVMVE--ASG-SVIISS---EEGETEANNDKPLEHG  632 (726)
Q Consensus       566 vC~~~~~~tl~id~~~~TL~~lid~ilk~-~l~m~~~pdV~~~--~~G-~ll~ss---~e~e~~~nl~k~L~el  632 (726)
                      +|++.+ ..+.++. ++||++|||.+.+. .|.|.. |+|+..  +.| +||+.+   .|..|+.||+|+|.||
T Consensus         1 ~Cg~~~-~~l~v~~-~~TL~~lid~L~~~p~~qlk~-PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eL   71 (98)
T 1y8x_B            1 GSSQLP-QNIQFSP-SAKLQEVLDYLTNSASLQMKS-PAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKEL   71 (98)
T ss_dssp             ----CC-CCEECCT-TCBHHHHHHHHHHCTTCCCSS-CEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGG
T ss_pred             CCCCCc-EEEEECC-chhHHHHHHHHHhChHhhccC-CeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHh
Confidence            476533 3445553 78999999999765 789998 999875  223 677664   4677999999999998

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.34  E-value=0.012  Score=64.33  Aligned_cols=33  Identities=30%  Similarity=0.581  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhC-C-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSG-F-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~G-v-~~i~iiD~D   52 (726)
                      ++|+|+|+|++|..+++.|+..| + ..+.+.|.+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~   36 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT   36 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC
Confidence            48999999999999999999988 3 689888753

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.0088  Score=64.01  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG  227 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg  227 (726)
                      .+++++|+||+|+..+- -..+.+.|.++++.+++..
T Consensus        73 ~~~~~~DvVi~~~p~~~-~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           73 EVMKEFELVIGALPGFL-GFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             HHHTTCSEEEECCCGGG-HHHHHHHHHHHTCEEEECC
T ss_pred             HHHhCCCEEEEecCCcc-cchHHHHHHhcCcceEeee
Confidence            45788999999998763 4567889999999999854

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.79  E-value=0.069  Score=52.45  Aligned_cols=40  Identities=28%  Similarity=0.250  Sum_probs=28.9

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          11 KDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ......|.+++|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus        13 ~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R   53 (236)
T 3e8x_A           13 GRENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVR   53 (236)
T ss_dssp             --------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Confidence            34456789999999997 9999999999999995 6888774

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.71  E-value=0.02  Score=51.29  Aligned_cols=32  Identities=31%  Similarity=0.648  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            589999999999999999999994 68888853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.48  E-value=0.08  Score=50.09  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .++|+|.|+ |+||.++++.|+..| .++++++.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~   37 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDS   37 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeCh
Confidence            368999997 999999999999999 5788887653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.27  E-value=0.087  Score=50.12  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      +.+.+|+|+|+|.+|..+++.|... |. .++++|.|
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~   72 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIR   72 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECC
Confidence            4467999999999999999999999 96 58888864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.25  E-value=0.092  Score=50.93  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ++|+|.| .|+||.++++.|+..| .++++++.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCc
Confidence            5899999 5999999999999999 5788887653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.12  E-value=0.043  Score=57.30  Aligned_cols=36  Identities=28%  Similarity=0.600  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      |++++|+|||+|.+|...++.|...|. +++|||.+.
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence            578999999999999999999999994 699999754

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.07  E-value=0.07  Score=59.88  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhC-C--CeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSG-F--SNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~G-v--~~i~iiD~D~   53 (726)
                      ..||+|||+||||..++..|++.+ +  ..|+++|.+.
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            468999999999999999999864 5  5899998654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.00  E-value=0.082  Score=58.65  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |++++|+|||.|.+|...++.|...|. +++++|.+
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~   44 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT   44 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCC
Confidence            568899999999999999999999994 79999964

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.95  E-value=0.1  Score=52.68  Aligned_cols=34  Identities=29%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.++|||.|+|.||.++++.|+..|. ++++++.+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~   35 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRS   35 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999999999999999999996 57777643

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=94.44  E-value=0.055  Score=50.42  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             EEEEEC---CCCcHHHHHHHHHhcccCCccceeEEEec--CCeEEEeccccccccccCCchhh-------hhhhcccCC
Q psy9783         574 TIGLDV---TKMTVAEFEEAVLKKTLNMSAMVDVMVEA--SGSVIISSEEGETEANNDKPLEH-------GLIISHRVS  640 (726)
Q Consensus       574 tl~id~---~~~TL~~lid~ilk~~l~m~~~pdV~~~~--~G~ll~ss~e~e~~~nl~k~L~e-------lv~v~~~~~  640 (726)
                      .+.++.   .++||++|++.+ +.+||+..  ++++..  ...++|   ..++++|++|+|++       +++|++.++
T Consensus         9 vl~v~~~dl~~~TL~dLV~~l-~~~~gy~~--eiSV~~~~~~rLLy---D~DfDDnl~k~L~dLgv~~gsfLtv~DEdd   81 (127)
T 3onh_A            9 VIKLSSDCLNKMKLSDFVVLI-REKYSYPQ--DISLLDASNQRLLF---DYDFEDLNDRTLSEINLGNGSIILFSDEEG   81 (127)
T ss_dssp             EEEECHHHHHHCBHHHHHHHH-HHHHTCCS--SEEEEETTTTEEEE---ETTBCTTTTSBTTTTTCCTTCEEEEEESCC
T ss_pred             EEEeCcccccccCHHHHHHHH-HHhcCCCC--cEEEEecCCCCeEe---CCCccccccCcHHHcCcCCCcEEEEEcccc
Confidence            445554   579999999995 77788754  777762  336765   35689999999999       566666553

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.22  E-value=0.57  Score=45.69  Aligned_cols=36  Identities=22%  Similarity=0.537  Sum_probs=31.0

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      +..++|+|.| .|+||.++++.|+..|.. ++.++|.+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~   53 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   53 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcC
Confidence            6678999999 699999999999999963 78888754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.19  E-value=0.2  Score=48.47  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=27.2

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+|.| .|+||.++++.|+..| .++.+++.+
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~   33 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARK   33 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence            799999 7999999999999999 568888754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.14  E-value=0.079  Score=52.03  Aligned_cols=32  Identities=19%  Similarity=0.442  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|+|+|+|.+|..+++.|...|. .++++|.|
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~   32 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKD   32 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            379999999999999999999996 68899854

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.11  E-value=0.23  Score=51.44  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=30.0

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..+..++|||.| .|.||.++++.|...| .+++++|.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   57 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDN   57 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence            356788999999 5999999999999999 46777764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.05  E-value=0.14  Score=52.88  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+.+++|||.|+ |+||.++++.|+..| .++.++|.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~   53 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNF   53 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence            3567789999996 999999999999999 468888754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.03  E-value=0.24  Score=51.25  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          11 KDLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...+..+..++|||.|+ |.||.++++.|+..|. ++.++|..
T Consensus        11 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           11 SSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             ----------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            34566788899999996 9999999999999995 57777754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=93.95  E-value=0.23  Score=51.31  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      +..++|||.|+ |.||.++++.|+..|.. ++..+|.
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            45678999997 99999999999999953 4555553

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.94  E-value=0.27  Score=51.15  Aligned_cols=35  Identities=26%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|.|+ |.||.++++.|+..| .++.+++.+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~   43 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARP   43 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECC
Confidence            44679999997 999999999999999 567777644

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.93  E-value=0.26  Score=50.70  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             HHHHHHHhcCcEEEEc-CchHHHHHHHHHHHhCCC--eEEEEeC
Q psy9783          11 KDLEDLIKKSKVLVVG-AGGIGCELLKNLVLSGFS--NIEIVDL   51 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~--~i~iiD~   51 (726)
                      ......|.+++++|.| .||||.++++.|+..|.+  ++.++|.
T Consensus        25 ~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r   68 (287)
T 3rku_A           25 RKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAAR   68 (287)
T ss_dssp             HHHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             ccchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEEC
Confidence            3445678899999998 689999999999999985  7777764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.90  E-value=0.61  Score=47.64  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|||.|+ |+||.++++.|+..|. +++++|.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   43 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTAR   43 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            45678999996 9999999999999995 6776653

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.90  E-value=0.38  Score=50.51  Aligned_cols=36  Identities=17%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      +.+++|||.| .|+||.++++.|+.. |..++.+++.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~   56 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRD   56 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            5678999999 599999999999999 98889888754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.88  E-value=0.3  Score=47.04  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=26.4

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~-~V~~~~R   32 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH-EVLAVVR   32 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEe
Confidence            36999997 9999999999999995 6777763

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.72  E-value=0.093  Score=58.56  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=28.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+..++|+|+|+|++|..+++.|+..|-.+|+++|.
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R   55 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACR   55 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEES
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEEC
Confidence            456779999999999999999999984347888874

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.48  E-value=0.33  Score=50.40  Aligned_cols=34  Identities=26%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..++|||.|+ |+||..+++.|+..|. ++.++|.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   59 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   59 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999996 9999999999999994 6777774

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.43  E-value=0.07  Score=49.89  Aligned_cols=33  Identities=18%  Similarity=0.403  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..|+|||+|..|+.+|..|++.|+ +++|+|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            3569999999999999999999998 49999853

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=93.36  E-value=0.37  Score=46.69  Aligned_cols=32  Identities=22%  Similarity=0.416  Sum_probs=26.8

Q ss_pred             CcEEEEc-CchHHHHHHHHHH-HhCCCeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLV-LSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLa-l~Gv~~i~iiD~D   52 (726)
                      ++|+|.| .|+||.++++.|+ ..|. ++++++.+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~   39 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQ   39 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESS
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecC
Confidence            3599999 5999999999999 8887 67877654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.34  E-value=0.074  Score=49.27  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.|
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            45789999999999999999999995 68999865

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.20  E-value=0.094  Score=48.09  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.|.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence            4589999999999999999999996 699999763

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.20  E-value=0.2  Score=52.40  Aligned_cols=39  Identities=28%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             HHHHHhcCcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          13 LEDLIKKSKVLVVG-AGGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        13 ~q~kL~~~kVlvVG-aGgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      +...+..++|||.| .|.||.++++.|+.. | .+++++|..
T Consensus        18 ~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~   58 (372)
T 3slg_A           18 GPGSMKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQ   58 (372)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESC
T ss_pred             CCcccCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCC
Confidence            34567788999999 699999999999998 6 468888754

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=92.94  E-value=0.52  Score=48.01  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=28.5

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|||.| .|.||..+++.|+..|. ++++++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            46899999 69999999999999995 68887765

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=92.93  E-value=0.52  Score=49.01  Aligned_cols=37  Identities=32%  Similarity=0.448  Sum_probs=28.4

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++|||.|+ |+||..+++.|+..|..+++++|..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            356689999996 9999999999999996678888754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.92  E-value=0.22  Score=52.08  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999998789999865

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=92.86  E-value=0.086  Score=56.00  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=32.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++++|+|+||+|..++..|+..|+.+|+|++.+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            467899999999999999999999999999998643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.81  E-value=0.045  Score=50.33  Aligned_cols=39  Identities=15%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             HHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        13 ~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ........+|+|+|+|++|..+++.|...|+. ++++|.+
T Consensus        15 ~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~   53 (144)
T 3oj0_A           15 IVRKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRN   53 (144)
T ss_dssp             HHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESC
T ss_pred             HHHhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            33445588999999999999999999999987 9998843

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.64  E-value=0.079  Score=55.45  Aligned_cols=36  Identities=22%  Similarity=0.440  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|+|+||+|..++..|+..|+.+|+|+|.+
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            457899999999999999999999999999998744

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=92.50  E-value=0.24  Score=54.80  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..++|+|+|+|++|..+++.|+..|. +++++|.+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~   35 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT   35 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECC
Confidence            35789999999999999999999995 58888754

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=92.47  E-value=0.91  Score=46.88  Aligned_cols=39  Identities=23%  Similarity=0.474  Sum_probs=28.1

Q ss_pred             HHHHHHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          12 DLEDLIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        12 ~~q~kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .....+..++|||.|+ |.||.++++.|+..|. ++.++|.
T Consensus        20 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   59 (343)
T 2b69_A           20 QGHMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   59 (343)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3445677889999996 9999999999999994 6777764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=92.44  E-value=0.11  Score=55.18  Aligned_cols=35  Identities=17%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++++|+|+||+|..++..|+..|+++|+|++.
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nR  180 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNR  180 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            46789999999999999999999999999999863

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=92.41  E-value=0.51  Score=49.27  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHH--hCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVL--SGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal--~Gv~~i~iiD~D   52 (726)
                      +..++|||.| .|+||.++++.|+.  .|. ++.++|..
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~   45 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKF   45 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECC
Confidence            4568999997 69999999999999  674 57777753

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=92.39  E-value=0.6  Score=47.87  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|||.| .|.||.++++.|+..| .+++++|.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   46 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRP   46 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecC
Confidence            4799999 5999999999999999 478888754

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=92.38  E-value=0.11  Score=54.06  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++++|+|+||+|..++..|+..|+.+|+|++.
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R  152 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANR  152 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeC
Confidence            45789999999999999999999999999999753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.31  E-value=0.12  Score=56.52  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=35.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|...||+|+|+|..|..+++.|+.+|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            5788999999999999999999999999999999976

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.26  E-value=0.093  Score=54.71  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=33.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +.+++|+|+|+||+|..++..|+..|+++|+|++.+.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5788999999999999999999999999999987553

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=92.24  E-value=0.92  Score=45.92  Aligned_cols=31  Identities=35%  Similarity=0.654  Sum_probs=26.6

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|||.|+ |+||.++++.|+..|. +++++|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   32 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDN   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeC
Confidence            47999997 9999999999999995 6777764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.23  E-value=0.13  Score=53.02  Aligned_cols=35  Identities=29%  Similarity=0.494  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|||+|++|..+++.|...|+ +++++|.+
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            567899999999999999999999998 89988743

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=92.21  E-value=0.5  Score=48.84  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+..++|||.| .|+||.++++.|+..| .+++++|.+
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   54 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNF   54 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECC
Confidence            45678999998 6999999999999999 578888754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=92.01  E-value=0.11  Score=54.10  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|+|+||+|..++..|+..|+.+|+|++.
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R  158 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNR  158 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEEC
Confidence            46789999999999999999999999999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.91  E-value=0.14  Score=56.08  Aligned_cols=38  Identities=21%  Similarity=0.440  Sum_probs=35.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +|...||+|+|+|..|+.+++.|+.+|+++|+++|..-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            57889999999999999999999999999999999875

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.89  E-value=0.12  Score=54.07  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++++|+|+||.|..++..|+..|+++|+|++.
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nR  154 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTR  154 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEES
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence            45789999999999999999999999999999863

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=91.69  E-value=0.76  Score=47.08  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=28.4

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .+++|||.| .|+||.++++.|+..|- .++.++|..
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~   38 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL   38 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            356899999 59999999999999984 368887753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=91.62  E-value=0.38  Score=48.16  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=28.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r   39 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIAR   39 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5667888888 68999999999999997 6888774

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.55  E-value=0.15  Score=52.31  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+ +|+|+|+||.|..++..|+..|+++|+|++.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            356 99999999999999999999999999998754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.55  E-value=0.64  Score=46.93  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~   65 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART   65 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            46778899997 78999999999999996 57777643

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=91.45  E-value=0.14  Score=56.94  Aligned_cols=35  Identities=29%  Similarity=0.509  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCC--CeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGF--SNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv--~~i~iiD   50 (726)
                      .|.+.+|+|+|+||.|..+++.|+.+|+  ++|+|+|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3567899999999999999999999999  8999998

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.42  E-value=0.15  Score=52.24  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..++|+|+|+||+|..++..|+..| .+++++|.
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R  150 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNR  150 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEEC
Confidence            45789999999999999999999999 78988763

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=91.33  E-value=0.17  Score=52.90  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.||+|||+|..|+.+|-.|++.|+ +++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            4689999999999999999999998 58999865

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=91.31  E-value=0.46  Score=47.94  Aligned_cols=34  Identities=35%  Similarity=0.509  Sum_probs=28.1

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r   42 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGR   42 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567788888 68999999999999996 5777764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=91.22  E-value=0.2  Score=46.93  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +|+|||+|.+|+++|..|++.|. +++|+|...
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            69999999999999999999997 699999754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=91.19  E-value=0.76  Score=48.41  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+..++|||.|+ |.||.++++.|+..|..+++++|..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL   66 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECC
Confidence            356678999995 9999999999999995578877643

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=91.10  E-value=0.21  Score=50.20  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             HHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          13 LEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        13 ~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ....+...+|.|||+|.+|..++++|+..|. ++++.|.+
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~   51 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRD   51 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3457889999999999999999999999996 68888754

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=91.07  E-value=0.55  Score=47.28  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=29.1

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~   41 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARD   41 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677888887 68999999999999997 47787743

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=91.02  E-value=0.8  Score=44.99  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.-++|+|.| .|+||.++++.|+..|-.++.+++.+
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~   57 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQ   57 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcC
Confidence            3456899999 69999999999999994477777754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=90.97  E-value=0.17  Score=55.00  Aligned_cols=35  Identities=34%  Similarity=0.543  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|+|+|++|..+++.|...|+++++++|.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r  199 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR  199 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            57889999999999999999999999999999874

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.84  E-value=0.21  Score=51.77  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ...||+|||+|++|+.++..|+..|. ++++++|.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999995 478998854

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=90.69  E-value=0.38  Score=48.96  Aligned_cols=29  Identities=34%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ++|||.|+ |+||.++++.|+..|  ++.+++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~   31 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVID   31 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEE
Confidence            37999995 999999999999999  455544

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=90.62  E-value=1.1  Score=46.52  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+.+++|||.| .|+||.++++.|+..|. +++++|.+
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            457788999999 69999999999999995 68887754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.43  E-value=0.23  Score=51.42  Aligned_cols=36  Identities=19%  Similarity=0.407  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|+|||+|++|..+++.|...|. ++.++|..
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            3678899999999999999999999998 88888854

