Psyllid ID: psy9795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MGFQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPIPGL
Secondary Structure (PSIPRED)
ccccccHHHHHEEccccccHHHHHHcccccHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHEEEEccccHcHHHHccccccHHEHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccc
Coil and Loop (DISEMBL)
MGFQISALAIEKFIvvdptnqcledmcdrngeffcstqgvpnhdkniqlesrsptenflesvetnqnypLLILTLVERADVDMTIRIAGAVAFKNYvkrnwplvedepdkihaSDREAIKGLILHLMLTSPEAIQKQLSDATaiigksdfpdkwpSLITDMVAkfgtgdfhiINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLvgehkdnptALKVIYNSLVVSCKIFYslnfqdlpeyfednMVVWMPALhnllvtdvpclrtdsifVNSFRRFISDVETRRRAACDFVKILCKYMEdkmmgtstagakdlfppipgl
Flexible Loop (DISEMBL)
MGFQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGavafknyvkrnwplvedepdkIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFrrfisdvetrrrAACDFVKILCKYMEDKMmgtstagakdlfppipgl
Low Complexity Region (SEG)
MGFQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPIPGL
Disordered region (IsUnstruct)
***QISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGV********************SVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMED********************
Disordered Region (DISOPRED)
******ALAIEKFIVVDPTNQ******DRNGEFFCSTQGVPNHDKN********TENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSI**NSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPIPGL
Disordered Region (DISEMBL)
MGFQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPIPGL
Disordered Region (DISPRO)
*GFQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPIP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFQISALAIEKFIVVDPTNQCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPIPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q7SZC2	971	Exportin-2 OS=Danio rerio	yes	N/A	0.685	0.237	0.650	1e-85
Q6GMY9	971	Exportin-2 OS=Xenopus lae	N/A	N/A	0.685	0.237	0.646	2e-85
Q9XZU1	975	Exportin-2 OS=Drosophila	yes	N/A	0.685	0.236	0.626	7e-83
Q8AY73	971	Exportin-2 OS=Oreochromis	yes	N/A	0.685	0.237	0.655	9e-83
Q9ERK4	971	Exportin-2 OS=Mus musculu	yes	N/A	0.685	0.237	0.637	3e-82
P55060	971	Exportin-2 OS=Homo sapien	yes	N/A	0.685	0.237	0.637	3e-82
A5D785	971	Exportin-2 OS=Bos taurus	yes	N/A	0.685	0.237	0.637	3e-82
Q9PTU3	971	Exportin-2 OS=Pagrus majo	N/A	N/A	0.685	0.237	0.646	6e-82
Q5R9J2	971	Exportin-2 OS=Pongo abeli	yes	N/A	0.685	0.237	0.633	1e-81
Q9ZPY7	972	Exportin-2 OS=Arabidopsis	yes	N/A	0.786	0.272	0.367	3e-46

>sp|Q7SZC2|XPO2_DANRE Exportin-2 OS=Danio rerio GN=cse1l PE=2 SV=1

 Score =  317 bits (811), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 182/232 (78%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYP+L+LT++E++  ++ IR+  AV FKNY+KRNW +VEDEP+KI
Sbjct: 26  RRPAEKFLESVEGNQNYPILLLTVLEKSQNEV-IRVCSAVTFKNYIKRNWRIVEDEPNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
              DR AIK  I++LMLTSPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct: 85  SDPDRTAIKANIVNLMLTSPEQIQKQLSDAISIIGREDFPLKWPDLLTEMVNRFQSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           IINGVL TAHSLFKRYRHEFKS +LW+EIK VLD FA+P TELFKATI L   H  +  A
Sbjct: 145 IINGVLRTAHSLFKRYRHEFKSNELWSEIKLVLDTFAQPLTELFKATIELCQTHATDINA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           LKV+++SL +  K+FYSLNFQDLPE+FEDNM  WM   HNLL  D   L+TD
Sbjct: 205 LKVLFSSLTLISKLFYSLNFQDLPEFFEDNMETWMTNFHNLLTLDNKLLQTD 256

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.
Danio rerio (taxid: 7955)

>sp|Q6GMY9|XPO2_XENLA Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1

 Score =  316 bits (809), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 150/232 (64%), Positives = 182/232 (78%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E +LESVE NQNYPLL+LTLVER+  D  I++  AV FKNY+KRNW +VEDE +KI
Sbjct: 26  RRPAEKYLESVEGNQNYPLLLLTLVERSQ-DNVIKVCSAVTFKNYIKRNWRIVEDESNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
             +DR A+K  I++LML SPE IQKQLSDA +IIG+ DFP KWP+L+T+MV +F +GDFH
Sbjct: 85  CEADRIAVKSSIINLMLRSPEQIQKQLSDAISIIGREDFPQKWPNLLTEMVNRFQSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFKRYRHEFKS +LWTEIK VLD FA P T+LFKATI L   H ++  A
Sbjct: 145 VINGVLHTAHSLFKRYRHEFKSSELWTEIKLVLDTFAGPLTDLFKATIELCNTHANDVGA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           LKV+++SL +  K+F+SLNFQDLPE+FEDNM  WM   HNLL  D   L+TD
Sbjct: 205 LKVLFSSLNLIAKLFHSLNFQDLPEFFEDNMETWMTNFHNLLTLDNKLLQTD 256

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Xenopus laevis (taxid: 8355)

>sp|Q9XZU1|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2

 Score =  307 bits (787), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 146/233 (62%), Positives = 175/233 (75%), Gaps = 2/233 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWP--LVEDEPD 109
           R P E  LES E  QNYP+L+L L+++A +DMT R+AGA+AFKNY+KRNW   L  D PD
Sbjct: 26  RRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTRVAGAIAFKNYIKRNWAAHLDSDGPD 85

Query: 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
           +IH SDR  IK LI+ LML SP A+QKQLSDA +IIGK DFP KWP LI +MV +F +GD
Sbjct: 86  RIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSIIGKYDFPKKWPQLIDEMVERFASGD 145

Query: 170 FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNP 229
           F++INGVL TAHSLFKRYR+EFKSQ LW EIKFVLD  AKP T+L +A + L   H++N 
Sbjct: 146 FNVINGVLQTAHSLFKRYRYEFKSQALWEEIKFVLDRMAKPLTDLLQAKMQLTKVHENNA 205

Query: 230 TALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
            ALKVIY SLV+  K+F+SLN QDLPE+FEDN+  WM A    L  DVP LRT
Sbjct: 206 GALKVIYGSLVLVNKVFFSLNSQDLPEFFEDNINTWMGAFIQQLAADVPSLRT 258

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Drosophila melanogaster (taxid: 7227)

>sp|Q8AY73|XPO2_ORENI Exportin-2 OS=Oreochromis niloticus GN=cse1l PE=2 SV=1

 Score =  307 bits (786), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 152/232 (65%), Positives = 180/232 (77%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+LTL+E++  D  IR+  AV FKNY+KRNW +VEDEP+KI
Sbjct: 26  RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIRVCAAVTFKNYIKRNWRIVEDEPNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
              DR A+K  I++LML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MVA+F +GDFH
Sbjct: 85  SDPDRTAVKANIVNLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVARFRSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           IINGVL TAHSLFKRYRHEFKS +LW+EIK VLD FA P TELFKATI L   H  +  A
Sbjct: 145 IINGVLRTAHSLFKRYRHEFKSNELWSEIKLVLDTFALPLTELFKATIELCQTHATDVNA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           LKV+++SL +  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct: 205 LKVLFSSLTLIAKLFYSLNFQDLPEFFEDNMETWMTNFHGLLTLDNKLLQTD 256

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Oreochromis niloticus (taxid: 8128)

>sp|Q9ERK4|XPO2_MOUSE Exportin-2 OS=Mus musculus GN=Cse1l PE=2 SV=1

 Score =  305 bits (782), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 182/232 (78%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct: 26  RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
             +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct: 85  CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct: 145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct: 205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

Export receptor for importin-alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates (cargos) have been released into the nucleoplasm. In the nucleus binds cooperatively to importin-alpha and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the importin-alpha from the export receptor. CSE1L/XPO2 then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|P55060|XPO2_HUMAN Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3

 Score =  305 bits (782), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 182/232 (78%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct: 26  RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
             +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct: 85  CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct: 145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct: 205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

Export receptor for importin-alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates (cargos) have been released into the nucleoplasm. In the nucleus binds cooperatively to importin-alpha and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the importin-alpha from the export receptor. CSE1L/XPO2 then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

>sp|A5D785|XPO2_BOVIN Exportin-2 OS=Bos taurus GN=CSE1L PE=2 SV=1

 Score =  305 bits (782), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 182/232 (78%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct: 26  RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
             +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct: 85  CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct: 145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct: 205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

Export receptor for importin-alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates (cargos) have been released into the nucleoplasm. In the nucleus binds cooperatively to importin-alpha and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the importin-alpha from the export receptor. CSE1L/XPO2 then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q9PTU3|XPO2_PAGMA Exportin-2 OS=Pagrus major GN=cse1l PE=2 SV=1

 Score =  304 bits (779), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 150/232 (64%), Positives = 179/232 (77%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+LTL+E++  D  IR+  AV FKNY+KRNW ++EDEP+K+
Sbjct: 26  RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIRVCAAVTFKNYIKRNWRVIEDEPNKV 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
              DR AIK  I++LML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct: 85  SDPDRTAIKANIVNLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVTRFRSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           IINGVL TAHSLFKRYRHEFKS +LW+EIK VLD FA P TELFKATI L   H  +  A
Sbjct: 145 IINGVLRTAHSLFKRYRHEFKSNELWSEIKLVLDTFALPLTELFKATIELCQTHATDVNA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           LKV+++SL +  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct: 205 LKVLFSSLTLISKLFYSLNFQDLPEFFEDNMETWMTNFHGLLTLDNKLLQTD 256

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Pagrus major (taxid: 143350)

>sp|Q5R9J2|XPO2_PONAB Exportin-2 OS=Pongo abelii GN=CSE1L PE=2 SV=1

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/232 (63%), Positives = 181/232 (78%), Gaps = 1/232 (0%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct: 26  RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
             +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct: 85  CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVL TAHSLFKRYRHEFKS +LWTE K VLD FA P T LFKATI L   H ++ +A
Sbjct: 145 VINGVLRTAHSLFKRYRHEFKSNELWTETKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct: 205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

Export receptor for importin-alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates (cargos) have been released into the nucleoplasm. In the nucleus binds cooperatively to importin-alpha and to the GTPase Ran in its active GTP-bound form. Docking of this trimeric complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the importin-alpha from the export receptor. CSE1L/XPO2 then return to the nuclear compartment and mediate another round of transport. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|Q9ZPY7|XPO2_ARATH Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/280 (36%), Positives = 154/280 (55%), Gaps = 15/280 (5%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNW-PLVEDEP 108
           E R   E  L       NY L +L LV    +D   R A AV FKN+++  W P  +   
Sbjct: 24  EPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTRHAAAVNFKNHLRSRWHPAGDSGI 83

Query: 109 DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFG-- 166
             I  S++E IK LI+ LML++   IQ QLS+A  +IGK DFP  WP+L+ +++A     
Sbjct: 84  SPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEALTVIGKHDFPKAWPALLPELIANLQNA 143

Query: 167 --TGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLV-- 222
              GD+  +NG+L TA S+FK++ +E+++  L+ ++K+ LDNFA P TE+F  T +L+  
Sbjct: 144 ALAGDYVSVNGILGTASSIFKKFSYEYRTDALFVDLKYCLDNFAAPLTEIFLKTSSLIDS 203

Query: 223 -GEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
                 +P  LK ++ S  + C IFYSLNFQDLPE+FED+M  WM      L ++ P L 
Sbjct: 204 AASSGGSPPILKPLFESQRLCCTIFYSLNFQDLPEFFEDHMKEWMGEFKKYLSSNYPALE 263

Query: 282 TDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMG 321
                  S    ++ V+  R A C+ +    +  E++  G
Sbjct: 264 -------STEEGLTLVDDLRAAICENINHYIEKNEEEFQG 296

Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
156543249	967	PREDICTED: exportin-2-like [Nasonia vitr	0.632	0.220	0.714	1e-94
322799344	967	hypothetical protein SINV_80183 [Solenop	0.691	0.240	0.694	6e-94
307186270	927	Exportin-2 [Camponotus floridanus]	0.685	0.249	0.705	4e-93
66542696	967	PREDICTED: exportin-2 [Apis mellifera]	0.685	0.238	0.692	4e-93
350399795	967	PREDICTED: exportin-2-like [Bombus impat	0.685	0.238	0.701	5e-93
383850074	966	PREDICTED: exportin-2-like [Megachile ro	0.685	0.239	0.705	5e-93
380016922	967	PREDICTED: exportin-2-like [Apis florea]	0.685	0.238	0.692	6e-93
340712467	967	PREDICTED: exportin-2-like [Bombus terre	0.685	0.238	0.701	8e-93
91094115	969	PREDICTED: similar to importin (ran-bind	0.774	0.269	0.604	6e-91
357619990	967	putative importin [Danaus plexippus]	0.718	0.250	0.658	9e-91

>gi|156543249|ref|XP_001606668.1| PREDICTED: exportin-2-like [Nasonia vitripennis]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/231 (71%), Positives = 189/231 (81%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV++ DVD+TIRIAGA+AFKNYVKRNW + ED  DKI
Sbjct: 26  RRPAEKFLESVELNQNYPLLLLHLVDKPDVDITIRIAGAIAFKNYVKRNWKVEEDSVDKI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           H+ DR+AIK LI++LML SP+AIQKQLSDA ++IGK DFPDKWP LI  MV  F TGDFH
Sbjct: 86  HSQDRDAIKRLIINLMLHSPDAIQKQLSDAVSVIGKHDFPDKWPELIDQMVGFFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFKRYR+EFKSQ LWTEIK+VLD FAKP T+LF AT+NL   H +N  A
Sbjct: 146 VINGVLHTAHSLFKRYRYEFKSQVLWTEIKYVLDKFAKPLTDLFLATMNLTQVHANNVEA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           LKVIY+SL + CK+FYSLNFQDLPE+FEDNM  WM   H LL  +VP LRT
Sbjct: 206 LKVIYSSLTILCKVFYSLNFQDLPEFFEDNMASWMTNFHTLLTVNVPSLRT 256

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799344|gb|EFZ20732.1| hypothetical protein SINV_80183 [Solenopsis invicta]

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 193/239 (80%)

Query: 43  HDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWP 102
           H  N  +  R P E FLESVE NQNYPLL+L LV++++V++TIRIAGAVAFKNYVKRNW 
Sbjct: 17  HTLNPDVNVRRPAEKFLESVEVNQNYPLLLLHLVDKSEVNITIRIAGAVAFKNYVKRNWK 76

Query: 103 LVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMV 162
           + ED  D+IH  DR+AIK LI++LML SP++IQKQLSDA +IIGK DFP+KWP LI  MV
Sbjct: 77  VEEDSVDRIHIQDRDAIKKLIVNLMLHSPDSIQKQLSDAVSIIGKYDFPNKWPELIDQMV 136

Query: 163 AKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLV 222
            KF TGDFH+INGVLHTAHSLFKRYR+EFKS+ LWTEIKFVLD FAKP T+LF AT+NL 
Sbjct: 137 EKFNTGDFHVINGVLHTAHSLFKRYRYEFKSESLWTEIKFVLDKFAKPLTDLFLATMNLT 196

Query: 223 GEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
             H +N  ALKVIYNSLV+ CK+FYSLNFQDLPE+FEDNM  WM   H LL  DVP L+
Sbjct: 197 QVHANNTEALKVIYNSLVILCKVFYSLNFQDLPEFFEDNMESWMTNFHTLLHVDVPSLQ 255

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186270|gb|EFN71933.1| Exportin-2 [Camponotus floridanus]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 190/231 (82%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV+++++++TIRIAGAVAFKNYVKRNW + ED  D+I
Sbjct: 26  RRPAEKFLESVEVNQNYPLLLLHLVDKSEINITIRIAGAVAFKNYVKRNWKVDEDSVDRI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           H  DR+AIK LI++LML SP++IQKQLSDA +IIGK DFP+KWP LI  MV KF TGDFH
Sbjct: 86  HVQDRDAIKKLIINLMLHSPDSIQKQLSDAVSIIGKYDFPNKWPELIDQMVEKFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           IINGVLHTAHSLFKRYR+EFKS+ LW EIKFVLD FAKP T+LF AT+NL   H +N  A
Sbjct: 146 IINGVLHTAHSLFKRYRYEFKSETLWREIKFVLDKFAKPLTDLFLATMNLTQVHANNVDA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           L+VIYNSLV+ CK+FYSLNFQDLPE+FEDNM  WM   H LL  DVP L+T
Sbjct: 206 LRVIYNSLVILCKVFYSLNFQDLPEFFEDNMEAWMRNFHTLLNVDVPSLQT 256

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66542696|ref|XP_395332.2| PREDICTED: exportin-2 [Apis mellifera]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 160/231 (69%), Positives = 194/231 (83%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV+++++++TIRIAGAVAFKNY+KRNW + ED  D+I
Sbjct: 26  RRPAEKFLESVEVNQNYPLLLLHLVDKSEINITIRIAGAVAFKNYIKRNWKVGEDSVDRI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           HA DREAIK LI++LML SP+++QKQLSDA +I+GK DFP+KWP LI  MV KF TGDFH
Sbjct: 86  HAQDREAIKKLIVNLMLHSPDSVQKQLSDAVSIVGKYDFPNKWPELIDQMVEKFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFK+YR+EFKSQ LWTEIKFVLD FAKP T+LF AT+NL+  H +N  A
Sbjct: 146 VINGVLHTAHSLFKKYRYEFKSQTLWTEIKFVLDRFAKPLTDLFVATMNLMQVHANNIDA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           LK+IY+SLV+  K+FYSLNFQDLPE+FEDNM +WM   H LL TDVP L++
Sbjct: 206 LKIIYSSLVILSKVFYSLNFQDLPEFFEDNMAIWMRNFHILLNTDVPSLQS 256

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399795|ref|XP_003485641.1| PREDICTED: exportin-2-like [Bombus impatiens]

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 162/231 (70%), Positives = 194/231 (83%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV+++++++TIRIAGAVAFKNYVKRNW + ED  D+I
Sbjct: 26  RRPAEKFLESVEINQNYPLLLLHLVDKSEINITIRIAGAVAFKNYVKRNWKVGEDSVDRI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           HA DR+AIK LI++LML SP+++QKQLSDA +I+GK DFP+KWP LI  MV KF TGDFH
Sbjct: 86  HAQDRDAIKKLIVNLMLHSPDSVQKQLSDAVSIVGKYDFPNKWPELIDQMVEKFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFKRYR+EFKSQ LWTEIKFVLD FAKP T+LF AT+NL+  H +N  A
Sbjct: 146 VINGVLHTAHSLFKRYRYEFKSQSLWTEIKFVLDRFAKPLTDLFVATMNLMQVHANNIDA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           LKVIY+SLV+  K+FYSLNFQDLPE+FEDNM VWM   H LL T+VP L++
Sbjct: 206 LKVIYSSLVILSKVFYSLNFQDLPEFFEDNMAVWMRNFHILLNTNVPSLQS 256

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850074|ref|XP_003700642.1| PREDICTED: exportin-2-like [Megachile rotundata]

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 191/231 (82%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV+++++++TIRI GAVAFKNYVKRNW + ED  D+I
Sbjct: 26  RRPAERFLESVEVNQNYPLLLLHLVDKSEINITIRITGAVAFKNYVKRNWKVEEDSVDRI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           HA DREAIK LI++LML SP++IQKQLSDA +IIGK DFP+KWP LI  MV KF TGDFH
Sbjct: 86  HAQDREAIKKLIVNLMLHSPDSIQKQLSDAVSIIGKYDFPNKWPELIDQMVEKFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFK+YR+EFKSQ LWTEIKFVLD FAKP T+LF AT+NL   H +N  A
Sbjct: 146 VINGVLHTAHSLFKKYRYEFKSQSLWTEIKFVLDRFAKPLTDLFVATMNLTQVHANNVDA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           LKVIY+SLV+  K+FYSLNFQDLPE+FEDNM VWM   H LL T+VP L +
Sbjct: 206 LKVIYSSLVILSKVFYSLNFQDLPEFFEDNMTVWMTNFHTLLNTNVPSLHS 256

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016922|ref|XP_003692417.1| PREDICTED: exportin-2-like [Apis florea]

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 160/231 (69%), Positives = 193/231 (83%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV+++++++TIRIAGAVAFKNY+KRNW + ED  D+I
Sbjct: 26  RRPAEKFLESVEVNQNYPLLLLHLVDKSEINITIRIAGAVAFKNYIKRNWKVGEDSVDRI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           HA DREAIK LI++LML SP+++QKQLSDA +I+GK DFP+KWP LI  MV KF TGDFH
Sbjct: 86  HAQDREAIKKLIVNLMLHSPDSVQKQLSDAVSIVGKYDFPNKWPELIDQMVEKFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFK+YR+EFKSQ LWTEIKFVLD FAKP T+LF AT+NL+  H +N  A
Sbjct: 146 VINGVLHTAHSLFKKYRYEFKSQTLWTEIKFVLDRFAKPLTDLFVATMNLMQVHANNVDA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           LK+IY+SLV+  K+FYSLNFQDLPE+FEDNM  WM   H LL TDVP L++
Sbjct: 206 LKIIYSSLVILSKVFYSLNFQDLPEFFEDNMATWMRNFHILLNTDVPSLQS 256

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712467|ref|XP_003394781.1| PREDICTED: exportin-2-like [Bombus terrestris]

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 162/231 (70%), Positives = 194/231 (83%)

Query: 52  RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
           R P E FLESVE NQNYPLL+L LV+++++++TIRIAGAVAFKNYVKRNW + ED  D+I
Sbjct: 26  RRPAEKFLESVEINQNYPLLLLHLVDKSEINITIRIAGAVAFKNYVKRNWKVGEDSVDRI 85

Query: 112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
           HA DR+AIK LI++LML SP+++QKQLSDA +I+GK DFP+KWP LI  MV KF TGDFH
Sbjct: 86  HAQDRDAIKKLIVNLMLHSPDSVQKQLSDAVSIVGKYDFPNKWPELIDQMVDKFNTGDFH 145

Query: 172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
           +INGVLHTAHSLFKRYR+EFKSQ LWTEIKFVLD FAKP T+LF AT+NL+  H +N  A
Sbjct: 146 VINGVLHTAHSLFKRYRYEFKSQSLWTEIKFVLDRFAKPLTDLFVATMNLMQVHANNIDA 205

Query: 232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
           LKVIY+SLV+  K+FYSLNFQDLPE+FEDNM VWM   H LL T+VP L++
Sbjct: 206 LKVIYSSLVILSKVFYSLNFQDLPEFFEDNMAVWMRNFHILLNTNVPSLQS 256

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094115|ref|XP_968023.1| PREDICTED: similar to importin (ran-binding protein) [Tribolium castaneum] gi|270010891|gb|EFA07339.1| hypothetical protein TcasGA2_TC015935 [Tribolium castaneum]

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 162/268 (60%), Positives = 202/268 (75%), Gaps = 7/268 (2%)

Query: 51  SRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDK 110
           +R P E FLE VE NQNYPLL+L LV + +VD+TIRIAGA+AFKNY+KRNW + ED+ D+
Sbjct: 25  TRRPAEKFLEGVEVNQNYPLLLLNLVHKPEVDVTIRIAGAIAFKNYIKRNWSIEEDQNDR 84

Query: 111 IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDF 170
           IH SDR AIK LI+ LML+SPEAIQKQLSDA +IIGK+DFP KWP LIT+MV KF TGDF
Sbjct: 85  IHESDRLAIKNLIVSLMLSSPEAIQKQLSDAISIIGKTDFPLKWPELITEMVDKFATGDF 144

Query: 171 HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPT 230
           H+INGVL TAHSLFK+YR+EFKS +LW EIK+VLD  AKP T+L  AT+ L   H+++ +
Sbjct: 145 HVINGVLQTAHSLFKKYRYEFKSNELWMEIKYVLDKLAKPLTDLLMATMGLTQAHQNDVS 204

Query: 231 ALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSF 290
           ALK+IY+SLV+ CK+FYSLN+QDLPE+FEDNM  WM   H LL  +V  L+      NS 
Sbjct: 205 ALKIIYHSLVLICKVFYSLNYQDLPEFFEDNMATWMSNFHTLLTVEVKVLQ------NSS 258

Query: 291 RRFISDVETRRRAACDFVKILC-KYMED 317
           +     +E  +  ACD + +   KY E+
Sbjct: 259 QDEAGVIEQLKSQACDNIALYAQKYDEE 286

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619990|gb|EHJ72342.1| putative importin [Danaus plexippus]

 Score =  339 bits (870), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 162/246 (65%), Positives = 188/246 (76%), Gaps = 4/246 (1%)

Query: 38  QGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYV 97
           Q   N D NI    R P E FLE VE NQNY +L+L L+++   D TIR+A AV FKNY+
Sbjct: 16  QQTLNPDPNI----RRPAEKFLEGVEVNQNYAILLLHLIDKDTADPTIRVAAAVTFKNYI 71

Query: 98  KRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSL 157
           KRNWP+ ED  D+IHASDR  IK LI+ LML SPEAIQ+Q SDA +IIGKSDFP+KWP L
Sbjct: 72  KRNWPVEEDGVDRIHASDRATIKTLIVSLMLKSPEAIQRQFSDAVSIIGKSDFPEKWPGL 131

Query: 158 ITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKA 217
           I++MV KF TGDFH+INGVL TAHSLFKRYR+EFKSQKLW EIK VL+N AKP T+LF  
Sbjct: 132 ISEMVEKFATGDFHVINGVLRTAHSLFKRYRYEFKSQKLWEEIKHVLENIAKPLTDLFVV 191

Query: 218 TINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDV 277
           TI+L  +H  N  ALKVIY SLV+ CK+FYSLN+QDLPE+FEDNM +WMP L NLL   V
Sbjct: 192 TIDLTNKHAGNAQALKVIYGSLVLICKVFYSLNYQDLPEFFEDNMPIWMPNLLNLLQVTV 251

Query: 278 PCLRTD 283
           PCL  D
Sbjct: 252 PCLADD 257

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
UNIPROTKB|F8W904	915	CSE1L "Exportin-2" [Homo sapie	0.721	0.265	0.613	8.1e-87
UNIPROTKB|A5D785	971	CSE1L "Exportin-2" [Bos taurus	0.685	0.237	0.637	6.8e-79
UNIPROTKB|F1MWN1	971	CSE1L "Exportin-2" [Bos taurus	0.685	0.237	0.637	6.8e-79
UNIPROTKB|Q58DL4	574	CSE1L "CSE1 chromosome segrega	0.685	0.402	0.637	6.8e-79
UNIPROTKB|F1Q1V0	973	CSE1L "Uncharacterized protein	0.685	0.237	0.637	6.8e-79
UNIPROTKB|P55060	971	CSE1L "Exportin-2" [Homo sapie	0.685	0.237	0.637	6.8e-79
MGI|MGI:1339951	971	Cse1l "chromosome segregation	0.685	0.237	0.637	6.8e-79
RGD|1307536	971	Cse1l "CSE1 chromosome segrega	0.685	0.237	0.633	8.7e-79
ZFIN|ZDB-GENE-990603-1	971	cse1l "chromosome segregation	0.685	0.237	0.650	1.1e-78
FB|FBgn0022213	975	Cas "CAS/CSE1 segregation prot	0.685	0.236	0.626	4.5e-75

UNIPROTKB|F8W904 CSE1L "Exportin-2" [Homo sapiens (taxid:9606)]

 Score = 797 (285.6 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
 Identities = 151/246 (61%), Positives = 190/246 (77%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNSFR 291
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD   V++  
Sbjct:   205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD--LVSNAI 262

Query:   292 RFISDV 297
             +F++ V
Sbjct:   263 QFLASV 268

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|A5D785 CSE1L "Exportin-2" [Bos taurus (taxid:9913)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F1MWN1 CSE1L "Exportin-2" [Bos taurus (taxid:9913)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|Q58DL4 CSE1L "CSE1 chromosome segregation 1-like protein isoform a" [Bos taurus (taxid:9913)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    28 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 86

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    87 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 146

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   147 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 206

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   207 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 258

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F1Q1V0 CSE1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    28 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 86

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    87 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 146

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   147 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 206

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   207 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 258

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|P55060 CSE1L "Exportin-2" [Homo sapiens (taxid:9606)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0008262 "importin-alpha export receptor activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1339951 Cse1l "chromosome segregation 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|1307536 Cse1l "CSE1 chromosome segregation 1-like (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 147/232 (63%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYPLL+LTL+E++  D  I++  +V FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPLLLLTLLEKSQ-DNVIKVCASVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
               +DR AIK  I+HLML+SPE IQKQLSDA +I+G+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 CEADRVAIKANIVHLMLSSPEQIQKQLSDAISIVGREDFPQKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             +INGVL TAHSLFKRYRHEFKS +LWTEIK VLD FA P T LFKATI L   H ++ +A
Sbjct:   145 VINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             L+++++SL++  K+FYSLNFQDLPE+FEDNM  WM   H LL  D   L+TD
Sbjct:   205 LRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD 256

GO:0005643 "nuclear pore" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

ZFIN|ZDB-GENE-990603-1 cse1l "chromosome segregation 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 151/232 (65%), Positives = 182/232 (78%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI 111
             R P E FLESVE NQNYP+L+LT++E++  ++ IR+  AV FKNY+KRNW +VEDEP+KI
Sbjct:    26 RRPAEKFLESVEGNQNYPILLLTVLEKSQNEV-IRVCSAVTFKNYIKRNWRIVEDEPNKI 84

Query:   112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH 171
                DR AIK  I++LMLTSPE IQKQLSDA +IIG+ DFP KWP L+T+MV +F +GDFH
Sbjct:    85 SDPDRTAIKANIVNLMLTSPEQIQKQLSDAISIIGREDFPLKWPDLLTEMVNRFQSGDFH 144

Query:   172 IINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA 231
             IINGVL TAHSLFKRYRHEFKS +LW+EIK VLD FA+P TELFKATI L   H  +  A
Sbjct:   145 IINGVLRTAHSLFKRYRHEFKSNELWSEIKLVLDTFAQPLTELFKATIELCQTHATDINA 204

Query:   232 LKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             LKV+++SL +  K+FYSLNFQDLPE+FEDNM  WM   HNLL  D   L+TD
Sbjct:   205 LKVLFSSLTLISKLFYSLNFQDLPEFFEDNMETWMTNFHNLLTLDNKLLQTD 256

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007589 "body fluid secretion" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0022213 Cas "CAS/CSE1 segregation protein" [Drosophila melanogaster (taxid:7227)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 146/233 (62%), Positives = 175/233 (75%)

Query:    52 RSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWP--LVEDEPD 109
             R P E  LES E  QNYP+L+L L+++A +DMT R+AGA+AFKNY+KRNW   L  D PD
Sbjct:    26 RRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTRVAGAIAFKNYIKRNWAAHLDSDGPD 85

Query:   110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
             +IH SDR  IK LI+ LML SP A+QKQLSDA +IIGK DFP KWP LI +MV +F +GD
Sbjct:    86 RIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSIIGKYDFPKKWPQLIDEMVERFASGD 145

Query:   170 FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNP 229
             F++INGVL TAHSLFKRYR+EFKSQ LW EIKFVLD  AKP T+L +A + L   H++N 
Sbjct:   146 FNVINGVLQTAHSLFKRYRYEFKSQALWEEIKFVLDRMAKPLTDLLQAKMQLTKVHENNA 205