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=90.40  E-value=0.22  Score=51.63  Aligned_cols=33  Identities=33%  Similarity=0.613  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ..++|+|+|+||.|..++..|...|+.+|+|++
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~n  150 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA  150 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            357899999999999999999999999999975

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=90.31  E-value=0.25  Score=51.81  Aligned_cols=34  Identities=21%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..||.|||+|.+|+.++..|+..|+.+++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3689999999999999999999998679999865

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=90.28  E-value=1  Score=46.08  Aligned_cols=31  Identities=26%  Similarity=0.489  Sum_probs=26.5

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|||.| .|+||.++++.|+..|. +++++|.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeC
Confidence            4799999 69999999999999994 6777764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.28  E-value=0.18  Score=51.89  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|+|+||+|..++..|+..| .+++|++.+
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~  151 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRT  151 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence            35689999999999999999999999 899998743

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=90.20  E-value=1.1  Score=46.07  Aligned_cols=33  Identities=36%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|.| .|+||.++++.|+..|. ++.++|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNF   35 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            46899998 59999999999999994 57777753

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=90.19  E-value=1.6  Score=44.79  Aligned_cols=32  Identities=28%  Similarity=0.533  Sum_probs=26.3

Q ss_pred             cEEEEc-CchHHHHHHHHHHHh---CC--CeEEEEeCC
Q psy9783          21 KVLVVG-AGGIGCELLKNLVLS---GF--SNIEIVDLD   52 (726)
Q Consensus        21 kVlvVG-aGgiGceiaknLal~---Gv--~~i~iiD~D   52 (726)
                      +|||.| .|+||.++++.|+..   |+  .+++++|..
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~   39 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence            699998 699999999999996   53  478887743

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.17  E-value=0.21  Score=50.65  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=29.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.. +|+|||+|++|..+++.|...|+ +++++|.
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r  147 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNR  147 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            456 99999999999999999999998 8988874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.16  E-value=0.25  Score=51.63  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||+|||+|++|+.++..|+..|. +++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            689999999999999999999994 78888754

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=90.14  E-value=1.7  Score=43.50  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|+|.|+ |+||..+++.|...+-.++.+++.+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~   34 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRN   34 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECC
Confidence            37999994 9999999999998833567776654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=90.13  E-value=0.28  Score=48.30  Aligned_cols=36  Identities=14%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+...+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5778899999999999999999999995 68888754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.09  E-value=0.23  Score=52.21  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=28.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..||+|||+|++|+.++..|+..|. .++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4689999999999999999999996 6777763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.07  E-value=0.27  Score=51.16  Aligned_cols=32  Identities=25%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .++|+|+|+||.|..++..|+..| .+|+|++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nR  149 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNR  149 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            789999999999999999999999 99999753

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.06  E-value=0.8  Score=46.25  Aligned_cols=36  Identities=31%  Similarity=0.467  Sum_probs=27.9

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+++++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~   45 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD   45 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45677888888 58999999999999996 68887654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=89.97  E-value=0.27  Score=52.35  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++...||.|||+|.+|..++..|+..|.++++++|-+
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~   40 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA   40 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3567899999999999999999999998889998854

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.96  E-value=0.23  Score=51.32  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..||+|||+|++|+.++..|+..|. +++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            3689999999999999999999995 78888865

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=89.96  E-value=1.5  Score=46.22  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=28.3

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|||.|+ |+||.++++.|+..|. +++++|.+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   62 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   62 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            468999996 9999999999999994 68888754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.92  E-value=0.27  Score=51.08  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|+|||+|++|..+++.|...|. +++++|..
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3678899999999999999999999997 78888854

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=89.90  E-value=0.94  Score=43.97  Aligned_cols=35  Identities=23%  Similarity=0.146  Sum_probs=28.2

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhC-CCeEEEEeCC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSG-FSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~G-v~~i~iiD~D   52 (726)
                      ..++|+|.| .|+||.++++.|+..| -.++.+++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            356899998 6999999999999995 2467777754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=89.89  E-value=0.94  Score=45.44  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   45 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDV   45 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36678888887 78999999999999996 5777764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=89.88  E-value=1.4  Score=45.25  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=27.1

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ++|||.| .|+||.++++.|+..|- .+++++|..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~   39 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKL   39 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            5799999 69999999999999953 368887753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.86  E-value=0.28  Score=49.41  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            79999999999999999999996 788887653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.82  E-value=0.28  Score=51.08  Aligned_cols=33  Identities=21%  Similarity=0.554  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|+.++..|+..|+ .+++++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            479999999999999999999997 678888853

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=89.67  E-value=0.23  Score=51.66  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||+|||+|++|+.++..|++.|. +++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            689999999999999999999995 68887754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.62  E-value=0.94  Score=44.82  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~   42 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADIN   42 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCC
Confidence            35678899998 68999999999999996 47777643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.60  E-value=0.3  Score=50.20  Aligned_cols=32  Identities=25%  Similarity=0.573  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            589999999999999999999997 68888754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=89.57  E-value=0.27  Score=52.18  Aligned_cols=36  Identities=25%  Similarity=0.541  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...||.|||+|.+|..++..|+..|+++|+++|-+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~   38 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA   38 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            345799999999999999999999998889998864

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=89.55  E-value=1.7  Score=44.33  Aligned_cols=32  Identities=38%  Similarity=0.552  Sum_probs=26.9

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|+|.| .|.||.++++.|+..| .+++++|..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   34 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNL   34 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCC
Confidence            4799998 5999999999999999 467777743

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=89.51  E-value=0.31  Score=51.71  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+....||.|||+|.+|..++..|+..|...++++|.|
T Consensus        10 ~~~~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           10 TVIMRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34455799999999999999999999999569999854

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=89.51  E-value=0.51  Score=47.41  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .++|+|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~   37 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSP   37 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCC
Confidence            45789998 79999999999999984 678877553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.50  E-value=0.31  Score=49.60  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|+|||+|.+|+.++..|+..|. +++++|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEEC
Confidence            589999999999999999999995 6888764

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=89.46  E-value=1.1  Score=45.54  Aligned_cols=32  Identities=22%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .++|||.| .|.||.++++.|+..|. ++++++.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~r   35 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   35 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEec
Confidence            46899999 59999999999999885 4666553

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=89.46  E-value=0.36  Score=48.56  Aligned_cols=35  Identities=26%  Similarity=0.556  Sum_probs=30.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +...+|.|||+|.+|..+++.|+..|+..+.++|.
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~   42 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSR   42 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            44579999999999999999999999765777763

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=89.28  E-value=0.27  Score=49.26  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF---SNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv---~~i~iiD~D   52 (726)
                      ..+|.|||+|.+|+.+++.|+..|+   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            3589999999999999999999996   579998865

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=89.23  E-value=1.6  Score=44.64  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=26.6

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      ++|||.|+ |.||.++++.|+.. | .+++++|..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~   34 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIG   34 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCC
Confidence            37999996 99999999999998 6 467777753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=89.21  E-value=0.33  Score=50.09  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999996 68888754

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.20  E-value=0.19  Score=51.96  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..++++|+|+||+|..+++.|+..|  +++++|.
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r  158 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANR  158 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEEC
Confidence            46789999999999999999999999  8988763

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=89.06  E-value=1.3  Score=44.40  Aligned_cols=31  Identities=29%  Similarity=0.590  Sum_probs=26.0

Q ss_pred             cEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          21 KVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        21 kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +|+|.|+ |.||.++++.|. .| .+++++|.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~   33 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHS   33 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cC-CeEEEecccc
Confidence            7999996 999999999999 78 5688877543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=88.81  E-value=1.3  Score=44.33  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSR   39 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            4567888887 68999999999999996 5777764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=88.71  E-value=0.66  Score=46.40  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=25.9

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHh--CCCeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLS--GFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~--Gv~~i~iiD~   51 (726)
                      ++|+|.|+ |.||.++++.|+..  | .++.+++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r   34 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVR   34 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEES
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEc
Confidence            47999996 99999999999988  7 46777764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.69  E-value=1.8  Score=44.41  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=26.9

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +++|||.| .|+||.++++.|+..|. ++.++|.
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r   37 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY-DVVIADN   37 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEec
Confidence            46899998 69999999999999995 5777664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=88.59  E-value=1.4  Score=44.62  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   44 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRN   44 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56778899997 78999999999999996 57887744

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.59  E-value=0.39  Score=50.08  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..||+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3689999999999999999999995 58888754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.58  E-value=0.35  Score=52.12  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+..++|+|+|+|++|..+++.+..+|. +++++|.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4778999999999999999999999998 79998843

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=88.57  E-value=0.87  Score=47.72  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +||||.| .|.||..+++.|+..|.-++..+|.+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            3799999 69999999999999997567776654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=88.55  E-value=0.39  Score=51.17  Aligned_cols=34  Identities=38%  Similarity=0.715  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      ...||.|+|+|.+|..++..|+..|+ ++|.++|.
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~   42 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            45689999999999999999999998 58999985

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=88.51  E-value=0.33  Score=51.39  Aligned_cols=35  Identities=31%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...||.|||+|.+|+.++-.|+..|+++++++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            35689999999999999999999999889999865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.49  E-value=0.48  Score=50.18  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..|...+|.|||+|.+|..+++.|...|+ ++.+.|.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~   47 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLR   47 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEEC
Confidence            46788999999999999999999999996 5777664

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.49  E-value=0.44  Score=46.95  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=28.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|.+|..+++.|+..|. +++++|.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3689999999999999999999996 57787743

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=88.41  E-value=0.45  Score=47.00  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ....|+|||+|..|++.|..|++.|. +++|+|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            35689999999999999999999997 58898875

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.37  E-value=0.79  Score=47.79  Aligned_cols=35  Identities=29%  Similarity=0.590  Sum_probs=28.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~   41 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIR   41 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4567899998 58999999999999996 57777643

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.21  E-value=0.41  Score=49.91  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=27.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..||+|||+|++|+.++..|+ .| .++++++.+
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r~   33 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY-HDVTVVTRR   33 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT-SEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC-CceEEEECC
Confidence            468999999999999999999 88 467777643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=88.21  E-value=0.43  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++..|+..|..+++++|.|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998559999865

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=88.16  E-value=0.47  Score=50.80  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=32.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ...|+|||+|..|+..|-.|++.|..+++|+|.+.+
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            457999999999999999999999878999998766

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.06  E-value=0.4  Score=51.26  Aligned_cols=35  Identities=34%  Similarity=0.577  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|++|..++..|..+|. +++++|.+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~  199 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN  199 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            567899999999999999999999999 89998743

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.04  E-value=0.4  Score=51.36  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            678899999999999999999999998 7888874

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=88.02  E-value=1.4  Score=45.21  Aligned_cols=36  Identities=25%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCC------CeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGF------SNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv------~~i~iiD~D   52 (726)
                      +..++|||.| .|+||.++++.|+..|.      .+++++|.+
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            4556899999 69999999999999994      578887754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=88.01  E-value=0.48  Score=47.43  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=27.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|.|||+|.+|+.++..|+..|..+++++|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r   32 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECC
Confidence            7999999999999999999999656777763

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.00  E-value=0.38  Score=54.08  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|+|+|+||..+++.|+..|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567899999999999999999999998 78888754

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=87.99  E-value=0.47  Score=50.58  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+|+|||+|..|+.+|..|++.|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            46899999999999999999999987799999754

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=87.93  E-value=1.3  Score=44.53  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=27.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      =..++|||.| .|.||.++++.|+..| .+++++|.+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   45 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ   45 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc
Confidence            3457899998 6999999999999998 467777754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=87.81  E-value=0.47  Score=49.59  Aligned_cols=33  Identities=45%  Similarity=0.529  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++..|+..|. ++++++|.|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            379999999999999999999995 579999865

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.80  E-value=0.48  Score=47.92  Aligned_cols=30  Identities=37%  Similarity=0.373  Sum_probs=26.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|.|||+|.+|+.+++.|+..|. +++++|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   31 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSR   31 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            79999999999999999999997 6777764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=87.70  E-value=0.52  Score=49.17  Aligned_cols=36  Identities=28%  Similarity=0.480  Sum_probs=31.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|.+|+.+|-.|++.|. +++|+|.+.+-
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4579999999999999999999996 69999987653

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=87.69  E-value=1.2  Score=44.52  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=26.5

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|||.| .|.||.++++.|+..|. ++++++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            3799999 59999999999999884 6777775

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=87.59  E-value=0.42  Score=49.14  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..++++|+| +||+|..+++.|+..|.. ++++|.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R  151 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGR  151 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            4678999999 999999999999999976 888874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=87.50  E-value=1.4  Score=44.68  Aligned_cols=37  Identities=22%  Similarity=0.419  Sum_probs=26.8

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+..++++|.| .||||.++++.|+..|.. +.++|.+
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~   57 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARD   57 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            345667788887 689999999999999964 7777643

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=87.49  E-value=0.51  Score=50.26  Aligned_cols=34  Identities=26%  Similarity=0.532  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ..||.|||+|.+|+.++..|+..|+ ++|+++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            4689999999999999999999997 589999853

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=87.47  E-value=0.53  Score=49.18  Aligned_cols=36  Identities=25%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|.+|+.+|..|++.|.. ++|+|.+.+-
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            46899999999999999999999975 9999987543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=87.36  E-value=0.38  Score=49.86  Aligned_cols=35  Identities=29%  Similarity=0.460  Sum_probs=31.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+|+|||+|..|..+|..|++.|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            45799999999999999999999975799999764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=87.35  E-value=0.43  Score=53.31  Aligned_cols=40  Identities=23%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC--CeEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGF--SNIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv--~~i~iiD~D~I   54 (726)
                      ++|.+.||++.|+|+.|+.+++.|+..|+  ++|.++|..-+
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS  256 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence            36888999999999999999999999999  79999997654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.35  E-value=0.46  Score=50.04  Aligned_cols=36  Identities=33%  Similarity=0.611  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      +...||.|||+|.+|..++-.|+..|. .+|.++|-+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            456799999999999999999999986 679999854

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=87.31  E-value=0.45  Score=51.09  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .+...||.|||+ |.+|..++-.|+..|. .+|.++|-+
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            356789999997 9999999999999997 589999854

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=87.18  E-value=2.4  Score=46.56  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=27.3

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCC--CeEEEEeC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGF--SNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv--~~i~iiD~   51 (726)
                      ..++|||.| .|+||.++++.|+..+-  .++.+++.
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R  108 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR  108 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            467899999 59999999999999831  46777663

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.17  E-value=0.58  Score=47.47  Aligned_cols=32  Identities=41%  Similarity=0.572  Sum_probs=27.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      ++|.|||+|.+|..+++.|+..|.. ++.++|.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~   34 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            4799999999999999999999963 6777764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=87.14  E-value=0.51  Score=49.62  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      .||.|||+|+||..++-.|+..|. ++|.|+|-
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di   33 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            489999999999999999999886 78999983

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=87.09  E-value=0.56  Score=49.78  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +.....+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            44567799999999999999999999997 599999764

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=87.00  E-value=1.3  Score=44.67  Aligned_cols=34  Identities=38%  Similarity=0.618  Sum_probs=27.5

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          19 KSKVLVVGA-GGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGa-GgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      +++|||.|+ |.||.++++.|+.. |-.+++++|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   37 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIR   37 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            468999996 99999999999998 32468887754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.94  E-value=0.52  Score=49.39  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC---CeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGF---SNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv---~~i~iiD~D   52 (726)
                      +...+|.|||+|.+|+.++..|+..|+   ..++++|.+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            344689999999999999999999995   578887643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=86.93  E-value=1.7  Score=44.70  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=28.7

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r   63 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDV   63 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5677899998 68999999999999996 5777764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=86.88  E-value=0.58  Score=48.34  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=28.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999996 68887754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=86.85  E-value=0.54  Score=49.01  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|..|+.+|..|++.|. +++|+|.+.+-
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4579999999999999999999997 69999987543

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=86.81  E-value=0.53  Score=50.49  Aligned_cols=34  Identities=35%  Similarity=0.536  Sum_probs=26.4

Q ss_pred             chhhhhhhhchhhhhhccccCcchhhhHHHHHHh
Q psy9783         136 TSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALN  169 (726)
Q Consensus       136 ~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~  169 (726)
                      ....+..|||||++|...++|++|+.++++.+..
T Consensus       150 ~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~  183 (353)
T 3h5n_A          150 NDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLK  183 (353)
T ss_dssp             CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             CCcCcccccccccCCChHHCCChHHHHHHHHHHH
Confidence            3445677888888888888888888888777754

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=86.79  E-value=0.61  Score=46.30  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=30.6

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|.| .||||.++++.|+..|...+.++|.+
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~   39 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecC
Confidence            4567899997 78999999999999998778888743

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=86.78  E-value=0.6  Score=47.75  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=29.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+|.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            589999999999999999999995 688887653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=86.70  E-value=0.59  Score=49.12  Aligned_cols=33  Identities=30%  Similarity=0.633  Sum_probs=28.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|+.++..|+..|. ++++++|.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            379999999999999999999995 478888754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=86.62  E-value=0.58  Score=45.23  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=26.7

Q ss_pred             cEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||+|+| +|.+|+.+++.|+..|. +++++|.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r   32 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSR   32 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            799999 99999999999999995 6777764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=86.41  E-value=0.42  Score=49.62  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            3579999999999999999999997 5999998754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=86.31  E-value=0.56  Score=47.89  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=28.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3589999999999999999999996 68887753

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.24  E-value=0.43  Score=47.77  Aligned_cols=36  Identities=39%  Similarity=0.595  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcC-c-hHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-G-GIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-G-giGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.|+ | |||.++++.|+..|.. +.++|.+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~   56 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYH   56 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCC
Confidence            367889999998 7 8999999999999964 7787754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=86.18  E-value=0.64  Score=48.35  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .-.+|.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            34689999999999999999999996 688888653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.18  E-value=0.77  Score=43.81  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +||+|.|+ |+||.++++.|+..| .++++++.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~   33 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRN   33 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcC
Confidence            37999995 999999999999999 467777643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.10  E-value=0.67  Score=48.68  Aligned_cols=33  Identities=39%  Similarity=0.577  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .+|.|||+|.+|..+++.|...|.. ++.++|.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            6899999999999999999999974 78887744

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=86.10  E-value=2.5  Score=43.07  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=26.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEE-EEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIE-IVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~-iiD~D   52 (726)
                      .||+|+|||.+|..+++.+...+- .|. ++|.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~   36 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENT   36 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecC
Confidence            589999999999999999998875 554 35543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=86.09  E-value=0.63  Score=48.08  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            689999999999999999999997 58888754

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=85.97  E-value=0.64  Score=48.85  Aligned_cols=32  Identities=19%  Similarity=0.503  Sum_probs=29.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||.|||+|.+|..++-.|+..|+++|.++|-+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~   32 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART   32 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            69999999999999999999999669999854

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=85.91  E-value=0.72  Score=45.84  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|+|||+|..|...|..|++.|+ +++|+|..
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   34 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAG   34 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            579999999999999999999996 79999965

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=85.89  E-value=0.42  Score=50.13  Aligned_cols=47  Identities=13%  Similarity=0.065  Sum_probs=34.5

Q ss_pred             ccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783           6 PGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus         6 ~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+.+..-.-...+|.|||+|.+|..++++|+..|..+++++|.+
T Consensus        11 ~~~~~~~~~~~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           11 VDLGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             ----CCCHHHHTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             cccCcccCcccccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34555555433345789999999999999999999995578888855

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=85.87  E-value=0.56  Score=49.80  Aligned_cols=35  Identities=23%  Similarity=0.520  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ...+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            45689999999999999999999997 799999763

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=85.81  E-value=0.66  Score=48.37  Aligned_cols=34  Identities=32%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ..|+|||+|.+|+.+|..|++.|. +++|+|.+.+
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            479999999999999999999996 5999998754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=85.70  E-value=0.72  Score=48.18  Aligned_cols=31  Identities=29%  Similarity=0.567  Sum_probs=25.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIV   49 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~ii   49 (726)
                      ...||+|||+|++|+.++..|+..|. .++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            56789999999999999999999995 56554

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=85.70  E-value=0.88  Score=47.26  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             ccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783         192 YFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY  231 (726)
Q Consensus       192 ~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~  231 (726)
                      .+.++|+||+++. .++-...-..|.++++|+|- ||.|+
T Consensus        70 ll~~~DVVIDfT~-p~a~~~~~~~al~~G~~vVi-gTTG~  107 (272)
T 4f3y_A           70 VCAEADYLIDFTL-PEGTLVHLDAALRHDVKLVI-GTTGF  107 (272)
T ss_dssp             HHHHCSEEEECSC-HHHHHHHHHHHHHHTCEEEE-CCCCC
T ss_pred             HhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence            4557899999984 45555566789999999885 66665

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=85.66  E-value=0.69  Score=49.17  Aligned_cols=37  Identities=22%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..|.+++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            35788999999999999999999999987 57777754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=85.63  E-value=0.64  Score=49.32  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|..++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  181 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSR  181 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECC
Confidence            4778899999999999999999999885 5777764

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=85.62  E-value=1.4  Score=43.74  Aligned_cols=32  Identities=28%  Similarity=0.567  Sum_probs=26.6

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|+|.|+ |+||.++++.|+..| .+++++|.+
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   35 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIV   35 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSS
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCC
Confidence            47999996 999999999999988 467776643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=85.61  E-value=0.64  Score=47.97  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      -|+|||+|..|+.+|..|++.|+. ++|+|.
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~-V~v~Er   35 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLK-TLMIEK   35 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            499999999999999999999985 888885

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=85.57  E-value=0.67  Score=47.89  Aligned_cols=30  Identities=33%  Similarity=0.458  Sum_probs=27.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||.|||+|.+|+.++..|+..|. +++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            79999999999999999999995 6888775

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=85.57  E-value=0.73  Score=48.45  Aligned_cols=33  Identities=30%  Similarity=0.606  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++..|+..|. ++|.++|-+
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            689999999999999999999885 689999854

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=85.54  E-value=0.66  Score=48.87  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|. ++..+|.
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDI  173 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4778999999999999999999999995 5777763

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.51  E-value=0.66  Score=47.76  Aligned_cols=34  Identities=18%  Similarity=0.505  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~   51 (726)
                      ...+|.|||+|.+|..+++.|+..|+.  +++++|.
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr   37 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNR   37 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeC
Confidence            357899999999999999999999962  6888764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=85.51  E-value=0.74  Score=48.89  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++..+|.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4788999999999999999999998886 5777764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=85.49  E-value=3.2  Score=41.93  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.++.++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            46778899998 68999999999999996 58888865

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=85.45  E-value=0.68  Score=48.53  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            4788999999999999999999999997 57787754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=85.44  E-value=0.75  Score=48.62  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=29.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++..|+..|...+.++|-|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            589999999999999999999998559999854

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=85.42  E-value=2.8  Score=42.64  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=28.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .+.++.++|.| .||||.++++.|+..|. ++.++|
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   60 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITG   60 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEe
Confidence            34567788887 68999999999999996 577776

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=85.39  E-value=0.77  Score=48.60  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=31.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .+||+|||+|.-|...|+.|.+.|-+ +|+|||..
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~   36 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN   36 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCC
Confidence            58999999999999999999999975 89999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=85.39  E-value=0.64  Score=47.33  Aligned_cols=31  Identities=32%  Similarity=0.522  Sum_probs=27.5

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            79999999999999999999996 58887754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=85.36  E-value=0.55  Score=49.91  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5788999999999999999999998886 6777774

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=85.28  E-value=0.75  Score=48.38  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +...+|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            345789999999999999999999996 699998654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=85.22  E-value=0.77  Score=48.07  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ...||.|||+|.+|+.++..|+..|. +++++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            45789999999999999999999995 6777763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=85.09  E-value=0.65  Score=50.62  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|++|..+++.+..+|. +++++|..
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~  204 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTR  204 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            557899999999999999999999997 79998854

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=85.08  E-value=0.82  Score=46.71  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=28.2

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+++|||.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   36 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRR   36 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            4678999996 9999999999999994 67777643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=85.01  E-value=0.76  Score=48.36  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +.+|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3589999999999999999999997 489998654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=84.95  E-value=0.6  Score=49.41  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|.|||+|.+|..+++.|...|+ ++.++|..
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  187 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGR  187 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4778899999999999999999999887 58888843

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=84.92  E-value=0.65  Score=49.18  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=31.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      +..|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            3589999999999999999999998 6999998753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=84.86  E-value=0.56  Score=47.77  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|..|+.+|..|++.|+ +++|+|..
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~   35 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAE   35 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC-CEEEECCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            4589999999999999999999997 59999865

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=84.85  E-value=0.78  Score=45.88  Aligned_cols=32  Identities=19%  Similarity=0.466  Sum_probs=28.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC---CeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF---SNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv---~~i~iiD~   51 (726)
                      .||.|||+|.+|..+++.|+..|.   .+++++|.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r   37 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL   37 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence            589999999999999999999997   37777764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=84.82  E-value=0.74  Score=49.83  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |..++|+|+|+|.+|..+++.|...|. ++++.|.|
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~  205 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVN  205 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            677899999999999999999999998 57788843

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=84.81  E-value=2.4  Score=43.28  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh-CCCeEEEEeC
Q psy9783          21 KVLVVGA-GGIGCELLKNLVLS-GFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGa-GgiGceiaknLal~-Gv~~i~iiD~   51 (726)
                      ||+|+|| |.+|..+++.+... |+.=+-++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            7999997 99999999998866 7654456664

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=84.80  E-value=0.73  Score=49.19  Aligned_cols=38  Identities=21%  Similarity=0.520  Sum_probs=31.9

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ......||.|||+|.+|..++-.|+..|. .++.++|-+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            35567899999999999999999999997 479999853

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=84.78  E-value=0.77  Score=49.71  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            589999999999999999999997 699999764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=84.77  E-value=0.77  Score=47.09  Aligned_cols=33  Identities=21%  Similarity=0.490  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...|+|||+|..|+.+|..|++.|. +++|+|.+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~   36 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAA   36 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3579999999999999999999997 69999987

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=84.68  E-value=0.76  Score=48.24  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|..++|.|||+|.||..+++.|...|. ++..+|.
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDP  173 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5788999999999999999999999885 5777764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=84.65  E-value=3.1  Score=44.56  Aligned_cols=30  Identities=27%  Similarity=0.286  Sum_probs=24.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ++|||.|+ |+||.++++.|+..|. ++.+++
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~  100 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFI  100 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEE-EEEEEE
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCC-EEEEEE
Confidence            37999995 9999999999977774 566654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=84.57  E-value=0.89  Score=48.60  Aligned_cols=33  Identities=21%  Similarity=0.471  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      ..||.|||+|.+|..++-.|+..|+ +++.++|-
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di   54 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDV   54 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            4689999999999999999999998 68999985

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=84.50  E-value=0.9  Score=47.61  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++-.|+..|.-.+.++|-|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            589999999999999999999997459999854

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=84.49  E-value=0.77  Score=46.82  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=28.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.+++.|+..|. ++.++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            589999999999999999999996 57887754

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=84.46  E-value=0.67  Score=52.15  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=27.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+.+++++|+|+||+|..+++.|+..|+ ++++++.
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R  395 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANR  395 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC--CEEEES
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3567899999999999999999999998 7888764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=84.42  E-value=0.93  Score=44.39  Aligned_cols=35  Identities=31%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46778999985 8999999999999996 57777643

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=84.42  E-value=0.66  Score=50.03  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|..++..+|.
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~  196 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY  196 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECS
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            478899999999999999999999888765877774

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=84.40  E-value=0.73  Score=48.78  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..|.+++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~  171 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRS  171 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            34778999999999999999999998887 57777753

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=84.33  E-value=0.81  Score=48.19  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|.|||+|.||..+++.|...|. ++..+|..
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4788999999999999999999999886 68888754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=84.27  E-value=0.78  Score=47.66  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~   41 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRS   41 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35689999999999999999999997 57787754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=84.26  E-value=0.85  Score=48.40  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+|+|||+|..|+.+|..|++.|+ +++|+|...
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            4689999999999999999999997 699998754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=84.18  E-value=0.83  Score=45.73  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .++|||.|+|.||.++++.|...|. +++.++.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r   36 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSR   36 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEES
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEc
Confidence            4789999999999999999999985 5777653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=84.16  E-value=0.92  Score=51.38  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+++|||.|.||+|++..|++.|.. +||+..+.
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~-VTii~~~~  256 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYD-VTVAVRSI  256 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCC-EEEEESSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCe-EEEecccc
Confidence            6899999999999999999999975 78876543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=84.16  E-value=0.93  Score=48.18  Aligned_cols=36  Identities=25%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~  177 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPY  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4788999999999999999999998886 47787754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=84.13  E-value=0.94  Score=48.40  Aligned_cols=35  Identities=23%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D~   53 (726)
                      +++|+|||+|..|...|..|.+.|.. +|+|+|...
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            36899999999999999999999985 899999765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=84.10  E-value=0.78  Score=47.98  Aligned_cols=34  Identities=18%  Similarity=0.479  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            34589999999999999999999996 58887754

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=84.03  E-value=1  Score=44.10  Aligned_cols=35  Identities=34%  Similarity=0.447  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999985 9999999999999996 57887743

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=84.03  E-value=0.67  Score=46.85  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=26.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|.|||+|.+|+.+++.|+. |. +++++|.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeC
Confidence            479999999999999999999 86 4777764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=84.03  E-value=0.47  Score=49.73  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC------CeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF------SNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv------~~i~iiD~D   52 (726)
                      ..||.|||+|.+|+.++..|+..|.      .+++++|.+
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~   47 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFE   47 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcC
Confidence            3589999999999999999999993      468888754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.01  E-value=0.35  Score=47.78  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=28.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.|
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~   40 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDE   40 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECC
Confidence            35689999999999999999999887  8898865

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=84.00  E-value=0.98  Score=45.63  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+..++|||.|+ |.||.++++.|+..|. +++++|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            356789999997 9999999999999995 677776543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=83.96  E-value=0.98  Score=47.58  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ..|+|||+|.+|+.+|..|++.|.. ++|+|...+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~-V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHR-VLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCC
Confidence            5799999999999999999999974 999997754

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=83.96  E-value=0.83  Score=48.48  Aligned_cols=36  Identities=25%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~  178 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVF  178 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5788999999999999999999998886 47787754

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=83.88  E-value=0.98  Score=47.32  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=29.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .||.|+|+|.+|..++..|+..|.. +++++|-+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~   34 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            3799999999999999999999974 89998854

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=83.85  E-value=0.73  Score=49.13  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|.|||+|.+|..+++.|...|. ++.++|..
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~  196 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRS  196 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4778899999999999999999998886 57887754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=83.75  E-value=0.82  Score=47.29  Aligned_cols=32  Identities=34%  Similarity=0.625  Sum_probs=28.9

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.||| +|.+|..+++.|+..|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5899999 99999999999999997 68888855

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=83.73  E-value=0.97  Score=50.35  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=31.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH---hCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVL---SGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal---~Gv~~i~iiD~D~I   54 (726)
                      ..+|+|||+|..|+.+|-.|++   .|+ +++|||.+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            4689999999999999999999   897 7999998754

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=83.72  E-value=0.61  Score=47.39  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .+|.|||+|.+|+.+++.|+..|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            489999999999999999999996 678877

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=83.60  E-value=0.97  Score=46.15  Aligned_cols=31  Identities=19%  Similarity=0.517  Sum_probs=27.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|.|||+ |.+|+.+++.|+..|. +++++|.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r   43 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEI   43 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            48999999 9999999999999996 6777763

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=83.56  E-value=1.7  Score=43.18  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             cEEEEcC-chHHHHHHHHHHHh--CCCeEEEEeC
Q psy9783          21 KVLVVGA-GGIGCELLKNLVLS--GFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGa-GgiGceiaknLal~--Gv~~i~iiD~   51 (726)
                      +|+|.|+ |+||.++++.|+..  |. ++++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r   33 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVR   33 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEES
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEc
Confidence            5899996 99999999999988  74 6777774

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=83.54  E-value=0.97  Score=47.38  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=28.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..++|.|||+|-+|+-+|.+|+ +|+ .++++|.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~   42 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDV   42 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEEC
Confidence            4679999999999999999999 997 6888874

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=83.50  E-value=0.83  Score=46.38  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=34.5

Q ss_pred             chhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCC
Q psy9783         136 TSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDA  174 (726)
Q Consensus       136 ~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~  174 (726)
                      ...++..|||||++|...++|++|+..+++.+...||++
T Consensus        63 ~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~  101 (249)
T 1jw9_B           63 FDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHI  101 (249)
T ss_dssp             CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTS
T ss_pred             CCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCc
Confidence            345677899999999999999999999999999999874

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=83.46  E-value=1  Score=47.65  Aligned_cols=33  Identities=27%  Similarity=0.533  Sum_probs=29.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|+|+|.+|..++..|+..|+ ++++++|-+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   34 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIK   34 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCc
Confidence            479999999999999999999997 589999854

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=83.44  E-value=1.1  Score=47.22  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=30.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ..||.|||+|.+|..++-.|+..|. ++|.++|-|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999886 689999965

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=83.42  E-value=1.6  Score=43.43  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=27.2

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHH---hCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVL---SGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal---~Gv~~i~iiD~   51 (726)
                      |.+++++|.| .||||.++++.|+.   .|. ++.++|.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r   41 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSAR   41 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEES
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeC
Confidence            4556777777 78999999999998   786 6777764

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=83.32  E-value=0.9  Score=47.63  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=32.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH-hCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVL-SGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal-~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|..|+.+|..|++ .|.-+++|+|.+.+-
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~   58 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA   58 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            4579999999999999999999 994479999987654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=83.30  E-value=0.82  Score=45.10  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=26.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEE-Ee
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEI-VD   50 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~i-iD   50 (726)
                      -.||.|||+|.+|..+++.|+..|. ++++ +|
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~   54 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANS   54 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            3689999999999999999999997 3554 44

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=83.29  E-value=0.96  Score=48.15  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  172 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRS  172 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            5788999999999999999999998887 57777754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=83.19  E-value=1.1  Score=47.77  Aligned_cols=93  Identities=8%  Similarity=0.036  Sum_probs=52.3

Q ss_pred             cccccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccce-EEEEeCCCCcceecCCCCCCCCCCCccccCCC
Q psy9783         191 NYFKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEGQ-VELIKKGETKCYECDPKPAAKTYPGCTIRNTP  266 (726)
Q Consensus       191 ~~~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G~-v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p  266 (726)
                      +-++++|+|+.|+ .+.+....+=+-.-.+-.  -+|.+.|.++.-. +.-..++...|...++-.+..-.|..-|-..+
T Consensus        83 ~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~  162 (319)
T 3ado_A           83 EAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHP  162 (319)
T ss_dssp             HHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECT
T ss_pred             hHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCC
Confidence            3478899999985 566665544443333322  2677777765321 00001111234445554444455666666667


Q ss_pred             CCcchhhhhHhHHhHHH
Q psy9783         267 SEPIHCIVWAKHLFNYL  283 (726)
Q Consensus       267 ~~~~h~i~~a~~lf~~l  283 (726)
                      .+....+..+..++..+
T Consensus       163 ~Ts~~~~~~~~~~~~~~  179 (319)
T 3ado_A          163 ETSPATVDRTHALMRKI  179 (319)
T ss_dssp             TCCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHh
Confidence            77777788877776655

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=83.18  E-value=0.83  Score=48.24  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|..++|.|||+|.||..+++.|...|. ++..+|.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            4788999999999999999999998884 6777764

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=83.16  E-value=2.3  Score=42.76  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r   43 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYH   43 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEec
Confidence            5677888888 68999999999999996 4666653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=83.13  E-value=0.92  Score=46.33  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999995 58888755

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=83.08  E-value=0.91  Score=48.94  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|++|..+++.+..+|. +++++|..
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~  204 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVR  204 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            568899999999999999999999998 58888854