Query:   230 TALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRT 282
              ALKVIY SLV+  K+F+SLN QDLPE+FEDN+  WM A    L  DVP LRT
Sbjct:   206 GALKVIYGSLVLVNKVFFSLNSQDLPEFFEDNINTWMGAFIQQLAADVPSLRT 258

GO:0006915 "apoptotic process" evidence=ISS

GO:0006606 "protein import into nucleus" evidence=NAS

GO:0008262 "importin-alpha export receptor activity" evidence=NAS

GO:0006611 "protein export from nucleus" evidence=NAS;IMP

GO:0005634 "nucleus" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8AY73	XPO2_ORENI	No assigned EC number	0.6551	0.6854	0.2378	yes	N/A
A5D785	XPO2_BOVIN	No assigned EC number	0.6379	0.6854	0.2378	yes	N/A
Q9XZU1	XPO2_DROME	No assigned EC number	0.6266	0.6854	0.2369	yes	N/A
P55060	XPO2_HUMAN	No assigned EC number	0.6379	0.6854	0.2378	yes	N/A
Q9ERK4	XPO2_MOUSE	No assigned EC number	0.6379	0.6854	0.2378	yes	N/A
Q7SZC2	XPO2_DANRE	No assigned EC number	0.6508	0.6854	0.2378	yes	N/A
Q5R9J2	XPO2_PONAB	No assigned EC number	0.6336	0.6854	0.2378	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	337
pfam08506	370	pfam08506, Cse1, Cse1	1e-45
COG5657	947	COG5657, CSE1, CAS/CSE protein involved in chromos	3e-38
smart00913	67	smart00913, IBN_N, Importin-beta N-terminal domain	2e-09
pfam03810	71	pfam03810, IBN_N, Importin-beta N-terminal domain	3e-07
COG5656	970	COG5656, SXM1, Importin, protein involved in nucle	2e-06
pfam08506	370	pfam08506, Cse1, Cse1	8e-04

>gnl|CDD|219873 pfam08506, Cse1, Cse1

 Score =  158 bits (403), Expect = 1e-45
 Identities = 51/102 (50%), Positives = 70/102 (68%)

Query: 183 LFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVS 242
           +FKR+R  F+S +L+ EIK VLD FA+PF +L +AT  L+  +K+N  ALK+++  L++ 
Sbjct: 1   IFKRWRPLFRSDELFLEIKLVLDKFAEPFLDLLQATDELIEANKNNKAALKILFEVLLLL 60

Query: 243 CKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDS 284
           CK+FY LN QD+PE+FEDNM  WM   H  L  D P L TD 
Sbjct: 61  CKLFYDLNCQDIPEFFEDNMSEWMGIFHKYLTYDNPLLETDD 102

This domain is present in Cse1 nuclear export receptor proteins. Cse1 mediates the nuclear export of importin alpha. This domain contains HEAT repeats. Length = 370

>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

 Score =  144 bits (365), Expect = 3e-38
 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 5/238 (2%)

Query: 46  NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE 105
           +    S    E  L   E    + L +L++   A   M++R A  + FKNY+ ++W   E
Sbjct: 15  SPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHW--RE 72

Query: 106 DEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKF 165
           +  + I   +   I+  +  L+++S   +Q Q + A + I + DFPD+WP+L+ D+++  
Sbjct: 73  ENGNSILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLL 132

Query: 166 GTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEH 225
              D       L   H +FKR R  F+S  L+ EI  VL +   PF        ++    
Sbjct: 133 SEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMS--E 190

Query: 226 KDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
             + + L  ++   +   + +Y L FQD+PE+FEDN+  +M     LL    P L+ D
Sbjct: 191 NLDESLLS-LFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNPVLQKD 247

Length = 947

>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 56  ENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD 115
           E  LE  + +  + LL+L ++  ++    +R   A+  KN + R W         +   +
Sbjct: 2   EKQLEQFQKSPGFWLLLLEILANSEDQY-VRQLAAITLKNKITRRW-------SSLPEEE 53

Query: 116 REAIKGLILHLMLT 129
           +E IK  +L L+L+
Sbjct: 54  KEEIKNSLLELLLS 67

Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Length = 67

>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 56  ENFLESVETNQ-NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS 114
           E  LE  E     +   +L ++     D+ +R   A+  KN + R+W         +   
Sbjct: 2   EKQLEQFEKQDPGFWSKLLQILSDTSSDLQVRQLAALYLKNLITRHW-----NQLSLPPE 56

Query: 115 DREAIKGLILHLMLT 129
           ++E I+  +L+L+ +
Sbjct: 57  EKEQIRNNLLNLLGS 71

Length = 71

>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 21/223 (9%)

Query: 43  HDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWP 102
            D       R+  E  L+ +E    + + +L +  + + D+ ++++ A+ FKN + R+W 
Sbjct: 15  ADAGK----RTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWS 70

Query: 103 LVEDEPDK--IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITD 160
              D+  K    +  ++ +   IL + L SPE  +  L+     I   D P     L   
Sbjct: 71  SKRDDGIKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWGLFPK 130

Query: 161 MVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATIN 220
                 + + + +   L     LFK YR ++  ++          +     T LF     
Sbjct: 131 AANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQ---------VDILMLITALFPILEK 181

Query: 221 LVG--EHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDN 261
           + G  E + N  +++ +   L++  K F S+ +  LP++    
Sbjct: 182 VGGNLESQGNYGSVETLM--LIL--KSFKSVCYYSLPDFLSAI 220

Length = 970

>gnl|CDD|219873 pfam08506, Cse1, Cse1

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 30/98 (30%)

Query: 224 EHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTD 283
           E  +N + LK I   +V+      +L   D  E FED+ + ++                 
Sbjct: 177 ELFNNESVLKQICEKVVLPN---VTLRESDE-ELFEDDPIEYI----------------- 215

Query: 284 SIFVNSFRRFI--SDVETRRRAACDFVKILCKYMEDKM 319
                  RR +  SD +TRRRAA D ++ L +  E  +
Sbjct: 216 -------RRDLEGSDSDTRRRAATDLLRGLKEKFEALV 246

This domain is present in Cse1 nuclear export receptor proteins. Cse1 mediates the nuclear export of importin alpha. This domain contains HEAT repeats. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG1992|consensus	960		100.0
KOG1991|consensus	1010		100.0
COG5656	970	SXM1 Importin, protein involved in nuclear import	100.0
COG5657	947	CSE1 CAS/CSE protein involved in chromosome segreg	100.0
KOG2274|consensus	1005		99.94
KOG1993|consensus	978		99.92
KOG2171|consensus	1075		99.85
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	99.8
KOG2023|consensus	885		99.77
KOG1241|consensus	859		99.65
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.52
PF03810	77	IBN_N: Importin-beta N-terminal domain; InterPro:	99.49
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	99.31
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.07
KOG2020|consensus	1041		98.86
KOG2021|consensus	980		98.24
KOG1410|consensus	1082		98.05
KOG2022|consensus	982		97.71
KOG2081|consensus	559		97.3
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.04
KOG1992|consensus	960		94.75
PF04510	174	DUF577: Family of unknown function (DUF577); Inter	94.48
PTZ00429	746	beta-adaptin; Provisional	93.66
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.73
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	92.55
KOG2171|consensus	1075		92.22
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	92.2
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	92.03
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	91.41
PRK09687	280	putative lyase; Provisional	90.76
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	90.75
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	90.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.66
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	90.45
KOG2023|consensus	885		90.44
KOG1241|consensus	859		90.42
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	88.61
KOG1993|consensus	978		88.38
KOG1824|consensus	1233		87.33
KOG1242|consensus	569		87.04
PRK09687	280	putative lyase; Provisional	85.99
KOG1991|consensus	1010		85.64
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	85.54
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	84.87
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	82.81
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	82.35
PF13925	164	Katanin_con80: con80 domain of Katanin	81.88
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	81.82
PTZ00429	746	beta-adaptin; Provisional	80.28

>KOG1992|consensus

Probab=100.00  E-value=5.5e-50  Score=403.30  Aligned_cols=288  Identities=49%  Similarity=0.829  Sum_probs=265.0

Q ss_pred             HHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          36 STQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        36 ~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      -+.+.|..+++||+++||.||+.|++.+.|+||...+|+++.+.+.|.++|.+|+++|||+||++|.+.++....|.+++
T Consensus         6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~   85 (960)
T KOG1992|consen    6 TLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEED   85 (960)
T ss_pred             HHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhH
Confidence            34556778889999999999999999999999999999999999999999999999999999999997766557899999


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy9795         116 REAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQK  195 (337)
Q Consensus       116 K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~  195 (337)
                      |+.||..|+.+|.+++..|+.|++++++.|+++|||++||+|+|+++..++++|.+...|.|.+.++|+|+||+++||++
T Consensus        86 ~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda  165 (960)
T KOG1992|consen   86 REQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA  165 (960)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhcc
Q psy9795         196 LWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVT  275 (337)
Q Consensus       196 l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~  275 (337)
                      ++.|++.+++.|..|++.+|...+.+.+.+.++...++..++.+.++||+||+++++|+|+|||||+..||+.|+.++..
T Consensus       166 L~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~  245 (960)
T KOG1992|consen  166 LWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTY  245 (960)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988888888889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHH-HHhhhhh---hhhccccccccc
Q psy9795         276 DVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKIL-CKYMEDK---MMGTSTAGAKDL  330 (337)
Q Consensus       276 ~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~-~k~~~~~---~~~~~~~~~~~~  330 (337)
                      +.|.+..|       ++..+.++-+|.++|++++.| .||-|+.   ++...++-|-.|
T Consensus       246 ~~p~le~~-------~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL  297 (960)
T KOG1992|consen  246 DNPLLESD-------EEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLL  297 (960)
T ss_pred             cCcccccC-------cccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Confidence            99988763       344677788999999999999 7776654   555555555443

>KOG1991|consensus

Probab=100.00  E-value=6.6e-46  Score=380.51  Aligned_cols=263  Identities=22%  Similarity=0.381  Sum_probs=233.1

Q ss_pred             hhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC--CCCCCCHHHH
Q psy9795          39 GVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED--EPDKIHASDR  116 (337)
Q Consensus        39 ~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~--~~~~i~~e~K  116 (337)
                      .++.++.+||++.|+.||++|++++++|||+..||+|+++.+++..|||+|+|||||.|.++|+..+.  .+..+++++|
T Consensus         8 ~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk   87 (1010)
T KOG1991|consen    8 QIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK   87 (1010)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence            34455566778999999999999999999999999999999999999999999999999999997642  2467999999


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy9795         117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKL  196 (337)
Q Consensus       117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l  196 (337)
                      ..||++|++.++++|..+|.|+.+|+..|.++|||++||++++.+.+++++++.+.+++||.||++++|.|||+  +++.
T Consensus        88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k--~~ee  165 (1010)
T KOG1991|consen   88 AVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWK--KDEE  165 (1010)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhc--cccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999995  7788


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHH--HHhHHHHHHHHHHhhc
Q psy9795         197 WTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYF--EDNMVVWMPALHNLLV  274 (337)
Q Consensus       197 ~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~--e~~l~~W~~~f~~iL~  274 (337)
                      |+++..+++.++|.+++++..+++.     ++.    ...+++++||||||++++.++|..+  .+.+..||++|+++++
T Consensus       166 R~~l~~~v~~~fP~il~~~~~ll~~-----~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~  236 (1010)
T KOG1991|consen  166 RQPLGEAVEELFPDILQIFNGLLSQ-----ESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILN  236 (1010)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhccc-----cch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHc
Confidence            8889999998888666665555442     121    2567899999999999999999988  4799999999999999


Q ss_pred             cCCCC--CCcc-----------------chhhhhhhhccchhHHHhhhHHHHHHHHHH
Q psy9795         275 TDVPC--LRTD-----------------SIFVNSFRRFISDVETRRRAACDFVKILCK  313 (337)
Q Consensus       275 ~~~p~--l~~d-----------------~~~~r~~~~~~~~~~~~k~~~~~~~~~~~k  313 (337)
                      +|+|.  +..|                 ++++|+|+|||++..+.++ -.+|.++|++
T Consensus       237 rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~-y~~Fa~~f~~  293 (1010)
T KOG1991|consen  237 RPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPE-YKEFAQMFLK  293 (1010)
T ss_pred             CCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchh-hHHHHHHHHH
Confidence            99994  2222                 7999999999999999966 6889888877

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-33  Score=279.90  Aligned_cols=262  Identities=21%  Similarity=0.362  Sum_probs=208.5

Q ss_pred             hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC--CC
Q psy9795          32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE--PD  109 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~--~~  109 (337)
                      +..+...+||    ++|+++|+.||++|++++++|||..+|++++++++++.+||++|+|||||.|.+.|+...+.  ..
T Consensus         4 ellqcf~qTl----dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~   79 (970)
T COG5656           4 ELLQCFLQTL----DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA   79 (970)
T ss_pred             HHHHHHHHHh----ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCC
Confidence            3444554555    55669999999999999999999999999999999999999999999999999999874332  12


Q ss_pred             CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795         110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       110 ~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr  188 (337)
                      -..++.|..++++++.....++...|+.+..++..|...||| +.|| |.|...+++.+++.++++.||.|+.++||.||
T Consensus        80 Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR  158 (970)
T COG5656          80 DEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR  158 (970)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence            344566666666677777777889999999999999999999 8999 99999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhccc--CCChhHHHHHHHHHHHHHHHhhhccccCChHHHH--HhHHH
Q psy9795         189 HEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEH--KDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFE--DNMVV  264 (337)
Q Consensus       189 ~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~--~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e--~~l~~  264 (337)
                      |+..  ..+..+..++..       +||.+.++.+..  .+|.    ...|++++|+|+|++.++.++|.++.  +.+..
T Consensus       159 wk~n--deq~di~~li~a-------lfpile~~g~nl~s~~ny----~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~s  225 (970)
T COG5656         159 WKYN--DEQVDILMLITA-------LFPILEKVGGNLESQGNY----GSVETLMLILKSFKSVCYYSLPDFLSAIETFSS  225 (970)
T ss_pred             hhcc--chHhhHHHHHHH-------hhHHHHHHhhccccCCch----hHHHHHHHHHHHHHHHHHhhCCHHHccchhhHH
Confidence            9743  333344444444       444444433221  1222    15688999999999999999999994  79999


Q ss_pred             HHHHHHHhhccCCCC--CCcc-----------------chhhhhhhhccchhHHHhhh-----HHHHHHHH
Q psy9795         265 WMPALHNLLVTDVPC--LRTD-----------------SIFVNSFRRFISDVETRRRA-----ACDFVKIL  311 (337)
Q Consensus       265 W~~~f~~iL~~~~p~--l~~d-----------------~~~~r~~~~~~~~~~~~k~~-----~~~~~~~~  311 (337)
                      |.+++++++++|.|.  +..|                 .++.|+|.|||.+..+.+..     .|+++..+
T Consensus       226 w~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~i  296 (970)
T COG5656         226 WFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMI  296 (970)
T ss_pred             HHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999995  2222                 58999999999988765432     55555555

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

Probab=100.00  E-value=6.7e-33  Score=283.07  Aligned_cols=265  Identities=26%  Similarity=0.417  Sum_probs=223.0

Q ss_pred             cccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795          41 PNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK  120 (337)
Q Consensus        41 L~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK  120 (337)
                      +....|+|+.++|.||++|++.++++||...|+.|..+...+.++|++|+|+|||+|++||....  ...+..+++..||
T Consensus        10 ~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~--~~~i~p~e~v~IR   87 (947)
T COG5657          10 LDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN--GNSILPDENVLIR   87 (947)
T ss_pred             HHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc--ccCCCCccchHHH
Confidence            34567889999999999999999999999999999999889999999999999999999998422  3466677777999


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q psy9795         121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEI  200 (337)
Q Consensus       121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el  200 (337)
                      ..++..+.++++.+..|.++|++.||+.|||++||+|++.+.+.++++|.+..++.|.++++|+|++|-.+|+++++-++
T Consensus        88 ~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei  167 (947)
T COG5657          88 DELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEI  167 (947)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhccCCCCC
Q psy9795         201 KFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCL  280 (337)
Q Consensus       201 ~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~~~p~l  280 (337)
                      .+.+..+..++...+...-....   +.++..-..++.....||.||...+++.|++||++++.||+.|+.+++.-.|-+
T Consensus       168 ~p~L~~~l~pfl~~~~~~~s~~~---~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~~l  244 (947)
T COG5657         168 APVLLSILCPFLFSSAYFWSMSE---NLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNPVL  244 (947)
T ss_pred             HHHHHHHHHHHHHhccchhHHhh---cchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcchhh
Confidence            99999888877655554444332   133333446677788899999999999999999999999999999999877766


Q ss_pred             CccchhhhhhhhccchhHHHhhhHHHHHHHH-HHhhhh
Q psy9795         281 RTDSIFVNSFRRFISDVETRRRAACDFVKIL-CKYMED  317 (337)
Q Consensus       281 ~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~-~k~~~~  317 (337)
                      +. +++.     . ...--.|.++|+.++.| +||.+.
T Consensus       245 q~-~~le-----~-~~~~~l~~~i~e~f~ly~t~yp~~  275 (947)
T COG5657         245 QK-DCLE-----D-CVYFKLKGSICEIFNLYTTKYPEV  275 (947)
T ss_pred             hh-hhcc-----c-ceeeeecccHHHHHHHHhhccHHH
Confidence            53 2221     0 11112444589999999 676643

>KOG2274|consensus

Probab=99.94  E-value=2.5e-26  Score=234.56  Aligned_cols=262  Identities=16%  Similarity=0.240  Sum_probs=205.2

Q ss_pred             HHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC---CCCC
Q psy9795          35 CSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE---PDKI  111 (337)
Q Consensus        35 ~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~---~~~i  111 (337)
                      +-+.++|.+.+|||+++|.+||.+|++++..+||..+|.+++.+...+.+.||+|.|+||++|.+||.+..+.   +...
T Consensus         4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~   83 (1005)
T KOG2274|consen    4 QAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIV   83 (1005)
T ss_pred             HHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcc
Confidence            3456788999999999999999999999999999999999999988899999999999999999999977552   2337


Q ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhh
Q psy9795         112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEF  191 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~  191 (337)
                      +++.|..||+.+++.+..++.+||+..+++++.||..|||+.||+|++.+..+++++|.+.+++++.||.++..+---  
T Consensus        84 ~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~--  161 (1005)
T KOG2274|consen   84 SEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV--  161 (1005)
T ss_pred             cHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH--
Confidence            899999999999999998889999999999999999999999999999999999999999999999999999986411  


Q ss_pred             hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhc-ccCCChhHHHHHHHHHHHHHHHhhhccccC----------ChHHHHH
Q psy9795         192 KSQKLWTEIKFVLDNFAKPFTELFKATINLVG-EHKDNPTALKVIYNSLVVSCKIFYSLNFQD----------LPEYFED  260 (337)
Q Consensus       192 ~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~-~~~~~~~~~~~~~e~l~lilKif~~~~~~~----------lp~~~e~  260 (337)
                        .+.    ..+..       ..++.++.+.. ....+.   ..+...  .-+|.|++|..+-          ...++..
T Consensus       162 --ee~----~~~~~-------~~l~~m~~~f~~~~~~s~---~~~~~a--a~~~lf~sc~~li~~~~e~~~~~~~~~~s~  223 (1005)
T KOG2274|consen  162 --EEM----FFVGP-------VSLAEMYRIFALTIVYSI---ITRLGA--ARGKLFTSCLTLITNVEEVWAEHVKVFLSQ  223 (1005)
T ss_pred             --HHH----hcccc-------cchhhhhhhhhhccccch---hHHHHh--hhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence              111    11111       12223222211 011111   111111  1167777775431          1245577


Q ss_pred             hHHHHHHHHHHhhccCCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHHHHhhhhhhhhcccccccc
Q psy9795         261 NMVVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKD  329 (337)
Q Consensus       261 ~l~~W~~~f~~iL~~~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~~~~~  329 (337)
                      .+..||+.|-..++.+.+            +.++.++++.|. +..++++|.++....|+.....-|--
T Consensus       224 ~l~~~~~~l~h~l~~~~g------------~~~~~~~eilk~-~t~l~~nfp~~~~~~~~~~~~~vw~~  279 (1005)
T KOG2274|consen  224 ILNQFMDILEHPLQRNDG------------SDFSLRMEILKC-LTQLVENFPSLINPFMMGMFSIVWQT  279 (1005)
T ss_pred             HHHHHHHHHhhhhccccc------------chHHHHHHHHHH-HHHHHHhhHHhhhHHHHhhhhHHHHH
Confidence            899999998888877543            456778999999 89999999999999999888777643

>KOG1993|consensus

Probab=99.92  E-value=1.2e-23  Score=212.68  Aligned_cols=231  Identities=16%  Similarity=0.244  Sum_probs=176.2

Q ss_pred             HhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH
Q psy9795          38 QGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE  117 (337)
Q Consensus        38 ~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~  117 (337)
                      ..+|.+..|||..++|.||++|++.+++|||...|..|..+.+.+..+|.+|+|||||-|.++|++..  ...+|+|+|.
T Consensus         3 vq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~--~~sl~~EEK~   80 (978)
T KOG1993|consen    3 VQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNT--KMSLPPEEKD   80 (978)
T ss_pred             HHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCC--cccCCHHHHH
Confidence            45788888999999999999999999999999999999999889999999999999999999998543  3589999999


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhhhhhhhh
Q psy9795         118 AIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG----DFHIINGVLHTAHSLFKRYRHEFKS  193 (337)
Q Consensus       118 ~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~----d~~~~~~aL~~L~~i~k~yr~~~~s  193 (337)
                      .||.+++..+..+.+++..|.|.+++.||+-|||.+||+|++.|.+.+++.    |....+..|.+|+.++|....+   
T Consensus        81 ~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~---  157 (978)
T KOG1993|consen   81 FIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK---  157 (978)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh---
Confidence            999999999998889999999999999999999999999999999999875    9999999999999999987432   


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHH-HHHHH-----Hhc-ccCCChhHHHHHHHHHHHHHHHhhhcccc--CChH--HHHHhH
Q psy9795         194 QKLWTEIKFVLDNFAKPFTELF-KATIN-----LVG-EHKDNPTALKVIYNSLVVSCKIFYSLNFQ--DLPE--YFEDNM  262 (337)
Q Consensus       194 ~~l~~el~~il~~~~~~L~~lf-~~l~~-----~~~-~~~~~~~~~~~~~e~l~lilKif~~~~~~--~lp~--~~e~~l  262 (337)
                       .+.++. +......+....++ +.+.+     .++ ...++++..-..++.-++.+|.++.++..  +=|.  .+.+.+
T Consensus       158 -RL~a~r-k~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl  235 (978)
T KOG1993|consen  158 -RLLADR-KAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERL  235 (978)
T ss_pred             -HHhhhh-HHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHH
Confidence             332221 22233333222211 11111     111 11223333334667778899999877643  2232  255677


Q ss_pred             HHHHHHHHHhhcc
Q psy9795         263 VVWMPALHNLLVT  275 (337)
Q Consensus       263 ~~W~~~f~~iL~~  275 (337)
                      ..+++...+.+..
T Consensus       236 ~~F~e~~~~~~~~  248 (978)
T KOG1993|consen  236 LQFLELHQRKLLS  248 (978)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777775544443

>KOG2171|consensus

Probab=99.85  E-value=4.8e-20  Score=193.49  Aligned_cols=146  Identities=19%  Similarity=0.358  Sum_probs=130.4

Q ss_pred             hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCC
Q psy9795          30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD  109 (337)
Q Consensus        30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~  109 (337)
                      +..|.+++++.    .|||+++|++||+.|+.....+.....|.+++.+. .++.+||+|||.+|+.+.++|+       
T Consensus         3 ~~~l~qLl~~l----~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~-~~p~~Rq~aaVl~Rkl~~~~w~-------   70 (1075)
T KOG2171|consen    3 SAPLEQLLQQL----LSPDNEVRRQAEEALETLAKTEPLLPALAHILATS-ADPQVRQLAAVLLRKLLTKHWS-------   70 (1075)
T ss_pred             hhHHHHHHHHh----cCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHhh-------
Confidence            34555665544    46777999999999998777766777788887764 5899999999999999999998       


Q ss_pred             CCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         110 KIHASDREAIKGLILHLMLTSP-EAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       110 ~i~~e~K~~IK~~Ll~~L~~~~-~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .++++.|+.||+.|+.++.+.+ +.||+++|++|+.||+.+.|++||+|++.|.++.+|+|+..++.|+.+|..+.+.+
T Consensus        71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~  149 (1075)
T KOG2171|consen   71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETF  149 (1075)
T ss_pred             cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhh
Confidence            8999999999999999999964 78999999999999999999999999999999999999999999999999999876

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.80  E-value=3.3e-19  Score=173.70  Aligned_cols=140  Identities=41%  Similarity=0.663  Sum_probs=108.5

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhH
Q psy9795         183 LFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNM  262 (337)
Q Consensus       183 i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l  262 (337)
                      |+|+||+.++|++++.|++.+++.+.+||+.+|..+.+++.++..+++..+..++++++|+||||+++++|+|++|||++
T Consensus         1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fed~l   80 (370)
T PF08506_consen    1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFEDNL   80 (370)
T ss_dssp             HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTH
T ss_pred             CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHH
Confidence            68999999999999999999999999999999999999987777778888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHH-HHhhhhh---hhhccccccc
Q psy9795         263 VVWMPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKIL-CKYMEDK---MMGTSTAGAK  328 (337)
Q Consensus       263 ~~W~~~f~~iL~~~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~-~k~~~~~---~~~~~~~~~~  328 (337)
                      ..||+.|+.+|+++.|.+..|+.      +-.+..+..|+.+|+.+++| .||-|..   ++.....-|.
T Consensus        81 ~~wm~~f~~~L~~~~p~l~~~d~------~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~  144 (370)
T PF08506_consen   81 SEWMEIFHKYLTYPNPALEEDDD------DEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWN  144 (370)
T ss_dssp             HHHHHHHHHHHH--SGGG-TT-S------SS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccCCCCc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998774332      22445677777799999999 6676553   3444444443

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2023|consensus

Probab=99.77  E-value=2.5e-18  Score=171.75  Aligned_cols=169  Identities=15%  Similarity=0.260  Sum_probs=147.1

Q ss_pred             HHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhC-CCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795          34 FCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERA-DVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH  112 (337)
Q Consensus        34 ~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~-~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~  112 (337)
                      .+.+.++|.++.|||+++|+.+...|+++...|+|..||..|+.+. +.+..+|.+|+..|||.|+.+|.       .++
T Consensus        12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~-------~~~   84 (885)
T KOG2023|consen   12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN-------SIP   84 (885)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccccc-------CCC
Confidence            3444557889999999999999999999999999999999997653 35789999999999999999997       788


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhh
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFK  192 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~  192 (337)
                      .+.+.+||+.++..+..+++.||...+.+|.+|+...+-..||+++|.|++++.++|.+..+||+.+|.+||++-.-.+.
T Consensus        85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld  164 (885)
T KOG2023|consen   85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD  164 (885)
T ss_pred             hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999644444


Q ss_pred             hhhhHHHHHHHHHHhhH
Q psy9795         193 SQKLWTEIKFVLDNFAK  209 (337)
Q Consensus       193 s~~l~~el~~il~~~~~  209 (337)
                      ++-..++++.++..|..
T Consensus       165 s~~~~rpl~~mipkfl~  181 (885)
T KOG2023|consen  165 SDVLTRPLNIMIPKFLQ  181 (885)
T ss_pred             hhcccCchHHhHHHHHH
Confidence            44444455555555543

>KOG1241|consensus

Probab=99.65  E-value=1.2e-15  Score=154.64  Aligned_cols=150  Identities=18%  Similarity=0.271  Sum_probs=130.8

Q ss_pred             cccCCCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC----CCCCCCHH
Q psy9795          41 PNHDKNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED----EPDKIHAS  114 (337)
Q Consensus        41 L~~~~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~----~~~~i~~e  114 (337)
                      |..++|||+++|++||.+|+++..+  |+|+..|.+++.+.+.+...|++|++.|||.+..+=.....    +|..++.|
T Consensus         7 le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e   86 (859)
T KOG1241|consen    7 LEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAE   86 (859)
T ss_pred             HHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHH
Confidence            3448899999999999999998875  79999999999999889999999999999999753221110    24589999


Q ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHhhhhhh
Q psy9795         115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFH-IINGVLHTAHSLFKRYRHE  190 (337)
Q Consensus       115 ~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~-~~~~aL~~L~~i~k~yr~~  190 (337)
                      .|++||++++.+|.++.+...+..+.+++.||..+.| +.||+|+..++.....+.+. ...++|.+++.+|++...+
T Consensus        87 ~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe  164 (859)
T KOG1241|consen   87 IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE  164 (859)
T ss_pred             HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH
Confidence            9999999999999998889999999999999999999 79999999999999876544 6789999999999997654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.52  E-value=2e-12  Score=128.13  Aligned_cols=156  Identities=18%  Similarity=0.278  Sum_probs=132.8

Q ss_pred             hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCC--ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC-
Q psy9795          30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED-  106 (337)
Q Consensus        30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~p--gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~-  106 (337)
                      .++|.|+.+   ++-+|||+++|..||.+|+++....  .|...|.+++.+.+...++|.+|++.|||.+..+-..... 
T Consensus         3 ~~ef~~l~~---n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~   79 (858)
T COG5215           3 KSEFRCLGK---NHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG   79 (858)
T ss_pred             hHHHHHHHh---cccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence            468888883   4569999999999999999998753  6899999999988888999999999999999754321111 


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy9795         107 ---EPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDF-HIINGVLHTAH  181 (337)
Q Consensus       107 ---~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~-~~~~~aL~~L~  181 (337)
                         .|..++.|.|++||...+.+|.++.+.+.+..+..++.||+.+.| ..||+|+..++.....+.+ ..+..+|.+++
T Consensus        80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g  159 (858)
T COG5215          80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG  159 (858)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence               245799999999999999999999999999999999999999999 7999999999999887644 45678899999


Q ss_pred             HHHhhhh
Q psy9795         182 SLFKRYR  188 (337)
Q Consensus       182 ~i~k~yr  188 (337)
                      .+|++-.
T Consensus       160 y~ces~~  166 (858)
T COG5215         160 YHCESEA  166 (858)
T ss_pred             HHhhccC
Confidence            9998743

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope

Probab=99.49  E-value=8.6e-14  Score=105.38  Aligned_cols=75  Identities=23%  Similarity=0.435  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhC-CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC-CCCCCCHHHHHHHHHHHHHHHcc
Q psy9795          55 TENFLESVETN-QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED-EPDKIHASDREAIKGLILHLMLT  129 (337)
Q Consensus        55 AE~~L~~~~~~-pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~-~~~~i~~e~K~~IK~~Ll~~L~~  129 (337)
                      ||++|++++.+ |||+.+|++|+.+.+.+.++|++|+++|||.|+++|..... .+..+++++|+.||+.|+++|.+
T Consensus         1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~   77 (77)
T PF03810_consen    1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ   77 (77)
T ss_dssp             HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence            89999999999 99999999999888889999999999999999999983221 13479999999999999999864

Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=99.31  E-value=3.4e-10  Score=113.61  Aligned_cols=194  Identities=11%  Similarity=0.229  Sum_probs=140.3

Q ss_pred             CChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHH
Q psy9795          47 IQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHL  126 (337)
Q Consensus        47 pD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~  126 (337)
                      +|....+||++-|.+++..|+.|.---+|+.++. .++.+..|.-.|...|+++|+       .+|++.|..||+.+++.
T Consensus        26 g~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-~pqskyiALs~LdklIttkWk-------llp~~~r~GiRnyvv~~   97 (1053)
T COG5101          26 GDGRKQEQAQRILTKFQELPDAWTKADYILNNSK-LPQSKYIALSLLDKLITTKWK-------LLPEGMRQGIRNYVVQL   97 (1053)
T ss_pred             CCchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-CcchhhhHHHHHHHHHHhhhh-------hCCcHHHHHHHHHHHHH
Confidence            4558899999999999999999999999998865 578889999999999999998       89999999999999999


Q ss_pred             HccC--CHH-------HHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHH---HHHHHHHHhhhhhhhhhh
Q psy9795         127 MLTS--PEA-------IQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGV---LHTAHSLFKRYRHEFKSQ  194 (337)
Q Consensus       127 L~~~--~~~-------Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~a---L~~L~~i~k~yr~~~~s~  194 (337)
                      +++.  +..       +-..+-.++..|++.|||.+||+++|++++..++ +.+..++.   |..|++-+-+|.    .+
T Consensus        98 vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~-s~~vCeNnmivLklLsEEvFdfS----ae  172 (1053)
T COG5101          98 VIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI-SMEVCENNMIVLKLLSEEVFDFS----AE  172 (1053)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc-hHHHHhccHHHHHHhHHHHHhcc----HH
Confidence            9873  333       4456778899999999999999999999998764 33344444   444555444442    22


Q ss_pred             hhHHHH-HHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHH
Q psy9795         195 KLWTEI-KFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFED  260 (337)
Q Consensus       195 ~l~~el-~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~  260 (337)
                      .+.+-. ..+-.++.--+.++|.-+.+++... .+++.+..+++.+      .+++.|..+--.|+.
T Consensus       173 qmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~-~~~SLi~ATLesl------lrfl~wiPl~yIfeT  232 (1053)
T COG5101         173 QMTQVKKRLLKNQMKIEFPQIFGLCKQILEYS-RDESLIEATLESL------LRFLEWIPLDYIFET  232 (1053)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CChHHHHHHHHHH------HHHHhhCchhHHHHH
Confidence            222211 2344556666678888888887543 3566555555542      344555555444543

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.07  E-value=3.9e-09  Score=88.95  Aligned_cols=134  Identities=18%  Similarity=0.227  Sum_probs=87.1

Q ss_pred             CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh-hh--hhhhhhHHHHHHHHHHh
Q psy9795         131 PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR-HE--FKSQKLWTEIKFVLDNF  207 (337)
Q Consensus       131 ~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr-~~--~~s~~l~~el~~il~~~  207 (337)
                      |+.|++++|.+++.|+.+|||++||++++.+++.+++ +......+|.+|..+.+++. +.  ..+.+-+++++..+...
T Consensus         1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~   79 (148)
T PF08389_consen    1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN   79 (148)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999987 47778888999988888875 21  11223344555555555


Q ss_pred             hHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhcc
Q psy9795         208 AKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVT  275 (337)
Q Consensus       208 ~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~  275 (337)
                      .+   .++..+.+.+.......     ..++...++|++.+.+..--++.+.+  .++++....++..
T Consensus        80 ~~---~i~~~l~~~l~~~~~~~-----~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~  137 (148)
T PF08389_consen   80 SP---DILEILSQILSQSSSEA-----NEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQS  137 (148)
T ss_dssp             HH---HHHHHHHHHHHHHCHCC-----HHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTS
T ss_pred             HH---HHHHHHHHHHHhhcccc-----HHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCC
Confidence            44   44444444443222111     13456888999988776322333322  2255555666633

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG2020|consensus

Probab=98.86  E-value=5.1e-08  Score=105.01  Aligned_cols=163  Identities=18%  Similarity=0.338  Sum_probs=121.2

Q ss_pred             ChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHH
Q psy9795          48 QLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLM  127 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L  127 (337)
                      +.+.|.+|.+.+.+++..|..+.-...|+..++ ...+|.+|.-+|-|.|+.+|+       .+|.++|..+|+.+++.+
T Consensus        25 s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~-~~~~k~f~Lqlle~vik~~W~-------~~~~~~r~glk~~v~~~~   96 (1041)
T KOG2020|consen   25 SNEERGEAQQILEELKEEPDSWLQVYLILKLST-NPILKYFALQLLENVIKFRWN-------SLPVEERVGLKNYVLTLI   96 (1041)
T ss_pred             chHHHHHHHHHHHHHHhCcchHHHHHHHHhccC-CchhheeeHHHHHHHHHHhcc-------cCCccccHHHHHHHHHHH
Confidence            568999999999999999998888888877753 678999999999999999998       789999999999999998


Q ss_pred             ccC---------CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q psy9795         128 LTS---------PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWT  198 (337)
Q Consensus       128 ~~~---------~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~  198 (337)
                      ...         .+.++.+++..+..|++.|||+.||++++++.+....+. ...+.++.++.-+.+++ +.+.+.++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~-~~~el~m~Il~lLsEdv-f~~ss~~~~q  174 (1041)
T KOG2020|consen   97 IEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSE-TVCELSMIILLLLSEEV-FDFSSSELTQ  174 (1041)
T ss_pred             hhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCc-ccchHHHHHHHHHHHHH-hcccchHHHh
Confidence            762         135789999999999999999999999999999987542 22344445555555543 1123444333


Q ss_pred             HHHHHHHHhhH-HHHHHHHHHHH
Q psy9795         199 EIKFVLDNFAK-PFTELFKATIN  220 (337)
Q Consensus       199 el~~il~~~~~-~L~~lf~~l~~  220 (337)
                      ....+++.... .+..+|.-+..
T Consensus       175 ~~~~il~~~~~~~f~~i~~l~~~  197 (1041)
T KOG2020|consen  175 QKIIILKNLLENEFQQIFTLCSY  197 (1041)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHH
Confidence            33344444433 33344444444

>KOG2021|consensus

Probab=98.24  E-value=0.00018  Score=74.45  Aligned_cols=116  Identities=10%  Similarity=0.279  Sum_probs=100.9

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      +.|+..|+||-+.+++++..|..+..+.+++....-+..+|..+.-.|-..++..++       ..+..+.+.||..+..
T Consensus        16 ~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyn-------e~nl~elqlvR~sv~s   88 (980)
T KOG2021|consen   16 RVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYN-------EANLNELQLVRFSVTS   88 (980)
T ss_pred             cccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhc-------cCCHHHHHHHHHHHHH
Confidence            569999999999999999999999999999887767889999999999888866443       4677888999998876


Q ss_pred             HHc-----cC----CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC
Q psy9795         126 LML-----TS----PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG  168 (337)
Q Consensus       126 ~L~-----~~----~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~  168 (337)
                      -+.     ..    +..|+++++.+++.+.-.+||..|++++..+...++-+
T Consensus        89 wlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~  140 (980)
T KOG2021|consen   89 WLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVD  140 (980)
T ss_pred             HHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence            553     23    56899999999999999999999999999999998765

>KOG1410|consensus

Probab=98.05  E-value=0.00063  Score=69.90  Aligned_cols=133  Identities=15%  Similarity=0.164  Sum_probs=112.0

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      |.|+..|-+||..|.++...|+++.-+--++...+ .+....+|+..|-+.|.++        .++|-+.|-.||+.+++
T Consensus        17 s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs-~pYs~mlAst~L~Klvs~~--------t~lpl~qrldir~Yiln   87 (1082)
T KOG1410|consen   17 STDPTARHRAEKALAELSESPECLSKCQLLLERGS-YPYSQMLASTCLMKLVSRK--------TPLPLEQRLDIRNYILN   87 (1082)
T ss_pred             cCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHcCC--------CCCcHHHHHHHHHHHHH
Confidence            56889999999999999999999988877777654 4566677777776677654        26999999999999999


Q ss_pred             HHcc-CC---HHHHHHHHHHHHHHHhhhCCC------CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         126 LMLT-SP---EAIQKQLSDATAIIGKSDFPD------KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       126 ~L~~-~~---~~Ir~ql~~~i~~Ia~~DfP~------~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .+.+ .|   +.+-..++..++.|-+..|-+      .+-+.+..+...++.++.++-..|+.+|.+++.+.
T Consensus        88 ylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqem  159 (1082)
T KOG1410|consen   88 YLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEM  159 (1082)
T ss_pred             HHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Confidence            9998 44   468889999999999987762      34588999999999999999999999999999886

>KOG2022|consensus

Probab=97.71  E-value=0.00077  Score=71.00  Aligned_cols=113  Identities=17%  Similarity=0.317  Sum_probs=97.6

Q ss_pred             ChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHH
Q psy9795          48 QLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLM  127 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L  127 (337)
                      +.+....+++.|.+++..|.-+..-.++++... ...+|.++|+.|--.|.+||.       .+++++.+.+|.+++..+
T Consensus        21 ~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k-~~evqyFGAltL~~ki~~~~e-------~~~~~~~~qL~~klf~~l   92 (982)
T KOG2022|consen   21 NHENDAITQKWLQDAQCSQQGWHFSWQLLQPDK-SSEVQYFGALTLHDKINTRWE-------ECPANEAVQLKLKLFLIL   92 (982)
T ss_pred             ChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCc-hhHHHHHhHHHHHHHHHhhhc-------cCChhHHHHHHHHHHHHH
Confidence            667788899999999999988888778877654 467799999999999999997       788999999999999999


Q ss_pred             ccC---CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC
Q psy9795         128 LTS---PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG  168 (337)
Q Consensus       128 ~~~---~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~  168 (337)
                      ...   ++.|-++++.+++..+-+--|+.||+-+.+++..++.+
T Consensus        93 ~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q  136 (982)
T KOG2022|consen   93 SRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQ  136 (982)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcc
Confidence            763   46788888888888888888999999999999999864

>KOG2081|consensus

Probab=97.30  E-value=0.016  Score=58.65  Aligned_cols=125  Identities=14%  Similarity=0.270  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHcc---
Q psy9795          53 SPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLT---  129 (337)
Q Consensus        53 k~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~---  129 (337)
                      ..|-+.|.++++.+.-+..+-+++... .+...-.+|+-.+||.|+....       .+|+..-...|+.++..+..   
T Consensus         2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~-------~Lp~~~~~slrdsl~thl~~l~~   73 (559)
T KOG2081|consen    2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFS-------ELPPLTHASLRDSLITHLKELHD   73 (559)
T ss_pred             chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHH-------hcCcchhHHHHHHHHHHHHHHHh
Confidence            468889999999999999998888775 6889999999999999999876       56565556667755555443   


Q ss_pred             CCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHhhh
Q psy9795         130 SPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFH--IINGVLHTAHSLFKRY  187 (337)
Q Consensus       130 ~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~--~~~~aL~~L~~i~k~y  187 (337)
                      .++.+++|++-+++.+|-+- | .|.+-++++++..++....  .....|.++-+-++++
T Consensus        74 ~~~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~  131 (559)
T KOG2081|consen   74 HPDVIRTQLAVAVAALALHM-P-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDI  131 (559)
T ss_pred             CCchHHHHHHHHHHHHHHHh-H-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcch
Confidence            34499999999999999874 4 7998888888888776544  2333344444444444

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=95.04  E-value=3.6  Score=42.14  Aligned_cols=142  Identities=13%  Similarity=0.141  Sum_probs=98.2

Q ss_pred             hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccC
Q psy9795          32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNW  101 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W  101 (337)
                      ++...++..|.   +|++.+|.-|=.+|..+-.          .++....++..+.++  +..+...|+-.|++..+.. 
T Consensus        77 ~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~-  150 (503)
T PF10508_consen   77 QYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAAIKALKKLASHP-  150 (503)
T ss_pred             HHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCc-
Confidence            34445544454   5778999998777766422          356667777777653  7899999999999998642 


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh--CCCC-C-hHHHHHHHHhhCCCCHHHHHHHH
Q psy9795         102 PLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD--FPDK-W-PSLITDMVAKFGTGDFHIINGVL  177 (337)
Q Consensus       102 ~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D--fP~~-W-PeLl~~L~~~l~s~d~~~~~~aL  177 (337)
                      ...+   ..++.+    +...|-..+.+++..+|-.+.+++..|+++.  --+. | .++++.++..+.++|.-...+++
T Consensus       151 ~~~~---~l~~~~----~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnal  223 (503)
T PF10508_consen  151 EGLE---QLFDSN----LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNAL  223 (503)
T ss_pred             hhHH---HHhCcc----hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHH
Confidence            1000   011211    1555666666667789999999999998653  1112 2 25999999999999988899999


Q ss_pred             HHHHHHHhh
Q psy9795         178 HTAHSLFKR  186 (337)
Q Consensus       178 ~~L~~i~k~  186 (337)
                      .+|.++.+.
T Consensus       224 ell~~La~~  232 (503)
T PF10508_consen  224 ELLSELAET  232 (503)
T ss_pred             HHHHHHHcC
Confidence            999999994

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1992|consensus

Probab=94.75  E-value=4.5  Score=43.35  Aligned_cols=33  Identities=48%  Similarity=0.654  Sum_probs=28.3

Q ss_pred             ccchhHHHhhhHHHHHHHHHHhhhhhhhhcccc
Q psy9795         293 FISDVETRRRAACDFVKILCKYMEDKMMGTSTA  325 (337)
Q Consensus       293 ~~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~~~  325 (337)
                      -|+..+|.|+..|++++-.||.+|.++-++.+.
T Consensus       371 EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~  403 (960)
T KOG1992|consen  371 EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS  403 (960)
T ss_pred             ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            499999999999999999999888887666544

>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins

Probab=94.48  E-value=3.1  Score=36.46  Aligned_cols=137  Identities=10%  Similarity=0.069  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhh--CC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhh
Q psy9795         118 AIKGLILHLMLTS--PEAIQKQLSDATAIIGKSD--FP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFK  192 (337)
Q Consensus       118 ~IK~~Ll~~L~~~--~~~Ir~ql~~~i~~Ia~~D--fP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~  192 (337)
                      .||..++.+|...  ....-+.++.+++.+|..-  ++ +.|+||.+.+.... .+++   ..|+.++..+.-.+ |   
T Consensus         3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l-~---   74 (174)
T PF04510_consen    3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPL-Y---   74 (174)
T ss_pred             chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchh-h---
Confidence            4788899999874  3456778888888888654  36 79999999988865 3343   44555555544222 2   


Q ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCCh-HHHHHhHHHHHHHHHH
Q psy9795         193 SQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLP-EYFEDNMVVWMPALHN  271 (337)
Q Consensus       193 s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp-~~~e~~l~~W~~~f~~  271 (337)
                        +         +-+.|.+..+++...+.+..+...+  .....=.+...++.+-.+.....+ +.+++.+..-+.....
T Consensus        75 --~---------efl~~~~~~L~~~~~~~L~~p~~~d--~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~e  141 (174)
T PF04510_consen   75 --G---------EFLIPFMENLLPEISKVLLPPEEVD--VEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKE  141 (174)
T ss_pred             --h---------hHHHHHHHHHHHHHHHHcCCchhcc--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence              1         1222333355566666554332211  111222233445555555555555 5556777776666666


Q ss_pred             hhcc
Q psy9795         272 LLVT  275 (337)
Q Consensus       272 iL~~  275 (337)
                      ++++
T Consensus       142 lV~~  145 (174)
T PF04510_consen  142 LVER  145 (174)
T ss_pred             HHHc
Confidence            6666

Many of these members contain a repeated region.

>PTZ00429 beta-adaptin; Provisional

Probab=93.66  E-value=12  Score=40.30  Aligned_cols=138  Identities=7%  Similarity=-0.030  Sum_probs=82.8

Q ss_pred             CCChhhhHHHHHHHHHHHhC-CChHHHH---HHHHHhCCCChHHHHHHHHHHhccccccCcc----------c--CCC--
Q psy9795          46 NIQLESRSPTENFLESVETN-QNYPLLI---LTLVERADVDMTIRIAGAVAFKNYVKRNWPL----------V--EDE--  107 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~-pgf~~~L---l~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~----------~--~~~--  107 (337)
                      |.|...|+.|=+.+-.+... -+.....   +..+.+  .+..+|.+.-+|+.|+-+.+=..          +  +..  
T Consensus        43 s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S--~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~  120 (746)
T PTZ00429         43 GTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS--TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPV  120 (746)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHH
Confidence            33445666665555433221 1222222   233333  36788888888888776533210          0  000  


Q ss_pred             ---------CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh--HHHHHHHHhhCCCCHHHHHHH
Q psy9795         108 ---------PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP--SLITDMVAKFGTGDFHIINGV  176 (337)
Q Consensus       108 ---------~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP--eLl~~L~~~l~s~d~~~~~~a  176 (337)
                               ..--.++--+.+-..+..++.+.++.||+..+.|+..|.+.+ |+.-+  ++++.|..++..+|+..+.+|
T Consensus       121 IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nA  199 (746)
T PTZ00429        121 VRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNA  199 (746)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHH
Confidence                     001112222344444556666677899999999999998764 54332  456778888888899999999


Q ss_pred             HHHHHHHHhh
Q psy9795         177 LHTAHSLFKR  186 (337)
Q Consensus       177 L~~L~~i~k~  186 (337)
                      +.+|.+|.+.
T Consensus       200 l~aL~eI~~~  209 (746)
T PTZ00429        200 AAIVCEVNDY  209 (746)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.73  E-value=1.4  Score=34.89  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhH
Q psy9795         152 DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTA  231 (337)
Q Consensus       152 ~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~  231 (337)
                      +.-+++++-++.+++.+|...++.|..+|+.++|..+-            .++.    -+.++|..+..+..-   .++.
T Consensus        23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~------------~~l~----~f~~IF~~L~kl~~D---~d~~   83 (97)
T PF12755_consen   23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG------------EILP----YFNEIFDALCKLSAD---PDEN   83 (97)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH------------HHHH----HHHHHHHHHHHHHcC---Cchh
Confidence            44678899999999999999999999999999997632            1223    333677777776531   2233


Q ss_pred             HHHHHHHHHHHHH
Q psy9795         232 LKVIYNSLVVSCK  244 (337)
Q Consensus       232 ~~~~~e~l~lilK  244 (337)
                      .+...+.|-..+|
T Consensus        84 Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   84 VRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHHHhc
Confidence            4445555555444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=92.55  E-value=0.41  Score=37.67  Aligned_cols=106  Identities=12%  Similarity=0.079  Sum_probs=75.4

Q ss_pred             CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH----HHHHHHHHHHccCCHHHHHHHHHH
Q psy9795          66 QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE----AIKGLILHLMLTSPEAIQKQLSDA  141 (337)
Q Consensus        66 pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~----~IK~~Ll~~L~~~~~~Ir~ql~~~  141 (337)
                      .|....|++.+.+.  +..+|..|...+.|.....           ++..+.    .+-..+++.|.+.+..++...+.+
T Consensus         6 ~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~-----------~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~   72 (120)
T cd00020           6 AGGLPALVSLLSSS--DENVQREAAWALSNLSAGN-----------NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWA   72 (120)
T ss_pred             cCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHH
Confidence            46778888888765  4789999999999986542           111222    223355666666678999999999


Q ss_pred             HHHHHhhhCCC---CCh-HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795         142 TAIIGKSDFPD---KWP-SLITDMVAKFGTGDFHIINGVLHTAHSLF  184 (337)
Q Consensus       142 i~~Ia~~DfP~---~WP-eLl~~L~~~l~s~d~~~~~~aL~~L~~i~  184 (337)
                      +..|+...-+.   -+. ++++.+.+.++..+......++.+|..++
T Consensus        73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            99998754221   232 47888888888888888888888888776

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2171|consensus

Probab=92.22  E-value=22  Score=39.49  Aligned_cols=147  Identities=14%  Similarity=0.148  Sum_probs=96.4

Q ss_pred             hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCCh--------HHHHHHHHHhCCCChHHHHHHHHHHhccccccC
Q psy9795          32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNY--------PLLILTLVERADVDMTIRIAGAVAFKNYVKRNW  101 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf--------~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W  101 (337)
                      .+-.++..+++.-.+|++-+|-+|=..+-|+..  +|++        ...|+.++.+.+ ...|...|+..+=|+....=
T Consensus       386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~  464 (1075)
T KOG2171|consen  386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECD  464 (1075)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCc
Confidence            355578888899999999999999999988876  3433        234555555543 45666777788777765432


Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHh---hhCCCCChHHHHHHHHhhCCCCH-H---HH
Q psy9795         102 PLVEDEPDKIHASDREAIKGLILHLML-TSPEAIQKQLSDATAIIGK---SDFPDKWPSLITDMVAKFGTGDF-H---II  173 (337)
Q Consensus       102 ~~~~~~~~~i~~e~K~~IK~~Ll~~L~-~~~~~Ir~ql~~~i~~Ia~---~DfP~~WPeLl~~L~~~l~s~d~-~---~~  173 (337)
                      ++.  -.+.+     ..+=+..+..|. +.++.++.+...+|+.+|.   ..|-..++.++|.|.+.+++.+. +   ..
T Consensus       465 ~~~--l~pYL-----d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lr  537 (1075)
T KOG2171|consen  465 KSI--LEPYL-----DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELR  537 (1075)
T ss_pred             HHH--HHHHH-----HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHH
Confidence            210  00122     223332344444 4568899999999999974   56667889999999999998642 1   12


Q ss_pred             HHHHHHHHHHHhh
Q psy9795         174 NGVLHTAHSLFKR  186 (337)
Q Consensus       174 ~~aL~~L~~i~k~  186 (337)
                      -..+.|++-+-..
T Consensus       538 gktmEcisli~~A  550 (1075)
T KOG2171|consen  538 GKTMECLSLIARA  550 (1075)
T ss_pred             hhHHHHHHHHHHH
Confidence            3345666665543

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.20  E-value=4.4  Score=40.95  Aligned_cols=149  Identities=11%  Similarity=0.095  Sum_probs=96.0

Q ss_pred             hhhccchhhHHHHHHhhcccC-CCCChhhhHHHHHHHHHHHhCCChHHH----HHHHHHhCCCChHHHHHHHHHHhcccc
Q psy9795          24 EDMCDRNGEFFCSTQGVPNHD-KNIQLESRSPTENFLESVETNQNYPLL----ILTLVERADVDMTIRIAGAVAFKNYVK   98 (337)
Q Consensus        24 ~~~~~~~~~~~~~l~~tL~~~-~spD~~~Rk~AE~~L~~~~~~pgf~~~----Ll~i~~~~~~~~~iRq~AaI~LKN~V~   98 (337)
                      .-+.+.+.+..-+..+++..+ .|||+..|.-|=..|-.+. .|+....    +.+++.++  ++.||..|++.+-+..+
T Consensus        67 ~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~  143 (526)
T PF01602_consen   67 SLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPLIPDVIKLLSDP--SPYVRKKAALALLKIYR  143 (526)
T ss_dssp             HHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHHHHHHHHHhcCC--chHHHHHHHHHHHHHhc
Confidence            344555556555666666655 5788899998888887765 3444444    44455543  67999999999998887


Q ss_pred             ccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH-Hhhh-CCCCChHHHHHHHHhhCCCCHHHHHHH
Q psy9795          99 RNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAII-GKSD-FPDKWPSLITDMVAKFGTGDFHIINGV  176 (337)
Q Consensus        99 ~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~I-a~~D-fP~~WPeLl~~L~~~l~s~d~~~~~~a  176 (337)
                      ....       .+ +..   +-+.+.+++.+.+..++.....++..| ...+ +-.-.+.++..+.+.+...++-.....
T Consensus       144 ~~p~-------~~-~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~i  212 (526)
T PF01602_consen  144 KDPD-------LV-EDE---LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKI  212 (526)
T ss_dssp             HCHC-------CH-HGG---HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             cCHH-------HH-HHH---HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHH
Confidence            7332       22 111   456677777777788888888888888 1111 012245666666666666777666777


Q ss_pred             HHHHHHHHhh
Q psy9795         177 LHTAHSLFKR  186 (337)
Q Consensus       177 L~~L~~i~k~  186 (337)
                      +.+|..+++.
T Consensus       213 l~~l~~~~~~  222 (526)
T PF01602_consen  213 LRLLRRYAPM  222 (526)
T ss_dssp             HHHHTTSTSS
T ss_pred             HHHHHhcccC
Confidence            7777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=92.03  E-value=17  Score=37.76  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=21.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCH
Q psy9795         121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDF  170 (337)
Q Consensus       121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~  170 (337)
                      +.++++.-+.+..||.+....|-.+++.. |+.=+-+.+.|+|+++++|+
T Consensus        62 ~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~tdd~  110 (556)
T PF05918_consen   62 NAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQTDDP  110 (556)
T ss_dssp             HHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---H
T ss_pred             HHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhcccH
Confidence            34444444445556666555555555543 33335555666666665544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=91.41  E-value=4  Score=36.62  Aligned_cols=137  Identities=11%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             hhHhhhccchhh-----HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHH-HHHHH--hCCCChHHHHHHHHH
Q psy9795          21 QCLEDMCDRNGE-----FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLI-LTLVE--RADVDMTIRIAGAVA   92 (337)
Q Consensus        21 ~~~~~~~~~~~~-----~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~L-l~i~~--~~~~~~~iRq~AaI~   92 (337)
                      +++.+++...+.     ...++..++.-..++...+|+.|.+-|..+-..-++...+ ..++.  ..+-+..+|..++.+
T Consensus        75 ~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~  154 (228)
T PF12348_consen   75 QLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEW  154 (228)
T ss_dssp             HHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            456666654442     2224444555556667789999999999987765532222 33332  223468999999999


Q ss_pred             HhccccccCcccCCCCCCCCHH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhC
Q psy9795          93 FKNYVKRNWPLVEDEPDKIHAS-DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFG  166 (337)
Q Consensus        93 LKN~V~~~W~~~~~~~~~i~~e-~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~  166 (337)
                      +...+.+.+...    ..+... .-..+...+..++.++++.||...-.++..+.++     ||+--..+++.+.
T Consensus       155 l~~~l~~~~~~~----~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~-----~~~~a~~~~~~l~  220 (228)
T PF12348_consen  155 LAIILEKWGSDS----SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH-----FPERAESILSMLD  220 (228)
T ss_dssp             HHHHHTT---------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH-----H-HHH--------
T ss_pred             HHHHHHHccchH----hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----CCHhhccchhcch
Confidence            999987755111    123221 2355677777788888888998888888888665     6766666665443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PRK09687 putative lyase; Provisional

Probab=90.76  E-value=3.4  Score=39.02  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=60.4

Q ss_pred             CCChhhhHHHHHHHHHHHhC----CChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc--CcccCCCCCCCCHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETN----QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN--WPLVEDEPDKIHASDREAI  119 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~----pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~--W~~~~~~~~~i~~e~K~~I  119 (337)
                      |+|+.+|..|=.-|-++...    +.....|..++.+ +.+..||..|+-.|=+.-...  |.              ...
T Consensus        65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~~~--------------~~a  129 (280)
T PRK09687         65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPLYS--------------PKI  129 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccccccccc--------------hHH
Confidence            44556666666555555432    1234444444333 234566655555554431110  10              112


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         120 KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       120 K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      .+.+...+.+.+..||...+.++..|..       ++-++.|+..++++|....+.+...|..+
T Consensus       130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        130 VEQSQITAFDKSTNVRFAVAFALSVIND-------EAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence            3334444555556677666666654321       45677777777777776677777777766

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=90.75  E-value=15  Score=34.79  Aligned_cols=155  Identities=10%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             HHHHHhhc-ccCCCCChhhhHHHHHHHHHHHh-----CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCccc-CC
Q psy9795          34 FCSTQGVP-NHDKNIQLESRSPTENFLESVET-----NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLV-ED  106 (337)
Q Consensus        34 ~~~l~~tL-~~~~spD~~~Rk~AE~~L~~~~~-----~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~-~~  106 (337)
                      ..++.+.. -+-.|+|+.+|+.|=+-|--+.-     ...+...+.+.+.+ + +..+|..|.=.+=..+..|=... +.
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccc
Confidence            34555544 45678899999999887765432     23466777777744 3 78888887644434443331110 00


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         107 EPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       107 ~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ....-.......+-+.+...+.+.++.++...++.++.+.-++--..||+++..|+-..=++.......--+||..++..
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~  182 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPV  182 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence            00001234456677788888888888899999999999998876555799999988776544322234566889999999


Q ss_pred             hhhh
Q psy9795         187 YRHE  190 (337)
Q Consensus       187 yr~~  190 (337)
                      |-+.
T Consensus       183 y~~s  186 (298)
T PF12719_consen  183 YASS  186 (298)
T ss_pred             HHcC
Confidence            8764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.69  E-value=19  Score=36.40  Aligned_cols=123  Identities=15%  Similarity=0.153  Sum_probs=90.3

Q ss_pred             CCChhhhHHHHHHHHHHHh-CCChHHHHHHHHHh--CCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVET-NQNYPLLILTLVER--ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGL  122 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~-~pgf~~~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~  122 (337)
                      |.|...|+-+--.+..+.. .|+.......-+.+  .+.++.+|-.|.-.+=|..              +++--+.+-..
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------------~~~~~~~l~~~  118 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--------------TPEMAEPLIPD  118 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---------------SHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--------------ccchhhHHHHH
Confidence            6677888888888887655 45533333333322  1235677877766665542              24445667777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChH-HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPS-LITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPe-Ll~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      +...+.+..+.||+..+.++..|.+. +|+.-+. +++.+.+++.+.|+..+.+|+.++.++
T Consensus       119 v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  119 VIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            78888888889999999999999988 4766665 799999999888999999999999999

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=90.66  E-value=5.6  Score=29.62  Aligned_cols=85  Identities=16%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh
Q psy9795          70 LLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD  149 (337)
Q Consensus        70 ~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D  149 (337)
                      ..|++.+.+ +.+..+|..|+-.|-+.    +.              ...-..|++.+.+.+..||.+.+.+++.|.   
T Consensus         2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~----~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---   59 (88)
T PF13646_consen    2 PALLQLLQN-DPDPQVRAEAARALGEL----GD--------------PEAIPALIELLKDEDPMVRRAAARALGRIG---   59 (88)
T ss_dssp             HHHHHHHHT-SSSHHHHHHHHHHHHCC----TH--------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---
T ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHc----CC--------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence            457777755 34789999888888622    21              245667777887777899999999999885   


Q ss_pred             CCCCChHHHHHHHHhhCCCC-HHHHHHHHHHH
Q psy9795         150 FPDKWPSLITDMVAKFGTGD-FHIINGVLHTA  180 (337)
Q Consensus       150 fP~~WPeLl~~L~~~l~s~d-~~~~~~aL~~L  180 (337)
                          .|+.++.|.+.+.+++ ......+..+|
T Consensus        60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 ----DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             ----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence                3678888888887764 33356666655

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=90.45  E-value=7.1  Score=34.03  Aligned_cols=93  Identities=11%  Similarity=0.015  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHH
Q psy9795          83 MTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMV  162 (337)
Q Consensus        83 ~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~  162 (337)
                      +.+|.-|.+.+=-...++=.       .+     +..-..+...|.+.++.||.+...+++.++..|+-.-.+.++..++
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~-------~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l   69 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN-------LV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL   69 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH-------HH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH
Confidence            46677777766655555311       11     2234467788888889999999999999999998665577779999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         163 AKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       163 ~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .++..+|+.....|-.++.++.++.
T Consensus        70 ~~l~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   70 KLLVDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence            9998889999999999999999874