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=82.94  E-value=1.1  Score=47.16  Aligned_cols=33  Identities=30%  Similarity=0.568  Sum_probs=28.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      +.||.|||+|.+|..++-.|+..|. .+|.++|-
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di   38 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            3689999999999999999999885 57888884

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=82.80  E-value=0.93  Score=51.80  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      +....|+|||+|..|+.+|-.|++.|+ +++|+|.+.+
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~~   57 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSAF   57 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCCC
Confidence            456789999999999999999999997 7999998754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=82.77  E-value=1.2  Score=44.02  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~   46 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLD   46 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4677899997 69999999999999996 68887643

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=82.68  E-value=0.98  Score=50.86  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=31.3

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +..++|+|+|+|.||..+++.|...|. ++.++|.+
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467899999999999999999999997 78888865

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=82.68  E-value=1.2  Score=47.89  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++..+|..
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~  180 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVA  180 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            4788999999999999999999998886 57777754

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=82.66  E-value=1.3  Score=44.23  Aligned_cols=36  Identities=25%  Similarity=0.420  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   45 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN   45 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46788899998 58999999999999997 58887743

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=82.64  E-value=0.88  Score=48.76  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|..++|.|||+|.||..+|+.|...|+ ++...|.
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr  202 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNR  202 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            5788999999999999999999998886 5777764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=82.61  E-value=1.2  Score=46.65  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|+.++..|+..|. .+++++|.|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            379999999999999999998764 479999865

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=82.55  E-value=1.2  Score=44.64  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=29.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|..|...|..|++.|.. ++|+|.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~-v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLK-TLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCc-EEEEecc
Confidence            35899999999999999999999975 9999976

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=82.55  E-value=0.91  Score=48.51  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHH-HhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLV-LSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLa-l~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|. ..|. ++.++|.
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~  195 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDV  195 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECC
Confidence            478899999999999999999998 7886 6777774

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=82.54  E-value=0.94  Score=49.84  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHH---hCCCeEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVL---SGFSNIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal---~Gv~~i~iiD~D~I   54 (726)
                      .+|+|||+|..|+.+|-.|++   .|+ +++|||.+.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~-~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRI-DVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGS-EEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCC-EEEEEecCCC
Confidence            579999999999999999999   998 7999998754

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=82.54  E-value=4.8  Score=40.61  Aligned_cols=32  Identities=38%  Similarity=0.539  Sum_probs=25.9

Q ss_pred             cEEEEc-CchHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          21 KVLVVG-AGGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVG-aGgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      +|||.| .|+||.++++.|+.. |-.++.++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   34 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV   34 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESS
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            589998 599999999999998 32468887743

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=82.52  E-value=0.86  Score=50.86  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..+.+++|.|||+|.+|+.++.+|+..|+ +++++|.
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r   46 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNR   46 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeC
Confidence            45778899999999999999999999997 5777764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=82.51  E-value=1.2  Score=48.64  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+|+|+|+|-+|..+++.|...|+ .+++||.|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d   36 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHD   36 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            4579999999999999999999996 59999977

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=82.44  E-value=1  Score=47.26  Aligned_cols=36  Identities=33%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|.|||+|.||..+++.|...|. ++..+|..
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~  156 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT  156 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4788999999999999999999998886 57777753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=82.42  E-value=1.1  Score=46.49  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=30.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhC-----CCeEEEEeCCcc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSG-----FSNIEIVDLDTI   54 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~G-----v~~i~iiD~D~I   54 (726)
                      .|+|||+|.+|+.+|-.|++.|     -.+++|+|.+.+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            6999999999999999999998     247999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=82.41  E-value=0.6  Score=49.35  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=26.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|.|||+|.+|+.++..|+..|. +++++|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            89999999999999999999884 5777764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=82.35  E-value=0.92  Score=48.62  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++..+|.
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~  199 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDP  199 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            4788999999999999999999998886 5777763

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=82.31  E-value=1.1  Score=47.38  Aligned_cols=34  Identities=26%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+|+|||+|..|+.+|..|++.|+. ++|+|.+.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~-V~viE~~~   39 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHR-VVVVEQAR   39 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence            35799999999999999999999975 89998763

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=82.31  E-value=1.2  Score=49.94  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH---hCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVL---SGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal---~Gv~~i~iiD~D~I   54 (726)
                      ..+|+|||+|..|+.+|..|++   .|+ +++|||.+.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            4679999999999999999999   786 7999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=82.19  E-value=1.2  Score=45.00  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.6

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+|||+|..|...|..|++.|..+++|+|.+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            69999999999999999999998579999976

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=82.17  E-value=0.77  Score=49.38  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=33.4

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC-CccC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL-DTID   55 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~-D~Ie   55 (726)
                      +....|+|||+|..|+.+|..|++.|..+++|+|. +.+-
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~   60 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG   60 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC
Confidence            34568999999999999999999999448999998 6653

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=82.14  E-value=1  Score=48.39  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ..|.+++|.|||+|.||..+++.|...|. ++..+|
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d  190 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWG  190 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEC
Confidence            35788999999999999999999998886 566666

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=82.14  E-value=1.1  Score=52.75  Aligned_cols=36  Identities=31%  Similarity=0.698  Sum_probs=32.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ...|+|||+|.+|+.+|..|++.|..+++|+|.+.+
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            468999999999999999999999867999998765

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=82.08  E-value=1.1  Score=44.98  Aligned_cols=29  Identities=21%  Similarity=0.257  Sum_probs=25.4

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +|.|||+|.+|+.+++.|+..|+ ++++.|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            79999999999999999999996 566644

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=82.07  E-value=0.87  Score=46.04  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..|.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            457788899998 78999999999999996 48888864

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=82.05  E-value=3  Score=45.18  Aligned_cols=35  Identities=6%  Similarity=0.185  Sum_probs=28.7

Q ss_pred             cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEcc
Q psy9783         193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGT  228 (726)
Q Consensus       193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~  228 (726)
                      +.++|+|+.|+....++.+...+ .+.+..+|+...
T Consensus        62 ~~~~Dvvf~a~~~~~s~~~a~~~-~~~G~~vIDlSa   96 (366)
T 3pwk_A           62 FEGVDIALFSAGSSTSAKYAPYA-VKAGVVVVDNTS   96 (366)
T ss_dssp             TTTCSEEEECSCHHHHHHHHHHH-HHTTCEEEECSS
T ss_pred             hcCCCEEEECCChHhHHHHHHHH-HHCCCEEEEcCC
Confidence            57899999999999988887765 567888887664

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=82.03  E-value=1.5  Score=46.50  Aligned_cols=33  Identities=27%  Similarity=0.620  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~  175 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG  175 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4899999999999999999999996 69998754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=82.03  E-value=1.1  Score=49.42  Aligned_cols=36  Identities=17%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|.+|+.+|..|++.|.. ++|+|.+.+-
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~-V~llE~~~~~   38 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLS-VLMLEAQDLA   38 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCC-EEEEECCCCC
Confidence            45799999999999999999999975 9999986553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=81.98  E-value=1.1  Score=45.35  Aligned_cols=36  Identities=31%  Similarity=0.505  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++|+|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~   61 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS   61 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            367788999985 8999999999999996 58887753

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=81.97  E-value=1.4  Score=42.90  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=27.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|+|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~   34 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRG   34 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            36899985 9999999999999995 68888764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=81.95  E-value=1.3  Score=45.01  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=27.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      ..+|.|||+|.+|..+++.|+..|.+ ++.++|.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~   39 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR   39 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcC
Confidence            46899999999999999999999753 5777663

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=81.92  E-value=1.1  Score=49.01  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|.+|..+++.|..+|. +++++|..
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~  216 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVR  216 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467899999999999999999999998 69998855

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=81.90  E-value=0.84  Score=47.78  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHh-CCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLS-GFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~-Gv~~i~iiD~   51 (726)
                      ....+|.|||+|.+|..++++|... |+.++.++|.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr  168 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR  168 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            3567899999999999999999988 8888998763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=81.88  E-value=1.3  Score=47.66  Aligned_cols=36  Identities=19%  Similarity=0.506  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      -+...+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~   54 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLN   54 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3556899999999999999999999994 68888754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=81.82  E-value=0.93  Score=45.35  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|.|||+|.+|..+++.|...| ..+.++|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~   34 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGS   34 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECC
Confidence            58999999999999999999988 46777764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=81.76  E-value=1.4  Score=43.86  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            46778899998 68999999999999996 6777764

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=81.75  E-value=1.7  Score=45.58  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=29.5

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY  231 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~  231 (726)
                      +++.++|+||+++. +.+-...-..|.++++|+| .||.|+
T Consensus        84 ~ll~~aDVvIDFT~-p~a~~~~~~~~l~~Gv~vV-iGTTG~  122 (288)
T 3ijp_A           84 SAFSNTEGILDFSQ-PQASVLYANYAAQKSLIHI-IGTTGF  122 (288)
T ss_dssp             HHTTSCSEEEECSC-HHHHHHHHHHHHHHTCEEE-ECCCCC
T ss_pred             HHhcCCCEEEEcCC-HHHHHHHHHHHHHcCCCEE-EECCCC
Confidence            34568999999984 4555556678999999999 566676

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=81.74  E-value=1.2  Score=48.38  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++.+.|.
T Consensus       113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~  147 (380)
T 2o4c_A          113 DLAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDP  147 (380)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECH
T ss_pred             ccCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            5789999999999999999999999886 5777764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=81.73  E-value=0.85  Score=46.22  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ...+|+|||+|..|...|..|++.|+. ++|+|...
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~-v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIK-PILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            456899999999999999999999975 89998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=81.71  E-value=1.8  Score=46.42  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~  178 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIIL  178 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcC
Confidence            6899999999999999999999995 68888754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=81.67  E-value=0.81  Score=48.74  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC------CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF------SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv------~~i~iiD~D   52 (726)
                      .||.|||+|.+|+.++..|+..|.      .+++++|.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~   60 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRD   60 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECC
Confidence            479999999999999999999992      468888754

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=81.56  E-value=3.8  Score=46.93  Aligned_cols=36  Identities=25%  Similarity=0.493  Sum_probs=28.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHh-CCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLS-GFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~-Gv~~i~iiD~D   52 (726)
                      .+..++|+|.| .|+||.++++.|+.. |. +++++|..
T Consensus       312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~  349 (660)
T 1z7e_A          312 ARRRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIG  349 (660)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESC
T ss_pred             hccCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcC
Confidence            34667899999 599999999999998 64 68887754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=81.45  E-value=1.1  Score=49.77  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|.|||+|.+|+.++..|+..|+ .++++|.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~   69 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESD   69 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999996 68888754

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=81.38  E-value=1.4  Score=43.59  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=29.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5567899997 68999999999999995 68887753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=81.37  E-value=1.4  Score=46.76  Aligned_cols=33  Identities=39%  Similarity=0.731  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      ..||.|||+|.+|..++-.|+..|. .+|.++|-
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            3689999999999999999998885 57888884

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=81.31  E-value=1.3  Score=48.25  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++...|.
T Consensus       116 ~l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~  150 (381)
T 3oet_A          116 SLRDRTIGIVGVGNVGSRLQTRLEALGI-RTLLCDP  150 (381)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECH
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            4788999999999999999999999987 5777764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=81.28  E-value=1.5  Score=43.75  Aligned_cols=36  Identities=31%  Similarity=0.541  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46678899998 68999999999999996 57887753

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=81.26  E-value=1.2  Score=43.76  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            46778889888 58999999999999996 58887754

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=81.19  E-value=1.4  Score=43.89  Aligned_cols=35  Identities=34%  Similarity=0.619  Sum_probs=29.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4567899997 78999999999999996 68887754

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=82.05  E-value=0.31  Score=47.98  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +...+|.|||+|.+|..+++.|...|. +++++|.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~-~V~~~~r   50 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGY-SVVFGSR   50 (201)
Confidence            667799999999999999999999985 4666654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=81.07  E-value=1.3  Score=49.28  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.||.|||+|.+|+.++..|+..|. +++++|.|
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~   40 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVD   40 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            36799999999999999999999996 58888865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.01  E-value=0.61  Score=51.78  Aligned_cols=41  Identities=37%  Similarity=0.566  Sum_probs=33.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN   60 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLn   60 (726)
                      ..||+|+|+|-+|..+++.|...| ..+++||.|.=....+.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~-~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGEN-NDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTT-EEEEEEESCHHHHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHH
Confidence            458999999999999999999888 46999998854444443

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=80.95  E-value=1.5  Score=42.93  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=27.9

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCC------eEEEEeC
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFS------NIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~------~i~iiD~   51 (726)
                      +++|+|.| .||||.++++.|+..|..      ++.++|.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r   41 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR   41 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeC
Confidence            45788887 789999999999999985      7888774

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=80.94  E-value=0.88  Score=46.95  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 588887543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=80.88  E-value=1.2  Score=47.81  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=28.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3589999999999999999999995 57777643

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=80.84  E-value=6.5  Score=43.57  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=27.8

Q ss_pred             cCcEEEEcCchH-HHHHHHHHHH--hCC--CeEEEEeCC
Q psy9783          19 KSKVLVVGAGGI-GCELLKNLVL--SGF--SNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgi-GceiaknLal--~Gv--~~i~iiD~D   52 (726)
                      ..||.|||+|+. |..++..|+.  .++  .+|.++|-|
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~   45 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIP   45 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcC
Confidence            458999999999 8888888887  565  579998843

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.84  E-value=1.1  Score=44.97  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++|+|.| .||||.++++.|+..|.. +.++|.+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~   62 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARD   62 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECC
Confidence            35677888888 699999999999999964 7787753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=80.79  E-value=1.4  Score=44.53  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|..|...|..|++.|+ +++|+|..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   39 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESL   39 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcC
Confidence            3589999999999999999999996 68999864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=80.77  E-value=1.5  Score=48.70  Aligned_cols=33  Identities=36%  Similarity=0.504  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|..|..+|..|++.|+ +++|||..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~  124 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKR  124 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC-eEEEEEec
Confidence            4689999999999999999999996 69999864

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=80.73  E-value=1.6  Score=45.22  Aligned_cols=39  Identities=10%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY  231 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~  231 (726)
                      ..+.++|+||+++ ++.+-...-..|.++++|+|..-+ |+
T Consensus        68 ~~l~~~DvVIDft-~p~~~~~~~~~a~~~G~~vVigTt-G~  106 (273)
T 1dih_A           68 AVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMVIGTT-GF  106 (273)
T ss_dssp             TTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEEECCC-CC
T ss_pred             HHhcCCCEEEEcC-ChHHHHHHHHHHHhCCCCEEEECC-CC
Confidence            3456789999988 566667777899999999765443 54

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=80.71  E-value=1.4  Score=47.18  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHh--CCCeEEEEeCCccC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLS--GFSNIEIVDLDTID   55 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~--Gv~~i~iiD~D~Ie   55 (726)
                      ..|+|||+|.+|+.+|..|++.  |. +++|+|...+-
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~-~V~vlE~~~~~   73 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGR-SLLLVEEGGLP   73 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSCSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCC-eEEEEeCCCCC
Confidence            5799999999999999999999  97 59999986543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=80.64  E-value=1.4  Score=48.68  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++..|+..|. +++++|.|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~   34 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTD   34 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECC
Confidence            689999999999999999999996 68888855

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=80.64  E-value=1.1  Score=47.96  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||..+++.|...|+ ++..+|.
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr  204 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNR  204 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECC
Confidence            4778999999999999999999997776 5777764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=80.57  E-value=1.2  Score=45.54  Aligned_cols=31  Identities=29%  Similarity=0.463  Sum_probs=25.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHh-----CCCeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLS-----GFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~-----Gv~~i~iiD   50 (726)
                      .+|.|||+|.+|+.++..|+..     |..+++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~   44 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA   44 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEE
Confidence            3799999999999999999999     722566664

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=80.53  E-value=1.1  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +..++|+|||.|-+|+|+|..|++.| .+++|+.
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~  175 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFA-DKVTIVH  175 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTC-SEEEEEC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEe
Confidence            45689999999999999999999888 4688875

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=80.51  E-value=1.4  Score=44.66  Aligned_cols=36  Identities=19%  Similarity=0.432  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46778899998 67999999999999997 68887753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=80.49  E-value=1.2  Score=48.58  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            79999999999999999999996 58888755

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.48  E-value=1.3  Score=48.80  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +...+|+|+|+|.+|..+++.+..+|. +++++|..
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~  222 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVR  222 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567899999999999999999999998 78888855

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=80.46  E-value=1.3  Score=45.03  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             cCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +++|||.|+ |+||.++++.|+..| .+++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            468999996 999999999999999 56888774

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=80.46  E-value=1.3  Score=49.38  Aligned_cols=35  Identities=20%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |..++|+|+|+|.||..+++.|...|. ++.++|.|
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~d  279 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVD  279 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            677899999999999999999999997 68888754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=80.43  E-value=1.5  Score=44.66  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|..|...|..|++.|. +++|+|..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   37 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGL-SFRFVDPL   37 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            4579999999999999999999997 59999964

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=80.42  E-value=1.3  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++|.|+|+|.||..+++.|..+|. ++.++|.+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~  243 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVD  243 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            567899999999999999999999997 58888864

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.42  E-value=1.3  Score=44.05  Aligned_cols=40  Identities=28%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             HHHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          13 LEDLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        13 ~q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ....+.+++|+|.| .||||.++++.|+..|. ++.++|.+.
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~   53 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   53 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            34567888999998 58999999999999996 588887553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=80.39  E-value=1.5  Score=43.80  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=29.4

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~   40 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRN   40 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5667888888 67999999999999997 58888753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=80.38  E-value=1.6  Score=44.45  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   49 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRD   49 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            46778899998 68999999999999995 68888754

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=80.29  E-value=1.2  Score=49.42  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..+|.|||+|.+|+.++.+|+..|+ +++++|.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr   36 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNR   36 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcC
Confidence            4689999999999999999999997 5777764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=80.28  E-value=1.6  Score=45.90  Aligned_cols=33  Identities=39%  Similarity=0.578  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++-.|+..|. ++|.++|-|
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   34 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD   34 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            489999999999999999998875 579998854