>KOG2023|consensus

Probab=90.44  E-value=12  Score=39.46  Aligned_cols=178  Identities=8%  Similarity=0.173  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC---CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhh
Q psy9795         117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD---KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKS  193 (337)
Q Consensus       117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~---~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s  193 (337)
                      ..|++.+++++.++.+.||...-..+..+.+.-|+.   .-.++++.+.+.++..+.....+|.-.+++++-+.-     
T Consensus       661 snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g-----  735 (885)
T KOG2023|consen  661 SNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG-----  735 (885)
T ss_pred             ccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc-----
Confidence            448888888888888899999888999999887764   345788888877777777778899999999998752     


Q ss_pred             hhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHH----
Q psy9795         194 QKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPAL----  269 (337)
Q Consensus       194 ~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f----  269 (337)
                      .+..    +.+.       .+...+..+++.... +   +.++|-.-..+...-......+.++++..+.+||...    
T Consensus       736 ~~~~----~~v~-------~vl~~L~~iin~~~~-~---~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~  800 (885)
T KOG2023|consen  736 LKMK----QYVS-------PVLEDLITIINRQNT-P---KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNID  800 (885)
T ss_pred             hhhh----hHHH-------HHHHHHHHHhcccCc-h---HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccc
Confidence            2221    1122       222333344433222 2   1233322333333444444555566778888898743    


Q ss_pred             ------------HHhhccCCCCCCcc-chhhhhhhhccchhHHHhhhHHHHHHHHHHh
Q psy9795         270 ------------HNLLVTDVPCLRTD-SIFVNSFRRFISDVETRRRAACDFVKILCKY  314 (337)
Q Consensus       270 ------------~~iL~~~~p~l~~d-~~~~r~~~~~~~~~~~~k~~~~~~~~~~~k~  314 (337)
                                  +.+++......-.| .-.+--.-.|..+-+.++..++.+.+.|...
T Consensus       801 DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~q  858 (885)
T KOG2023|consen  801 DNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQ  858 (885)
T ss_pred             cchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Confidence                        33343332221111 0001112355556666776666666666443

>KOG1241|consensus

Probab=90.42  E-value=8.8  Score=40.89  Aligned_cols=208  Identities=12%  Similarity=0.106  Sum_probs=118.5

Q ss_pred             hhHhhhccchhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCChHHHHHHHHHhCCCChHHHHHHHHHHhcccc
Q psy9795          21 QCLEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVK   98 (337)
Q Consensus        21 ~~~~~~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~   98 (337)
                      |-.++=+++-.+|.-.+.+.|.++.+++ ..|..|--+||..-.  .|.--.-..+--.  +.+.++|.    +.|+++.
T Consensus        24 ~l~~~~~~nf~~F~~~Ls~vl~n~~~~~-~~R~~AGL~LKN~L~akd~~~k~~~~qRWl--~l~~e~re----qVK~~il   96 (859)
T KOG1241|consen   24 QLEQAQSQNFPQFLVLLSEVLANDNSSD-VARMAAGLQLKNSLTAKDPERKQQYQQRWL--QLPAEIRE----QVKNNIL   96 (859)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhccCCcH-HHHHHHhHHHhhhhccCCHHHHHHHHHHHH--cCCHHHHH----HHHHHHH
Confidence            3344445555689999999998888766 789999999986432  3433222222222  34556655    3555555


Q ss_pred             ccCcccCCC-------------CCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhhCCC----CChHHHHH
Q psy9795          99 RNWPLVEDE-------------PDKIHASDREAIKGLILHLMLTSP-EAIQKQLSDATAIIGKSDFPD----KWPSLITD  160 (337)
Q Consensus        99 ~~W~~~~~~-------------~~~i~~e~K~~IK~~Ll~~L~~~~-~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~  160 (337)
                      +--...+..             ...+|...=..+-..++.-..+.+ ..++..-.++|..|+.+--|+    .-.+.+..
T Consensus        97 ~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLta  176 (859)
T KOG1241|consen   97 RTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTA  176 (859)
T ss_pred             HHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHH
Confidence            544322211             012332222222223333333332 468999999999999876663    55667777


Q ss_pred             HHHhhCCC--CHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHH
Q psy9795         161 MVAKFGTG--DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNS  238 (337)
Q Consensus       161 L~~~l~s~--d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~  238 (337)
                      +++.....  +.+.+..|+.+|+.-.+=-+.-|.. |  .|.++|++.+.+.             ....+..-...+++|
T Consensus       177 Iv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~-E--~ern~iMqvvcEa-------------tq~~d~~i~~aa~~C  240 (859)
T KOG1241|consen  177 IVQGMRKEETSAAVRLAALNALYNSLEFTKANFNN-E--MERNYIMQVVCEA-------------TQSPDEEIQVAAFQC  240 (859)
T ss_pred             HHhhccccCCchhHHHHHHHHHHHHHHHHHHhhcc-H--hhhceeeeeeeec-------------ccCCcHHHHHHHHHH
Confidence            77776653  6667788888887654422211211 2  2556666655441             112233333556788


Q ss_pred             HHHHHHHhhhccc
Q psy9795         239 LVVSCKIFYSLNF  251 (337)
Q Consensus       239 l~lilKif~~~~~  251 (337)
                      +..|...||....
T Consensus       241 lvkIm~LyY~~m~  253 (859)
T KOG1241|consen  241 LVKIMSLYYEFME  253 (859)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=88.61  E-value=1.2  Score=27.25  Aligned_cols=30  Identities=3%  Similarity=0.056  Sum_probs=24.4

Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         157 LITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       157 Ll~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ++|.++++++++++..+..|..+|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            578888888888888888999998888764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1993|consensus

Probab=88.38  E-value=34  Score=36.96  Aligned_cols=215  Identities=16%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             hHHHHHHhhcccCCCCChhh----hHHHHHHHHHHHh-------CCChHHHHHHHHHhCCCChHHHHHHHHHHhcccccc
Q psy9795          32 EFFCSTQGVPNHDKNIQLES----RSPTENFLESVET-------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRN  100 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~----Rk~AE~~L~~~~~-------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~  100 (337)
                      +|..-+++.+-...+-|...    |+..---+.+.-.       .|-.-.+++.++.+ +.|..||..++-.+|-.|.. 
T Consensus       480 dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d-~~D~vV~Ltt~~tlkl~vDD-  557 (978)
T KOG1993|consen  480 DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQD-QNDLVVRLTTARTLKLVVDD-  557 (978)
T ss_pred             CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCc-cccceeehHHHHHHHHhhhh-
Confidence            46666666665554444333    3333333444322       23334455566555 45899999999999988854 


Q ss_pred             CcccCCCCCCCCHHHHHHHHHHHHHHH---ccCCH--HHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhC------CCC
Q psy9795         101 WPLVEDEPDKIHASDREAIKGLILHLM---LTSPE--AIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFG------TGD  169 (337)
Q Consensus       101 W~~~~~~~~~i~~e~K~~IK~~Ll~~L---~~~~~--~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~------s~d  169 (337)
                      |+-.++...++-    +.+-..+...+   ..++.  .|-+-++..|.....+--    | ....+++.+.      ++.
T Consensus       558 ~nF~~dsFlp~l----enlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~----P-~~~~ivq~lp~LWe~s~~e  628 (978)
T KOG1993|consen  558 WNFSEDSFLPYL----ENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA----P-YASTIVQYLPLLWEESEEE  628 (978)
T ss_pred             ccCChhhhhhhH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh----H-HHHHHHHHHHHHHhhhccC
Confidence            763333211111    11222222222   22222  233333444433332211    1 3333333332      122


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhh-----------------------------hHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9795         170 FHIINGVLHTAHSLFKRYRHEFKSQK-----------------------------LWTEIKFVLDNFAKPFTELFKATIN  220 (337)
Q Consensus       170 ~~~~~~aL~~L~~i~k~yr~~~~s~~-----------------------------l~~el~~il~~~~~~L~~lf~~l~~  220 (337)
                      +-..-+.|.+|+.++...+++  |.+                             ++.-.-.-.+.+.|-|+.+||.+..
T Consensus       629 ~lLr~alL~~L~~lV~alg~q--S~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~  706 (978)
T KOG1993|consen  629 PLLRCALLATLRNLVNALGAQ--SFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLY  706 (978)
T ss_pred             cHHHHHHHHHHHHHHHHhccC--CccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence            223445566777777665442  112                             2211112235677788888998888


Q ss_pred             HhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHH
Q psy9795         221 LVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPAL  269 (337)
Q Consensus       221 ~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f  269 (337)
                      ++..          ..+.|..+++|.++=+..+-+.++.+.....+..+
T Consensus       707 ~iE~----------ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~  745 (978)
T KOG1993|consen  707 IIEQ----------STENLPTVLMIISSYILLDNTVFLNDYAFGIFKKL  745 (978)
T ss_pred             HHHh----------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            7743          23445667777766666666655544433333333

>KOG1824|consensus

Probab=87.33  E-value=13  Score=40.72  Aligned_cols=135  Identities=13%  Similarity=0.102  Sum_probs=88.7

Q ss_pred             hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC
Q psy9795          30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE  107 (337)
Q Consensus        30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~  107 (337)
                      +.+++..+   +++=+||..+++++|-..|-.+..  -|.|+..+++.+.++.   .-+.+=..-||-.|.+.=.  +  
T Consensus       855 ~~e~~~~i---ieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqp---k~QyLLLhSlkevi~~~sv--d--  924 (1233)
T KOG1824|consen  855 QNELKDTI---IEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQP---KRQYLLLHSLKEVIVSASV--D--  924 (1233)
T ss_pred             chhhHHHH---HHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcch---HhHHHHHHHHHHHHHHhcc--c--
Confidence            34566655   445568889999999999987654  4789999998887632   2223444567777754211  1  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy9795         108 PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAH  181 (337)
Q Consensus       108 ~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~  181 (337)
                        .+ -..-+.|-..|..-.-....-.|+.+++|+..++..| |   ..|+|.|-..+.|+++...-.++.+.+
T Consensus       925 --~~-~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-p---esLlpkL~~~~~S~a~~~rs~vvsavK  991 (1233)
T KOG1824|consen  925 --GL-KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-P---ESLLPKLKLLLRSEASNTRSSVVSAVK  991 (1233)
T ss_pred             --hh-hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-h---HHHHHHHHHHhcCCCcchhhhhhheee
Confidence              00 1111223333333333334678999999999999987 3   369999999999998877666665543

>KOG1242|consensus

Probab=87.04  E-value=40  Score=35.05  Aligned_cols=202  Identities=14%  Similarity=0.105  Sum_probs=106.2

Q ss_pred             CCChHHHHHHHHHhC-CCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHH
Q psy9795          65 NQNYPLLILTLVERA-DVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLT--SPEAIQKQLSDA  141 (337)
Q Consensus        65 ~pgf~~~Ll~i~~~~-~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~--~~~~Ir~ql~~~  141 (337)
                      .|.....+-.++.+- +....+|++|.-..|-.... -.         +...|..+...|......  ..+.---++..+
T Consensus       211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~-~~---------~~aVK~llpsll~~l~~~kWrtK~aslellg~  280 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC-LS---------AYAVKLLLPSLLGSLLEAKWRTKMASLELLGA  280 (569)
T ss_pred             CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh-cC---------cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence            466666666666653 34567888776555544322 11         112233333222222222  112222233333


Q ss_pred             HHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHH-
Q psy9795         142 TAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATIN-  220 (337)
Q Consensus       142 i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~-  220 (337)
                      ++..+..-.-..-|+++|.+.+.+.+..+.....|-.|+..++..-+    .+++-.-+..+++.+.+|=-. -+.++. 
T Consensus       281 m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid----N~dI~~~ip~Lld~l~dp~~~-~~e~~~~  355 (569)
T KOG1242|consen  281 MADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID----NPDIQKIIPTLLDALADPSCY-TPECLDS  355 (569)
T ss_pred             HHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHhcCcccc-hHHHHHh
Confidence            33333222223678999999999999999999999999999888753    233333334444444443200 111111 


Q ss_pred             Hhccc---CCChhHHHHH------------HHHHHHHHHHhhhcccc-CChHHHHHhHHHHHHHHHHhhccCCCCCC
Q psy9795         221 LVGEH---KDNPTALKVI------------YNSLVVSCKIFYSLNFQ-DLPEYFEDNMVVWMPALHNLLVTDVPCLR  281 (337)
Q Consensus       221 ~~~~~---~~~~~~~~~~------------~e~l~lilKif~~~~~~-~lp~~~e~~l~~W~~~f~~iL~~~~p~l~  281 (337)
                      +....   .-+++++...            .++-+..++|+..++.. +=|.-+.+.++.-+..+...+..++|...
T Consensus       356 L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR  432 (569)
T KOG1242|consen  356 LGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR  432 (569)
T ss_pred             hcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence            11100   0011111111            12335567777766553 35777778888888888888888888643

>PRK09687 putative lyase; Provisional

Probab=85.99  E-value=18  Score=34.10  Aligned_cols=122  Identities=12%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             CCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHH
Q psy9795          45 KNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLIL  124 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll  124 (337)
                      .++|..+|..|-..|.++. .+.....+..++.+.  +..+|..|+-.|-..-.   .   .   ..    ....=..|.
T Consensus        33 ~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~---~---~---~~----~~~a~~~L~   96 (280)
T PRK09687         33 DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK--NPIERDIGADILSQLGM---A---K---RC----QDNVFNILN   96 (280)
T ss_pred             hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC--CHHHHHHHHHHHHhcCC---C---c---cc----hHHHHHHHH
Confidence            4567799999999998775 355666666665543  78999999977765321   1   0   00    111222333


Q ss_pred             HHH-ccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         125 HLM-LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       125 ~~L-~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      ..+ .+.+..||...+.++..+.... +...|.+++.+...+.+++......+...|..+
T Consensus        97 ~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~  155 (280)
T PRK09687         97 NLALEDKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI  155 (280)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence            343 3356789999999999986543 233588888888888888888888888888654

>KOG1991|consensus

Probab=85.64  E-value=62  Score=35.69  Aligned_cols=92  Identities=10%  Similarity=0.112  Sum_probs=62.4

Q ss_pred             CCChHHHHHHHHHh------CC-----CChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHH
Q psy9795          65 NQNYPLLILTLVER------AD-----VDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEA  133 (337)
Q Consensus        65 ~pgf~~~Ll~i~~~------~~-----~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~  133 (337)
                      -|++...+.+|+.+      +.     -+-..|.+|++.  ..+.+.        .+...+--..+-++++..+.+.-..
T Consensus       408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~--------s~~~~~mE~flv~hVfP~f~s~~g~  477 (1010)
T KOG1991|consen  408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKK--------SPYKSQMEYFLVNHVFPEFQSPYGY  477 (1010)
T ss_pred             hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccC--------CchHHHHHHHHHHHhhHhhcCchhH
Confidence            47899999999882      11     123455565554  233221        1233444466777777777777789


Q ss_pred             HHHHHHHHHHHHHhhhCCC--CChHHHHHHHHhhC
Q psy9795         134 IQKQLSDATAIIGKSDFPD--KWPSLITDMVAKFG  166 (337)
Q Consensus       134 Ir~ql~~~i~~Ia~~DfP~--~WPeLl~~L~~~l~  166 (337)
                      +|.+.|.+++.++..||++  .--+.++...+++.
T Consensus       478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~  512 (1010)
T KOG1991|consen  478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLL  512 (1010)
T ss_pred             HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999984  45566777777776

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=85.54  E-value=14  Score=36.46  Aligned_cols=30  Identities=50%  Similarity=0.821  Sum_probs=20.9

Q ss_pred             cchhHHHhhhHHHHHHHHHHhhhhhhhhcc
Q psy9795         294 ISDVETRRRAACDFVKILCKYMEDKMMGTS  323 (337)
Q Consensus       294 ~~~~~~~k~~~~~~~~~~~k~~~~~~~~~~  323 (337)
                      |+...+.|++.|+|+...+|+.+..+..+.
T Consensus       221 ~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~  250 (370)
T PF08506_consen  221 GSDSDTRRRAACDFLRSLCKKFEKQVTSIL  250 (370)
T ss_dssp             SS---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence            567788888899999998887777655544

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=84.87  E-value=6.5  Score=33.91  Aligned_cols=39  Identities=21%  Similarity=0.331  Sum_probs=30.1

Q ss_pred             CCChHHHHHHHHhhCCC-CHHHHHHHHHHHHHH--Hhhhhhh
Q psy9795         152 DKWPSLITDMVAKFGTG-DFHIINGVLHTAHSL--FKRYRHE  190 (337)
Q Consensus       152 ~~WPeLl~~L~~~l~s~-d~~~~~~aL~~L~~i--~k~yr~~  190 (337)
                      ..+|+|++.+.+.+.++ +...+.-++++++-+  ++.|+++
T Consensus         6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen    6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            56899999999999876 556677888888875  4556665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=82.81  E-value=15  Score=31.94  Aligned_cols=108  Identities=11%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             ChhhhHHHHHHHHHHHh-CCC----hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHH
Q psy9795          48 QLESRSPTENFLESVET-NQN----YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGL  122 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~-~pg----f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~  122 (337)
                      |+.+|..|=..+-.+-. .|+    +...+...+.++  ++.||..|.+.|.+.+.+.+..       +    |..+=..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik-------~----k~~l~~~   67 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIK-------V----KGQLFSR   67 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCcee-------e----hhhhhHH
Confidence            45667777666655433 454    455666666654  6899999999999999876541       1    1233345


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC
Q psy9795         123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG  168 (337)
Q Consensus       123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~  168 (337)
                      ++.++.++++.||.....++..+...-.|+.-.+.+++++..+++.
T Consensus        68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~  113 (178)
T PF12717_consen   68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC  113 (178)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence            5667777888999999999999999877776667777777766653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=82.35  E-value=16  Score=37.42  Aligned_cols=128  Identities=8%  Similarity=0.066  Sum_probs=83.3

Q ss_pred             ChhhhHHHHHHHHHHHh-------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795          48 QLESRSPTENFLESVET-------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK  120 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~-------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK  120 (337)
                      +.+....+-.-|+.+-.       .|++...|..-+.++  +..||.+|.-.+++.+... ...   ...+.+   ..+=
T Consensus        51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~-~~~---~~~~~~---~~l~  121 (503)
T PF10508_consen   51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHS-EGA---AQLLVD---NELL  121 (503)
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCC-HHH---HHHhcC---ccHH
Confidence            33444555555554332       245666666666654  6899999999898887442 110   001111   2245


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHH-----HHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSL-----ITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeL-----l~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ..++.++.+.+..|.+..+.++..|+++.  ..-..+     +..|.+.+..+|...+..++.++-.+++.
T Consensus       122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~  190 (503)
T PF10508_consen  122 PLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH  190 (503)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence            56788888888899999999999999863  333344     78888888775655566777777777664

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF13925 Katanin_con80: con80 domain of Katanin

Probab=81.88  E-value=33  Score=29.63  Aligned_cols=54  Identities=20%  Similarity=0.317  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhhhCCCCCh-----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhh
Q psy9795         137 QLSDATAIIGKSDFPDKWP-----SLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHE  190 (337)
Q Consensus       137 ql~~~i~~Ia~~DfP~~WP-----eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~  190 (337)
                      .+.+++..+....=|+.|+     +++|.+..+++|....++.+||.+|..+++.|...
T Consensus        45 vlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~  103 (164)
T PF13925_consen   45 VLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV  103 (164)
T ss_pred             HHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4577788888555567785     89999999999999999999999999999998654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=81.82  E-value=16  Score=40.34  Aligned_cols=110  Identities=12%  Similarity=0.138  Sum_probs=68.5

Q ss_pred             CCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHH
Q psy9795          45 KNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLIL  124 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll  124 (337)
                      .++|+.+|+.|=+.|..+. .++....|...+.+  .+..||..|+-.|..... .+.          ..      ..+.
T Consensus       631 ~D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D--~d~~VR~~Aa~aL~~l~~-~~~----------~~------~~L~  690 (897)
T PRK13800        631 ADPDPGVRRTAVAVLTETT-PPGFGPALVAALGD--GAAAVRRAAAEGLRELVE-VLP----------PA------PALR  690 (897)
T ss_pred             cCCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh-ccC----------ch------HHHH
Confidence            3788999999999998875 46778888877754  378999999888865532 111          00      1333


Q ss_pred             HHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795         125 HLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHS  182 (337)
Q Consensus       125 ~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~  182 (337)
                      ..|.+.+..||.....++..+...+        ...+...+.++|+.....++..|..
T Consensus       691 ~~L~~~d~~VR~~A~~aL~~~~~~~--------~~~l~~~L~D~d~~VR~~Av~aL~~  740 (897)
T PRK13800        691 DHLGSPDPVVRAAALDVLRALRAGD--------AALFAAALGDPDHRVRIEAVRALVS  740 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHHhhccCC--------HHHHHHHhcCCCHHHHHHHHHHHhc
Confidence            4444455666666666665543211        1234555666666666666666654

>PTZ00429 beta-adaptin; Provisional

Probab=80.28  E-value=92  Score=33.73  Aligned_cols=65  Identities=9%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795         123 ILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH  189 (337)
Q Consensus       123 Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~  189 (337)
                      |.+...+.+..++.....+|+.+|. -||......++.|++++..+. +.+.-++.++..|+++|..
T Consensus       373 L~eYa~d~D~ef~r~aIrAIg~lA~-k~~~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~IlrkyP~  437 (746)
T PTZ00429        373 LAEYASGVDMVFVVEVVRAIASLAI-KVDSVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVRKYPE  437 (746)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHCcc
Confidence            3333334455677888888888884 578888889999999997653 2344578999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
1wa5_C	960	Crystal Structure Of The Exportin Cse1p Complexed W		8e-42
1z3h_A	968	The Exportin Cse1 In Its Cargo-free, Cytoplasmic St		8e-42

>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 137/227 (60%), Gaps = 1/227 (0%)
Query: 55  TENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS 114
           +E  L  +ET   + L +L ++   ++ ++ R+AGA+ FKN++KR W + E+    + A+
Sbjct: 23  SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKW-VDENGNHLLPAN 81
Query: 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIIN 174
           + E IK  I+ LM++ P  +Q Q+ +A + I  SDFPD+WP+L++D+ ++    D     
Sbjct: 82  NVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNK 141
Query: 175 GVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKV 234
           GVL  AHS+FKR+R  F+S +L+ EIK VLD F  PF  L K     +  +++N  +L +
Sbjct: 142 GVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201
Query: 235 IYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
           +++ L+V  K++Y  N QD+PE+FEDN+ V M   H  L    P L 
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLE 248

>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 137/227 (60%), Gaps = 1/227 (0%)
Query: 55  TENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS 114
           +E  L  +ET   + L +L ++   ++ ++ R+AGA+ FKN++KR W + E+    + A+
Sbjct: 23  SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKW-VDENGNHLLPAN 81
Query: 115 DREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIIN 174
           + E IK  I+ LM++ P  +Q Q+ +A + I  SDFPD+WP+L++D+ ++    D     
Sbjct: 82  NVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNK 141
Query: 175 GVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKV 234
           GVL  AHS+FKR+R  F+S +L+ EIK VLD F  PF  L K     +  +++N  +L +
Sbjct: 142 GVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201
Query: 235 IYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
           +++ L+V  K++Y  N QD+PE+FEDN+ V M   H  L    P L 
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLE 248

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	5e-54
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-25
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	5e-18
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-17
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	7e-16
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	9e-10

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960

 Score =  189 bits (480), Expect = 5e-54
 Identities = 88/270 (32%), Positives = 147/270 (54%), Gaps = 6/270 (2%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109
            +   +E  L  +ET   + L +L ++   ++ ++ R+AGA+ FKN++KR W   E+   
Sbjct: 18  STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWV-DENGNH 76

Query: 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
            + A++ E IK  I+ LM++ P  +Q Q+ +A + I  SDFPD+WP+L++D+ ++    D
Sbjct: 77  LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD 136

Query: 170 FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNP 229
                GVL  AHS+FKR+R  F+S +L+ EIK VLD F  PF  L K     +  +++N 
Sbjct: 137 MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196

Query: 230 TALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNS 289
            +L ++++ L+V  K++Y  N QD+PE+FEDN+ V M   H  L    P L         
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDE---- 252

Query: 290 FRRFISDVETRRRAACDFVKILCKYMEDKM 319
                S +   + +  + V++     ED  
Sbjct: 253 -TEHASVLIKVKSSIQELVQLYTTRYEDVF 281

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score =  105 bits (263), Expect = 3e-25
 Identities = 37/293 (12%), Positives = 84/293 (28%), Gaps = 29/293 (9%)

Query: 50  ESRSPTENFLESVETNQNY-PLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEP 108
             +   +  LE +    ++   LI  L +    D   R    +  KN VK ++       
Sbjct: 28  TIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF------- 80

Query: 109 DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168
                   + IK   L+ +  S   I+  +      I        WP L+  + +   + 
Sbjct: 81  QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE 140

Query: 169 DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELF----KATINLVGE 224
           D++   G       + +       S  L   +  ++  F + F           +  V +
Sbjct: 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ 200

Query: 225 -HKDNPTALKVIYNSLV-------------VSCKIFYSLN--FQDLPEYFEDNMVVWMPA 268
                  AL +  +S +             V   +  +L    +   +    +M   +  
Sbjct: 201 FIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY 260

Query: 269 LHNLLVTDVPCLRTDSI-FVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
           +          +  ++  F  +        +   R     + +L   M+   +
Sbjct: 261 MLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 313

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 83.7 bits (206), Expect = 5e-18
 Identities = 51/302 (16%), Positives = 99/302 (32%), Gaps = 23/302 (7%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVE---RADVDMTIRIAGAVAFKNYVKRNWPLVED 106
                 + FLE     +N P  ++ L             R+A  +  KN +    P ++ 
Sbjct: 16  LELEAAQKFLER-AAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74

Query: 107 EPDK----IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDM 161
           +  +    I A+ R  +K  +L   L +        S   A I  ++ P ++WP LI  +
Sbjct: 75  QYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQL 133

Query: 162 VAKFGTGDF--HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTEL----- 214
           VA     +   H+    L     + +    E    K    +  ++    K          
Sbjct: 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193

Query: 215 -FKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLL 273
              A +N +   K N       +  + V C+     + +      + N+V  M   +  +
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ-NLVKIMSLYYQYM 252

Query: 274 VTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPP 333
            T +      ++F  +     SD++       +F   +C    D  +  S A  +   P 
Sbjct: 253 ETYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308

Query: 334 IP 335
             
Sbjct: 309 HT 310

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 81.8 bits (201), Expect = 3e-17
 Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 29/305 (9%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVE---RADVDMTIRIAGAVAFKNYVKRNWPLVED 106
                 + FLE     +N P  ++ L             R+A  +  KN +    P ++ 
Sbjct: 16  LELEAAQKFLER-AAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74

Query: 107 EPD----KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITDM 161
           +       I A+ R  +K  +LH  L +        S   A I  ++ P  +WP LI  +
Sbjct: 75  QYQQRWLAIDANARREVKNYVLHT-LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQL 133

Query: 162 VAKFGTGD--FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTEL----- 214
           VA     +   H+    L     + +    E    K    +  ++    K          
Sbjct: 134 VANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193

Query: 215 -FKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLL 273
              A +N +   K N       +  + V C+     + +      +         L  ++
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ--------NLVKIM 245

Query: 274 VTDVPCLRT---DSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDL 330
                 + T    ++F  +     SD++       +F   +C    D  +  S A  +  
Sbjct: 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305

Query: 331 FPPIP 335
            P   
Sbjct: 306 PPEHT 310

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 77.5 bits (190), Expect = 7e-16
 Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 32/293 (10%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVE---RADVDMTIRIAGAVAFKNYVKRNWPLVED 106
             R  +E  L+ +  N N+        +     +  +  RI  A+  KN +     +   
Sbjct: 20  NIRLTSETQLKKLS-NDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78

Query: 107 EP-----DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITD 160
           +       ++    +  IK   L  +++    I    +   A I   + P   WP L+  
Sbjct: 79  QFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI 138

Query: 161 MVAKFGTGDF-HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATI 219
           MV   G     ++    L     +          +    + + ++ +       + +   
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMC---------ESADPQSQALVSSSNNILIAIVQGAQ 189

Query: 220 NLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQD-----LPEYFEDNM----VVWMPALH 270
           +          AL  + +SL+           ++     + E  +             L 
Sbjct: 190 STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249

Query: 271 NLLVTDVPCLR---TDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
            ++      ++     +++  +     S  +       +F   +C+   D   
Sbjct: 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073

 Score = 59.1 bits (142), Expect = 9e-10
 Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 19/197 (9%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109
             +   +  L  ++ + +    + T++E    +M  +  G    +N +K  W ++     
Sbjct: 43  AQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRN-- 99

Query: 110 KIHASDREAIKGLILHLM---------LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITD 160
                  E IK  ++ L+         +   +    +L+     I K ++P  WP+ I+D
Sbjct: 100 -----QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISD 154

Query: 161 MVAKFGTGDFHIING--VLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKAT 218
           +V    T +    N   +L         +     +Q     +K  + N      +L +  
Sbjct: 155 IVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFV 214

Query: 219 INLVGEHKDNPTALKVI 235
           +            L+ +
Sbjct: 215 MENSQNAPLVHATLETL 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.89
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.88
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.85
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.84
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.84
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.83
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.81
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.76
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.74
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.72
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.59
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.51
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.64
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.63
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.58
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.42
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.39
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.36
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.35
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.34
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.28
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.96
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	95.91
1qgr_A	876	Protein (importin beta subunit); transport recepto	95.8
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	95.66
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	95.56
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	95.31
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.26
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	95.18
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	94.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.82
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	94.81
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	94.73
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	94.55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	94.47
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.35
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	94.12
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	93.37
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	93.25
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	93.12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	92.56
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	92.52
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	92.43
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	92.25
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	92.1
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	91.98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	91.91
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	91.65
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	91.08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	90.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	90.85
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	90.29
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	88.93
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	88.59
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	88.5
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	88.35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	85.54
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	85.49
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	84.76
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	84.29
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	83.81
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	82.83
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	82.47
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	80.81
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	80.46
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	80.43

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=100.00  E-value=1.1e-35  Score=319.37  Aligned_cols=242  Identities=34%  Similarity=0.631  Sum_probs=214.0

Q ss_pred             HHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHH
Q psy9795          37 TQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDR  116 (337)
Q Consensus        37 l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K  116 (337)
                      +.++|.++.|||+++|  ||++|++++++|||+.+|++++.+.+.+.++|++|+++|||.|+++|...++ ...+++++|
T Consensus         7 l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~-~~~l~~~~k   83 (960)
T 1wa5_C            7 VAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG-NHLLPANNV   83 (960)
T ss_dssp             HHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS-CBSSCHHHH
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc-CCCCCHHHH
Confidence            3444555667888888  9999999999999999999999988788999999999999999999985432 247999999


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy9795         117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKL  196 (337)
Q Consensus       117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~~~s~~l  196 (337)
                      +.||+.|++++.++++.||++++.+|+.|+++|||++||+|++.|++.++++|...++++|.+|+++|++||+.+++++.
T Consensus        84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~  163 (960)
T 1wa5_C           84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDEL  163 (960)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHHHHHHHHhhccC
Q psy9795         197 WTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTD  276 (337)
Q Consensus       197 ~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W~~~f~~iL~~~  276 (337)
                      +.+++.++..+.++++++|..+.+.+.....+.+..+...++++.++|+|+++++.++|+++++++..|++.|..+|..+
T Consensus       164 ~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  243 (960)
T 1wa5_C          164 FLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYS  243 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCC
Confidence            88999999999999999999887766543333333456788999999999999999999999999999999999999998