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=80.27  E-value=0.61  Score=49.03  Aligned_cols=39  Identities=33%  Similarity=0.553  Sum_probs=24.1

Q ss_pred             hhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCCCeE
Q psy9783         137 SIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANI  176 (726)
Q Consensus       137 ~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~~~i  176 (726)
                      ..++..|||||+ |...++|++|+.++++.+..+||+++|
T Consensus        69 D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~iNP~v~v  107 (292)
T 3h8v_A           69 DKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLF  107 (292)
T ss_dssp             CBC-------------CCTTSBHHHHHHHHHHHHCTTSEE
T ss_pred             CccChhhccccc-CChhhcCchHHHHHHHHHHhhCCCcEE
Confidence            346778999985 899999999999999999999999765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=80.27  E-value=2.5  Score=45.31  Aligned_cols=33  Identities=33%  Similarity=0.617  Sum_probs=29.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|++..|...|. ++++++..
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~  177 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQ  177 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeC
Confidence            5899999999999999999999996 78998864

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=80.26  E-value=1.4  Score=43.99  Aligned_cols=36  Identities=19%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   47 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRK   47 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46677888887 78999999999999996 68887753

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=80.25  E-value=1.9  Score=48.87  Aligned_cols=36  Identities=17%  Similarity=0.427  Sum_probs=31.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      ...|+|||+|.+|+.+|..|+..|. +++|+|.+.+-
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~-~V~LlE~~~~~   67 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGI-KTGLIEMQDFA   67 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            4689999999999999999999997 59999977554

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=80.22  E-value=1.8  Score=42.72  Aligned_cols=34  Identities=24%  Similarity=0.464  Sum_probs=27.6

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~   36 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRR   36 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            356788888 68999999999999996 57787753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=80.22  E-value=1.5  Score=44.14  Aligned_cols=36  Identities=31%  Similarity=0.576  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~   63 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLA   63 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56778889998 68999999999999997 57887753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=80.20  E-value=1.6  Score=44.25  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=29.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|||+|..|...|..|++.|. +++|+|.+
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   48 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGF-SVAILDKA   48 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            4679999999999999999999997 59999975

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=80.20  E-value=6.6  Score=43.41  Aligned_cols=36  Identities=3%  Similarity=-0.017  Sum_probs=30.8

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEE
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIES  226 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~s  226 (726)
                      .-+.++|+++.++++-+.-..+..+|.+++++-+-+
T Consensus       296 e~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          296 ENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             TTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            346789999999999999999999999999885543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=80.07  E-value=1.8  Score=43.39  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+.+++++|.| .||||.++++.|+..|. ++.++|.+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46678899998 68999999999999997 68887753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=80.06  E-value=1.4  Score=48.84  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |..++|+|+|+|.||..+++.|...|. ++.++|.|
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~d  252 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEID  252 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            567899999999999999999999998 58888754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=80.03  E-value=1.2  Score=47.42  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .|..++|.|||+|.||..+++.|...|. ++..+|
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d  195 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGM-KTIGYD  195 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEC
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEEC
Confidence            4788999999999999999999997774 577766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	726
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	1e-40
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	1e-27
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	3e-39
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	8e-15
d2vapa1	209	c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar	0.001

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-40
 Identities = 84/283 (29%), Positives = 117/283 (41%), Gaps = 101/283 (35%)

Query: 12  DLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVG 71
            L+ L+   KVLV+GAGG+GCELLKNL LSGF  I ++D+DTIDVSNLNRQFL       
Sbjct: 30  SLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFL------- 82

Query: 72  KSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANI 131
                                            F  + +G+ KA+VA     +  P+ N+
Sbjct: 83  ---------------------------------FRPKDIGRPKAEVAAEFLNDRVPNCNV 109

Query: 132 VAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISADFGVN 191
           V H   I                                                DF   
Sbjct: 110 VPHFNKI-----------------------------------------------QDFNDT 122

Query: 192 YFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELIK 239
           +++QF +++  LD+  AR  +N M +            +S VPLI+ GT G++G   +I 
Sbjct: 123 FYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVIL 182

Query: 240 KGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLF 280
            G T C EC  +  P    +P CTI + P  P HCI + + L 
Sbjct: 183 PGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ 225

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 1e-27
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 22/213 (10%)

Query: 453 KFDAAVEKDEHLVWDKDDKPAMDFVAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATS 512
           ++       E +  D DD   + ++   +  RA  ++I   +    + +   IIPA+A++
Sbjct: 225 QWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVAST 284

Query: 513 NAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKYLTAPNPTCPVCSPKPQ 572
           NA++A +       +  + +       +    N  D +     +       CP CS  PQ
Sbjct: 285 NAVIAAVCATEVFKIATSAYIPLNNYLVF---NDVDGLYTY-TFEAERKENCPACSQLPQ 340

Query: 573 RTIGLDVTKMTVAEFEEAVLKK-TLNMSA-MVDVMVEASGSVI----ISSEEGETEANND 626
                      + E  + +    +L M +  +   +E     +    ++S E  T  N  
Sbjct: 341 NIQ--FSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLS 398

Query: 627 KPL-EHGLIISHRVSARDGPEFEILDQKDLPQP 658
           K L E GL         DG E  + D    PQ 
Sbjct: 399 KTLKELGL--------VDGQELAVAD-VTTPQT 422

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 3e-39
 Identities = 43/291 (14%), Positives = 83/291 (28%), Gaps = 98/291 (33%)

Query: 8   VFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHK 67
           ++    ++ ++ + V ++ A   G E+LKNLVL G  +  I+D + +   +    F    
Sbjct: 14  LWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQ- 72

Query: 68  QHVGKSKAQVARNSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNP 127
                                                  +  +GK++A+ A       N 
Sbjct: 73  ---------------------------------------RSSIGKNRAEAAMEFLQELNS 93

Query: 128 DANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIISAD 187
           D +      S    L                                            D
Sbjct: 94  DVSGSFVEESPENLL--------------------------------------------D 109

Query: 188 FGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKGETKCYE 247
              ++F +FT+V+      +    +  +   S++PL+   T G  G + +I   E    E
Sbjct: 110 NDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRII-IKEHPVIE 168

Query: 248 CDPKPA------AKTYPG-------CTIRNTPSEPIHCIVWAKHLFNYLER 285
             P  A       K +P          + +   +      W   +  YL +
Sbjct: 169 SHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQ 219

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 72.7 bits (177), Expect = 8e-15
 Identities = 30/93 (32%), Positives = 47/93 (50%)

Query: 17  IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQ 76
           +K S+VL+VG GG+GC   + L  +G  N+ ++D DT+ +SNL RQ L     VG+ K +
Sbjct: 28  LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVE 87

Query: 77  VARNSALNFNPDANIYYQVDFHLNRQFLFHKQH 109
            AR++    NP   I        + +       
Sbjct: 88  SARDALTRINPHIAITPVNALLDDAELAALIAE 120

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 10 EKDLEDLIK--KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNR 61
          +K+L + ++  K+K+ VVG GG G   +  L + G    + V ++T D   L R
Sbjct: 4  DKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINT-DAQQLIR 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	726
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.13
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.36
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.25
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.13
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.98
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.79
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.21
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.92
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	94.89
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.77
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.71
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.7
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.51
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.45
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.38
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.3
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.28
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.25
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.14
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.13
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.08
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.01
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.99
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.97
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.87
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.8
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.71
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.68
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.4
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.38
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.35
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.32
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	93.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.09
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.01
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.84
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.76
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.65
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.64
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.48
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.25
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.24
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.17
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.14
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.02
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.91
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	91.9
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.79
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.65
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	91.65
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.6
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	91.48
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.45
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	91.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.31
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.27
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.27
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.19
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.13
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.1
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.99
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	90.93
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.92
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.87
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	90.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	90.69
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.62
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.58
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.54
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.53
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.37
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	90.34
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	90.27
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.17
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.13
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.97
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	89.97
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.76
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.7
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.66
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.54
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.37
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.19
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	89.18
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.96
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	88.67
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.39
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	88.35
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.11
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	87.61
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.54
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	87.39
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	87.1
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	86.98
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.93
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.82
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.81
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	86.69
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.65
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.63
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	86.51
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	86.31
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.21
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.12
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.08
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	85.95
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.73
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	85.43
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.16
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	85.1
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.08
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.62
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.55
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.51
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.11
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.91
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	83.83
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.81
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	83.8
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.78
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.68
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	83.64
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.64
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	83.64
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.64
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.59
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	83.47
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.27
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	83.15
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.14
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	83.11
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.06
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.82
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.81
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	82.79
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	82.68
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.62
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	82.61
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	82.57
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	82.52
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	82.45
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.43
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	82.41
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	82.4
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	82.33
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.33
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	82.29
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.29
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	82.29
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	82.27
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	81.93
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	81.82
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.64
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	81.63
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.6
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.57
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	81.48
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.39
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.29
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	81.28
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	81.26
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.15
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	81.02
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	80.87
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.65
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	80.46
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	80.39
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	80.39
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	80.34
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.3
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	80.25
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.25
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.18
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.12
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.05

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-72  Score=618.91  Aligned_cols=355  Identities=32%  Similarity=0.577  Sum_probs=281.0

Q ss_pred             HHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHHhhhcCCCCc
Q psy9783          11 KDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNSALNFNPDAN   90 (726)
Q Consensus        11 ~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~l~~~np~~~   90 (726)
                      +..|.+|+++|||||||||+|||+||+|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++|+++++++||+  
T Consensus        29 e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~--  106 (426)
T d1yovb1          29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN--  106 (426)
T ss_dssp             SHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT--
T ss_pred             HHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC--
Confidence            456888999999999999999999999999999999999999999999999999999999999999999666555555  


Q ss_pred             eeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhh
Q psy9783          91 IYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNF  170 (726)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~  170 (726)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (426)
T d1yovb1         107 --------------------------------------------------------------------------------  106 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhh------------hcCCcEEEEccCCccceEEEE
Q psy9783         171 NPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCL------------ASEVPLIESGTAGYEGQVELI  238 (726)
Q Consensus       171 np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~------------~~~iPlI~sg~~G~~G~v~~i  238 (726)
                         ++|++++.++.+  ++.+|+++||+|++|+||+++|.++|++|+            +.++|+|++|+.|+.||+.++
T Consensus       107 ---v~i~~~~~~i~~--~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~G~~~vi  181 (426)
T d1yovb1         107 ---CNVVPHFNKIQD--FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI  181 (426)
T ss_dssp             ---CCCEEECSCGGG--BCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEE
T ss_pred             ---CceEeeeccccc--hHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeEEEEEEE
Confidence               455555555543  346789999999999999999999999997            467899999999999999999


Q ss_pred             eCCCCcceecCCC--CCCCCCCCccccCCCCCcchhhhhHhHHhHHHHHHHhhhcchhHHHHHHHHhhhhhhhhhcccch
Q psy9783         239 KKGETKCYECDPK--PAAKTYPGCTIRNTPSEPIHCIVWAKHLFNYLERLMLMKRCPLILKIQKLLERLSAMNVIRSQLP  316 (726)
Q Consensus       239 ~p~~t~cy~C~~~--~~~~~~p~Cti~~~p~~~~h~i~~a~~lf~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (726)
                      .|+.|+||+|...  |+++++|.|||+++|+.|+|||+||+.+.                                    
T Consensus       182 ~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~------------------------------------  225 (426)
T d1yovb1         182 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ------------------------------------  225 (426)
T ss_dssp             CTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTH------------------------------------
T ss_pred             CCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhc------------------------------------
Confidence            9999999999854  66789999999999999999999998641                                    


Q ss_pred             HHHHHHHhhhccCCccccccccccccchhhhhHhhhhhhhcCCccccccccchhhcccchHHHHHHHhHHHHHHHHcCCc
Q psy9783         317 KLIQAVQLGILRLNPFTVLSGLNICSSDAGAKAAASEATANGDVVRTSTRAWASACGYDPRKLFAKFFDADIRYLISMSD  396 (726)
Q Consensus       317 ~~~~~v~~G~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~c~~~~~~~f~~~F~~~I~~Ll~~~~  396 (726)
                                                                         |.+.                         
T Consensus       226 ---------------------------------------------------~~~~-------------------------  229 (426)
T d1yovb1         226 ---------------------------------------------------WPKE-------------------------  229 (426)
T ss_dssp             ---------------------------------------------------HHHS-------------------------
T ss_pred             ---------------------------------------------------cccc-------------------------
Confidence                                                               1000                         


Q ss_pred             ccCCCCCCCCcccCCCchhhcCCCcccCCCCCCcccccChHHHHHHHHHHHHHHHHHhhhhhccCCCccccCCChhhHHH
Q psy9783         397 LWKTRKAPQPLVWDTLSDAVAGSSKETDGGGLKDQRVWSVAECARVFERSVRELKTKFDAAVEKDEHLVWDKDDKPAMDF  476 (726)
Q Consensus       397 ~w~~~~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~L~~~l~~~~~~~~~l~FDKDDd~hmDF  476 (726)
                           ++                                                        ......||+||+.||+|
T Consensus       230 -----~~--------------------------------------------------------~~~~~~~d~dd~~~i~~  248 (426)
T d1yovb1         230 -----QP--------------------------------------------------------FGEGVPLDGDDPEHIQW  248 (426)
T ss_dssp             -----CT--------------------------------------------------------TSTTCCCCTTCHHHHHH
T ss_pred             -----cc--------------------------------------------------------ccccCCCCCCCHHHHHH
Confidence                 00                                                        00123489999999999


Q ss_pred             HHHHHHHhHHhcCCCCCCHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhcccchhhhccCCCCCCcccccccc
Q psy9783         477 VAACANIRAHVFSIPEKSRFDIKSMAGNIIPAIATSNAIVAGLVVLHAIHVLQARFSSCQTVYLRKKPNHRDQMIVPEKY  556 (726)
Q Consensus       477 VtAAANLRA~nY~Ip~~s~~~vK~IAGnIIPAIATTnAIVAGLvvlEl~KlL~~k~e~~rn~flnl~pn~~~~~~vP~~~  556 (726)
                      |+++||+||.+|+|+..+++.+|++|||||||||||||||||++++|++|++.++....+|.|+-....   ....+ ..
T Consensus       249 i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n~~~~~~~~---~~~~~-~~  324 (426)
T d1yovb1         249 IFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVD---GLYTY-TF  324 (426)
T ss_dssp             HHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSB---SCEEE-EE
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccceEEEecCC---CceEe-ee
Confidence            999999999999999999999999999999999999999999999999999998655555544422211   12233 33


Q ss_pred             CCCCCCCCCCCCCCCeEEEEEECCCCcHHHHHHHHHhc-ccCCccceeEEE--ecCCeEEEe----ccccccccccCCch
Q psy9783         557 LTAPNPTCPVCSPKPQRTIGLDVTKMTVAEFEEAVLKK-TLNMSAMVDVMV--EASGSVIIS----SEEGETEANNDKPL  629 (726)
Q Consensus       557 ~~ePnp~C~vC~~~~~~tl~id~~~~TL~~lid~ilk~-~l~m~~~pdV~~--~~~G~ll~s----s~e~e~~~nl~k~L  629 (726)
                      ..+|+|+|.||+..+ +++.++ .++||++|++++.++ +|+|.. |+++.  .+.+.+||.    +.+.++++||+|+|
T Consensus       325 ~~~k~~~C~vC~~~~-~~~~~~-~~~tL~~li~~~~~~~~l~~~~-p~~~~~~~~~~~~Ly~~~~~~le~~~~~nl~k~L  401 (426)
T d1yovb1         325 EAERKENCPACSQLP-QNIQFS-PSAKLQEVLDYLTNSASLQMKS-PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTL  401 (426)
T ss_dssp             CCCCCTTCTTTCSSC-BCCC-------CTTHHHHTTTCSSSCCSS-CCEECC-----CEECCCC----CGGGSTTC----
T ss_pred             eccCCCCCCeeCCce-EEEEEC-CCCCHHHHHHHHHHhhCcCccC-CcceeeecCCCcEEEecCCchhhHHhhhhhcCCH
Confidence            567999999999865 345444 479999999999776 689988 99854  444466662    34678999999999


Q ss_pred             hhh
Q psy9783         630 EHG  632 (726)
Q Consensus       630 ~el  632 (726)
                      +||
T Consensus       402 ~eL  404 (426)
T d1yovb1         402 KEL  404 (426)
T ss_dssp             ---
T ss_pred             HHh
Confidence            998

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-35  Score=297.13  Aligned_cols=174  Identities=30%  Similarity=0.523  Sum_probs=146.7

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHH
Q psy9783           2 ATKIPGV--FEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVAR   79 (726)
Q Consensus         2 ~~~~~~~--~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~   79 (726)
                      +.||+++  ||.++|+||++++|+||||||+||+++++|+++|||+|+|+|.|.||.|||+||+||+.+|||++|+++++
T Consensus        11 y~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~   90 (247)
T d1jw9b_          11 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR   90 (247)
T ss_dssp             THHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             hhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHH
Confidence            6789988  59999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcch
Q psy9783          80 NSALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSK  159 (726)
Q Consensus        80 ~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk  159 (726)
                      ++|+++||++++.                                                                   
T Consensus        91 ~~l~~~np~~~i~-------------------------------------------------------------------  103 (247)
T d1jw9b_          91 DALTRINPHIAIT-------------------------------------------------------------------  103 (247)
T ss_dssp             HHHHHHCTTSEEE-------------------------------------------------------------------
T ss_pred             HHHHHhhcccchh-------------------------------------------------------------------
Confidence            7777666666554                                                                   


Q ss_pred             hhhHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEE-
Q psy9783         160 AQVARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELI-  238 (726)
Q Consensus       160 ~~~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i-  238 (726)
                                        .+...+.+ .....++..+|+|++|+|++.+|.++|++|+.+++|+|.++..|+.|++.++ 
T Consensus       104 ------------------~~~~~~~~-~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~~~g~~~~~~  164 (247)
T d1jw9b_         104 ------------------PVNALLDD-AELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFT  164 (247)
T ss_dssp             ------------------EECSCCCH-HHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEEC
T ss_pred             ------------------hhhhhhhh-ccccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccccccceEEEe
Confidence                              33333332 1224567889999999999999999999999999999999999999999876 


Q ss_pred             eCCCCcceecCCCCCCCCCCCcc
Q psy9783         239 KKGETKCYECDPKPAAKTYPGCT  261 (726)
Q Consensus       239 ~p~~t~cy~C~~~~~~~~~p~Ct  261 (726)
                      .+..++||.|.....+...+.|.
T Consensus       165 ~~~~~~c~~c~~~~~~~~~~~~~  187 (247)
T d1jw9b_         165 YQDGEPCYRCLSRLFGENALTCV  187 (247)
T ss_dssp             CCTTCCCTHHHHTTCCC------
T ss_pred             ecCCcccccccccccccccCCcc
Confidence            47789999998665544455554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=314.38  Aligned_cols=186  Identities=20%  Similarity=0.305  Sum_probs=157.6

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCCcCCCCCCCccChhHHHHHHHH
Q psy9783           2 ATKIPGVFEKDLEDLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLNRQFLFHKQHVGKSKAQVARNS   81 (726)
Q Consensus         2 ~~~~~~~~g~~~q~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLnRQfLf~~~dvGk~Ka~va~~~   81 (726)
                      +.||+|+||.++|++|++++|+|||+||+|||+||||+++|||+|+|+|.|.|+.+||+|||||+++|||++||++++++
T Consensus         8 YdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~   87 (529)
T d1yova1           8 YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEF   87 (529)
T ss_dssp             THHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCceeeeeccccchhhhhhccccCchhhhHhhccccCCCCCCeEeeecchhhhhhhhchhhhhhccccCcchhh
Q psy9783          82 ALNFNPDANIYYQVDFHLNRQFLFHKQHVGKSKAQVARNSALNFNPDANIVAHHTSIIRFLHLNRQFLFHKQHVGKSKAQ  161 (726)
Q Consensus        82 l~~~np~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~q~l~~~~hvg~sk~~  161 (726)
                      |.++||++++.......                                                               
T Consensus        88 L~~lNp~v~i~~~~~~~---------------------------------------------------------------  104 (529)
T d1yova1          88 LQELNSDVSGSFVEESP---------------------------------------------------------------  104 (529)
T ss_dssp             HHTTCTTSBCCEESSCH---------------------------------------------------------------
T ss_pred             HHHhCCCCcEEEEcCCc---------------------------------------------------------------
Confidence            99999999877532210                                                               


Q ss_pred             hHHHHHHhhCCCCeEEEEecccccccccccccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCccceEEEEeCC
Q psy9783         162 VARNSALNFNPDANIVAHHTSIISADFGVNYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYEGQVELIKKG  241 (726)
Q Consensus       162 ~ak~~~~~~np~~~i~~~~~~i~~~~~~~~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~G~v~~i~p~  241 (726)
                         ..+.                  ..+.+|+.++|+||+|.|+..+|..++++|+.+++|+|.+++.|+.|++.+..+.
T Consensus       105 ---~~~~------------------~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~~  163 (529)
T d1yova1         105 ---ENLL------------------DNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKE  163 (529)
T ss_dssp             ---HHHH------------------HSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECSC
T ss_pred             ---hhhh------------------hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeCC
Confidence               1111                  1235789999999999999999999999999999999999999999999999885


Q ss_pred             CCcceecCCCCCCCCCCCccccCCCCCcchhhh
Q psy9783         242 ETKCYECDPKPAAKTYPGCTIRNTPSEPIHCIV  274 (726)
Q Consensus       242 ~t~cy~C~~~~~~~~~p~Cti~~~p~~~~h~i~  274 (726)
                       ..+.++.+.  ....+.|..+.+|....|+..
T Consensus       164 -~~~~e~~p~--~~~~dlrl~~p~p~l~~~~~~  193 (529)
T d1yova1         164 -HPVIESHPD--NALEDLRLDKPFPELREHFQS  193 (529)
T ss_dssp             -EEESCCCCS--SCCCCCCSSSCCHHHHHHHHT
T ss_pred             -ceEEecCCC--CCCCccccCCCcHHHHHHHhh
Confidence             445555443  344556666666665555533

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.13  E-value=0.00094  Score=57.88  Aligned_cols=36  Identities=19%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|++++|+|||.|.+|..-++.|...|. ++++++.+
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~   44 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT   44 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            3678999999999999999999999996 58888754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0016  Score=60.97  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=33.2

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +++++|+|+|+||.|-.++..|...|+.+|+|++.+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~   51 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR   51 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence            577899999999999999999999999999998743

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.002  Score=58.30  Aligned_cols=37  Identities=27%  Similarity=0.569  Sum_probs=33.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +|++++|+|||.|.+|.+-++.|..+|. +++||+.+.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~   46 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4789999999999999999999999994 899997653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.13  E-value=0.0099  Score=53.98  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++||.|+|+|.+|+.++..|++.|. +++++|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~   33 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   33 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5799999999999999999999996 68887754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.98  E-value=0.0022  Score=57.65  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +++|+|||||.+|..+|+.|+..|. +++|+|.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            6899999999999999999999998 69999854

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.79  E-value=0.011  Score=51.79  Aligned_cols=32  Identities=31%  Similarity=0.648  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|+|+|+|.+|..+++.|...|. .+++||.|
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d   32 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   32 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCC
Confidence            479999999999999999999994 69999975

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.68  E-value=0.0049  Score=56.22  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..+||+|||+|..|.+.|..|++.|+..++|+|.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~   36 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEK   36 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEe
Confidence            4689999999999999999999999988999884

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.21  E-value=0.0096  Score=52.20  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .+++|||+|-||+|+|..|.+.|. +++|+..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech
Confidence            489999999999999999999996 699987654

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0038  Score=53.06  Aligned_cols=52  Identities=17%  Similarity=0.220  Sum_probs=41.3

Q ss_pred             CCCcHHHHHHHHHhc-ccCCccceeEEEe--cCC-eEEEec---cccccccccCCchhhh
Q psy9783         580 TKMTVAEFEEAVLKK-TLNMSAMVDVMVE--ASG-SVIISS---EEGETEANNDKPLEHG  632 (726)
Q Consensus       580 ~~~TL~~lid~ilk~-~l~m~~~pdV~~~--~~G-~ll~ss---~e~e~~~nl~k~L~el  632 (726)
                      .++||++||+.+.+. ++.|.. |+++..  +.+ ++|+.+   .|..|+.||.|+|+||
T Consensus         9 ~~~TL~~li~~L~e~p~~qlk~-Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eL   67 (92)
T d1y8xb1           9 PSAKLQEVLDYLTNSASLQMKS-PAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKEL   67 (92)
T ss_dssp             TTCBHHHHHHHHHHCTTCCCSS-CEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGG
T ss_pred             CCCcHHHHHHHHhhChHhhccC-CceeeecCCCccEEEecCcHHHHHHhhhccccCHHHh
Confidence            378999999999776 699999 999653  333 566653   4577999999999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.15  E-value=0.009  Score=54.76  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ++.||.|||+|.+|+.++-.|++.|+.++.++|
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D   38 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYD   38 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence            467999999999999999999999999999998

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.92  E-value=0.069  Score=49.11  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...+|+|+|+|++|.-.+..+..+|..+|.++|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            35689999999999999999999999999999854

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=94.89  E-value=0.01  Score=54.63  Aligned_cols=35  Identities=34%  Similarity=0.544  Sum_probs=32.5

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .|.+++|+|||+|++|..++++|...|+++++|+.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n   55 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN   55 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc
Confidence            46899999999999999999999999999999963

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.83  E-value=0.013  Score=50.38  Aligned_cols=31  Identities=29%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|+|||+|.+|||+|..|+..| .++||++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G-~~Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFG-TKVTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CeEEEECCCccceeeeeeecccc-cEEEEEEe
Confidence            68999999999999999999999 55999873

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.013  Score=51.20  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      -++++|||+|.||||+|..|+..|. +++|++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEe
Confidence            3689999999999999999999995 5999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.014  Score=52.18  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .||+|+|+|++|+.++..|+..|. .++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCH
Confidence            489999999999999999999996 688887643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.014  Score=50.47  Aligned_cols=32  Identities=34%  Similarity=0.386  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +||+|||+|.+|+|+|..|.+.|. +++|++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            689999999999999999999996 79999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.65  E-value=0.013  Score=57.22  Aligned_cols=36  Identities=31%  Similarity=0.718  Sum_probs=32.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTID   55 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie   55 (726)
                      -+|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999988654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.51  E-value=0.018  Score=50.31  Aligned_cols=33  Identities=33%  Similarity=0.617  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~   62 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQ   62 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeec
Confidence            5799999999999999999999994 69998853

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.45  E-value=0.017  Score=49.60  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=28.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++++|||+|.+|+|+|..|++.|. +++|++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            689999999999999999999996 6999875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.11  Score=47.97  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=28.6

Q ss_pred             hcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .-+||+|+| .|.||.++++.|...|. ++++++.+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~   36 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRD   36 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcC
Confidence            357899999 58999999999999995 68887654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.30  E-value=0.016  Score=50.38  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=28.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|+|||+|.+|+|+|..|+..|. +++|++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~   53 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGI-DSYIFAR   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CEEEEECCchHHHHHHHHHHhccc-cceeeeh
Confidence            689999999999999999999984 6999884

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.28  E-value=0.021  Score=52.17  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.||.|||+|.+|+.++-.|++.|+.+|.|+|
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D   34 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   34 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            46999999999999999999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.25  E-value=0.018  Score=50.24  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~   62 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDIL   62 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHhhccce-EEEEEEec
Confidence            4689999999999999999999996 59999763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.067  Score=52.14  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=31.9

Q ss_pred             HHHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          14 EDLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        14 q~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .++|+++.++|.| .+|||.++|+.|++.|. ++.+.|.
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r   42 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCAR   42 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3568899999997 78999999999999997 6888774

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.13  E-value=0.019  Score=52.71  Aligned_cols=33  Identities=33%  Similarity=0.613  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ++++|+|+|+||.|..++..|...|+++|+|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence            577999999999999999999999999999964

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.08  E-value=0.022  Score=50.97  Aligned_cols=32  Identities=34%  Similarity=0.550  Sum_probs=29.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+|||+|-.|...|..|++.|+.+++|++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999853

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.06  E-value=0.024  Score=49.92  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .+||+|||+|.+|.|+|..|.+.|-. +|+++|.+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            57999999999999999999999974 79999865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.024  Score=49.59  Aligned_cols=31  Identities=26%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|+|||+|.+|||+|..|++.|. +++|++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEee
Confidence            689999999999999999999995 5888875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.99  E-value=0.026  Score=51.18  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      ++.||.|||+|.+|+.++-.|+..|+ .+|.++|-|
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            46799999999999999999999996 589999844

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.97  E-value=0.026  Score=50.80  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.||.|||+|.+|+.+|-.|++.|+.++.++|-
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~   33 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   33 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEee
Confidence            469999999999999999999999999888873

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.87  E-value=0.025  Score=49.12  Aligned_cols=33  Identities=27%  Similarity=0.620  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|+|..|+..|. ++++++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4789999999999999999999995 68888754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.80  E-value=0.011  Score=54.70  Aligned_cols=37  Identities=30%  Similarity=0.633  Sum_probs=32.7

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      .++.+.||.|||+|.+|+.++-.|+..|.. +|.++|.
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            356788999999999999999999999985 6999883

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.73  E-value=0.028  Score=49.40  Aligned_cols=31  Identities=29%  Similarity=0.549  Sum_probs=28.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+++|||+|-||||+|..|...|. +++|++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            589999999999999999999995 6888875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.71  E-value=0.031  Score=49.44  Aligned_cols=33  Identities=21%  Similarity=0.527  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|-+|+|+|..|+..|. +++|++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            5789999999999999999999996 59999863

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.68  E-value=0.034  Score=47.86  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~   51 (726)
                      ++|+|||+|.+|||+|..|...|-.  +++|+++
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~   54 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYR   54 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEec
Confidence            6899999999999999999988875  7999986

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.60  E-value=0.033  Score=51.73  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=31.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      .+||+|||+|-.|+..|-.|+..|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999998 6999998755

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.40  E-value=0.037  Score=47.41  Aligned_cols=33  Identities=21%  Similarity=0.167  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|+|||+|.+|+|+|..|++.| .++++++..
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~~~   54 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATG-RRTVMLVRT   54 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcc-hhheEeecc
Confidence            478999999999999999999998 568887753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.031  Score=46.34  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++++||+|+|+|..|-.+++.|...| .++++.|.
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g-~~v~~~D~   36 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARG-VTPRVMDT   36 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTT-CCCEEEES
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCC-CEEEEeeC
Confidence            57899999999999999999999999 55888885

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.35  E-value=0.038  Score=49.46  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .||.|||+|.+|..++-.|+..|. .+|.++|-+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            479999999999999999999996 689999843

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.32  E-value=0.035  Score=48.08  Aligned_cols=31  Identities=32%  Similarity=0.420  Sum_probs=27.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++++|||+|-||||+|..|+..|.. ++|+..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~   53 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLEA   53 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEEe
Confidence            6899999999999999999999964 777653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=93.20  E-value=0.097  Score=48.08  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.+++|+|+|+||.|-.++..|.. |..+|+|+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~n   48 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLAN   48 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-cCceeeecc
Confidence            567899999999999999999986 668999863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.09  E-value=0.17  Score=46.29  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+||+|--.+..+..+|..+|.++|.+
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            4579999999999999999999999999999854

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.01  E-value=0.034  Score=51.35  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+||+|||+|..|...|..|++.|+ +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            3789999999999999999999998 6999984

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.92  E-value=0.049  Score=49.24  Aligned_cols=35  Identities=29%  Similarity=0.551  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      .+.||.|||+|.+|+.++-.|++.|. .+|.++|-+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            45789999999999999999999997 479999843

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.84  E-value=0.05  Score=49.05  Aligned_cols=32  Identities=41%  Similarity=0.593  Sum_probs=28.1

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      +|+|||+|-+|+.+|+.|...|.. +|..+|.+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            699999999999999999999974 67777753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.76  E-value=0.053  Score=49.10  Aligned_cols=33  Identities=21%  Similarity=0.528  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      .+||.|||+|.+|+.++-.|+..|. ++|.++|-
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   34 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEec
Confidence            3689999999999999999999996 68999883

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.65  E-value=0.047  Score=50.38  Aligned_cols=36  Identities=22%  Similarity=0.453  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~D   52 (726)
                      +.+.||.|||+|.+|+.++-.|+..|+ .+|.++|-+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            457799999999999999999999998 579999854

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.64  E-value=0.041  Score=47.86  Aligned_cols=31  Identities=32%  Similarity=0.484  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++++|||+|-+|+|+|..|+++|. ++||+..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            589999999999999999999995 7999865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.48  E-value=0.038  Score=49.06  Aligned_cols=30  Identities=40%  Similarity=0.568  Sum_probs=26.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +||+|||+|.+|+|+|..|.+ | .+++|++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~   30 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDK   30 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEec
Confidence            589999999999999999976 4 38999874

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.25  E-value=0.058  Score=50.65  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .+|+|||+|-.|+.+|..|++.|+..++|++..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            479999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.25  E-value=0.061  Score=46.60  Aligned_cols=34  Identities=26%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      ++++|+|+|-+|..+++.|...|. .+++||.|.-
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHH
Confidence            578999999999999999999996 5889998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.24  E-value=0.048  Score=49.27  Aligned_cols=32  Identities=44%  Similarity=0.570  Sum_probs=29.3

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      +||.|||| |.+|+.++-.|+..|+ ++|.++|-
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi   34 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI   34 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence            58999996 9999999999999998 89999984

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.17  E-value=0.058  Score=51.92  Aligned_cols=33  Identities=30%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+|+|||+|..|+.+|-.|++.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4589999999999999999999998 69999864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.14  E-value=0.055  Score=50.86  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..||+|||+|..|+.+|..|++.|+ +++|+|.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er   35 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYER   35 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            4689999999999999999999998 7999985

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.02  E-value=0.074  Score=47.51  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      ++.+|+|||+|.+|+|+|..|.+.|.. +|++++..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            367899999999999999999999986 55555543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.91  E-value=0.18  Score=45.63  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+||+|.-.+..+..+|..++.++|.+
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            3579999999999999999999999999998844

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.90  E-value=0.29  Score=44.87  Aligned_cols=29  Identities=34%  Similarity=0.471  Sum_probs=25.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIV   49 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~ii   49 (726)
                      .+|.|+|+|..|..+|..|+..|. +++++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~   29 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIW   29 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            479999999999999999999984 56665

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=1.7  Score=42.25  Aligned_cols=31  Identities=32%  Similarity=0.761  Sum_probs=26.0

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      ++||||.| .|-||.++++.|...|. +++.+|
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d   32 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVD   32 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            47999998 55599999999999984 577777

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.65  E-value=0.073  Score=48.63  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.+++|+|+|+||.|-.++-.|...|+ +|+|+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~n   48 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITN   48 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEecc
Confidence            467899999999999999999999998 588863

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.65  E-value=0.085  Score=47.14  Aligned_cols=32  Identities=28%  Similarity=0.604  Sum_probs=28.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      .||.|||+|.+|+.++-.|+..|. .+|.++|-
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            489999999999999999999998 48999983

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=91.65  E-value=0.072  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      -|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~   38 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGTM   38 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            59999999999999999999994 7999998765

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.60  E-value=0.22  Score=48.38  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||+++.++|.| ++|||-++++.|+..|. ++.++|.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r   36 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDV   36 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            47788888887 67999999999999996 6888873