Q ss_pred             CCCCC
Q psy9795         277 VPCLR  281 (337)
Q Consensus       277 ~p~l~  281 (337)
                      .|.+.
T Consensus       244 ~p~~~  248 (960)
T 1wa5_C          244 NPLLE  248 (960)
T ss_dssp             SCCCC
T ss_pred             CCccc
Confidence            77544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.89  E-value=1.3e-22  Score=214.67  Aligned_cols=151  Identities=13%  Similarity=0.201  Sum_probs=138.6

Q ss_pred             HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHh-CCCChHHHHHHHHHHhccccccCcccCCCCCCC
Q psy9795          33 FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVER-ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI  111 (337)
Q Consensus        33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~-~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i  111 (337)
                      -..-+.++|.++.|||+++|++||++|++++++|+|..+|+.++.+ .+.+..+|++|+++|||.|+++|.       .+
T Consensus        11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-------~~   83 (852)
T 4fdd_A           11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-------NF   83 (852)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-------GC
T ss_pred             hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-------CC
Confidence            3444555666777899999999999999999999999999999986 567899999999999999999997       68


Q ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhhh
Q psy9795         112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRHE  190 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~~  190 (337)
                      ++++|..||+.++++|.+.++.||++++.+++.|+++|+|+.||++++.+++.+++++...+++++.+|+.+|+++...
T Consensus        84 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~  162 (852)
T 4fdd_A           84 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI  162 (852)
T ss_dssp             CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999888889999999999999999999999999999999999999999999999999999998653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.88  E-value=2.6e-22  Score=195.15  Aligned_cols=151  Identities=17%  Similarity=0.241  Sum_probs=134.7

Q ss_pred             HhhcccCCCCChhhhHHHHHHHHHHHh--CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC----CCCC
Q psy9795          38 QGVPNHDKNIQLESRSPTENFLESVET--NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE----PDKI  111 (337)
Q Consensus        38 ~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~----~~~i  111 (337)
                      .++|.++.|||+++|++||++|+++++  .|+|+..|++++.+.+.+..+|++|+++|||.|+++|....+.    +..+
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l   83 (462)
T 1ibr_B            4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI   83 (462)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence            345666778999999999999999987  5999999999999876789999999999999999998643221    3469


Q ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhhh
Q psy9795         112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~yr  188 (337)
                      ++++|+.||+.|++.|.+.+..+ ++++.+|+.|+++++| +.||++++.|++.++++  |...+++++.+|+.++++++
T Consensus        84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~  162 (462)
T 1ibr_B           84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID  162 (462)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999988888 9999999999999999 59999999999999988  89999999999999999875


Q ss_pred             h
Q psy9795         189 H  189 (337)
Q Consensus       189 ~  189 (337)
                      +
T Consensus       163 ~  163 (462)
T 1ibr_B          163 P  163 (462)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.85  E-value=9.1e-20  Score=197.52  Aligned_cols=221  Identities=11%  Similarity=0.214  Sum_probs=161.3

Q ss_pred             hhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHH
Q psy9795          39 GVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREA  118 (337)
Q Consensus        39 ~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~  118 (337)
                      +++....|||++.|++||++|++++++|+++..+.+++.++ .+..+|++|+++|||.|+++|.       .+++++|..
T Consensus        20 ~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-~~~~vr~~aa~~Lk~~i~~~W~-------~l~~~~~~~   91 (1049)
T 3m1i_C           20 QVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-TNPQSKFIALSILDKLITRKWK-------LLPNDHRIG   91 (1049)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-SCHHHHHHHHHHHHHHHHHTGG-------GSCHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhhCc-------cCCHHHHHH
Confidence            33444556777899999999999999999999999999874 4899999999999999999997       799999999


Q ss_pred             HHHHHHHHHccCC---------HHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795         119 IKGLILHLMLTSP---------EAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH  189 (337)
Q Consensus       119 IK~~Ll~~L~~~~---------~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~  189 (337)
                      ||+.|++.+.+.+         +.||++++.+++.|+++|||++||++++.+++.++ ++....+++|.+|..++++...
T Consensus        92 ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~  170 (1049)
T 3m1i_C           92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFD  170 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHH
Confidence            9999999998742         68999999999999999999999999999999997 4555567777777777765421


Q ss_pred             ---hhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhc-cccCChHHH-------
Q psy9795         190 ---EFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSL-NFQDLPEYF-------  258 (337)
Q Consensus       190 ---~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~-~~~~lp~~~-------  258 (337)
                         ......-+.+++.   .+...+..+|..+.+++.... +.       ++...+++++.++ .+.+++..+       
T Consensus       171 ~~~~~~~~~r~~~lk~---~l~~~~~~i~~~~~~~l~~~~-~~-------~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~  239 (1049)
T 3m1i_C          171 FSAEQMTQAKALHLKN---SMSKEFEQIFKLCFQVLEQGS-SS-------SLIVATLESLLRYLHWIPYRYIYETNILEL  239 (1049)
T ss_dssp             SCTTTSCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCC-CH-------HHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred             hcchhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC-CH-------HHHHHHHHHHHHHHhhCCHHHHhhhhHHHH
Confidence               1011111223332   233334456666666554321 22       2346667777554 345544322       


Q ss_pred             --------HHhHHHHHHHHHHhhccCCCC
Q psy9795         259 --------EDNMVVWMPALHNLLVTDVPC  279 (337)
Q Consensus       259 --------e~~l~~W~~~f~~iL~~~~p~  279 (337)
                              .+.-..|++.+..++....|+
T Consensus       240 l~~~~l~~~~~~~~a~~~L~~i~~~~~~~  268 (1049)
T 3m1i_C          240 LSTKFMTSPDTRAITLKCLTEVSNLKIPQ  268 (1049)
T ss_dssp             HHTHHHHSHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHHhCCCCc
Confidence                    123345889999999886554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.84  E-value=8.7e-20  Score=200.47  Aligned_cols=230  Identities=12%  Similarity=0.109  Sum_probs=157.4

Q ss_pred             hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCC
Q psy9795          32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI  111 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i  111 (337)
                      ++.++++.+++++  +|++.|++||++|++++++|+++..+..++.+.+.+..+|++|++.|||.|+++|.       .+
T Consensus        12 ~l~~~l~~~~~p~--~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~-------~l   82 (1204)
T 3a6p_A           12 QLVKAVTVMMDPN--STQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN-------GM   82 (1204)
T ss_dssp             HHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG-------GS
T ss_pred             HHHHHHHHHhCCC--CChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc-------cC
Confidence            3555555555432  37789999999999999999777777776665556899999999999999999997       79


Q ss_pred             CHHHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795         112 HASDREAIKGLILHLMLTS-------PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLF  184 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~~-------~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~  184 (337)
                      ++++|..||+.+++.+.+.       ++.||++++.+++.|+++|||++||++++.+++.+++ +....+++|.+|..++
T Consensus        83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~  161 (1204)
T 3a6p_A           83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLA  161 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence            9999999999999999753       5789999999999999999999999999999999976 5567899999999999


Q ss_pred             hhhh-hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhccc----------CCChhHHHHHHHHHHHHHHHhhhccccC
Q psy9795         185 KRYR-HEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEH----------KDNPTALKVIYNSLVVSCKIFYSLNFQD  253 (337)
Q Consensus       185 k~yr-~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~----------~~~~~~~~~~~e~l~lilKif~~~~~~~  253 (337)
                      ++.. +......-+++++..+..-++   .+|+.+.+++...          .++........++...+++++.+...--
T Consensus       162 Eev~~~~~~~~~r~~~l~~~l~~~~~---~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi  238 (1204)
T 3a6p_A          162 EDVVTFQTLPPQRRRDIQQTLTQNME---RIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV  238 (1204)
T ss_dssp             HHHHTSCCSCHHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred             HHHccccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc
Confidence            8732 211111212233333332222   4444444433221          1111111223456678888887665421


Q ss_pred             ChHHHHHhHHHHHHHHHHhhc
Q psy9795         254 LPEYFEDNMVVWMPALHNLLV  274 (337)
Q Consensus       254 lp~~~e~~l~~W~~~f~~iL~  274 (337)
                      -..++.+.-..+++.+...+.
T Consensus       239 ~~~~i~~~~~~ll~~l~~~l~  259 (1204)
T 3a6p_A          239 SMSHITAENCKLLEILCLLLN  259 (1204)
T ss_dssp             CHHHHHTTTSHHHHHHHHGGG
T ss_pred             CHHHHHhccchHHHHHHHHcC
Confidence            112222221235555555444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.84  E-value=6.1e-20  Score=196.07  Aligned_cols=145  Identities=19%  Similarity=0.270  Sum_probs=127.5

Q ss_pred             hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCC
Q psy9795          32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI  111 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i  111 (337)
                      ++.+++++..   .+||++.|++||++|++++++|+++..+++++.+ +.+..+|++|+++|||.|+++|.       .+
T Consensus        25 ~l~~~l~~l~---~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~-------~l   93 (963)
T 2x19_B           25 NVEKALHQLY---YDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWS-------DI   93 (963)
T ss_dssp             HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGG-------GS
T ss_pred             HHHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHH-------hC
Confidence            3444444433   3578899999999999999999999999999876 46899999999999999999997       79


Q ss_pred             CHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCC-----CCHHHHHHHHHHHHHH
Q psy9795         112 HASDREAIKGLILHLMLT---SPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGT-----GDFHIINGVLHTAHSL  183 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~---~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s-----~d~~~~~~aL~~L~~i  183 (337)
                      ++++|..||+.|++.+.+   .++.||++++.+++.|+++|||++||++++.+++.+++     ++.....++|.+|..+
T Consensus        94 ~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l  173 (963)
T 2x19_B           94 PTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL  173 (963)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence            999999999999999988   36899999999999999999999999999999999986     3666789999999999


Q ss_pred             Hhhh
Q psy9795         184 FKRY  187 (337)
Q Consensus       184 ~k~y  187 (337)
                      +++.
T Consensus       174 ~ee~  177 (963)
T 2x19_B          174 PEEF  177 (963)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9753

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.83  E-value=3e-20  Score=194.52  Aligned_cols=151  Identities=15%  Similarity=0.197  Sum_probs=134.5

Q ss_pred             hhcccC-CCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC----CCC-
Q psy9795          39 GVPNHD-KNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE----PDK-  110 (337)
Q Consensus        39 ~tL~~~-~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~----~~~-  110 (337)
                      ++|.++ .|||+++|++||++|++++++  |+|+..|++++.+.+.+.++|++|+++|||.|+++|....+.    +.. 
T Consensus         8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~   87 (861)
T 2bpt_A            8 QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQ   87 (861)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhh
Confidence            444455 678999999999999999886  999999999999876789999999999999999999643221    234 


Q ss_pred             CCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhhh
Q psy9795         111 IHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTG-DFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       111 i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~-d~~~~~~aL~~L~~i~k~yr  188 (337)
                      +++++|..||+.+++.|.+.++.+|++++.+++.|+++||| +.||++++.|++.++++ |...+++++.+++.+++++.
T Consensus        88 l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~  167 (861)
T 2bpt_A           88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD  167 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999998899999999999999999999 59999999999999998 99999999999999999875


Q ss_pred             h
Q psy9795         189 H  189 (337)
Q Consensus       189 ~  189 (337)
                      .
T Consensus       168 ~  168 (861)
T 2bpt_A          168 P  168 (861)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.81  E-value=1.7e-19  Score=193.20  Aligned_cols=193  Identities=11%  Similarity=0.154  Sum_probs=137.0

Q ss_pred             cCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHH
Q psy9795          43 HDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGL  122 (337)
Q Consensus        43 ~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~  122 (337)
                      ...+||++.|++||+.|+++++.|+++..+++++.. +.+..+|++|+++|||.|+++|.       .+++++|..||+.
T Consensus        15 ~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~-------~l~~~~~~~ir~~   86 (971)
T 2x1g_F           15 SFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWH-------EVPPENREELKQK   86 (971)
T ss_dssp             HHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGG-------GCCGGGHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHh-------hCCHHHHHHHHHH
Confidence            344578899999999999999999999999999876 45899999999999999999997       7999999999999


Q ss_pred             HHHHHccC---CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHhh-hhhhhh
Q psy9795         123 ILHLMLTS---PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG------DFHIINGVLHTAHSLFKR-YRHEFK  192 (337)
Q Consensus       123 Ll~~L~~~---~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~------d~~~~~~aL~~L~~i~k~-yr~~~~  192 (337)
                      |++.+.+.   ++.||++++.+++.|++++|| .||++++.+++.++++      +......+|.+|..++++ +++.  
T Consensus        87 ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~--  163 (971)
T 2x1g_F           87 ILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH--  163 (971)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccC--
Confidence            99999873   689999999999999999999 9999999999999875      567889999999999975 3332  


Q ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhcc
Q psy9795         193 SQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLN  250 (337)
Q Consensus       193 s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~  250 (337)
                      ..+-+.+++..+....+.+..++..+++...+...+..    ..++...++|++.+..
T Consensus       164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~----~~~~~~~al~~l~~~~  217 (971)
T 2x1g_F          164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAE----AYSNMNRAVKCVGTWI  217 (971)
T ss_dssp             CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHH----HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcc----chhHHHHHHHHHHHHH
Confidence            11222333444444455444455555443221111111    1234566666665433

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.76  E-value=2.2e-17  Score=178.60  Aligned_cols=222  Identities=10%  Similarity=0.194  Sum_probs=155.9

Q ss_pred             hHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCC
Q psy9795          32 EFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKI  111 (337)
Q Consensus        32 ~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i  111 (337)
                      ++-+++....    +|+++.|++|+++|+++++.|+++..+.+++.++ .+..+|++|+++|||.|+++|.       .+
T Consensus        17 ~Le~av~~ly----~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-~~~~vR~faa~~Lk~~I~~~W~-------~L   84 (1023)
T 4hat_C           17 LLDQVVSTFY----QGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS-TNPQSKFIALSILDKLITRKWK-------LL   84 (1023)
T ss_dssp             HHHHHHHHHH----HCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHC-CCHHHHHHHHHHHHHHHHHHGG-------GS
T ss_pred             HHHHHHHHHh----CCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhh-------cC
Confidence            3444444444    4555799999999999999999999999999764 4789999999999999999997       79


Q ss_pred             CHHHHHHHHHHHHHHHccC---------CHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795         112 HASDREAIKGLILHLMLTS---------PEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHS  182 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~~---------~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~  182 (337)
                      ++++|..||+.+++.+.+.         ++.++++++.+++.|+++|||++||++++.+++.++++ ......+|.+|..
T Consensus        85 ~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~  163 (1023)
T 4hat_C           85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKL  163 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence            9999999999999999762         35688889999999999999999999999999999765 4567888888888


Q ss_pred             HHhhh-hh--hhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhcc-ccCChHHH
Q psy9795         183 LFKRY-RH--EFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLN-FQDLPEYF  258 (337)
Q Consensus       183 i~k~y-r~--~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~-~~~lp~~~  258 (337)
                      +.++- ++  ..-+..-+..++..+..-   +..++..+..++.... +++       +...++|++.+.+ |.++...+
T Consensus       164 L~EEV~~~~~~~l~~~r~~~lk~~l~~~---~~~I~~ll~~iL~~~~-~~~-------l~~~~L~~l~s~l~WI~i~~i~  232 (1023)
T 4hat_C          164 LSEEVFDFSAEQMTQAKALHLKNSMSKE---FEQIFKLCFQVLEQGA-SSS-------LIVATLESLLRYLHWIPYRYIY  232 (1023)
T ss_dssp             HHHHHHTSCTTTSCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCS-SCH-------HHHHHHHHHHHHTTTSCTHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCC-CHH-------HHHHHHHHHHHHHHhCCHHHhc
Confidence            88872 22  100111122333333333   3355555555554322 222       3456777776544 33332211


Q ss_pred             H---------------HhHHHHHHHHHHhhccCC
Q psy9795         259 E---------------DNMVVWMPALHNLLVTDV  277 (337)
Q Consensus       259 e---------------~~l~~W~~~f~~iL~~~~  277 (337)
                      .               +.-..-++.+..++....
T Consensus       233 ~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~  266 (1023)
T 4hat_C          233 ETNILELLSTKFMTSPDTRAITLKCLTEVSNLKI  266 (1023)
T ss_dssp             SSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCC
T ss_pred             chhHHHHHHHHHcCCHHHHHHHHHHHHHHHcccc
Confidence            1               122335667777777554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.74  E-value=3.4e-17  Score=171.64  Aligned_cols=148  Identities=18%  Similarity=0.273  Sum_probs=127.7

Q ss_pred             hhcccCCCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccC----CCCCCCC
Q psy9795          39 GVPNHDKNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE----DEPDKIH  112 (337)
Q Consensus        39 ~tL~~~~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~----~~~~~i~  112 (337)
                      ++|....|||+++|++||++|+++..+  |+|+..|++++.+.+.+..+|++|+++|||.+...|...+    ..|..++
T Consensus         5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~   84 (876)
T 1qgr_A            5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID   84 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCC
Confidence            344555678999999999999999886  9999999999998666899999999999999864432100    0012799


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhh
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~y  187 (337)
                      +++|..||+.+++.+.+.+..+ ++++.+++.|+++++| ++||++++.+.+.++++  +...+++++.+|..+++.+
T Consensus        85 ~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~  161 (876)
T 1qgr_A           85 ANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI  161 (876)
T ss_dssp             HHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998877778 9999999999999999 89999999999999988  8889999999999999976

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.72  E-value=1.3e-16  Score=172.58  Aligned_cols=143  Identities=17%  Similarity=0.246  Sum_probs=124.1

Q ss_pred             HHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHH
Q psy9795          35 CSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS  114 (337)
Q Consensus        35 ~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e  114 (337)
                      +.+.+++.+..+||++.|++|+++|++++++|+++..+.+++.++ .+..+|++|++.|||.|+++|.       .++++
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s-~~~~vR~fAa~~L~~~I~~~W~-------~L~~e   99 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS-QNMNTKYYGLQILENVIKTRWK-------ILPRN   99 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---C-CSHHHHHHHHHHHHHHHHHTGG-------GSCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhh-------hCCHH
Confidence            345555566667788999999999999999999999999998764 5899999999999999999997       79999


Q ss_pred             HHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         115 DREAIKGLILHLMLT---------SPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       115 ~K~~IK~~Ll~~L~~---------~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      +|..||+.+++.+.+         .++.++++++.+++.|+++|||+.||++++++++.+++ +....+.+|.+|..+.+
T Consensus       100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E  178 (1073)
T 3gjx_A          100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSE  178 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999975         13678899999999999999999999999999999864 44678889999999999


Q ss_pred             h
Q psy9795         186 R  186 (337)
Q Consensus       186 ~  186 (337)
                      +
T Consensus       179 E  179 (1073)
T 3gjx_A          179 E  179 (1073)
T ss_dssp             H
T ss_pred             H
Confidence            8

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.59  E-value=2.5e-14  Score=154.24  Aligned_cols=142  Identities=8%  Similarity=0.140  Sum_probs=119.8

Q ss_pred             HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCC-ChHHHHHHHHHHhccccccCcccCCCCCCC
Q psy9795          33 FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADV-DMTIRIAGAVAFKNYVKRNWPLVEDEPDKI  111 (337)
Q Consensus        33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~-~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i  111 (337)
                      ..+.++.++++  ++|++.|++|++.|+++++.|+++..+..++.+++. +..+|.+|+..|||.|+ .          +
T Consensus         8 v~~Al~~~~~p--~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~----------l   74 (980)
T 3ibv_A            8 VENAVEAALDP--SVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR-E----------W   74 (980)
T ss_dssp             HHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-H----------C
T ss_pred             HHHHHHHHhCC--CCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-h----------C
Confidence            34444444432  348899999999999999999999999999987653 89999999999999998 2          5


Q ss_pred             CHH----HHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy9795         112 HAS----DREAIKGLILHLMLT-----SPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDF-HIINGVLHTAH  181 (337)
Q Consensus       112 ~~e----~K~~IK~~Ll~~L~~-----~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~-~~~~~aL~~L~  181 (337)
                      +++    +|..||+.|++.+.+     .++.||++++.+++.|++++||+.||++++.+++.+++++. ..+...|++|.
T Consensus        75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~  154 (980)
T 3ibv_A           75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLL  154 (980)
T ss_dssp             CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence            677    999999999999986     35789999999999999999999999999999999987654 45677788888


Q ss_pred             HHHhhh
Q psy9795         182 SLFKRY  187 (337)
Q Consensus       182 ~i~k~y  187 (337)
                      .+.++.
T Consensus       155 ~i~EEv  160 (980)
T 3ibv_A          155 SIGDEI  160 (980)
T ss_dssp             HHHHHH
T ss_pred             HhHHHH
Confidence            666664

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.51  E-value=6.6e-07  Score=97.91  Aligned_cols=135  Identities=14%  Similarity=0.104  Sum_probs=108.8

Q ss_pred             hcccCCCCChhhhHHHHHHHHHHHhCC----------ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCC
Q psy9795          40 VPNHDKNIQLESRSPTENFLESVETNQ----------NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD  109 (337)
Q Consensus        40 tL~~~~spD~~~Rk~AE~~L~~~~~~p----------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~  109 (337)
                      .|....|||++.|++|++.|.+.-+.+          .....|++.+.+  .+..+|.+|+..+.+.+.           
T Consensus        11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~-----------   77 (1230)
T 1u6g_C           11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVS-----------   77 (1230)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHT-----------
T ss_pred             HHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH-----------
Confidence            345566899999999999998765443          245556666653  478999999999988764           


Q ss_pred             CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC---------CChHHHHHHHHhhC-CCCHHHHHHHHHH
Q psy9795         110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD---------KWPSLITDMVAKFG-TGDFHIINGVLHT  179 (337)
Q Consensus       110 ~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~---------~WPeLl~~L~~~l~-s~d~~~~~~aL~~  179 (337)
                      .++++....|+..++..+.+.+..+|...+.+++.|+..-.|.         .|++++|.+.+.++ +++...+.+++.+
T Consensus        78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~  157 (1230)
T 1u6g_C           78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI  157 (1230)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence            2456778899999999998888889999999999999876665         49999999999998 5788899999999


Q ss_pred             HHHHHhhh
Q psy9795         180 AHSLFKRY  187 (337)
Q Consensus       180 L~~i~k~y  187 (337)
                      +.++++.+
T Consensus       158 l~~~~~~~  165 (1230)
T 1u6g_C          158 MADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.64  E-value=0.059  Score=56.37  Aligned_cols=150  Identities=11%  Similarity=0.006  Sum_probs=102.3

Q ss_pred             HhhhccchhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhC-----C-C----hHHHHHHHHHhCCCChHHHHHHHHH
Q psy9795          23 LEDMCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETN-----Q-N----YPLLILTLVERADVDMTIRIAGAVA   92 (337)
Q Consensus        23 ~~~~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~-----p-g----f~~~Ll~i~~~~~~~~~iRq~AaI~   92 (337)
                      |+.... +.+|...+...+....+.|..+|..|--.|+..-+.     + +    .-..|++.+.+  .+..+|..++..
T Consensus        37 L~~~~~-~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~--~~~~vr~~~a~~  113 (852)
T 4fdd_A           37 LEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD--SSPLIRATVGIL  113 (852)
T ss_dssp             HHHHTT-SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC--SSHHHHHHHHHH
T ss_pred             HHHHHh-CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            444433 456666666677665678899999999988864321     1 1    22334444433  367999999998


Q ss_pred             HhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC--------CCChHHHHHHHHh
Q psy9795          93 FKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP--------DKWPSLITDMVAK  164 (337)
Q Consensus        93 LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP--------~~WPeLl~~L~~~  164 (337)
                      +...++..|..      ..+     .+-..|++.+.+.+..+|.....++..|+..--+        ..++.+++.+++.
T Consensus       114 i~~ia~~~~~~------~wp-----~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~  182 (852)
T 4fdd_A          114 ITTIASKGELQ------NWP-----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF  182 (852)
T ss_dssp             HHHHHHHTTTT------TCT-----THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTT
T ss_pred             HHHHHHhcCcc------ccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHH
Confidence            88887765431      111     2455667777776778888888888888754211        2378899999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHhh
Q psy9795         165 FGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       165 l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +++++...+..|+.+|..+++.
T Consensus       183 l~~~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          183 FKHSSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHTTTTT
T ss_pred             hcCCCHHHHHHHHHHHHHHHhc
Confidence            9988888889999999877653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.63  E-value=0.02  Score=56.33  Aligned_cols=129  Identities=9%  Similarity=0.034  Sum_probs=92.6

Q ss_pred             CCChhhhHHHHHHHHHHHhC-C------ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETN-Q------NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREA  118 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~-p------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~  118 (337)
                      ++|..+|+.|...|..+... |      .+...+..+..+  .+..+|..|+..+.....           .+++..+..
T Consensus        98 ~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~~R~~a~~~l~~~~~-----------~~~~~~~~~  164 (588)
T 1b3u_A           98 VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG--DWFTSRTSACGLFSVCYP-----------RVSSAVKAE  164 (588)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC--SSHHHHHHHGGGHHHHTT-----------TSCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHH-----------hcCHHHHHH
Confidence            56778898888888876553 2      122333333322  367888888877766532           344566777


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC-CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         119 IKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       119 IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~-~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      +...+...+.+.+..||...+.++..++..--++ .+++++|.+...+++++......++.+|..+++..
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  234 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence            7777777777778899999999999998763222 35889999999999888888888899988887653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.58  E-value=0.028  Score=47.89  Aligned_cols=136  Identities=11%  Similarity=0.085  Sum_probs=100.8

Q ss_pred             HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCc
Q psy9795          33 FFCSTQGVPNHDKNIQLESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWP  102 (337)
Q Consensus        33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~  102 (337)
                      ....+...|.   |+|+.+|..|=..|..+...          .|.+..|++++.++  +..+|..|+-.|.|.....  
T Consensus        13 ~~~~l~~LL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~--   85 (210)
T 4db6_A           13 ELPQMVQQLN---SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG--   85 (210)
T ss_dssp             CHHHHHHHTT---CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC--
T ss_pred             hhHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCC--
Confidence            3445555564   56788999998888887642          26778888888764  6899999999999986321  


Q ss_pred             ccCCCCCCCCHHHHHHHH-----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC-----ChHHHHHHHHhhCCCCHHH
Q psy9795         103 LVEDEPDKIHASDREAIK-----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-----WPSLITDMVAKFGTGDFHI  172 (337)
Q Consensus       103 ~~~~~~~~i~~e~K~~IK-----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~-----WPeLl~~L~~~l~s~d~~~  172 (337)
                                ++.+..+.     ..|+..|.+.+..+|...+.++..|+..+ ++.     -.+.++.|++.+++++...
T Consensus        86 ----------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v  154 (210)
T 4db6_A           86 ----------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQI  154 (210)
T ss_dssp             ----------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred             ----------cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence                      33333333     35666676677899999999999998632 111     1358899999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy9795         173 INGVLHTAHSLFKR  186 (337)
Q Consensus       173 ~~~aL~~L~~i~k~  186 (337)
                      ...++.+|..++..
T Consensus       155 ~~~a~~aL~~l~~~  168 (210)
T 4db6_A          155 LQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999985

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=96.42  E-value=0.035  Score=60.57  Aligned_cols=109  Identities=7%  Similarity=0.069  Sum_probs=85.1

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh
Q psy9795          70 LLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD  149 (337)
Q Consensus        70 ~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D  149 (337)
                      ..|++-+.+  .|..+|..|.--|.+.++....       .++++.-..+-..+++.+.+.+..+|...+.+++.++..-
T Consensus         9 ~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~-------~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~   79 (1230)
T 1u6g_C            9 SNLLEKMTS--SDKDFRFMATNDLMTELQKDSI-------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV   79 (1230)
T ss_dssp             HHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCC-------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCC--CCHhHHHHHHHHHHHHHccccc-------CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            344444333  4789999999989887765422       3444555567777889888778899999999999999765


Q ss_pred             CCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         150 FPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       150 fP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      -+..|+.+++.++..+.+++...+.++..+|..++..+
T Consensus        80 ~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l  117 (1230)
T 1u6g_C           80 KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL  117 (1230)
T ss_dssp             CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence            44678999999999998887777889999999999876

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.39  E-value=0.23  Score=43.54  Aligned_cols=130  Identities=11%  Similarity=0.087  Sum_probs=94.8

Q ss_pred             CCChhhhHHHHHHHHHHHhC-C--------ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHH
Q psy9795          46 NIQLESRSPTENFLESVETN-Q--------NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDR  116 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~-p--------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K  116 (337)
                      |.|-..|+.|=..|..+-.. |        ++...|...+.+ +.+..+|..|+..+....+. -..      .+ ...-
T Consensus        26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~-l~~------~~-~~~~   96 (242)
T 2qk2_A           26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK-DSNVVLVAMAGKCLALLAKG-LAK------RF-SNYA   96 (242)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHH-HGG------GG-HHHH
T ss_pred             cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHH-Hhh------hH-HHHH
Confidence            56779999998888765332 2        235556666642 24789999999888888753 210      12 1222


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      ..+=..|+..+.+....||...+.++..++..-   .-+.+++.+...+++.++.....++..+..++..+
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYAST---SLEAQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            344456666666667899999999999998763   24689999999999989989999999999998876

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.36  E-value=0.29  Score=45.18  Aligned_cols=129  Identities=14%  Similarity=0.125  Sum_probs=96.4

Q ss_pred             CCChhhhHHHHHHHHHHHh-C---------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET-N---------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~-~---------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      |+++.+|.+|=..|-.+.+ .         .|.+..|++++.+. .+..+|-.|+-.|-|.++.+=           +..
T Consensus        93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~-----------~~~  160 (296)
T 1xqr_A           93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQE-----------AGL  160 (296)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCH-----------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCc-----------HHH
Confidence            6788999999888866543 2         37888999998863 367899999988988875431           111


Q ss_pred             HHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC-C----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         116 REAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-W----PSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       116 K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~-W----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +..+.    ..|+.+|.+.+..++...+.+|+.++..+ |+. +    .+.++.|+.++.++|...+..++.+|..+++.
T Consensus       161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            12222    25566666677899999999999998762 321 1    25889999999999999999999999999987


Q ss_pred             h
Q psy9795         187 Y  187 (337)
Q Consensus       187 y  187 (337)
                      .
T Consensus       240 ~  240 (296)
T 1xqr_A          240 F  240 (296)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.35  E-value=0.032  Score=56.32  Aligned_cols=127  Identities=7%  Similarity=0.049  Sum_probs=87.2

Q ss_pred             CCCChhhhHHHHHHHHHHHh-CCChHHHHHHHHHh--CCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHH
Q psy9795          45 KNIQLESRSPTENFLESVET-NQNYPLLILTLVER--ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKG  121 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~-~pgf~~~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~  121 (337)
                      .|+|...|+.+-..+..+.+ .|+........+.+  .+.++.+|..|.-.+=+..              +++--..+-.
T Consensus        59 ~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------------~~~~~~~l~~  124 (591)
T 2vgl_B           59 QTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--------------VDKITEYLCE  124 (591)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--------------SGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--------------hHHHHHHHHH
Confidence            34556666666666665444 45543333333321  1234566666654443221              2233345556


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         122 LILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP--SLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       122 ~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP--eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .+..++.+.++.||+..+.++..|++. .|+.++  ++++.+.++++++|+..+.+|+.+|.+++++
T Consensus       125 ~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          125 PLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            677788778899999999999999995 499888  5999999999988999999999999999886

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.34  E-value=0.53  Score=48.41  Aligned_cols=141  Identities=9%  Similarity=0.051  Sum_probs=97.2

Q ss_pred             cccCCCCChhhhHHHHHHHHHHHhC-------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCH
Q psy9795          41 PNHDKNIQLESRSPTENFLESVETN-------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHA  113 (337)
Q Consensus        41 L~~~~spD~~~Rk~AE~~L~~~~~~-------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~  113 (337)
                      +..-.++++.+|+++-..|..+-..       |++...|++.+.++ .+..+|..|...++...+. +...    ..+-.
T Consensus       101 l~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~~~~~r~~al~~l~~l~~~-~~~~----~~~~~  174 (861)
T 2bpt_A          101 LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-QPENVKRASLLALGYMCES-ADPQ----SQALV  174 (861)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHT-SSTT----SSTTG
T ss_pred             HHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHc-CChh----hhHHH
Confidence            3333456788999998888775432       34555566655442 2678999998888777654 4311    00113


Q ss_pred             HHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHh---hhCC--CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         114 SDREAIKGLILHLMLTS--PEAIQKQLSDATAIIGK---SDFP--DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       114 e~K~~IK~~Ll~~L~~~--~~~Ir~ql~~~i~~Ia~---~DfP--~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .....+-..++..+.+.  +..||.....++..++.   ..+.  ..|+.+++.+.+.+++++......++.+|..+++.
T Consensus       175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~  254 (861)
T 2bpt_A          175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK  254 (861)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            34556666777777775  67899999888887643   2222  13678999999999888999999999999999998


Q ss_pred             h
Q psy9795         187 Y  187 (337)
Q Consensus       187 y  187 (337)
                      |
T Consensus       255 ~  255 (861)
T 2bpt_A          255 Y  255 (861)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.28  E-value=0.083  Score=46.49  Aligned_cols=143  Identities=10%  Similarity=0.053  Sum_probs=101.1

Q ss_pred             hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--CCChHH---HHHHHHHh--CCCChHHHHHHHHHHhccccccCc
Q psy9795          30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVET--NQNYPL---LILTLVER--ADVDMTIRIAGAVAFKNYVKRNWP  102 (337)
Q Consensus        30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~pgf~~---~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~  102 (337)
                      ..++...+...+..  ++|..+|+.|=..|..+..  .+.|..   .++..+..  .+....+|..|...+++.+...  
T Consensus        54 ~~~i~~~L~~~l~k--d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--  129 (242)
T 2qk2_A           54 YGALVSALKKVITK--DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--  129 (242)
T ss_dssp             CHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--
Confidence            44555566555631  3577899999888887654  233322   22222221  1346899999999999987632  


Q ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh-----CCCCChHHHHHHHHhhCCCCHHHHHHHH
Q psy9795         103 LVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD-----FPDKWPSLITDMVAKFGTGDFHIINGVL  177 (337)
Q Consensus       103 ~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D-----fP~~WPeLl~~L~~~l~s~d~~~~~~aL  177 (337)
                             .+     ..+=..++..+.+.+..+|......|..++..-     +...++.++|.+...++..+...+..|.
T Consensus       130 -------~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~  197 (242)
T 2qk2_A          130 -------SL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSA  197 (242)
T ss_dssp             -------CH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             -------CH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence                   11     234466777777777899999999999976542     2246899999999999989999999999


Q ss_pred             HHHHHHHhhhh
Q psy9795         178 HTAHSLFKRYR  188 (337)
Q Consensus       178 ~~L~~i~k~yr  188 (337)
                      .++..+++...
T Consensus       198 ~~l~~l~~~vg  208 (242)
T 2qk2_A          198 EALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcC
Confidence            99999998763

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.83  Score=40.71  Aligned_cols=136  Identities=10%  Similarity=0.045  Sum_probs=93.1

Q ss_pred             CCCChhhhHHHHHHHHH-H-HhCC-------C---hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795          45 KNIQLESRSPTENFLES-V-ETNQ-------N---YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH  112 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~-~-~~~p-------g---f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~  112 (337)
                      .|++-..|++|-..|.. + ++.|       +   ++..|...+.+ ..+..+|..|+-.+....+.- ..     ..+.
T Consensus        26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l-~~-----~~f~   98 (249)
T 2qk1_A           26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKL-KT-----PGFS   98 (249)
T ss_dssp             TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHH-CT-----TTSC
T ss_pred             hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhc-cc-----cccc
Confidence            36678999999988877 5 4422       2   34455556544 346788999988887776321 10     0222


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CC---ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DK---WPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~---WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      ..--..+=..+++.+.+....|+.....++..|+.+--| ..   =+.+++.|+..+++.++.....++.++..+++..
T Consensus        99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A           99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            111122333555555555678999999999999986433 11   4589999999999999999999999999999875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=95.91  E-value=0.062  Score=52.73  Aligned_cols=128  Identities=8%  Similarity=-0.037  Sum_probs=75.2

Q ss_pred             CCChhhhHHHHHHHHHHHh---CCChHHHHHHHHHh--CCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVET---NQNYPLLILTLVER--ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK  120 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~---~pgf~~~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK  120 (337)
                      +++.++|+.+-..|..+..   .+.+...++.++..  .+.+..+|..|+-.+++.....           ++   +.++
T Consensus        59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~-----------~~---~~~~  124 (588)
T 1b3u_A           59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH-----------SP---SDLE  124 (588)
T ss_dssp             CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS-----------CH---HHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHC-----------CH---HHHH
Confidence            4555666666655554322   12232333322210  1124566666666666554321           11   1233


Q ss_pred             HHHHHHH----ccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         121 GLILHLM----LTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       121 ~~Ll~~L----~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      +.+++.+    .+.+..+|...+.++..++.+--+..++++++.+.+.+++++...+..++.+|..+++..
T Consensus       125 ~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~  195 (588)
T 1b3u_A          125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL  195 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            3333333    233456787778888877755323468899999999998888888899999999998764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=95.80  E-value=0.045  Score=56.65  Aligned_cols=91  Identities=7%  Similarity=0.047  Sum_probs=70.2

Q ss_pred             CChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHhhh-------CC
Q psy9795          81 VDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTS--PEAIQKQLSDATAIIGKSD-------FP  151 (337)
Q Consensus        81 ~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~--~~~Ir~ql~~~i~~Ia~~D-------fP  151 (337)
                      .+..+|+.|..+||+     |.          ++++..+...|++.+.+.  +..+|...+.++......+       ++
T Consensus        13 ~d~~~r~~A~~~L~~-----~~----------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (876)
T 1qgr_A           13 PDRLELEAAQKFLER-----AA----------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (876)
T ss_dssp             SCHHHHHHHHHHHHH-----HH----------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH-----HH----------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence            478999999999988     32          234567888999999874  4688998899999877544       34


Q ss_pred             CCChHHHHH--------HHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         152 DKWPSLITD--------MVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       152 ~~WPeLl~~--------L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      ..|+.+.+.        +++.+.+++... ..+..++..+++..
T Consensus        78 ~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~  120 (876)
T 1qgr_A           78 QRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAE  120 (876)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhh
Confidence            578877666        888887776666 88999999998863

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=95.66  E-value=0.23  Score=41.92  Aligned_cols=46  Identities=15%  Similarity=0.103  Sum_probs=21.9

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHh
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFK   94 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LK   94 (337)
                      ++|+.+|..|=..|..+.. ++....|++.+.++  +..+|..|+-.|-
T Consensus        25 ~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~~--~~~vr~~a~~~L~   70 (201)
T 3ltj_A           25 DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE--DAWVRRAAADALG   70 (201)
T ss_dssp             CSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS--SHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence            3445555555555554432 23444455544322  4455555554443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=95.56  E-value=0.23  Score=42.20  Aligned_cols=120  Identities=9%  Similarity=0.045  Sum_probs=88.0

Q ss_pred             HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795          33 FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH  112 (337)
Q Consensus        33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~  112 (337)
                      ....+...|.   ++|+.+|..|=..|..+.. ++....|++.+.++  +..+|..|+-.|.+.-.              
T Consensus        20 ~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~--------------   79 (211)
T 3ltm_A           20 KVEMYIKNLQ---DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE--DAWVRRAAADALGQIGD--------------   79 (211)
T ss_dssp             GHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC--------------
Confidence            3334434454   6788999999999988754 56788888887753  78999999988866521              


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      +    ..-..|+..+.+.+..+|...+.++..+..       ++.++.|...+.++|......++.+|..+
T Consensus        80 ~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 E----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            0    122455667777778899888888887743       56788888888888888888888888876

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=95.31  E-value=0.48  Score=40.14  Aligned_cols=110  Identities=10%  Similarity=0.062  Sum_probs=86.5

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      ++|+.+|..|=..|..+. .++....|...+.++  +..+|..|+-.|.+.-.              +    .....|+.
T Consensus        61 ~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~--------------~----~~~~~L~~  119 (211)
T 3ltm_A           61 DEDAWVRRAAADALGQIG-DERAVEPLIKALKDE--DGWVRQSAAVALGQIGD--------------E----RAVEPLIK  119 (211)
T ss_dssp             CSCHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC--------------G----GGHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc--------------H----HHHHHHHH
Confidence            568899999999998875 466888888887653  68999999988876521              1    12345667


Q ss_pred             HHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         126 LMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       126 ~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      .+.+.+..||...+.++..+.       -++.++.|...++++|......+..+|..+
T Consensus       120 ~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A          120 ALKDEDWFVRIAAAFALGEIG-------DERAVEPLIKALKDEDGWVRQSAADALGEI  170 (211)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            777777899999999998884       356889999999888888888888888876

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.26  E-value=0.25  Score=42.58  Aligned_cols=126  Identities=13%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             CCChhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      ++|+++|..|-..|..+...          .|.+..|++++.+.  +..+|..|+-.|.|.....            ++.
T Consensus        13 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~------------~~~   78 (252)
T 4hxt_A           13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP------------DEA   78 (252)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCC------------hHH
Confidence            45678888888888776543          37888888888764  5899999999999986431            222


Q ss_pred             HHHH-----HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCC-----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 REAI-----KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKW-----PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 K~~I-----K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~W-----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      +..+     =..++..+.+.+..+|...+.++..++..+ |+.-     .+.++.|++.+.+++......++.+|..++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            2222     234555666667899999999999999532 1111     2578999999999999999999999999987


Q ss_pred             h
Q psy9795         186 R  186 (337)
Q Consensus       186 ~  186 (337)
                      .
T Consensus       158 ~  158 (252)
T 4hxt_A          158 G  158 (252)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=95.18  E-value=0.24  Score=41.75  Aligned_cols=110  Identities=10%  Similarity=0.079  Sum_probs=86.5

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      ++|+.+|..|-..|..+. .++....|...+.++  +..+|..|+-.|.+.-.              +    .....|+.
T Consensus        56 ~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~--------------~----~~~~~L~~  114 (201)
T 3ltj_A           56 DEDAWVRRAAADALGQIG-DERAVEPLIKALKDE--DGWVRQSAAVALGQIGD--------------E----RAVEPLIK  114 (201)
T ss_dssp             CSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC--------------G----GGHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc--------------H----HHHHHHHH
Confidence            678899999999998774 467888888887653  78999999988876421              1    12345667


Q ss_pred             HHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         126 LMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       126 ~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      .+.+.+..||...+.++..+..       ++.++.|...+.+++......++.+|..+
T Consensus       115 ~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          115 ALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            7777778999999999988853       57888999999988888888999988877

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=94.95  E-value=0.2  Score=47.37  Aligned_cols=95  Identities=6%  Similarity=-0.078  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh----CCCCChHHH
Q psy9795          83 MTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD----FPDKWPSLI  158 (337)
Q Consensus        83 ~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D----fP~~WPeLl  158 (337)
                      ..+|..|+-.|+...... .          +..-..+-..+.+.+.+.+..+|.....+++.|+..-    +...-++++
T Consensus       342 ~~~r~~a~~~L~~l~~~~-~----------~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~  410 (462)
T 1ibr_B          342 WNPCKAAGVCLMLLATCC-E----------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM  410 (462)
T ss_dssp             CSHHHHHHHHHHHHHHHT-T----------TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHH
T ss_pred             chHHHHHHHHHHHHHHhc-c----------HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            478888888888776542 1          1222344455556666667889999999999998632    223568999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795         159 TDMVAKFGTGDFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       159 ~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr  188 (337)
                      +.++..++++++..+..|..+|..+++...
T Consensus       411 ~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          411 PTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.82  E-value=0.064  Score=50.88  Aligned_cols=110  Identities=4%  Similarity=0.006  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH-HHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Q psy9795          69 PLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE-AIKGLILHLMLTS-PEAIQKQLSDATAIIG  146 (337)
Q Consensus        69 ~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~-~IK~~Ll~~L~~~-~~~Ir~ql~~~i~~Ia  146 (337)
                      +..|++.+.++  +..+|..|+..|++.+...+..      .+..-.+. .+-..|++.|.+. +..+|...+.++..|+
T Consensus        22 l~~l~~~l~s~--~~~~r~~A~~~L~~l~~~~~~~------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~   93 (450)
T 2jdq_A           22 TSDMIEMIFSK--SPEQQLSATQKFRKLLSKEPNP------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIA   93 (450)
T ss_dssp             CHHHHHHHHSS--CHHHHHHHHHHHHHHHHSSSSC------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCC------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence            55667776553  6899999999999988765531      22111122 4555677777776 6789999999999999


Q ss_pred             hhhC--CCC--ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         147 KSDF--PDK--WPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       147 ~~Df--P~~--WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ..+-  ...  ..+.++.+++.+++++....+.++.+|..++..
T Consensus        94 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~  137 (450)
T 2jdq_A           94 SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD  137 (450)
T ss_dssp             SSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence            7421  111  257999999999999999999999999999875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=94.81  E-value=0.31  Score=43.41  Aligned_cols=123  Identities=10%  Similarity=0.077  Sum_probs=86.2

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      ++|+.+|..|-..|..+. .++....|+..+.++  +..+|..|+-.|-+.-.   .  +       +.. ..+-..+..
T Consensus        34 ~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~---~--~-------~~~-~~l~~~L~~   97 (280)
T 1oyz_A           34 DHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKI---C--K-------KCE-DNVFNILNN   97 (280)
T ss_dssp             CSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCC---C--T-------TTH-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcc---c--c-------ccc-hHHHHHHHH
Confidence            568899999999998775 466788888887764  68999999988865421   0  0       111 112222332


Q ss_pred             -HHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         126 -LMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       126 -~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                       ++.+.+..+|...+.++..+...+ |...+++++.+...++++|......+..+|..+..
T Consensus        98 ~~~~d~~~~vr~~a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           98 MALNDKSACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence             233456789999999999998654 33457899999999999888888888888876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=94.73  E-value=0.31  Score=43.36  Aligned_cols=119  Identities=9%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             CCCChhhhHHHHHHHHHHHhCCChHHHHHHHH----HhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795          45 KNIQLESRSPTENFLESVETNQNYPLLILTLV----ERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK  120 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~----~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK  120 (337)
                      .++|+.+|..|-..|.++...+.....++.++    .+ +.+..+|..|+-.|-+.-...            ......+-
T Consensus        64 ~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~-d~~~~vr~~a~~aL~~l~~~~------------~~~~~~~~  130 (280)
T 1oyz_A           64 SDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN-DKSACVRATAIESTAQRCKKN------------PIYSPKIV  130 (280)
T ss_dssp             TCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHC------------GGGHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccC------------CcccHHHH
Confidence            36788999999999988765555444444433    23 347899999998887754221            00112344


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy9795         121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSL  183 (337)
Q Consensus       121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i  183 (337)
                      ..|+..+.+.+..+|...+.++..+..       |+.++.|...+++++......+...|..+
T Consensus       131 ~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  186 (280)
T 1oyz_A          131 EQSQITAFDKSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININ  186 (280)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence            567777777788999999988887754       34788888888888888888888888776

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=94.55  E-value=0.11  Score=44.83  Aligned_cols=129  Identities=11%  Similarity=0.098  Sum_probs=96.5

Q ss_pred             CCChhhhHHHHHHHHHHHh-C---------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET-N---------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~-~---------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      ++|..+|..|=..|..+.. .         .|.+..|++++.+.  +..+|..|+-.|.|.....            ++.
T Consensus        97 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~------------~~~  162 (252)
T 4hxt_A           97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP------------DEA  162 (252)
T ss_dssp             CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC------------HHH
Confidence            5678999999998888773 2         36788888888764  5889999999999987531            222


Q ss_pred             -HHH----HHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC-----ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 -REA----IKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-----WPSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 -K~~----IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~-----WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                       +..    +=..|++.+.+.+..+|...+.++..++..+ |+.     =.+.++.+++.+++++......++.+|..++.
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence             122    2345666666667899999999999998632 111     13578999999999999999999999999998


Q ss_pred             hhhh
Q psy9795         186 RYRH  189 (337)
Q Consensus       186 ~yr~  189 (337)
                      ....
T Consensus       242 ~~~~  245 (252)
T 4hxt_A          242 GGWL  245 (252)
T ss_dssp             TCBC
T ss_pred             CCCc
Confidence            7543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=94.47  E-value=0.17  Score=42.84  Aligned_cols=126  Identities=11%  Similarity=0.039  Sum_probs=91.4

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      ++|+.+|..|=..|..+..          ..|.+..|+.++.+.  +..+|..|+-.|.|.....            ++.
T Consensus        65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~------------~~~  130 (210)
T 4db6_A           65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG------------NEQ  130 (210)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCC------------HHH
Confidence            4578999999888887653          246788888888764  6899999999999987431            222


Q ss_pred             H-HHH----HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC----ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 R-EAI----KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK----WPSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 K-~~I----K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~----WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      + ..+    =..|++.+.+.+..++...+.++..++...-+..    =.+.++.|++.+++++......++.+|..++.
T Consensus       131 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            2 222    2345566666678899999999999987521110    12578899999998888888999999888754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.35  E-value=0.1  Score=45.46  Aligned_cols=126  Identities=11%  Similarity=0.114  Sum_probs=93.1

Q ss_pred             CCChhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      ++++++|..|=..|..+...          .|.+..|++++.++  +..+|..|+-.|.|.....            +..
T Consensus        65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~------------~~~  130 (252)
T 4db8_A           65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG------------NEQ  130 (252)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC------------chH
Confidence            45678999998888877652          56788888888774  6899999999999985321            222


Q ss_pred             -HHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCC-----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 -REAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKW-----PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 -K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~W-----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                       +..++    ..|++.|.+.+..+|...+.++..++..+ |+.-     .+.++.|++.+.+++......++.+|..++.
T Consensus       131 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  209 (252)
T 4db8_A          131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  209 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence             22233    34555555567889999999999998643 1111     3578999999999999999999999999986


Q ss_pred             h
Q psy9795         186 R  186 (337)
Q Consensus       186 ~  186 (337)
                      .
T Consensus       210 ~  210 (252)
T 4db8_A          210 G  210 (252)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=94.12  E-value=1.2  Score=41.87  Aligned_cols=125  Identities=10%  Similarity=0.058  Sum_probs=94.6

Q ss_pred             ChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH
Q psy9795          48 QLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE  117 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~  117 (337)
                      |+.+|..|-..|..+..          ..|....|++++.++  +..+|..|+-.|.|.....            ++.|.
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~------------~~~~~  143 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDS------------TMCRD  143 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTC------------HHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCC------------HHHHH
Confidence            67889999888877654          268889999988764  7899999999999886532            22222


Q ss_pred             HH-----HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhhCCC----CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         118 AI-----KGLILHLMLT-SPEAIQKQLSDATAIIGKSDFPD----KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       118 ~I-----K~~Ll~~L~~-~~~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .+     -..++..+.+ .+..+|...+.++..++...-|.    .-.++++.|++.+.++|...+..++.+|..++..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            22     2345556654 46789999999999999765332    2368999999999999988888999999988864

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=93.37  E-value=0.36  Score=48.54  Aligned_cols=125  Identities=10%  Similarity=-0.013  Sum_probs=84.7

Q ss_pred             CCChhhhHHHHHHHHHHHh--C--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVET--N--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKG  121 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~--~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~  121 (337)
                      |+|...|+.|=..+-.+..  .  +.....+++.+.+  .+..+|.++..+++++.+..            ++.-..+-+
T Consensus        24 ~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s--~~~~~Krl~yl~l~~~~~~~------------~e~~~l~~n   89 (591)
T 2vgl_B           24 NEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT--DNLELKKLVYLYLMNYAKSQ------------PDMAIMAVN   89 (591)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSS--SCHHHHHHHHHHHHHHHHHS------------HHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcccC------------chHHHHHHH
Confidence            4566777777666654332  2  2334445555443  47899999999999876531            222222334


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         122 LILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       122 ~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .+..-+.+.++.+|...   +..++..--|+-++.+++.+.+++.++++.....|..++..+++.+
T Consensus        90 ~l~kdL~~~n~~ir~~A---L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~  152 (591)
T 2vgl_B           90 SFVKDCEDPNPLIRALA---VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN  152 (591)
T ss_dssp             HHGGGSSSSSHHHHHHH---HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHcCCCCHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC
Confidence            44445555667888544   5555555566789999999999999999999999999999999864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=93.25  E-value=0.46  Score=41.21  Aligned_cols=127  Identities=10%  Similarity=0.101  Sum_probs=90.6

Q ss_pred             CCChhhhHHHHHHHHH-HH---------hCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLES-VE---------TNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~-~~---------~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      |+|+++|..|=..|.. +.         ...|.+..|++++.+.  +..+|..|+-.|.|.....            ++.
T Consensus        23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~------------~~~   88 (252)
T 4db8_A           23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG------------NEQ   88 (252)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCC------------HHH
Confidence            3455788888887743 22         1357888898988775  4899999999999987532            222


Q ss_pred             HHHH-----HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC----CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         116 REAI-----KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD----KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       116 K~~I-----K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +..+     -..|+..|.+.+..+|...+.++..|+..+-..    .=.+.++.|++.+++++......++.+|..++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            2222     234555555667889999999999997542111    0125789999999999999999999999999975

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=93.12  E-value=1.5  Score=39.10  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=101.0

Q ss_pred             hhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHh--C-CChH-HHHHH---HH-Hh-CCCChHHHHHHHHHHhcccccc
Q psy9795          30 NGEFFCSTQGVPNHDKNIQLESRSPTENFLESVET--N-QNYP-LLILT---LV-ER-ADVDMTIRIAGAVAFKNYVKRN  100 (337)
Q Consensus        30 ~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~--~-pgf~-~~Ll~---i~-~~-~~~~~~iRq~AaI~LKN~V~~~  100 (337)
                      +.++...+...+.  .++|..+|..|=.-|.++..  . ++|. .+.-.   .+ .. .+-...||-.|.-.+.+.+..-
T Consensus        58 ~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~  135 (249)
T 2qk1_A           58 YSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY  135 (249)
T ss_dssp             CHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence            4566666666663  23456788888888877554  4 5554 44322   22 21 2334788888888888887753


Q ss_pred             CcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC---C----CC-hHHHHHHHHhhCCCCHHH
Q psy9795         101 WPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP---D----KW-PSLITDMVAKFGTGDFHI  172 (337)
Q Consensus       101 W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP---~----~W-PeLl~~L~~~l~s~d~~~  172 (337)
                      =.  ......+     ..+=+.|+..|.+....+|.+...+|..++..- +   .    .- |+++|.+.+++..++...
T Consensus       136 ~~--~~~~~~l-----~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~-~~~~~~l~~~l~~~iip~l~~~l~D~~~~V  207 (249)
T 2qk1_A          136 DP--LASSGRN-----EDMLKDILEHMKHKTPQIRMECTQLFNASMKEE-KDGYSTLQRYLKDEVVPIVIQIVNDTQPAI  207 (249)
T ss_dssp             CT--TCTTCTT-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-CSCSHHHHHHHTTTHHHHHHHHHTCSSHHH
T ss_pred             cc--cccCCcH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc-CCcchhHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            10  0000012     346667888888777899999999999998652 2   1    35 899999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy9795         173 INGVLHTAHSLFKRY  187 (337)
Q Consensus       173 ~~~aL~~L~~i~k~y  187 (337)
                      +..|..|+..+++..
T Consensus       208 R~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          208 RTIGFESFAILIKIF  222 (249)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=92.56  E-value=1.9  Score=43.45  Aligned_cols=134  Identities=9%  Similarity=0.019  Sum_probs=94.3

Q ss_pred             HHHHhhcccCCCCChhhhHHHHHHHHHHHhCC----------ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCccc
Q psy9795          35 CSTQGVPNHDKNIQLESRSPTENFLESVETNQ----------NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLV  104 (337)
Q Consensus        35 ~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~p----------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~  104 (337)
                      ..+...|.   ++|+.+|..|-..|..+....          |.+..|++.+.+. .+..+|..|+-.|++.....    
T Consensus        17 ~~Lv~lL~---~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~----   88 (644)
T 2z6h_A           17 PELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHR----   88 (644)
T ss_dssp             HHHHHHHT---CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSH----
T ss_pred             HHHHHHHc---CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCh----
Confidence            34444554   568899999999998876533          5677788887763 37889999998998765431    


Q ss_pred             CCCCCCCCHHHHHHH-----HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC----ChHHHHHHHHhhCCCCHHHHHH
Q psy9795         105 EDEPDKIHASDREAI-----KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK----WPSLITDMVAKFGTGDFHIING  175 (337)
Q Consensus       105 ~~~~~~i~~e~K~~I-----K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~----WPeLl~~L~~~l~s~d~~~~~~  175 (337)
                               +.|..+     -..|+..|.+.+..++...+.++..|+..+-+..    =.+.++.|++.+++++......
T Consensus        89 ---------~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~  159 (644)
T 2z6h_A           89 ---------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  159 (644)
T ss_dssp             ---------HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred             ---------hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence                     122222     2346666666678999999999999998752211    1468899999999888776677


Q ss_pred             HHHHHHHHHh
Q psy9795         176 VLHTAHSLFK  185 (337)
Q Consensus       176 aL~~L~~i~k  185 (337)
                      ++.+|..++.
T Consensus       160 a~~~L~~La~  169 (644)
T 2z6h_A          160 TTDCLQILAY  169 (644)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            7778877774

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=92.52  E-value=4.8  Score=39.42  Aligned_cols=128  Identities=12%  Similarity=0.101  Sum_probs=90.5

Q ss_pred             CCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHH
Q psy9795          45 KNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS  114 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e  114 (337)
                      .++|++++..|=..|..+..          ..|....|.+++.+.  +..++..|+-.+.|.+...            ++
T Consensus       261 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~------------~~  326 (529)
T 3tpo_A          261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGT------------DE  326 (529)
T ss_dssp             TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSC------------HH
T ss_pred             cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccc------------hH
Confidence            35677888887766655432          457788888888764  6889999999999986431            22


Q ss_pred             HHHHHHH-----HHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC--C--hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         115 DREAIKG-----LILHLMLTSPEAIQKQLSDATAIIGKSDFPDK--W--PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       115 ~K~~IK~-----~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~--W--PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      .+..+-+     .|+..|.+.+..+|...+.+++.|+...-...  .  .++++.++..+.+++......|..+|..++.
T Consensus       327 ~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          327 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            2322222     35556666678899999999999986421100  0  2588999999999999888889999988876


Q ss_pred             h
Q psy9795         186 R  186 (337)
Q Consensus       186 ~  186 (337)
                      .
T Consensus       407 ~  407 (529)
T 3tpo_A          407 G  407 (529)
T ss_dssp             H
T ss_pred             C
Confidence            4

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=92.43  E-value=0.59  Score=45.77  Aligned_cols=131  Identities=11%  Similarity=0.028  Sum_probs=95.9

Q ss_pred             CCChhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      ++++.+|.+|=..|..+...          .|.+..|++++.+  .+..+|..|+-.|.|.....-.       ......
T Consensus       184 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~-------~~~~~~  254 (530)
T 1wa5_B          184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKP-------QPDWSV  254 (530)
T ss_dssp             HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSS-------CCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCC-------CCcHHH
Confidence            36789999998888877543          4778888888876  4789999999999998754211       122222


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC-----ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         116 REAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-----WPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       116 K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~-----WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ...+=..|+..+.+.+..++...+.++..++... |+.     ..++++.|++++.+++......++.+|..++..
T Consensus       255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~  329 (530)
T 1wa5_B          255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  329 (530)
T ss_dssp             HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence            2334456667776677899999999999998542 111     136789999999988888889999999998864

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=92.25  E-value=0.62  Score=45.49  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=96.0

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      +++..+|..|=..|..+..          ..|.+..|+.++.+. .+..+|..|+-.+.|.....           ++..
T Consensus       297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~~L~nl~~~~-----------~~~~  364 (528)
T 4b8j_A          297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACWTISNITAGN-----------KDQI  364 (528)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHTSC-----------HHHH
T ss_pred             CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHHHHHHHHCCC-----------HHHH
Confidence            4467888888888766543          367788899998764 26899999999999987421           0122


Q ss_pred             HHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh-----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         116 REAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP-----SLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       116 K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP-----eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +..+.    ..|+..|.+.+..+|...+.++..++...-|+.-.     +.++.|+.++.++|...+..++.+|..+++.
T Consensus       365 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (528)
T 4b8j_A          365 QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV  444 (528)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            22233    34566666677899999999999999873232222     4688899999999999999999999999987


Q ss_pred             hh
Q psy9795         187 YR  188 (337)
Q Consensus       187 yr  188 (337)
                      ..
T Consensus       445 ~~  446 (528)
T 4b8j_A          445 GE  446 (528)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=92.10  E-value=2.5  Score=41.09  Aligned_cols=123  Identities=8%  Similarity=0.082  Sum_probs=91.7

Q ss_pred             hhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHH
Q psy9795          49 LESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREA  118 (337)
Q Consensus        49 ~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~  118 (337)
                      +.+|.+|=..|..+...          .|.+..|+.++.++  +..+|..|+-.|.|.....            ++.|..
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~------------~~~~~~  197 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDS------------PKCRDL  197 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTC------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCC------------hhhHHH
Confidence            78888888888776553          36788888888763  6899999999999986321            233333


Q ss_pred             HHH-----HHHHHHc-cCCHHHHHHHHHHHHHHHhhhCCC-C---ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         119 IKG-----LILHLML-TSPEAIQKQLSDATAIIGKSDFPD-K---WPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       119 IK~-----~Ll~~L~-~~~~~Ir~ql~~~i~~Ia~~DfP~-~---WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +.+     .|+..|. ..+..++...+.+++.++... |. .   -.+.++.|+..+.++|...+..++.+|..++..
T Consensus       198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            332     3455552 345789999999999999875 42 2   256899999999999999999999999988854

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=91.98  E-value=0.65  Score=45.49  Aligned_cols=129  Identities=14%  Similarity=0.106  Sum_probs=93.9

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      ++|..+|..|=..|..+..          ..|.+..|+.++.+.  +..+|..|+-.+.|.....-           +..
T Consensus       310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~-----------~~~  376 (530)
T 1wa5_B          310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNT-----------EQI  376 (530)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCH-----------HHH
T ss_pred             CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCH-----------HHH
Confidence            4677889888777766643          257888888888764  68999999999999864211           112


Q ss_pred             HHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCC--CCC-----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795         116 REAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFP--DKW-----PSLITDMVAKFGTGDFHIINGVLHTAHSLF  184 (337)
Q Consensus       116 K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP--~~W-----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~  184 (337)
                      +..+.    ..|+..|.+.+..+|...+.++..++...-|  +.-     .+.++.|+..+.++|...+..++.+|..++
T Consensus       377 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~  456 (530)
T 1wa5_B          377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL  456 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            22222    3456666666789999999999999876322  110     237888999999889999999999999999