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.48  E-value=0.22  Score=44.55  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEc
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESG  227 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg  227 (726)
                      ..+.+.|+++.|+.+-.++.+...+ .+.++.+|+.+
T Consensus        60 ~~~~~~d~vf~a~p~~~s~~~~~~~-~~~g~~VID~S   95 (144)
T d2hjsa1          60 FDFSSVGLAFFAAAAEVSRAHAERA-RAAGCSVIDLS   95 (144)
T ss_dssp             CCGGGCSEEEECSCHHHHHHHHHHH-HHTTCEEEETT
T ss_pred             hhhccceEEEecCCcchhhhhcccc-ccCCceEEeec
Confidence            4467899999999998888887664 67788888755

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.45  E-value=0.091  Score=47.33  Aligned_cols=31  Identities=32%  Similarity=0.551  Sum_probs=28.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD   50 (726)
                      .||.|||+|.+|+.+|-.|++.|+. +|.++|
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D   33 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED   33 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5899999999999999999999984 799988

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=1.2  Score=41.48  Aligned_cols=36  Identities=25%  Similarity=0.565  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      ++.+++|+|.| .|-||.++++.|..-|. .+|.++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R   48 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR   48 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEec
Confidence            57888999998 79999999999999986 57888764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.31  E-value=0.094  Score=47.10  Aligned_cols=32  Identities=34%  Similarity=0.345  Sum_probs=27.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||.|||+|-+|+.+|+.|...|. +++.+|.+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            479999999999999999999996 57776643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.27  E-value=0.081  Score=46.96  Aligned_cols=32  Identities=34%  Similarity=0.625  Sum_probs=28.9

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +||.||| +|-+|..++++|...|+ +++++|.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~   42 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   42 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccc
Confidence            5899999 89999999999999997 58888864

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.27  E-value=0.097  Score=47.00  Aligned_cols=31  Identities=32%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC-CeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF-SNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv-~~i~iiD   50 (726)
                      .||.|||+|.+|+.++-.|+..|. .+|.++|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            489999999999999999999987 6899998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.19  E-value=0.1  Score=46.75  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      +.||.|||+|.+|+.++-.|+..|.. +|.++|-+
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            36899999999999999999999984 79999944

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.13  E-value=0.089  Score=46.36  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=26.6

Q ss_pred             CcEEEE-cCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVV-GAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvV-GaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||.|| |+|++|..+++.|+..|.. +++.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R   32 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSR   32 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEES
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            479999 7999999999999999954 777664

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.10  E-value=0.091  Score=49.10  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      -||+|||+|..|...|..|++.|.+ +++|+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999887 79999854

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.99  E-value=0.094  Score=48.92  Aligned_cols=37  Identities=32%  Similarity=0.380  Sum_probs=33.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .|.+++|.|||+|.||.++++.|...|+ ++..+|.+.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            3788999999999999999999999998 688888654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.93  E-value=0.09  Score=51.01  Aligned_cols=40  Identities=35%  Similarity=0.478  Sum_probs=37.1

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      .+|++.||+++|+|+.|+-+++.|...|.+++.++|.+-+
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            4688999999999999999999999999999999998755

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.92  E-value=0.11  Score=47.02  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=27.5

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCC-eEEEEe
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFS-NIEIVD   50 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD   50 (726)
                      +++|+|||+|.+|+|+|..|.+.|.. .|+++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            56899999999999999999999976 555554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.87  E-value=0.13  Score=43.83  Aligned_cols=32  Identities=19%  Similarity=0.230  Sum_probs=27.2

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCC--CeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGF--SNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv--~~i~iiD~   51 (726)
                      ++|+|||+|.+|+|+|..|+..+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            689999999999999999887643  37888875

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.86  E-value=0.1  Score=49.37  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .|.+++|.|||+|.||.++++.|...|+ ++..+|
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d   73 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYD   73 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcc-cccccC
Confidence            4889999999999999999999998887 566666

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=90.69  E-value=0.11  Score=49.24  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ++|+|||+|..|...|..|++.|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            589999999999999999999996 69999853

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.62  E-value=0.12  Score=47.40  Aligned_cols=34  Identities=32%  Similarity=0.496  Sum_probs=31.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ...|+|+|+||+|...+..+..+|..+|..+|.+
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            4579999999999999999999999999999854

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.58  E-value=0.1  Score=48.06  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-----eEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-----NIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-----~i~iiD~D~I   54 (726)
                      .||+|||+|-+|+..|-.|+..|..     ++++++.+..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~   40 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT   40 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence            4799999999999999999999975     6778876544

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.54  E-value=0.1  Score=47.14  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=28.9

Q ss_pred             CcEEEEcC-chHHHHHHHHHHHhCC-CeEEEEeC
Q psy9783          20 SKVLVVGA-GGIGCELLKNLVLSGF-SNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGa-GgiGceiaknLal~Gv-~~i~iiD~   51 (726)
                      .||.|||| |.+|..++-.|+..|+ ++|.++|.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~   34 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccc
Confidence            47999996 9999999999999996 79999984

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.14  Score=46.30  Aligned_cols=34  Identities=38%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+|++|.-.+..+..+|..++.++|.+
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            5689999999999999999999999999999844

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.37  E-value=0.45  Score=45.08  Aligned_cols=32  Identities=34%  Similarity=0.497  Sum_probs=26.8

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEe
Q psy9783          18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +++||||+|+ |-||.++++.|...| .++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~   34 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLF   34 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence            4678999995 889999999999999 4566654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.11  Score=48.73  Aligned_cols=93  Identities=11%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             cccccccEEEEc-cCcHHHHHHHHH-HhhhcC-CcEEEEccCCccc-eEEEEeCCCCcceecCCCCCCCCCCCccccCCC
Q psy9783         191 NYFKQFTLVMNA-LDNRAARNHVNR-MCLASE-VPLIESGTAGYEG-QVELIKKGETKCYECDPKPAAKTYPGCTIRNTP  266 (726)
Q Consensus       191 ~~~~~~DlVi~a-lDn~~aR~~in~-~c~~~~-iPlI~sg~~G~~G-~v~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p  266 (726)
                      +-+.++|+|+.| ..+.+....+-+ +..... -.++.+.+.++.- .+.-..+....|...++-.++...|..-|-..|
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~g~  164 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTP  164 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCT
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcCCC
Confidence            447889999997 456665544433 322221 2355555554321 000001111234444555555667777777888


Q ss_pred             CCcchhhhhHhHHhHHH
Q psy9783         267 SEPIHCIVWAKHLFNYL  283 (726)
Q Consensus       267 ~~~~h~i~~a~~lf~~l  283 (726)
                      ......+..++.++..+
T Consensus       165 ~T~~~~i~~~~~~~~~l  181 (192)
T d1f0ya2         165 MTSQKTFESLVDFSKAL  181 (192)
T ss_dssp             TCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            88888888888766543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.17  E-value=0.12  Score=48.13  Aligned_cols=91  Identities=11%  Similarity=0.014  Sum_probs=54.4

Q ss_pred             ccccccEEEEcc-CcHHHHHHHHHHhhhcCC--cEEEEccCCccceE-EEEeCCCCcceecCCCCCCCCCCCccccCCCC
Q psy9783         192 YFKQFTLVMNAL-DNRAARNHVNRMCLASEV--PLIESGTAGYEGQV-ELIKKGETKCYECDPKPAAKTYPGCTIRNTPS  267 (726)
Q Consensus       192 ~~~~~DlVi~al-Dn~~aR~~in~~c~~~~i--PlI~sg~~G~~G~v-~~i~p~~t~cy~C~~~~~~~~~p~Cti~~~p~  267 (726)
                      -+.++|+|+.|+ .+.+....+-...-.+-.  ..|.+.+.++.-.- .-.......|..+++..++...|.+-|-..+.
T Consensus        80 ~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~  159 (186)
T d1wdka3          80 DFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEK  159 (186)
T ss_dssp             TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSS
T ss_pred             cccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCC
Confidence            368899999885 566666544443333222  25566666543210 00011223455666666666788888888888


Q ss_pred             CcchhhhhHhHHhHH
Q psy9783         268 EPIHCIVWAKHLFNY  282 (726)
Q Consensus       268 ~~~h~i~~a~~lf~~  282 (726)
                      .....+..+..++..
T Consensus       160 T~~~~~~~~~~~~~~  174 (186)
T d1wdka3         160 SSDLAVATTVAYAKK  174 (186)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888888888776544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.13  E-value=0.15  Score=46.70  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=29.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      .||+|||+|-+|+|+|..|.+.|-+ +|++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4899999999999999999999876 79998754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.97  E-value=0.13  Score=47.53  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      -|++++|+|.| .||||.++++.|+..|. +++++|.+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~   56 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRK   56 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccc
Confidence            46899999999 69999999999999995 78888754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=89.97  E-value=0.11  Score=47.98  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .+|+|||+|..|...|..|++.|+ +++|++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            479999999999999999999998 5899884

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.27  Score=43.13  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=26.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHH----hCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVL----SGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal----~Gv~~i~iiD~   51 (726)
                      .++|+|||+|.+|+|+|-.|++    .|. ++++++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~   72 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFP   72 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecc
Confidence            4579999999999999999975    454 7888875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.70  E-value=0.16  Score=45.17  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=27.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .||.+||+|-+|..+++.|...|..++.+.|
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            4799999999999999999999977777765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.66  E-value=0.13  Score=46.35  Aligned_cols=32  Identities=25%  Similarity=0.606  Sum_probs=27.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||.+||+|-+|+.+|++|+..|. ++.+.|.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~   33 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV   33 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECc
Confidence            379999999999999999999997 57777643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.54  E-value=0.12  Score=51.64  Aligned_cols=33  Identities=36%  Similarity=0.587  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +++||+|||||-.|+.+|..|+..|. +++|++.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk   33 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQ   33 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEEC
Confidence            47899999999999999999999985 7889884

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.37  E-value=0.17  Score=46.04  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..+|+|+|+|++|...+..+...|..++.++|.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCEEEEECCCccchhheeccccccccccccccc
Confidence            478999999999999999999999999999985

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=3  Score=40.30  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=26.9

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||||.| .|-||+.+++.|...|--++..+|.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            4799998 5669999999999999667888874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=89.18  E-value=0.16  Score=46.41  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=28.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++|.+||+|.+|..++++|+..|+ ++.++|.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~   34 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            4789999999999999999999997 47777643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.16  Score=45.05  Aligned_cols=30  Identities=30%  Similarity=0.441  Sum_probs=27.2

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      -|+|||+|-.|...|..|++.|+ +++|+|.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~   36 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDK   36 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcC
Confidence            48999999999999999999997 5888874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=0.18  Score=46.96  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+||+|||+|..|.+.|..|++.|. +++|+|.+.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            46799999999999999999999995 799998653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.39  E-value=0.19  Score=47.65  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .|..++|+|-|.|.+|..+++.|...| .++++.|.|
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecch
Confidence            478899999999999999999999999 678888865

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.2  Score=46.36  Aligned_cols=33  Identities=24%  Similarity=0.523  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +..||+|||+|--|...|..|+..|+ +++|+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            35789999999999999999999997 6888763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.31  E-value=0.25  Score=44.81  Aligned_cols=34  Identities=32%  Similarity=0.389  Sum_probs=30.0

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ...+|+|+|+|++|...+..+..+|...+.++|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            3568999999999999998888999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.11  E-value=0.25  Score=45.32  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+|+|+|+|++|.-.+..+..+|.+.+.++|.+
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            4689999999999999999999999999999854

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=87.61  E-value=1.6  Score=39.73  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=24.2

Q ss_pred             cCcEEEEcCchHHHH--HHHHHHHh-C--CCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCE--LLKNLVLS-G--FSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGce--iaknLal~-G--v~~i~iiD~D   52 (726)
                      +.||.|||+|.+|..  ++..|++. +  .++|.++|-|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did   40 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID   40 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCC
Confidence            468999999999864  45555543 2  3689998854

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.54  E-value=0.29  Score=45.68  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|||++|.-.+..+..+|.+++.++|.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            5589999999999988888888999999999843

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.39  E-value=0.84  Score=39.95  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=27.0

Q ss_pred             cccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCc
Q psy9783         193 FKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGY  231 (726)
Q Consensus       193 ~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~  231 (726)
                      +..+|+|||-. ++++-...-++|.++++|+| .||.|+
T Consensus        39 ~~~~DVvIDFS-~p~~~~~~l~~~~~~~~p~V-iGTTG~   75 (128)
T d1vm6a3          39 LDSPDVVIDFS-SPEALPKTVDLCKKYRAGLV-LGTTAL   75 (128)
T ss_dssp             CSCCSEEEECS-CGGGHHHHHHHHHHHTCEEE-ECCCSC
T ss_pred             hccCCEEEEec-CHHHHHHHHHHHHhcCCCEE-EEcCCC
Confidence            45678888876 45566666778999999976 466666

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=87.10  E-value=1.5  Score=42.57  Aligned_cols=33  Identities=27%  Similarity=0.557  Sum_probs=26.5

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCC-----CeEEEEeCC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGF-----SNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv-----~~i~iiD~D   52 (726)
                      .||||.| .|-||+++++.|+..|.     .++..+|.-
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~   39 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCC
Confidence            4799997 78899999999999874     366777644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.98  E-value=0.28  Score=44.42  Aligned_cols=31  Identities=32%  Similarity=0.550  Sum_probs=26.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.||.|||+|-.|..++++|+..|+. +.+.|
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~d   31 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGFK-VAVFN   31 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEEC
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCCe-EEEEE
Confidence            35899999999999999999999965 66665

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.82  E-value=0.24  Score=47.12  Aligned_cols=31  Identities=35%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      |+|||+|-.|+.+|..|++.|. +++|||...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8999999999999999999996 689998643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.81  E-value=0.27  Score=44.13  Aligned_cols=31  Identities=35%  Similarity=0.530  Sum_probs=26.8

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .||.+||+|-+|..+|++|+..|+. +.+.|.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~   31 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVSDR   31 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCe-EEEEeC
Confidence            4799999999999999999999974 666653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.69  E-value=0.29  Score=43.39  Aligned_cols=30  Identities=20%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .||.|||+|-+|+.++++|...|+. +++.|
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~-v~~~~   30 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVE-VVTSL   30 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCE-EEECC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCe-EEEEc
Confidence            4799999999999999999999963 44543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.65  E-value=0.23  Score=49.10  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D   52 (726)
                      +||+|||||..|...|+.|.+.|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5899999999999999999998874 79998854

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.63  E-value=0.22  Score=48.23  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||+++.++|.| ++|||-++++.|+..|. ++.++|.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN   38 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            68889999998 68999999999999996 58888753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=86.51  E-value=0.83  Score=43.86  Aligned_cols=30  Identities=27%  Similarity=0.538  Sum_probs=25.7

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +||||.| +|-||+++++.|...|. +++.+|
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            4899998 66699999999999995 677787

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.31  E-value=1.7  Score=39.51  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=23.6

Q ss_pred             cccccccEEEEccCc--HHHHHHHHHHhhhcCC
Q psy9783         191 NYFKQFTLVMNALDN--RAARNHVNRMCLASEV  221 (726)
Q Consensus       191 ~~~~~~DlVi~alDn--~~aR~~in~~c~~~~i  221 (726)
                      +-++++|+|+.+..-  .+.+.....+...+++
T Consensus        73 eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          73 EAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             HHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            447899999998653  5577777778888777

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.21  E-value=0.77  Score=45.67  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=25.2

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ++|||.| .|-||+++++.|...|. +++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5677888 66699999999999994 6777764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.12  E-value=0.33  Score=43.48  Aligned_cols=32  Identities=38%  Similarity=0.589  Sum_probs=28.5

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCC-eEEEEeC
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFS-NIEIVDL   51 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~-~i~iiD~   51 (726)
                      +||.||| +|.+|+.++-.|+..|+. +|.++|-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            5899999 699999999999999986 6888874

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.08  E-value=0.29  Score=46.03  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|.+++|.|||+|.||.++++.|...|+. +..+|.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   76 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDP   76 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCC
Confidence            47889999999999999999999988865 566664

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=85.95  E-value=0.25  Score=47.53  Aligned_cols=37  Identities=30%  Similarity=0.543  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          15 DLIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        15 ~kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +||+++.++|.| ++|||-++++.|+..|. ++.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            368898888888 67999999999999997 68887743

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.73  E-value=0.32  Score=47.45  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+++.++|.| +||||.++++.|+..| .++.++|.+
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~   58 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRK   58 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence            67888888887 8999999999999999 578898853

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.43  E-value=0.31  Score=44.46  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=27.3

Q ss_pred             HHhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          16 LIKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        16 kL~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +|++++|+|+|+||.+-.++-.|  .+.++|+|+.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~n   47 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIAN   47 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEEC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeeh
Confidence            47899999999999999888665  5777888853

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.16  E-value=0.46  Score=42.32  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+|++|.-.+..+..+|. ++.++|.+
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~   59 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARS   59 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc-cccccchH
Confidence            5789999999999999999989996 78888743

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=85.10  E-value=0.26  Score=46.30  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |.+++|.|||+|.||.++++.|...|+. +...|.
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            7889999999999999999999877654 666664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.08  E-value=0.3  Score=46.62  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=36.0

Q ss_pred             eecchhhhhhhhchhhhhhccccCcchhhhHHHHHHhhCCC
Q psy9783         133 AHHTSIIRFLHLNRQFLFHKQHVGKSKAQVARNSALNFNPD  173 (726)
Q Consensus       133 ~~~~~~~~~~~l~~q~l~~~~hvg~sk~~~ak~~~~~~np~  173 (726)
                      ..-...++-.+||||++|...++|++|+.++++.+.++||+
T Consensus        59 lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~   99 (247)
T d1jw9b_          59 LLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH   99 (247)
T ss_dssp             EECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred             EECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcc
Confidence            33344677889999999999999999999999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.71  E-value=0.39  Score=44.71  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      --|+|||+|..|+..|..|++.|+ +++|+|..
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            359999999999999999999997 68888854

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.62  E-value=0.52  Score=42.34  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+|++|.-.+..+..+|..++.++|.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            5689999999999999999989999999998854

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.55  E-value=0.39  Score=44.05  Aligned_cols=31  Identities=13%  Similarity=0.364  Sum_probs=27.7