Q ss_pred             hhh
Q psy9795         185 KRY  187 (337)
Q Consensus       185 k~y  187 (337)
                      +..
T Consensus       457 ~~~  459 (530)
T 1wa5_B          457 KMG  459 (530)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=91.91  E-value=2.3  Score=40.92  Aligned_cols=134  Identities=8%  Similarity=-0.002  Sum_probs=93.9

Q ss_pred             HHHHhhcccCCCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCccc
Q psy9795          35 CSTQGVPNHDKNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLV  104 (337)
Q Consensus        35 ~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~  104 (337)
                      ..+...|.   ++|+.+|..|-..|..+..          .+|....|++.+.+. .+..+|..|+-.|++....     
T Consensus        20 ~~Lv~lL~---~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~-----   90 (529)
T 1jdh_A           20 PELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHH-----   90 (529)
T ss_dssp             HHHHHHHT---CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS-----
T ss_pred             HHHHHHhC---CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcC-----
Confidence            34444554   5688999999988877643          346788888888764 3788999999999986432     


Q ss_pred             CCCCCCCCHHHHHHHH-----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC-C---ChHHHHHHHHhhCCCCHHHHHH
Q psy9795         105 EDEPDKIHASDREAIK-----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-K---WPSLITDMVAKFGTGDFHIING  175 (337)
Q Consensus       105 ~~~~~~i~~e~K~~IK-----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~-~---WPeLl~~L~~~l~s~d~~~~~~  175 (337)
                              ++.|..+.     ..|++.+.+.+..++...+.++..++..+-.. .   =.+.++.+++.+.+++......
T Consensus        91 --------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~  162 (529)
T 1jdh_A           91 --------REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI  162 (529)
T ss_dssp             --------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred             --------chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence                    22233322     25566666667889999999999999874211 0   1467899999999888777777


Q ss_pred             HHHHHHHHHh
Q psy9795         176 VLHTAHSLFK  185 (337)
Q Consensus       176 aL~~L~~i~k  185 (337)
                      +..+|..++.
T Consensus       163 ~~~~L~~la~  172 (529)
T 1jdh_A          163 TTDCLQILAY  172 (529)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            7777776664

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=91.65  E-value=0.12  Score=41.08  Aligned_cols=118  Identities=14%  Similarity=0.046  Sum_probs=77.9

Q ss_pred             HHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795          33 FFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH  112 (337)
Q Consensus        33 ~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~  112 (337)
                      +...+...|.   ++|+.+|..|-..|..+.. +. ...|+..+.+  .+..+|..|+..|-+.-.              
T Consensus        13 ~~~~l~~~L~---~~~~~vR~~A~~~L~~~~~-~~-~~~L~~~L~d--~~~~vR~~A~~aL~~~~~--------------   71 (131)
T 1te4_A           13 GLVPRGSHMA---DENKWVRRDVSTALSRMGD-EA-FEPLLESLSN--EDWRIRGAAAWIIGNFQD--------------   71 (131)
T ss_dssp             --------CC---SSCCCSSSSCCSSTTSCSS-TT-HHHHHHGGGC--SCHHHHHHHHHHHGGGCS--------------
T ss_pred             cHHHHHHHhc---CCCHHHHHHHHHHHHHhCc-hH-HHHHHHHHcC--CCHHHHHHHHHHHHhcCC--------------
Confidence            4444444443   4677888888777765533 33 4777777765  378999999988866421              


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHS  182 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~  182 (337)
                          ...-..|+..+.+.+..||...+.++..+.       -++.++.|...++++|......+..+|..
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                123455667777778899999999998885       25688888898887777777777766643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=91.08  E-value=1  Score=45.59  Aligned_cols=69  Identities=10%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +.+-..+..++.+.++.||+..+.++..|.+.+ |+.=+++++.+..++.+.|+..+.+|+.+|.++++.
T Consensus       141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence            344556666777778899999999999999863 654456777777888888888899999999999865

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=90.97  E-value=5  Score=36.69  Aligned_cols=123  Identities=11%  Similarity=0.070  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHHHHhC---------CChHHHHHH-HHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHH-
Q psy9795          50 ESRSPTENFLESVETN---------QNYPLLILT-LVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREA-  118 (337)
Q Consensus        50 ~~Rk~AE~~L~~~~~~---------pgf~~~Ll~-i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~-  118 (337)
                      +.|..|=..|.++-.+         -|-+..|+. ++.++  +..+|..|+-.+-|.+..+            ++.|.. 
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~--~~~vr~~Aa~~Lg~ia~~n------------~~~~~~v  120 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG--AAGLRWRAAQLIGTCSQNV------------AAIQEQV  120 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTTC------------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCC------------HHHHHHH
Confidence            4455555555544322         355677777 77653  6899999999999887532            223322 


Q ss_pred             HH----HHHHHHHccC-CHHHHHHHHHHHHHHHhhhCCC--CC--hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         119 IK----GLILHLMLTS-PEAIQKQLSDATAIIGKSDFPD--KW--PSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       119 IK----~~Ll~~L~~~-~~~Ir~ql~~~i~~Ia~~DfP~--~W--PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ++    ..|+..|.+. +..+|...+.+|+.|++..=|.  ..  -+.++.|+.+++++|......+..+|..++..
T Consensus       121 v~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~  197 (296)
T 1xqr_A          121 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  197 (296)
T ss_dssp             HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            22    2455566543 5789999999999998743221  11  25788999999999999899999999999985

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=90.85  E-value=1.1  Score=46.76  Aligned_cols=132  Identities=6%  Similarity=0.010  Sum_probs=93.2

Q ss_pred             HHhhcccCCCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC
Q psy9795          37 TQGVPNHDKNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED  106 (337)
Q Consensus        37 l~~tL~~~~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~  106 (337)
                      +...|.   ++|+.+|..|-..|..+..          .+|.+..|++.+.+.. +..+|..|+-.|+|.....      
T Consensus       155 Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~------  224 (780)
T 2z6g_A          155 LTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHR------  224 (780)
T ss_dssp             HHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSH------
T ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCc------
Confidence            334454   5688999999998887764          3578889999987653 7899999999999853321      


Q ss_pred             CCCCCCHHHHHHH----HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCC-----hHHHHHHHHhhCCCCHHHHHHHH
Q psy9795         107 EPDKIHASDREAI----KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKW-----PSLITDMVAKFGTGDFHIINGVL  177 (337)
Q Consensus       107 ~~~~i~~e~K~~I----K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~W-----PeLl~~L~~~l~s~d~~~~~~aL  177 (337)
                            +..+..+    =..|++.|.+.+..+|...+.++..|+.... +..     .+.++.++..+.+++......++
T Consensus       225 ------~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~  297 (780)
T 2z6g_A          225 ------EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITT  297 (780)
T ss_dssp             ------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred             ------hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence                  1111222    2345666666678899999999999997642 211     35788999999988877677777


Q ss_pred             HHHHHHHh
Q psy9795         178 HTAHSLFK  185 (337)
Q Consensus       178 ~~L~~i~k  185 (337)
                      .+|..++.
T Consensus       298 ~aL~~La~  305 (780)
T 2z6g_A          298 DCLQILAY  305 (780)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            77776653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=90.29  E-value=1.6  Score=44.25  Aligned_cols=69  Identities=13%  Similarity=0.238  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHhhhCCCCCh--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         117 EAIKGLILHLM--LTSPEAIQKQLSDATAIIGKSDFPDKWP--SLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       117 ~~IK~~Ll~~L--~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP--eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +.+-..+..++  .+.++.||+..+.++..|.+.+ |+.=+  ++++.+..++.+.|+..+.+|+.++.+++++
T Consensus       145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            44555667777  5667899999999999999954 65444  6677778888888999999999999999875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=88.93  E-value=1.3  Score=44.86  Aligned_cols=122  Identities=7%  Similarity=0.065  Sum_probs=80.9

Q ss_pred             hhhhHHHHHHHHHHHhCCC----hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHH
Q psy9795          49 LESRSPTENFLESVETNQN----YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLIL  124 (337)
Q Consensus        49 ~~~Rk~AE~~L~~~~~~pg----f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll  124 (337)
                      ..++-+|-..+-.+...|+    ....|...+.+  .+.++|.+|.-.+...+..+-            +.-......++
T Consensus       291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~--~d~~vr~~aL~~L~~i~~~~p------------~~~~~~~~~i~  356 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLN--NDKNIRYVALTSLLKTVQTDH------------NAVQRHRSTIV  356 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC--SSTTTHHHHHHHHHHHHHHHH------------HHHGGGHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHhhCH------------HHHHHHHHHHH
Confidence            3445454444444333222    23444444444  256888888777776665421            11112344677


Q ss_pred             HHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         125 HLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       125 ~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .++.+.+..||....+++..++..   .++.++++++...+.+.|.+.+..+...+..++.+|
T Consensus       357 ~~l~d~d~~Ir~~alelL~~l~~~---~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          357 DCLKDLDVSIKRRAMELSFALVNG---NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             HGGGSSCHHHHHHHHHHHHHHCCS---SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred             HHccCCChhHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            777777888998888888888875   468889999999888888888888888888888876

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=88.59  E-value=2.4  Score=41.67  Aligned_cols=128  Identities=12%  Similarity=0.149  Sum_probs=91.0

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      +++..++..|-..|..+..          ..|.+..|..++.+.  +..+|..|+-.|-|.....            ++.
T Consensus       304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~------------~~~  369 (529)
T 3tpo_A          304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGR------------QDQ  369 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSC------------HHH
T ss_pred             CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhccc------------HHH
Confidence            4577888888777766532          246677787877653  6889999999998876431            222


Q ss_pred             HHHHH-----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCC-----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 REAIK-----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKW-----PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 K~~IK-----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~W-----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      +..+.     ..|+..+.+.+..+|...+.+|..++...-++.-     .+.++.|+.++.++|...+..+|.+|..|++
T Consensus       370 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          370 IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            22222     3455666667788999999999998865322211     1357889999999999999999999999987


Q ss_pred             hh
Q psy9795         186 RY  187 (337)
Q Consensus       186 ~y  187 (337)
                      -.
T Consensus       450 ~~  451 (529)
T 3tpo_A          450 AA  451 (529)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=88.50  E-value=22  Score=37.40  Aligned_cols=95  Identities=5%  Similarity=0.044  Sum_probs=66.1

Q ss_pred             ChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhh---------h---
Q psy9795          82 DMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKS---------D---  149 (337)
Q Consensus        82 ~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~---------D---  149 (337)
                      .+.+|..|+-.+-++..  |         ++++.-..+=..++..|.+++..||...|.++..++..         +   
T Consensus       471 ~p~vr~~a~~~lg~~~~--~---------~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~  539 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRN--Q---------LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHK  539 (960)
T ss_dssp             CHHHHHHHHHHHHHTGG--G---------SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCG
T ss_pred             CceehHHHHHHHHHHHh--h---------CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccH
Confidence            67888888877766542  3         23343344445666777666788999999999998874         1   


Q ss_pred             --CCCCChHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHhhh
Q psy9795         150 --FPDKWPSLITDMVAKFGTGD-----FHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       150 --fP~~WPeLl~~L~~~l~s~d-----~~~~~~aL~~L~~i~k~y  187 (337)
                        .....+.+++.+++.++...     ......++.++..++..+
T Consensus       540 ~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~  584 (960)
T 1wa5_C          540 EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS  584 (960)
T ss_dssp             GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence              22467899999999887641     113467888888888876

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=88.35  E-value=3.1  Score=40.70  Aligned_cols=129  Identities=12%  Similarity=0.144  Sum_probs=88.6

Q ss_pred             CCChhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      +++..++..|-..|..+...          .|....|..++.+  .+..+|..|+-.+.|.....            ++.
T Consensus       285 ~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~v~~~A~~aL~nl~a~~------------~~~  350 (510)
T 3ul1_B          285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGR------------QDQ  350 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC--SSHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC--CCHHHHHHHHHHHHHHHcCc------------HHH
Confidence            45678888887777665332          3444555555544  36789999999999886431            222


Q ss_pred             HHHHH-----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCC-----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 REAIK-----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKW-----PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 K~~IK-----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~W-----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      +..+.     ..|+..+.+.+..+|...+.+|..++...-++.-     .+.++.|++++.++|...+..+|.+|..|++
T Consensus       351 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  430 (510)
T 3ul1_B          351 IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33322     2455666667789999999999998875322111     1457889999999999999999999999998


Q ss_pred             hhh
Q psy9795         186 RYR  188 (337)
Q Consensus       186 ~yr  188 (337)
                      ..+
T Consensus       431 ~~~  433 (510)
T 3ul1_B          431 AAE  433 (510)
T ss_dssp             HHH
T ss_pred             HhH
Confidence            643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=85.54  E-value=21  Score=33.90  Aligned_cols=127  Identities=8%  Similarity=0.083  Sum_probs=86.7

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      +++..+|..+-..|..+..          ..|....|++++.+.+ +...+..|+-.++|....             ++.
T Consensus       154 ~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~-------------~~~  219 (529)
T 1jdh_A          154 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-------------SSN  219 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-------------TTH
T ss_pred             cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcC-------------ccc
Confidence            3566777777556654432          2477888889888753 556666666677777521             112


Q ss_pred             H-HHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         116 R-EAIKGLILHLML----TSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       116 K-~~IK~~Ll~~L~----~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      | ..++...++.|.    +.+..++...+.++..++...-+ ..-.+.++.+++.+.++|......+..+|..++..
T Consensus       220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            2 223334444444    44578888899999999876422 23357999999999999999999999999999774

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=85.49  E-value=36  Score=35.62  Aligned_cols=111  Identities=11%  Similarity=-0.000  Sum_probs=77.9

Q ss_pred             CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q psy9795          66 QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAII  145 (337)
Q Consensus        66 pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~I  145 (337)
                      .|.+..|.+++.+.  +..+|..|+-.+-|.+...=...    ..+ + ....+ ..|+..+.+.+..+|...+.+++.|
T Consensus       622 aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~~~~~~----~~v-~-~~g~l-~~Lv~LL~s~d~~vq~~Aa~ALanL  692 (810)
T 3now_A          622 EQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMSEDVIK----MFE-G-NNDRV-KFLALLCEDEDEETATACAGALAII  692 (810)
T ss_dssp             TTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTSHHHHH----HHH-S-SSSHH-HHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChHHHH----HHH-h-ccCcH-HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            47888898888764  56899999999999875310000    000 0 00112 2455555556688999999999999


Q ss_pred             Hhh-h-----CCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         146 GKS-D-----FPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       146 a~~-D-----fP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +.. +     ..+. ...++.|++++.++|....+.|+.++..++..
T Consensus       693 t~~s~~~~~~ii~~-~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          693 TSVSVKCCEKILAI-ASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHCHHHHHHHHTS-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             hCCCHHHHHHHHHH-cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            872 1     1222 46788999999999999999999999999873

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=84.76  E-value=10  Score=36.36  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=87.6

Q ss_pred             CChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHH
Q psy9795          47 IQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDR  116 (337)
Q Consensus        47 pD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K  116 (337)
                      +|+..+..|-..|..+..          ..|.+..|++++.++  +..++..|+-.|+|....            +++.|
T Consensus        14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~------------~~~~k   79 (457)
T 1xm9_A           14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFR------------STTNK   79 (457)
T ss_dssp             SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSS------------CHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC------------CHHHH
Confidence            355677777666666532          246678888888763  678999999999998652            25666


Q ss_pred             HHHHH-----HHHHHHc-cCCHHHHHHHHHHHHHHHhhhCCC--CChHHHHHHHHhhC--------CC--------CHHH
Q psy9795         117 EAIKG-----LILHLML-TSPEAIQKQLSDATAIIGKSDFPD--KWPSLITDMVAKFG--------TG--------DFHI  172 (337)
Q Consensus       117 ~~IK~-----~Ll~~L~-~~~~~Ir~ql~~~i~~Ia~~DfP~--~WPeLl~~L~~~l~--------s~--------d~~~  172 (337)
                      ..|.+     .|++.|. +.+..++.+.+.++..|+..+-..  --.+.+|.|++++.        ++        +...
T Consensus        80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            66654     5777777 556889999999999999873221  01167888999882        22        3344


Q ss_pred             HHHHHHHHHHHHhh
Q psy9795         173 INGVLHTAHSLFKR  186 (337)
Q Consensus       173 ~~~aL~~L~~i~k~  186 (337)
                      ...+..+|..++..
T Consensus       160 ~~~a~~aL~nLs~~  173 (457)
T 1xm9_A          160 FFNATGCLRNLSSA  173 (457)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHccC
Confidence            56888999988874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=84.29  E-value=20  Score=36.02  Aligned_cols=131  Identities=11%  Similarity=0.023  Sum_probs=85.8

Q ss_pred             cccCCCCChhhhHHHHHHHHHHH--hC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHH
Q psy9795          41 PNHDKNIQLESRSPTENFLESVE--TN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDR  116 (337)
Q Consensus        41 L~~~~spD~~~Rk~AE~~L~~~~--~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K  116 (337)
                      +.++.+.|...|+.+=..|--+.  +.  .......+..++++  +...|.++-+++.++.+.+            ++.-
T Consensus        44 ~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~--~~~~Krl~YL~l~~~~~~~------------~e~~  109 (621)
T 2vgl_A           44 FKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSN--RYTEKQIGYLFISVLVNSN------------SELI  109 (621)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCS--CHHHHHHHHHHHHHSCCCC------------HHHH
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCC--CHHHHHHHHHHHHHHccCC------------cHHH
Confidence            34333346666666655554322  22  22233344555543  7899999999999887442            2322


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHhhhh
Q psy9795         117 EAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKF--GTGDFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       117 ~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l--~s~d~~~~~~aL~~L~~i~k~yr  188 (337)
                      -.+=+.+..-+.++++.+|.....+++.|..   |+--+.+++.+.+++  .+.++.....|..|+..+++.+.
T Consensus       110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p  180 (621)
T 2vgl_A          110 RLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP  180 (621)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh
Confidence            3344555566666777887766666666654   345678999999999  77788888999999999999764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=83.81  E-value=9.4  Score=37.20  Aligned_cols=135  Identities=10%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             CCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCC---ChHHHHHHHHHHhccccccCcccCCCCCCC
Q psy9795          45 KNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADV---DMTIRIAGAVAFKNYVKRNWPLVEDEPDKI  111 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~---~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i  111 (337)
                      .|+|..+|.+|-..|..+..          ..|....|+.++.+.+.   ...+...|+-.+.|..+..-.       ..
T Consensus       153 ~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~-------~~  225 (510)
T 3ul1_B          153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP-------AP  225 (510)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS-------CC
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc-------hh
Confidence            46888999999888877643          24677788888765432   234444555566666543211       22


Q ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC----CChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         112 HASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD----KWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       112 ~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .-..-..+-..|+..+.+.+..++...+.+++.++...-..    .-..+++.|++++.+++......++.+|..++..
T Consensus       226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~  304 (510)
T 3ul1_B          226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  304 (510)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence            22222334445666676777889999999999998542100    1235789999999999999899999999988653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=82.83  E-value=33  Score=34.48  Aligned_cols=107  Identities=19%  Similarity=0.233  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHH-----HHHHHHHHccCCHHHHHHHHHHHH
Q psy9795          69 PLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAI-----KGLILHLMLTSPEAIQKQLSDATA  143 (337)
Q Consensus        69 ~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~I-----K~~Ll~~L~~~~~~Ir~ql~~~i~  143 (337)
                      +..|+.++.+.. ...++-.|+-.|.|.....|..        +...+..|     -..|+..|.+.+..++...+.+|+
T Consensus       310 v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~--------~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~  380 (584)
T 3l6x_A          310 VRIYISLLKESK-TPAILEASAGAIQNLCAGRWTY--------GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR  380 (584)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHHHHHHSSCSHH--------HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCccc--------cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            456777876643 6889999999999998877752        12323333     334566666677889999999999


Q ss_pred             HHHhhhCCCCCh----HHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHhh
Q psy9795         144 IIGKSDFPDKWP----SLITDMVAKFGTG--------DFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       144 ~Ia~~DfP~~WP----eLl~~L~~~l~s~--------d~~~~~~aL~~L~~i~k~  186 (337)
                      .++..  ++.+.    ..++.|++++.++        +...+..++.+|+.++-.
T Consensus       381 nLs~~--~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~  433 (584)
T 3l6x_A          381 NLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE  433 (584)
T ss_dssp             HHHTT--CSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHhCC--hhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence            99975  45553    5689999999876        245678899999999854

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=82.47  E-value=18  Score=37.38  Aligned_cols=127  Identities=7%  Similarity=0.068  Sum_probs=85.8

Q ss_pred             CChhhhHHHHHHHHHHH----------hCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHH
Q psy9795          47 IQLESRSPTENFLESVE----------TNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDR  116 (337)
Q Consensus        47 pD~~~Rk~AE~~L~~~~----------~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K  116 (337)
                      ++..+|..|-..|..+.          ...|.+..|+.++.+.+ +...+..|+-.++|.....            +.-.
T Consensus       288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~------------~~~~  354 (780)
T 2z6g_A          288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCS------------SNKP  354 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTST------------THHH
T ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcCh------------HHHH
Confidence            56677777766665443          23577888888887643 4556666667777765311            1112


Q ss_pred             HHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         117 EAIKGLILHLML----TSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       117 ~~IK~~Ll~~L~----~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ..++...+..|.    +.+..++...+.++..++...-+ ..-.++++.|++.+.+++......+..+|..++..
T Consensus       355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            333444444444    34567888889999999876522 23478999999999999998899999999988764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=80.81  E-value=28  Score=34.74  Aligned_cols=126  Identities=9%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             CChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHH
Q psy9795          47 IQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDR  116 (337)
Q Consensus        47 pD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K  116 (337)
                      ++...+..|-..|..+..          ..|.+..|++++.+.. ...++..|+-.|+|....             ++.|
T Consensus       152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~-------------~~~~  217 (644)
T 2z6h_A          152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-------------SSNK  217 (644)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTC-------------TTHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcC-------------cccH
Confidence            345666666556655442          2477888899887753 567777777788887531             1223


Q ss_pred             HH-HHHHHHHHHc----cCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         117 EA-IKGLILHLML----TSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       117 ~~-IK~~Ll~~L~----~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .. ++...+..|.    +.+..++...+.++..+++..-+ ..-.+.++.|++.+.++|......+..+|..++..
T Consensus       218 ~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             HHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            33 3333444443    34578899999999999875322 23358999999999999998889999999988874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=80.46  E-value=12  Score=35.24  Aligned_cols=129  Identities=7%  Similarity=0.012  Sum_probs=84.8

Q ss_pred             cCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHh--CCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHH
Q psy9795          43 HDKNIQLESRSPTENFLESVETNQNYPLLILTLVER--ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIK  120 (337)
Q Consensus        43 ~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~--~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK  120 (337)
                      --.|+|...||-.--.++.+.+.|+-......-+.+  ++.++.+|-.|.=.|=+....          .+    -+.+-
T Consensus        76 l~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----------~m----~~~l~  141 (355)
T 3tjz_B           76 LFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS----------TM----LQAIE  141 (355)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----------TT----HHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----------HH----HHHHH
Confidence            445778899999999999987776432222222221  123567777765555443211          22    23455


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         121 GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       121 ~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      ..+-++|.+.++.||+..+-++..+...+ |+-=..+++.+.+.+.+.|+-.++.|+.+|+++.+.
T Consensus       142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          142 RYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence            55667888888999999999988776442 321123456777777788988899999999999874

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=80.43  E-value=47  Score=32.71  Aligned_cols=98  Identities=14%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             HHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC
Q psy9795          74 TLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK  153 (337)
Q Consensus        74 ~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~  153 (337)
                      .|+.........+++||-.+-++.+..           | +-.+.-=+.++++.-+.+..||.|....+-.+++.+   .
T Consensus        33 ~Il~~~kg~~k~K~LaaQ~I~kffk~F-----------P-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~---~   97 (507)
T 3u0r_A           33 VILDGVKGGTKEKRLAAQFIPKFFKHF-----------P-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGE---N   97 (507)
T ss_dssp             HHHHGGGSCHHHHHHHHHHHHHHGGGC-----------G-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTT---C
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhhC-----------h-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhh---h
Confidence            343433447899999998877666543           1 112233356677777778899999888888888773   2


Q ss_pred             ChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         154 WPSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       154 WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      =+-..+.|+|++++++...+...=.+|.++++-
T Consensus        98 i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~  130 (507)
T 3u0r_A           98 LPRVADILTQLLQTDDSAEFNLVNNALLSIFKM  130 (507)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence            468999999999998876655555555555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1wa5c_	959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	1e-53
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-22
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-19
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-17
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-13

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  187 bits (474), Expect = 1e-53
 Identities = 88/271 (32%), Positives = 147/271 (54%), Gaps = 6/271 (2%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPD 109
            +   +E  L  +ET   + L +L ++   ++ ++ R+AGA+ FKN++KR W   E+   
Sbjct: 18  STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-ENGNH 76

Query: 110 KIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGD 169
            + A++ E IK  I+ LM++ P  +Q Q+ +A + I  SDFPD+WP+L++D+ ++    D
Sbjct: 77  LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD 136

Query: 170 FHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNP 229
                GVL  AHS+FKR+R  F+S +L+ EIK VLD F  PF  L K     +  +++N 
Sbjct: 137 MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196

Query: 230 TALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLRTDSIFVNS 289
            +L ++++ L+V  K++Y  N QD+PE+FEDN+ V M   H  L    P L         
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDP-----D 251

Query: 290 FRRFISDVETRRRAACDFVKILCKYMEDKMM 320
                S +   + +  + V++     ED   
Sbjct: 252 ETEHASVLIKVKSSIQELVQLYTTRYEDVFG 282

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (234), Expect = 6e-22
 Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 8/165 (4%)

Query: 50  ESRSPTENFLESVETNQNYPLLILTLVER-ADVDMTIRIAGAVAFKNYVKRNWPLVEDEP 108
             +   +  LE +    ++   ++ ++ +    D   R    +  KN VK ++       
Sbjct: 26  TIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF------- 78

Query: 109 DKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTG 168
                   + IK   L+ +  S   I+  +      I        WP L+  + +   + 
Sbjct: 79  QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE 138

Query: 169 DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTE 213
           D++   G       + +       S  L   +  ++  F + F  
Sbjct: 139 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 183

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 1e-19
 Identities = 38/285 (13%), Positives = 91/285 (31%), Gaps = 19/285 (6%)

Query: 50  ESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107
                 + FLE         + + +  ++         R+A  +  KN +    P ++ +
Sbjct: 16  LELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75

Query: 108 ----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMV 162
                  I A+ R  +K  +LH  L +        S   A I  ++ P ++WP LI  +V
Sbjct: 76  YQQRWLAIDANARREVKNYVLHT-LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLV 134

Query: 163 AKFGTGDF--HIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATIN 220
           A     +   H+    L     + +    +   ++L  +   +L    +   +   +   
Sbjct: 135 ANVTNPNSTEHMKESTLEAIGYICQ----DIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190

Query: 221 LVGEHKDNPTALKVIYNSLVVSCKIFYSLN-----FQDLPEYFEDNMVVWMPALHNLLVT 275
            +        +L+    +     +  + +       Q          +  +  + +L   
Sbjct: 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250

Query: 276 DVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
            +      ++F  +     SD++       +F   +C    D  +
Sbjct: 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI 295

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 2e-17
 Identities = 32/293 (10%), Positives = 77/293 (26%), Gaps = 38/293 (12%)

Query: 50  ESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107
             R  +E  L+ +  +    +  L   ++   +  +  RI  A+  KN +     +   +
Sbjct: 20  NIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79

Query: 108 -----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITDM 161
                  ++    +  IK   L  +++    I    +   A I   + P   WP L+  M
Sbjct: 80  FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIM 139

Query: 162 VAKFGTGDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINL 221
           V   G         V   +               +                 +  A +  
Sbjct: 140 VDNTGAEQ---PENVKRASLLAL---------GYMCESADPQSQALVSSSNNILIAIVQG 187

Query: 222 VGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVPCLR 281
               + +               ++       D   + ++NM       + +       + 
Sbjct: 188 AQSTETSKA------------VRLAALNALADSLIFIKNNMEREGERNYLM------QVV 229

Query: 282 TDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMMGTSTAGAKDLFPPI 334
            ++          +      +    +   +  YME  +   + A  K     +
Sbjct: 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKV 282

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 8e-13
 Identities = 38/282 (13%), Positives = 83/282 (29%), Gaps = 13/282 (4%)

Query: 50  ESRSPTENFLESVETNQ--NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE 107
                 + FLE         + + +  ++         R+A  +  KN +    P ++ +
Sbjct: 15  LELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 74

Query: 108 ----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-WPSLITDMV 162
                  I A+ R  +K  +L  +  +        S   A I  ++ P   WP LI  +V
Sbjct: 75  YQQRWLAIDANARREVKNYVLQTLG-TETYRPSSASQCVAGIACAEIPVNQWPELIPQLV 133

Query: 163 AKFGT--GDFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFT--ELFKAT 218
           A         H+    L     + +    E    K    +  ++    K      +  A 
Sbjct: 134 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAA 193

Query: 219 INLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVWMPALHNLLVTDVP 278
            N +    +   A     +      ++                 +  +  + +L    + 
Sbjct: 194 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV-AALQNLVKIMSLYYQYME 252

Query: 279 CLRTDSIFVNSFRRFISDVETRRRAACDFVKILCKYMEDKMM 320
                ++F  +     SD++       +F   +C    D  +
Sbjct: 253 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI 294

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.74
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.73
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.21
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.96
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.85
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.4
d1b3ua_	588	Constant regulatory domain of protein phosphatase	95.25
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	94.97
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	94.25
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	93.76
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.54
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	93.42
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	92.1
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	91.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	90.37
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	89.83
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	88.69
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	88.41
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	86.48
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	82.96
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	81.47

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-35  Score=309.37  Aligned_cols=273  Identities=32%  Similarity=0.566  Sum_probs=227.9

Q ss_pred             hccchhhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccC
Q psy9795          26 MCDRNGEFFCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE  105 (337)
Q Consensus        26 ~~~~~~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~  105 (337)
                      |+| -.+..++++++    +  |+++||+||++|++++++|||..+|++|+.+++.+.++|++|+|+|||.|+++|....
T Consensus         1 ~~d-~~~l~~ll~~s----~--~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           1 MSD-LETVAKFLAES----V--IASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             CCH-HHHHHHHHHHT----T--SGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             CCc-HHHHHHHHHHC----C--ChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            666 44555555444    3  3457999999999999999999999999999889999999999999999999997543


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         106 DEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       106 ~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                       .+..+|+++|+.||+.|++++.++++.||++++.+|+.|+++|||++||+|++.+.+.++++|...++++|.+|+.++|
T Consensus        74 -~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_          74 -GNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK  152 (959)
T ss_dssp             -SCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred             -ccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             2357999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhhccccCChHHHHHhHHHH
Q psy9795         186 RYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEHKDNPTALKVIYNSLVVSCKIFYSLNFQDLPEYFEDNMVVW  265 (337)
Q Consensus       186 ~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~~~~~~~~~~~~e~l~lilKif~~~~~~~lp~~~e~~l~~W  265 (337)
                      +|++..++++.+.+++.+++.+.+.+..++..+.+...+...+........++++.++|+|++++..++|+++++++..|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (959)
T d1wa5c_         153 RWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVG  232 (959)
T ss_dssp             GGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHH
T ss_pred             HHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            99998888888889999999999999999998888765544444555667888999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCCccchhhhhhhhccchhHHHhhhHHHHHHHH
Q psy9795         266 MPALHNLLVTDVPCLRTDSIFVNSFRRFISDVETRRRAACDFVKIL  311 (337)
Q Consensus       266 ~~~f~~iL~~~~p~l~~d~~~~r~~~~~~~~~~~~k~~~~~~~~~~  311 (337)
                      ++.|..+++.+.|....++.     +++.......|+.+|.+...+
T Consensus       233 ~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~~  273 (959)
T d1wa5c_         233 MGIFHKYLSYSNPLLEDPDE-----TEHASVLIKVKSSIQELVQLY  273 (959)
T ss_dssp             HHHHHHHHSCCSCCCC-----------CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccCchh-----hhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999886543322     223333444444455554444

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.7e-23  Score=211.01  Aligned_cols=149  Identities=18%  Similarity=0.278  Sum_probs=129.8

Q ss_pred             hcccCCCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC----CCCCCH
Q psy9795          40 VPNHDKNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE----PDKIHA  113 (337)
Q Consensus        40 tL~~~~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~----~~~i~~  113 (337)
                      +|.+++|||+++|++||++|++++++  |||..+|++++.+.+.+.++|++|+|+|||.+.++|....+.    +..+++
T Consensus         6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~   85 (876)
T d1qgra_           6 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDA   85 (876)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCH
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCH
Confidence            44556678889999999999999886  899999999999988999999999999999999999753321    357999


Q ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHhhhhh
Q psy9795         114 SDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGD--FHIINGVLHTAHSLFKRYRH  189 (337)
Q Consensus       114 e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d--~~~~~~aL~~L~~i~k~yr~  189 (337)
                      ++|+.||+.+++++.+.+ .++++++.+++.|+++||| ++||+|++.|.+.+.+++  .....++|.+|..+|+++..
T Consensus        86 ~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~  163 (876)
T d1qgra_          86 NARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP  163 (876)
T ss_dssp             HHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence            999999999999998754 5677899999999999999 789999999999987653  55678999999999998743

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.1e-21  Score=199.03  Aligned_cols=156  Identities=16%  Similarity=0.212  Sum_probs=135.2

Q ss_pred             hhHHHHHHhhcccCCCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCC-
Q psy9795          31 GEFFCSTQGVPNHDKNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDE-  107 (337)
Q Consensus        31 ~~~~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~-  107 (337)
                      ++|.+++.+++   .|||+++|++||++|+++.++  |+|...|++++.+.+.+..+|++|+++|||.+.++|...... 
T Consensus         4 ~~~~~~L~~~~---~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1           4 AEFAQLLENSI---LSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            56666665443   588999999999999999875  799999999999988899999999999999999999743211 


Q ss_pred             ----CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC-CChHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q psy9795         108 ----PDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD-KWPSLITDMVAKFGTGD-FHIINGVLHTAH  181 (337)
Q Consensus       108 ----~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~-~WPeLl~~L~~~l~s~d-~~~~~~aL~~L~  181 (337)
                          ...++++.|+.||+.+++++.++++.||++++.+++.|+++|+|+ +||+|++.|++.+++++ .....++|.+|+
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~  160 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG  160 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence                135899999999999999999989999999999999999999995 89999999999998764 456789999999


Q ss_pred             HHHhhhhh
Q psy9795         182 SLFKRYRH  189 (337)
Q Consensus       182 ~i~k~yr~  189 (337)
                      .+|+....
T Consensus       161 ~i~e~~~~  168 (861)
T d2bpta1         161 YMCESADP  168 (861)
T ss_dssp             HHHHTSST
T ss_pred             HHHHHhhH
Confidence            99987643

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.4e-18  Score=162.05  Aligned_cols=150  Identities=17%  Similarity=0.254  Sum_probs=127.7

Q ss_pred             hhcccCCCCChhhhHHHHHHHHHHHhC--CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC----CCCCCC
Q psy9795          39 GVPNHDKNIQLESRSPTENFLESVETN--QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED----EPDKIH  112 (337)
Q Consensus        39 ~tL~~~~spD~~~Rk~AE~~L~~~~~~--pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~----~~~~i~  112 (337)
                      .+|.++.|||+++|++||++|+++..+  |+|+..|++++.+.+.+..+|++|+++|||.+.++|.....    .+..++
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~   83 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID   83 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCC
Confidence            455667788999999999999998765  89999999999988788999999999999999999964321    134789


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhhhh
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKRYRH  189 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~yr~  189 (337)
                      ++.|..||+.+++.+.+++. +++.++.+++.++..++| ..||++++.+.+.+.++  +.....+++.++..++..+..
T Consensus        84 ~~~~~~i~~~ll~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~  162 (458)
T d1ibrb_          84 ANARREVKNYVLQTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP  162 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCS-SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHHHHhccCCCcH-HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999988654 455678999999999999 68999999999999764  556778999999999987643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.6e-22  Score=208.46  Aligned_cols=148  Identities=13%  Similarity=0.222  Sum_probs=134.9

Q ss_pred             HHHHHhhcccCCCCChhhhHHHHHHHHHHHhCCChHHHHHHHHHh-CCCChHHHHHHHHHHhccccccCcccCCCCCCCC
Q psy9795          34 FCSTQGVPNHDKNIQLESRSPTENFLESVETNQNYPLLILTLVER-ADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIH  112 (337)
Q Consensus        34 ~~~l~~tL~~~~spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~-~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~  112 (337)
                      .+-+.++|.+++|||+++|++||++|+++++.|+|..+|..++.+ .+.+..+|++|+++|||.|+++|.       .++
T Consensus        10 l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~-------~~~   82 (888)
T d1qbkb_          10 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-------NFP   82 (888)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTT-------CST
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc-------cCC
Confidence            344556788889999999999999999999999999999988775 344678999999999999999997       689


Q ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795         113 ASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       113 ~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr  188 (337)
                      ++.|+.||+.++.+|.++++.||++++.+|+.|++.|+|++||+|++.|.+.++++|.+.++++|.+|+.||++..
T Consensus        83 ~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~  158 (888)
T d1qbkb_          83 NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA  158 (888)
T ss_dssp             TTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999888899999999999999999999999999999999999888889999999999999754

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.022  Score=53.81  Aligned_cols=130  Identities=8%  Similarity=0.053  Sum_probs=96.5

Q ss_pred             CCCChhhhHHHHHHHHHHHhCCC-------hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH
Q psy9795          45 KNIQLESRSPTENFLESVETNQN-------YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE  117 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~~pg-------f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~  117 (337)
                      .++|+.+|.+|...|..+....+       +...+..+ .++ .....|..|+..+....    .       ..+++.+.
T Consensus        97 ~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L-~~~-~~~~~r~~a~~ll~~~~----~-------~~~~~~~~  163 (588)
T d1b3ua_          97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL-AGG-DWFTSRTSACGLFSVCY----P-------RVSSAVKA  163 (588)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH-HTC-SSHHHHHHHGGGHHHHT----T-------TSCHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcc-cchHHHHHHHHHHHHHH----H-------HhhHHHHH
Confidence            34578899999999988766421       22222233 332 24667887776666553    2       35577788


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         118 AIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       118 ~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .++..+.+.+.+.+..||...+.++..+++.--+ ..|+++++.+.+++++++......++.++..+....
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccC
Confidence            8888888888888899999999999999986332 458999999999999888888888999999888754

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.093  Score=44.60  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=96.9

Q ss_pred             CCChhhhHHHHHHHHHHHhC----------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVETN----------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~----------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      |+|+++|.+|=..|..+...          .|.+..|+.++.+. .+..+|..|+..+-+.++.+-           +..
T Consensus        70 s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~aL~~l~~~~~-----------~~~  137 (264)
T d1xqra1          70 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQE-----------AGL  137 (264)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCH-----------HHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcC-CCHHHHHHHHHHHHHHhccch-----------hhH
Confidence            67889999999888776642          36677888888764 467899988888888864421           112


Q ss_pred             HHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh-----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         116 REAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP-----SLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       116 K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP-----eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      +..++    ..|+..+.+.+..++...+.++..++..+ |+...     +.++.|+..++++|...+..++.+|..++..
T Consensus       138 ~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         138 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc-HHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            22222    45666666777889999999999988754 43333     4689999999999999999999999999986


Q ss_pred             hh
Q psy9795         187 YR  188 (337)
Q Consensus       187 yr  188 (337)
                      ..
T Consensus       217 ~~  218 (264)
T d1xqra1         217 FP  218 (264)
T ss_dssp             CH
T ss_pred             CH
Confidence            53

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.15  Score=50.73  Aligned_cols=136  Identities=11%  Similarity=0.130  Sum_probs=89.2

Q ss_pred             CCCChhhhHHHHHHHHHHHhC-----CCh----HHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          45 KNIQLESRSPTENFLESVETN-----QNY----PLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~~-----pgf----~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      .|+|...|..|=..|..+...     ..+    ...|+..+.+  .+..+|..|+..+.++..  |...     ...+..
T Consensus       405 ~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d--~~~~Vr~~a~~~l~~~~~--~~~~-----~~~~~~  475 (888)
T d1qbkb_         405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAH--WVVS-----QPPDTY  475 (888)
T ss_dssp             TSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHTHH--HHHS-----SCHHHH
T ss_pred             ccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccC--CCHHHHHHHHHHHHHHHH--Hhhh-----hhhhhh
Confidence            467888898887776654321     123    3334444433  368999999999988753  4321     111222


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC---CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhhh
Q psy9795         116 REAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP---DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRYRH  189 (337)
Q Consensus       116 K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP---~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr~  189 (337)
                      -..+=..++..+.+.++.|+...+.++..++..--+   ...+++++.+...++..+......++.++..+.+....
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            223444567777777889999999999999875443   24578888888888877666666777777777776533

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.048  Score=55.78  Aligned_cols=109  Identities=7%  Similarity=0.071  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh
Q psy9795          70 LLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD  149 (337)
Q Consensus        70 ~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D  149 (337)
                      ..|++=+.  +.|..+|.+|.--|.+.+++.+.       .++++.-..+-+.++.+|.+.++.||.+...|+..++.+-
T Consensus         6 ~~ll~k~~--~~D~d~R~ma~~dl~~~l~~~~~-------~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~   76 (1207)
T d1u6gc_           6 SNLLEKMT--SSDKDFRFMATNDLMTELQKDSI-------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV   76 (1207)
T ss_dssp             HHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCC-------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcC--CCCHhHHHHHHHHHHHHHhhccc-------ccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence            34444333  35888999998888888876554       3444444557778899998888999999999999998875


Q ss_pred             CCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         150 FPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       150 fP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      -+..++.+++.|+..+.+++......+-.+|+.++...
T Consensus        77 ~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l  114 (1207)
T d1u6gc_          77 KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL  114 (1207)
T ss_dssp             CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC
T ss_pred             cHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhc
Confidence            44678899999999888877777778888888888765

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.29  Score=49.67  Aligned_cols=138  Identities=13%  Similarity=0.104  Sum_probs=97.1

Q ss_pred             HHhhcccCCCCChhhhHHHHHHHHHHHhCC----------ChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCC
Q psy9795          37 TQGVPNHDKNIQLESRSPTENFLESVETNQ----------NYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVED  106 (337)
Q Consensus        37 l~~tL~~~~spD~~~Rk~AE~~L~~~~~~p----------gf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~  106 (337)
                      +.+.|+.-.|||+..|-.|...|.+.-+.+          .....|++.+.++  +..||..|.-.|...+.+       
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~--~~~Vq~~A~k~l~~l~~~-------   75 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSK-------   75 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh-------
Confidence            344566667899999999988776543322          2366777776553  689999998878777643       


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC---------CChHHHHHHHHhhCCC-CHHHHHHH
Q psy9795         107 EPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFPD---------KWPSLITDMVAKFGTG-DFHIINGV  176 (337)
Q Consensus       107 ~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~---------~WPeLl~~L~~~l~s~-d~~~~~~a  176 (337)
                          ++++.-..+.+.|+..+.+.....|...+.++..|...-.+.         -++.+++.+...+.+. +......+
T Consensus        76 ----~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~a  151 (1207)
T d1u6gc_          76 ----VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA  151 (1207)
T ss_dssp             ----SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             ----CcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence                456666788888888888877788888888888776543221         1355666666666554 66777889


Q ss_pred             HHHHHHHHhhh
Q psy9795         177 LHTAHSLFKRY  187 (337)
Q Consensus       177 L~~L~~i~k~y  187 (337)
                      +.++..+++.+
T Consensus       152 l~~l~~l~~~~  162 (1207)
T d1u6gc_         152 LDIMADMLSRQ  162 (1207)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.052  Score=51.07  Aligned_cols=131  Identities=8%  Similarity=0.005  Sum_probs=79.6

Q ss_pred             CCCChhhhHHHHHHHHHHHhC-------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH
Q psy9795          45 KNIQLESRSPTENFLESVETN-------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE  117 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~~-------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~  117 (337)
                      .+++..+|+.+=+.+..+.+.       +.+...+...+.+  ....||..|+-.+...++..=.          +..+.
T Consensus       412 ~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D--~~~~VR~~A~~~L~~l~~~~~~----------~~~~~  479 (588)
T d1b3ua_         412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD--HVYAIREAATSNLKKLVEKFGK----------EWAHA  479 (588)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHHCH----------HHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHHHhCc----------HHHHH
Confidence            456677788777777655431       1122333333333  2577888888777777654311          11223


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhh
Q psy9795         118 AIKGLILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKWPSLITDMVAKFGTGDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       118 ~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~y  187 (337)
                      .+-..+...+.+.+..+|.....++..++..--+ ...++++|.+.+.++++.++.+.++..+|..+.+.+
T Consensus       480 ~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~  550 (588)
T d1b3ua_         480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL  550 (588)
T ss_dssp             HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence            3344444444445567777777777777653211 134678888888888777888888888888887766

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.24  Score=40.96  Aligned_cols=122  Identities=11%  Similarity=0.076  Sum_probs=84.8

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      ++|+.+|..|=..|..+.. ++-+..|++++.++  +..+|..|+..|.+.-....         .    ...+-..++.
T Consensus        30 d~~~~vR~~A~~~L~~~~~-~~~~~~l~~~l~d~--~~~vr~~a~~aL~~l~~~~~---------~----~~~~~~~l~~   93 (276)
T d1oyza_          30 DHNSLKRISSARVLQLRGG-QDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKK---------C----EDNVFNILNN   93 (276)
T ss_dssp             CSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTT---------T----HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCC-HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhccccc---------c----ccchHHHHHH
Confidence            6788999999999987753 55677888887764  78999999998876522111         1    1222334444


Q ss_pred             HHc-cCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy9795         126 LML-TSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAHSLF  184 (337)
Q Consensus       126 ~L~-~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~~i~  184 (337)
                      .+. +++..||.....++..+...+ +..=|.+++.+...+.+.+......+..++..+-
T Consensus        94 ~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          94 MALNDKSACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  152 (276)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             HHhcCCChhHHHHHHHHHHHHcccc-chhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence            444 456889999999999998765 2223678888888888877776666666665543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.25  E-value=0.023  Score=42.05  Aligned_cols=107  Identities=14%  Similarity=0.060  Sum_probs=75.9

Q ss_pred             CCChhhhHHHHHHHHHHHhCCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHH
Q psy9795          46 NIQLESRSPTENFLESVETNQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILH  125 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~  125 (337)
                      ++|+.+|..|-..|..+.  +.....|+..+.+  .+..+|..|+..|-+.-    .          +    ..-..|+.
T Consensus         3 D~~~~VR~~A~~aL~~~~--~~~~~~L~~~l~d--~~~~vR~~a~~~L~~~~----~----------~----~~~~~L~~   60 (111)
T d1te4a_           3 DENKWVRRDVSTALSRMG--DEAFEPLLESLSN--EDWRIRGAAAWIIGNFQ----D----------E----RAVEPLIK   60 (111)
T ss_dssp             SSCCCSSSSCCSSTTSCS--STTHHHHHHGGGC--SCHHHHHHHHHHHGGGC----S----------H----HHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhC--HHHHHHHHHHHcC--CCHHHHHHHHHHHHhcc----h----------h----hhHHHHHh
Confidence            456677777766665543  3456667776664  36899999998885431    0          1    12345677


Q ss_pred             HHccCCHHHHHHHHHHHHHHHhhhCCCCChHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy9795         126 LMLTSPEAIQKQLSDATAIIGKSDFPDKWPSLITDMVAKFGTGDFHIINGVLHTAH  181 (337)
Q Consensus       126 ~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WPeLl~~L~~~l~s~d~~~~~~aL~~L~  181 (337)
                      ++.+.+..||...+.++..|..       ++.++.|...++++|......++.+|.
T Consensus        61 ~l~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          61 LLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7778888999999999988742       567888888888888888788877664

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=1.7  Score=41.07  Aligned_cols=180  Identities=11%  Similarity=0.050  Sum_probs=103.2

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhh-
Q psy9795          71 LILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTSPEAIQKQLSDATAIIGKSD-  149 (337)
Q Consensus        71 ~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D-  149 (337)
                      .++.++.+ ..+..+|..+...+.+.+.....       .+ ..--..+-..++.++.+.+..+|.....+++.|++.- 
T Consensus       601 ~l~~~l~~-~~~~~v~~~~l~~l~~l~~~~~~-------~~-~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~  671 (861)
T d2bpta1         601 LFFRLLEK-KDSAFIEDDVFYAISALAASLGK-------GF-EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE  671 (861)
T ss_dssp             HHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGG-------GG-HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred             HHhhhccc-CCchhHHHHHHHHHHHHHHHhhH-------HH-HHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH
Confidence            33444444 33566777776666666554332       11 1122456667777787777789988888999988652 


Q ss_pred             --CCCCChHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Q psy9795         150 --FPDKWPSLITDMVAKFGTG--DFHIINGVLHTAHSLFKRYRHEFKSQKLWTEIKFVLDNFAKPFTELFKATINLVGEH  225 (337)
Q Consensus       150 --fP~~WPeLl~~L~~~l~s~--d~~~~~~aL~~L~~i~k~yr~~~~s~~l~~el~~il~~~~~~L~~lf~~l~~~~~~~  225 (337)
                        +...-+++++.+++.++++  +......++.|++.++.....     ..    .+.++       .+++.+.+.++..
T Consensus       672 ~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~-----~~----~~~l~-------~~~~~l~~~~~~~  735 (861)
T d2bpta1         672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-----DF----IPYLN-------DIMALCVAAQNTK  735 (861)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-----GG----HHHHH-------HHHHHHHHHHTCC
T ss_pred             HHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-----HH----HHHHH-------HHHHHHHHHhCcC
Confidence              2234578888888888765  445567899999999987632     11    11222       3333333333221


Q ss_pred             C--CChhHHHHHHHHHHHHHHHhhhccc--cCChHHHHHhHHHHHHHHHHhhcc
Q psy9795         226 K--DNPTALKVIYNSLVVSCKIFYSLNF--QDLPEYFEDNMVVWMPALHNLLVT  275 (337)
Q Consensus       226 ~--~~~~~~~~~~e~l~lilKif~~~~~--~~lp~~~e~~l~~W~~~f~~iL~~  275 (337)
                      .  .+........++...++..|..+++  .+-|+.+.+.++..++....++..
T Consensus       736 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~  789 (861)
T d2bpta1         736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAED  789 (861)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHC
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            1  1222222223334455555555433  234667777888877777666654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=2.2  Score=38.69  Aligned_cols=135  Identities=7%  Similarity=0.025  Sum_probs=96.0

Q ss_pred             HHHhhcccCCCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccC
Q psy9795          36 STQGVPNHDKNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVE  105 (337)
Q Consensus        36 ~l~~tL~~~~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~  105 (337)
                      .+...|.   +.|..+|..|=..|..+..          .+|+...|++++.+.+ +..+|-.|+-.|++.....     
T Consensus        21 ~L~~lL~---~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~-----   91 (529)
T d1jdha_          21 ELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHR-----   91 (529)
T ss_dssp             HHHHHHT---CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSH-----
T ss_pred             HHHHHHc---CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCc-----
Confidence            3444454   4567889988887777643          3567888999887754 6788888888888874321     


Q ss_pred             CCCCCCCHHHHHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCC----CChHHHHHHHHhhCCCCHHHHHHHH
Q psy9795         106 DEPDKIHASDREAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPD----KWPSLITDMVAKFGTGDFHIINGVL  177 (337)
Q Consensus       106 ~~~~~i~~e~K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~----~WPeLl~~L~~~l~s~d~~~~~~aL  177 (337)
                             +.-+..++    ..|+..|.+.+..++...+.++..|+...-..    ...+.++.|+..+++++......+.
T Consensus        92 -------~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~  164 (529)
T d1jdha_          92 -------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT  164 (529)
T ss_dssp             -------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHH
T ss_pred             -------hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHH
Confidence                   11122333    34555555567899999999999998754221    2456789999999999998889999


Q ss_pred             HHHHHHHhh
Q psy9795         178 HTAHSLFKR  186 (337)
Q Consensus       178 ~~L~~i~k~  186 (337)
                      .+|..++..
T Consensus       165 ~~L~~l~~~  173 (529)
T d1jdha_         165 DCLQILAYG  173 (529)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhhh
Confidence            999998864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.87  E-value=0.57  Score=41.32  Aligned_cols=129  Identities=12%  Similarity=0.101  Sum_probs=89.4

Q ss_pred             CCCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHH
Q psy9795          45 KNIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHAS  114 (337)
Q Consensus        45 ~spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e  114 (337)
                      .+.|++.+..|=..|..+..          .+|....|.+++.+.  +..++..|.-.+.|.+...            ++
T Consensus       198 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~--~~~~~~~al~~l~~l~~~~------------~~  263 (434)
T d1q1sc_         198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGT------------DE  263 (434)
T ss_dssp             TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSC------------HH
T ss_pred             hccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccc--hhhhhhchhhhhhhHHhhh------------hH
Confidence            35677888877666655432          457788888877654  6889999999999887432            11


Q ss_pred             HH-HHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhh--CCCCC--hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         115 DR-EAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSD--FPDKW--PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       115 ~K-~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~D--fP~~W--PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      .+ ..++    +.++..+.+.+..+|...+.++..++...  ....+  .++++.+++.+.+++......+..++..++.
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence            11 2222    23555666667889999999999988532  11112  2478889999988999889999999999887


Q ss_pred             hh
Q psy9795         186 RY  187 (337)
Q Consensus       186 ~y  187 (337)
                      ..
T Consensus       344 ~~  345 (434)
T d1q1sc_         344 GG  345 (434)
T ss_dssp             HS
T ss_pred             cC
Confidence            64

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.64  Score=39.00  Aligned_cols=126  Identities=10%  Similarity=0.010  Sum_probs=82.5

Q ss_pred             ChhhhHHHHHHHHHHHhC---------CChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH-
Q psy9795          48 QLESRSPTENFLESVETN---------QNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE-  117 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~~---------pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~-  117 (337)
                      |.+.|..|=..|..+-..         -|-+..|+..+.+ +.+..+|..|+-.+.+....+            +..+. 
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~-s~~~~vr~~A~~~L~~l~~~~------------~~~~~~   96 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNV------------AAIQEQ   96 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTC------------HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH------------HHHHHH
Confidence            445555555555554332         2334445543333 247899999999999987542            22222 


Q ss_pred             HHH----HHHHHHHcc-CCHHHHHHHHHHHHHHHhhhCCCCC----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         118 AIK----GLILHLMLT-SPEAIQKQLSDATAIIGKSDFPDKW----PSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       118 ~IK----~~Ll~~L~~-~~~~Ir~ql~~~i~~Ia~~DfP~~W----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .++    ..|+..+.+ .+..+|...+.+++.+++..-+..+    .+-++.|+..+.+++......++.++..++..
T Consensus        97 ~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~  174 (264)
T d1xqra1          97 VLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  174 (264)
T ss_dssp             HHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc
Confidence            223    345565544 4578999999999999876533222    23478888999999998888999999999875

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=3.9  Score=34.73  Aligned_cols=106  Identities=11%  Similarity=0.096  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHH-----HHHHHHccCCHHHHHHHHHHH
Q psy9795          68 YPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKG-----LILHLMLTSPEAIQKQLSDAT  142 (337)
Q Consensus        68 f~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~-----~Ll~~L~~~~~~Ir~ql~~~i  142 (337)
                      -++.|++.+.++  ++.+|..|+-+++|....+            ++.|..|++     .|++.|.+.+..+|...+.++
T Consensus         3 ~ip~lv~~L~~~--~~~~~~~a~~~l~~l~~~~------------~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL   68 (457)
T d1xm9a1           3 TIPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQD------------ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGAL   68 (457)
T ss_dssp             CHHHHHHHHHSS--CTHHHHHHHHHHHHHTSSC------------SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCC--CHHHHHHHHHHHHHHHcCC------------HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence            356788888764  6899999999999987432            345566664     377777777789999999999


Q ss_pred             HHHHhhhCCC--C--ChHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhh
Q psy9795         143 AIIGKSDFPD--K--WPSLITDMVAKFGT-GDFHIINGVLHTAHSLFKRY  187 (337)
Q Consensus       143 ~~Ia~~DfP~--~--WPeLl~~L~~~l~s-~d~~~~~~aL~~L~~i~k~y  187 (337)
                      ..++..+-+.  .  -.+-++.+++.+.+ .+......+..+|..++...
T Consensus        69 ~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~  118 (457)
T d1xm9a1          69 RNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence            9998432110  0  11236777777764 47777889999999998865

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.69  E-value=5  Score=35.98  Aligned_cols=125  Identities=10%  Similarity=0.112  Sum_probs=89.6

Q ss_pred             ChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHH
Q psy9795          48 QLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDRE  117 (337)
Q Consensus        48 D~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~  117 (337)
                      |...+..|-..|..+..          ..|....+.+++.++  +..+|..|+-.|.|.....            ++.|.
T Consensus       133 ~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~--~~~i~~~a~~~L~nia~~~------------~~~r~  198 (503)
T d1wa5b_         133 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDS------------TDYRD  198 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTC------------HHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC--ChhHHHHHHHHHHHHhhhh------------HHHHH
Confidence            55677777777765533          357788888888874  5789999999998876432            33333


Q ss_pred             HHHH-----HHHHHHccCCHHHHHHHHHHHHHHHhhhCC-CCC---hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q psy9795         118 AIKG-----LILHLMLTSPEAIQKQLSDATAIIGKSDFP-DKW---PSLITDMVAKFGTGDFHIINGVLHTAHSLFKR  186 (337)
Q Consensus       118 ~IK~-----~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP-~~W---PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~  186 (337)
                      .+.+     .++..+.+....++...+.++..++...-| ...   ..+++.++..+.++|...+..++.++..++..
T Consensus       199 ~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~  276 (503)
T d1wa5b_         199 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  276 (503)
T ss_dssp             HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             HHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC
Confidence            3332     344555555678888999999999976544 222   35789999999999999889999999988864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.41  E-value=0.56  Score=41.33  Aligned_cols=128  Identities=12%  Similarity=0.146  Sum_probs=88.8

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      +++...+..|-..|..+..          ..|....|..++.+  .+..+|..|+-.+.|.....            ++.
T Consensus       241 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~------------~~~  306 (434)
T d1q1sc_         241 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGR------------QDQ  306 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHTTSC------------HHH
T ss_pred             cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc--cchhhhHHHHHHHhhhcccc------------chh
Confidence            4577888888887776543          23445556666654  36789999999998886431            222


Q ss_pred             HHHH-----HHHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCC-C----hHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Q psy9795         116 REAI-----KGLILHLMLTSPEAIQKQLSDATAIIGKSDFPDK-W----PSLITDMVAKFGTGDFHIINGVLHTAHSLFK  185 (337)
Q Consensus       116 K~~I-----K~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~-W----PeLl~~L~~~l~s~d~~~~~~aL~~L~~i~k  185 (337)
                      +..+     =..+++.+.+.+..+|...+.++..++...-++. .    .+.++.|++.++++|...+..++.++..+++
T Consensus       307 ~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         307 IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2222     2356666666778899999999999887642221 1    1347889999999999999999999999987


Q ss_pred             hh
Q psy9795         186 RY  187 (337)
Q Consensus       186 ~y  187 (337)
                      -.
T Consensus       387 ~~  388 (434)
T d1q1sc_         387 AA  388 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.96  E-value=4.7  Score=36.16  Aligned_cols=126  Identities=14%  Similarity=0.141  Sum_probs=86.5

Q ss_pred             CCChhhhHHHHHHHHHHHh----------CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHH
Q psy9795          46 NIQLESRSPTENFLESVET----------NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASD  115 (337)
Q Consensus        46 spD~~~Rk~AE~~L~~~~~----------~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~  115 (337)
                      +++..++..|=..|..+..          ..|+...|..++.+  .+..+|..|+-.+-|.....           ++..
T Consensus       299 ~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~i~~~~~~~l~nl~~~~-----------~~~~  365 (503)
T d1wa5b_         299 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGN-----------TEQI  365 (503)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC-----------HHHH
T ss_pred             CCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC--CCHHHHHHHHHHHHHHhhcc-----------HHHH
Confidence            4566788777776665533          24666777776654  36789999988888876431           1111


Q ss_pred             HHHHH----HHHHHHHccCCHHHHHHHHHHHHHHHhhhCCCCCh---------HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9795         116 REAIK----GLILHLMLTSPEAIQKQLSDATAIIGKSDFPDKWP---------SLITDMVAKFGTGDFHIINGVLHTAHS  182 (337)
Q Consensus       116 K~~IK----~~Ll~~L~~~~~~Ir~ql~~~i~~Ia~~DfP~~WP---------eLl~~L~~~l~s~d~~~~~~aL~~L~~  182 (337)
                      +..+.    ..+++.+.+.+..++...+.+++.++....  .++         ++++.++..+.++|...+..+|.++..
T Consensus       366 ~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~  443 (503)
T d1wa5b_         366 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL--QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN  443 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT--TCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccc--ccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            22222    345566666778899999999999987642  333         345667888888898888899999888


Q ss_pred             HHhh
Q psy9795         183 LFKR  186 (337)
Q Consensus       183 i~k~  186 (337)
                      +++.
T Consensus       444 ll~~  447 (503)
T d1wa5b_         444 ILKM  447 (503)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=14  Score=31.27  Aligned_cols=117  Identities=8%  Similarity=-0.032  Sum_probs=78.6

Q ss_pred             CCChHHHHHHHHHhCCCChHHHHHHHHHHhccccccCcccCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHH
Q psy9795          65 NQNYPLLILTLVERADVDMTIRIAGAVAFKNYVKRNWPLVEDEPDKIHASDREAIKGLILHLMLTS--PEAIQKQLSDAT  142 (337)
Q Consensus        65 ~pgf~~~Ll~i~~~~~~~~~iRq~AaI~LKN~V~~~W~~~~~~~~~i~~e~K~~IK~~Ll~~L~~~--~~~Ir~ql~~~i  142 (337)
                      -|++...+++.+.+...+...|..+.-.+....... ..      ......-..+-..+++.+.+.  ...+|.....++
T Consensus       125 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~------~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l  197 (458)
T d1ibrb_         125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DP------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNAL  197 (458)
T ss_dssp             CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CG------GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cc------hhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence            378999999998887777788877766665544221 10      122334466777788888764  357888877777


Q ss_pred             HHHHhhhCC-CCCh----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhhh
Q psy9795         143 AIIGKSDFP-DKWP----SLITDMVAKFGTGDFHIINGVLHTAHSLFKRYR  188 (337)
Q Consensus       143 ~~Ia~~DfP-~~WP----eLl~~L~~~l~s~d~~~~~~aL~~L~~i~k~yr  188 (337)
                      ..+...-.+ ..+.    .+.+.+...++++|......++.+|..+++.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~  248 (458)
T d1ibrb_         198 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  248 (458)
T ss_dssp             HHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            777643211 2343    355566666777888888999999999998863