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      -|+|||+|..|.+.|..++++|. ++.|||.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            38999999999999999999996 58998865

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.51  E-value=0.91  Score=44.62  Aligned_cols=30  Identities=37%  Similarity=0.614  Sum_probs=24.5

Q ss_pred             CcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      +.|||.| .|-||+++++.|...|. +++++|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE
Confidence            4566776 78899999999999995 577776

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.11  E-value=0.31  Score=47.42  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||+++.++|.| .+|||-++++.|+..|. ++.++|.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57888888887 78999999999999996 69998843

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.91  E-value=0.46  Score=45.97  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |++++++|.| ++|||.++++.|+..|. ++.++|.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r   38 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR   38 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5788999998 88999999999999996 7999885

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.83  E-value=0.48  Score=44.45  Aligned_cols=33  Identities=39%  Similarity=0.667  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..++|+|||+|..|-..|..|++.|. +++|+|.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~   80 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDT   80 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEee
Confidence            56899999999999999999999996 5888874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.81  E-value=0.55  Score=41.87  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+||+|.-.+..+..+|...+.++|.+
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            4579999999999999999999999999998754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=83.80  E-value=0.44  Score=46.50  Aligned_cols=36  Identities=31%  Similarity=0.589  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|+++.++|.| .+|||-++++.|+..|. ++.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            47788888888 68999999999999996 68888743

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.48  Score=44.92  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=29.6

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |+++.++|.| ++|||.++++.|+..|. ++.++|.+
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~   38 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   38 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5677777887 78999999999999998 68898854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.68  E-value=0.52  Score=42.34  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEE
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIV   49 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~ii   49 (726)
                      ..||+|||.|-+|++.|..+.+.|...++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            5689999999999999999999999999986

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=83.64  E-value=0.37  Score=45.90  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEcC-c--hHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGA-G--GIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGa-G--giGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|++++++|.|+ |  |||-++++.|+..|. +|.+.+.|
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~   41 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFD   41 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            478899999996 4  599999999999996 58887755

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.64  E-value=0.46  Score=45.78  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||+++.++|-| .+|||.++++.|+..|. ++.++|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            57888888888 68999999999999997 5888875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.64  E-value=0.29  Score=47.76  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||+++.++|.| ++|||.++++.|+..|. ++.++|.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r   36 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGR   36 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            46788888887 78999999999999996 5888874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.36  Score=46.37  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||.+++++|.| +||||.++++.|+..|. ++.++|.+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~   39 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDIN   39 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            57778888876 88999999999999995 78998864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.46  Score=45.85  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||.++.++|.| .+|||-++++.|+..|. ++.+.|.+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   39 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            67889999998 68999999999999996 68888743

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.47  E-value=0.41  Score=44.33  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |..++|.|||+|.||.++++.|...|.. +...|..
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRH   76 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSS
T ss_pred             ccccceeeccccccchhhhhhhhccCce-EEEEeec
Confidence            6788999999999999999999888864 7776653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.27  E-value=0.51  Score=45.52  Aligned_cols=34  Identities=32%  Similarity=0.587  Sum_probs=29.0

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      |+++.|+|.| ++|||-++|+.|+..|..-+.+.|
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r   37 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILD   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            6788899997 669999999999999988666655

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.15  E-value=0.45  Score=45.42  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=34.5

Q ss_pred             hcCcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCccCccCC
Q psy9783          18 KKSKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTIDVSNL   59 (726)
Q Consensus        18 ~~~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~Ie~sNL   59 (726)
                      .+.||.|||+||-||.++..|.+.|+.  ++..+|.|.-..+..
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~   57 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRT   57 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTS
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcC
Confidence            457999999999999999999999997  456678876655543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.52  Score=45.15  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |.+++++|.| ++|||.++++.|+..|. ++.++|.+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            6778888887 78999999999999996 68888743

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.11  E-value=0.51  Score=45.43  Aligned_cols=35  Identities=20%  Similarity=0.464  Sum_probs=29.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |+++.++|.| ++|||.++++.|+..|. ++.++|.+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN   38 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5678888887 68999999999999996 68888853

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.06  E-value=0.58  Score=42.52  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=28.9

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .-|+|||+|..|.+.|..+++.|. +++||+.+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            458999999999999999999996 688888654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.82  E-value=0.52  Score=45.14  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|++++++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            36788888888 67999999999999996 58888843

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.81  E-value=0.58  Score=43.06  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ...|+|||+|..|.+.|..+++.|. +++|||.+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~   38 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQA   38 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            4579999999999999999999996 688888653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=82.79  E-value=0.68  Score=40.71  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      +-+|+|+|+|.+|-.+++.|...|. .+++||.|.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccc
Confidence            3479999999999999999999995 588888763

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.68  E-value=0.4  Score=47.09  Aligned_cols=30  Identities=17%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      .|+|||||-.||.+|..|+..|. +++|+|.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk   32 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEK   32 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEEC
Confidence            58999999999999999999995 6888874

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.62  E-value=0.52  Score=44.66  Aligned_cols=29  Identities=38%  Similarity=0.496  Sum_probs=27.1

Q ss_pred             EEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          22 VLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        22 VlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      |+|||+|-.|...|..|++.|+ +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999998 6999985

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=82.61  E-value=0.4  Score=48.21  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=34.4

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHh----------CCCeEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLS----------GFSNIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~----------Gv~~i~iiD~D~I   54 (726)
                      ..|.+.||++.|+|+.|+-+++.|+..          |.++|.++|..-+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            368899999999999999999999866          4569999997665

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.57  E-value=0.57  Score=44.40  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=30.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |++++++|.| ++|||.++++.|+..|. ++.++|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~   37 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   37 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5788899998 68999999999999996 68888865

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=82.52  E-value=0.51  Score=44.10  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             hcCcEEEEcC-chHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          18 KKSKVLVVGA-GGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        18 ~~~kVlvVGa-GgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .++||||.|+ |-||..+++.|...|. ++.+++.+
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECC
Confidence            3689999996 9999999999999995 57776643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.45  E-value=0.4  Score=46.28  Aligned_cols=35  Identities=29%  Similarity=0.504  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|++++++|.| ++|||-++++.|+..|. ++.++|.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADI   37 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            47788888887 68999999999999996 6888874

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.43  E-value=0.42  Score=45.82  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-c--hHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVGA-G--GIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVGa-G--giGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|+++++||.|+ |  |||-++|+.|+..|.. +.++|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            478899999996 5  7999999999999965 888883

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.41  E-value=0.63  Score=42.48  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTI   54 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~I   54 (726)
                      =|+|||+|..|.+.|..+++.|. ++.|||.+.+
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~   37 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGA-RAAVVESHKL   37 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCC
Confidence            38999999999999999999995 6899987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.40  E-value=0.4  Score=46.34  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||+++.++|.| .+|||.++++.|+..|. ++.++|.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH   38 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57777777777 78999999999999996 68888743

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.33  E-value=1.5  Score=39.06  Aligned_cols=37  Identities=5%  Similarity=0.170  Sum_probs=28.2

Q ss_pred             cccccccEEEEccCcHHHHHHHHHHhhhcCCcEEEEcc
Q psy9783         191 NYFKQFTLVMNALDNRAARNHVNRMCLASEVPLIESGT  228 (726)
Q Consensus       191 ~~~~~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~  228 (726)
                      ..+.+.|+++.++....+..+... ....++.+|+.+.
T Consensus        59 ~~~~~~d~~f~~~~~~~s~~~~~~-~~~~~~~VIDlSs   95 (154)
T d2gz1a1          59 TAFEGVDIALFSAGSSTSAKYAPY-AVKAGVVVVDNTS   95 (154)
T ss_dssp             TTTTTCSEEEECSCHHHHHHHHHH-HHHTTCEEEECSS
T ss_pred             hhhhhhhhhhhccCccchhhHHhh-hccccceehhcCh
Confidence            345678999999999888877664 4567888998653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.33  E-value=0.47  Score=45.92  Aligned_cols=36  Identities=31%  Similarity=0.494  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ||+++.++|.| .+|||-++++.|+..|. ++.++|.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            68888899987 78999999999999995 58888854

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=82.29  E-value=0.28  Score=49.58  Aligned_cols=40  Identities=25%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGF----------SNIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv----------~~i~iiD~D~I   54 (726)
                      .+|.+.||+++|+|+.|+-+++.|+.+++          ++|.++|..-+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            36889999999999999999999987733          37999997765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.29  E-value=0.41  Score=46.14  Aligned_cols=35  Identities=20%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |+++.++|.| ++|||.++++.|+..|. ++.++|.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5677788887 77899999999999997 68998864

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.29  E-value=3.1  Score=37.25  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSG   42 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~G   42 (726)
                      .||.|||+|.+|...++.|...+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~   24 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAP   24 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCC
Confidence            48999999999999999998764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.27  E-value=0.23  Score=44.00  Aligned_cols=27  Identities=37%  Similarity=0.570  Sum_probs=24.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCe
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSN   45 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~   45 (726)
                      .+||+|||+|.+|+++|..+++.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            458999999999999999999999753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.93  E-value=0.47  Score=46.93  Aligned_cols=32  Identities=34%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ...|+|||||..|..+|+.|...|+ +++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            4579999999999999999999999 6888885

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.82  E-value=0.57  Score=43.49  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLDTIDVSNLN   60 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D~Ie~sNLn   60 (726)
                      .||.|||+|-+|.-+|-.|+..|. +++.+|.|.=-..+|+
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhc
Confidence            479999999999999999999996 5889997754444443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.64  E-value=0.45  Score=45.82  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||+++.++|.| ++|||-++++.|+..|. ++.++|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            57888888887 88999999999999997 5888774

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=81.63  E-value=2.9  Score=40.71  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=26.2

Q ss_pred             cCcEEEEc-CchHHHHHHHHHHHhCCC-eEEEEe
Q psy9783          19 KSKVLVVG-AGGIGCELLKNLVLSGFS-NIEIVD   50 (726)
Q Consensus        19 ~~kVlvVG-aGgiGceiaknLal~Gv~-~i~iiD   50 (726)
                      -+||||.| .|-||+++++.|...|-. +++.+|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            36899998 888999999999999954 455555

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.60  E-value=0.4  Score=45.56  Aligned_cols=36  Identities=14%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          16 LIKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        16 kL~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +|.+++|+|.|++   |||.++++.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~   40 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   40 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCC
Confidence            4788899999864   6999999999999966 7787743

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.6  Score=43.49  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC-eEEEEeCCcc
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS-NIEIVDLDTI   54 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~-~i~iiD~D~I   54 (726)
                      ..++|||+|.+|+++|..|...|.. +|++|+.+..
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            4689999999999999999999985 8999987643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.48  E-value=0.71  Score=40.56  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             cCcEEEE--cCchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          19 KSKVLVV--GAGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        19 ~~kVlvV--GaGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      .++|+|+  |.|-+|+|+|..|+..| .+++|+.++.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G-~~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAG-HEVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcC-CeEEEEecCC
Confidence            3456666  89999999999999999 5799998764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.39  E-value=0.65  Score=42.29  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             cEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          21 KVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        21 kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      =|+|||+|..|++.|..+++.|. +++|||.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~   34 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEK   34 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            38999999999999999999996 5888874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.29  E-value=0.79  Score=40.92  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      ..+|+|+|+||+|.-.+..+...|..++..+|..
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            4579999999999999999999999999999854

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.28  E-value=2  Score=38.83  Aligned_cols=30  Identities=20%  Similarity=0.149  Sum_probs=20.6

Q ss_pred             ccccccEEEEccCc--HHHHHHHHHHhhhcCC
Q psy9783         192 YFKQFTLVMNALDN--RAARNHVNRMCLASEV  221 (726)
Q Consensus       192 ~~~~~DlVi~alDn--~~aR~~in~~c~~~~i  221 (726)
                      -++++|+|+++..-  .+.+.+...+-..+++
T Consensus        74 al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi  105 (169)
T d1s6ya1          74 ALDGADFVTTQFRVGGLEARAKDERIPLKYGV  105 (169)
T ss_dssp             HHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             hcCCCCEEEEccccCCCCCeehhhhhhhhcCc
Confidence            36789999998754  3455566666666665

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.26  E-value=2.8  Score=36.91  Aligned_cols=36  Identities=11%  Similarity=0.191  Sum_probs=27.3

Q ss_pred             cccEEEEccCcHHHHHHHHHHhhhcCCcEEEEccCCcc
Q psy9783         195 QFTLVMNALDNRAARNHVNRMCLASEVPLIESGTAGYE  232 (726)
Q Consensus       195 ~~DlVi~alDn~~aR~~in~~c~~~~iPlI~sg~~G~~  232 (726)
                      ++|+||+-. ++++-...-++|.++++|+|- ||.|+.
T Consensus        44 ~~DvvIDFS-~p~~~~~~~~~~~~~~~~~Vi-GTTG~~   79 (135)
T d1yl7a1          44 NTEVVIDFT-HPDVVMGNLEFLIDNGIHAVV-GTTGFT   79 (135)
T ss_dssp             TCSEEEECC-CTTTHHHHHHHHHHTTCEEEE-CCCCCC
T ss_pred             cCCEEEEcc-cHHHHHHHHHHHHhcCCCEEE-eccccc
Confidence            468888876 455666667789999999875 777774

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.15  E-value=0.65  Score=44.32  Aligned_cols=35  Identities=31%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|.++.++|.| .+|||.++|+.|+..|. ++.+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            57788888887 67899999999999996 6778764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=81.02  E-value=0.43  Score=44.33  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=27.0

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      .||+|+|+|.-|+.++..|+..|- ++++.+.|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEec
Confidence            479999999999999999999874 67776543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.87  E-value=0.64  Score=45.94  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +|+++.++|.| .+|||.++++.|+..|. ++.++|.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r   44 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASR   44 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            58888888887 78999999999999996 5888884

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.65  E-value=0.47  Score=45.74  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ||+++.++|.| ++|||-++++.|+..|. ++.+.|.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~   38 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDI   38 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            67888888887 77999999999999997 5888774

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.46  E-value=0.89  Score=40.62  Aligned_cols=32  Identities=28%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      +.+|+|+|+|++|...+..+..+|. ++.++|.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~   59 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGA-ETYVISR   59 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CCEEEEECCCCcchhHHHHhhhccc-ccccccc
Confidence            5789999999999988888888997 5667773

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.39  E-value=0.67  Score=44.19  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcCc---hHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          17 IKKSKVLVVGAG---GIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        17 L~~~kVlvVGaG---giGceiaknLal~Gv~~i~iiD~   51 (726)
                      |++++++|.|++   |||.++++.|+..|. ++.+.|.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~   42 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQ   42 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            678889999975   799999999999997 4777763

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.39  E-value=0.54  Score=45.46  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=29.5

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |+++.++|.| ++|||-++++.|+..|. ++.++|.+
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~   41 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN   41 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5677888887 78999999999999997 68888754

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.34  E-value=0.82  Score=43.17  Aligned_cols=40  Identities=18%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCC--eEEEEeCCccCccCC
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFS--NIEIVDLDTIDVSNL   59 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~--~i~iiD~D~Ie~sNL   59 (726)
                      .+|.|||.||.||.++..|.+.|+.  ++..+|.|.-..++.
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~   43 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNI   43 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSC
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcC
Confidence            5789999999999999999999986  567778886655543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.30  E-value=0.57  Score=41.64  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             CcEEEEcCchHHHHHHHHHHHhCCCeEEEEe
Q psy9783          20 SKVLVVGAGGIGCELLKNLVLSGFSNIEIVD   50 (726)
Q Consensus        20 ~kVlvVGaGgiGceiaknLal~Gv~~i~iiD   50 (726)
                      .||.+||+|-+|+.+++.|...| .++++.|
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~-~~i~v~~   30 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP-HELIISG   30 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEEC
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC-CeEEEEc
Confidence            47999999999999999998876 4566654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.25  E-value=0.95  Score=40.06  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=27.2

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDL   51 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~   51 (726)
                      ..+|+|+|+|++|.-.+..+..+| .++.++|.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~   59 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMG-LHVAAIDI   59 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCEEEEeeccccHHHHHHHHHHcC-Cccceecc
Confidence            567999999999999988888889 57888764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=0.37  Score=48.41  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             HHHhcCcEEEEcCchHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q psy9783          15 DLIKKSKVLVVGAGGIGCELLKNLVLSGF----------SNIEIVDLDTI   54 (726)
Q Consensus        15 ~kL~~~kVlvVGaGgiGceiaknLal~Gv----------~~i~iiD~D~I   54 (726)
                      ++|.+.||++.|+|+-|+-+++.|+.+|+          ++|.++|.+-+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            36889999999999999999999887765          37999998654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.18  E-value=0.67  Score=44.74  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=29.8

Q ss_pred             HhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          17 IKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        17 L~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      |++++++|.| .+|||-++|+.|+..|. ++.++|.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            7888888888 67899999999999995 68887743

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.12  E-value=1  Score=43.98  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEc-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q psy9783          16 LIKKSKVLVVG-AGGIGCELLKNLVLSGFSNIEIVDLDT   53 (726)
Q Consensus        16 kL~~~kVlvVG-aGgiGceiaknLal~Gv~~i~iiD~D~   53 (726)
                      ..+++||||.| .|-||+++++.|+..|. ++..+|...
T Consensus         5 ~~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~   42 (356)
T d1rkxa_           5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   42 (356)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            46899999999 56699999999999996 577887543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.05  E-value=0.62  Score=42.30  Aligned_cols=33  Identities=9%  Similarity=0.069  Sum_probs=28.4

Q ss_pred             cCcEEEEcCchHHHHHHHHHHHhCCCeEEEEeCC
Q psy9783          19 KSKVLVVGAGGIGCELLKNLVLSGFSNIEIVDLD   52 (726)
Q Consensus        19 ~~kVlvVGaGgiGceiaknLal~Gv~~i~iiD~D   52 (726)
                      +.+|+|||+|..|++.|-.|++.|.. ..|+|..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEee
Confidence            57899999999999999999999986 5666643