Psyllid ID: psy9878

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
TVTGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTDNSYR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEcccccEEEEccccEEEEcccccccccEEccccccEEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEccccEEEEEEEEccccHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHccccHHHHHEEEccccEEEEEEEEccEccccccccccEEEEEccccEEEEEEEEEEEEEcccccEEccccccccccccccEEEEEccccEEEEEccccEEEEcccccEEEEEccEEcccccHHHHHHcccccccHHHHHHHcccccHHHccccccccccEEEccccccccHHHHHHHHHHccccHHHHHcccccHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEEEccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
tvtgpvvnrlcpyLDTINRQLLDFDFEKLCSVSLSRINVYACLVcgkyfqgrgtntfAYTHSVAESHHVFLNLhtlkfyclpdnyeivgtvagpvvnrlcpyLDTINRQLLDFDFEKLCSVSLSRINVYACLVcgkyfqdsslddikyvlnptfttdqikqldlsdkmsraidgtlylpgivglnnikandYCNVILQALCHVTPLRDYFLREINYarvkrppgdssFLLVQRFGELMRklwnprnfkshvsphEMLQAVVLWSRKQfqfteqsdpidFLSWFLNTLHRALngtkkkdssIVYKTFLGsmkvktrkippvelEEKVRQRLLLTDNSYR
Flexible Loop (DISEMBL)
tvtgpvvnrlcpyLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTfttdqikqldlsDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYarvkrppgdsSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAlngtkkkdssivyktflgsmkvktrkippveleekvrqrllltdnsyr
Low Complexity Region (SEG)
TVTGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTDNSYR
Disordered region (IsUnstruct)
*****VVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTR***********************
Disordered Region (DISOPRED)
********RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDF**E******LSRINV*********************************************GTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG*******IVYKTFLGSMK********************LT*****
Disordered Region (DISEMBL)
TVTGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTDNSYR
Disordered Region (DISPRO)
*******NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPV******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TVTGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTDNSYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q53GS9	565	U4/U6.U5 tri-snRNP-associ	yes	N/A	0.816	0.488	0.605	1e-105
Q3TIX9	564	U4/U6.U5 tri-snRNP-associ	yes	N/A	0.816	0.489	0.605	1e-105
Q5R761	565	U4/U6.U5 tri-snRNP-associ	yes	N/A	0.816	0.488	0.599	1e-104
Q9USR2	502	Probable mRNA-splicing pr	yes	N/A	0.612	0.412	0.447	2e-54
P43589	448	Pre-mRNA-splicing factor	yes	N/A	0.742	0.560	0.304	1e-28
A6QR55	963	Ubiquitin carboxyl-termin	no	N/A	0.343	0.120	0.333	1e-10
Q5RCD3	963	Ubiquitin carboxyl-termin	no	N/A	0.343	0.120	0.333	1e-10
Q13107	963	Ubiquitin carboxyl-termin	no	N/A	0.343	0.120	0.333	1e-10
P35123	962	Ubiquitin carboxyl-termin	no	N/A	0.343	0.120	0.325	3e-10
B2GUZ1	961	Ubiquitin carboxyl-termin	no	N/A	0.343	0.120	0.325	5e-10

>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 223/327 (68%), Gaps = 51/327 (15%)

Query: 8   NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
           +R CPYLDTINR +LDFDFEKLCS+SLS IN YACLVCGKYFQGRG  + AY HSV  SH
Sbjct: 102 SRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSH 161

Query: 68  HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
           HVFLNLHTLKFYCLPDNYEI+                                       
Sbjct: 162 HVFLNLHTLKFYCLPDNYEII--------------------------------------- 182

Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
                       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPGIVGLNNI
Sbjct: 183 ------------DSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNI 230

Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
           KANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRKLWNPRNF
Sbjct: 231 KANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNF 290

Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
           K+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +IV   F 
Sbjct: 291 KAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQ 350

Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
           GSM++ T+K+P  +L  + +++LL  D
Sbjct: 351 GSMRIFTKKLPHPDLPAEEKEQLLHND 377

May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).
Homo sapiens (taxid: 9606)

>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 223/327 (68%), Gaps = 51/327 (15%)

Query: 8   NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
           +R CPYLDTINR +LDFDFEKLCS+SLS IN YACLVCGKYFQGRG  + AY HSV  SH
Sbjct: 101 SRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSH 160

Query: 68  HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
           HVFLNLHTLKFYCLPDNYEI+                                       
Sbjct: 161 HVFLNLHTLKFYCLPDNYEII--------------------------------------- 181

Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
                       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPGIVGLNNI
Sbjct: 182 ------------DSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNI 229

Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
           KANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRKLWNPRNF
Sbjct: 230 KANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNF 289

Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
           K+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +IV   F 
Sbjct: 290 KAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQ 349

Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
           GSM++ T+K+P  +L  + +++LL  D
Sbjct: 350 GSMRIFTKKLPHPDLPAEEKEQLLHND 376

May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).

Mus musculus (taxid: 10090)

>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/327 (59%), Positives = 222/327 (67%), Gaps = 51/327 (15%)

Query: 8   NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
           +R CPYLDTINR +LDFDFEKLCS+S S +N YACLVCGKYFQGRG  + AY HSV  SH
Sbjct: 102 SRHCPYLDTINRSVLDFDFEKLCSISPSHVNAYACLVCGKYFQGRGLKSHAYIHSVQFSH 161

Query: 68  HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
           HVFLNLHTLKFYCLPDNYEI+                                       
Sbjct: 162 HVFLNLHTLKFYCLPDNYEII--------------------------------------- 182

Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
                       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPGIVGLNNI
Sbjct: 183 ------------DSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNI 230

Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
           KANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRKLWNPRNF
Sbjct: 231 KANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNF 290

Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
           K+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +IV   F 
Sbjct: 291 KAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQ 350

Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
           GSM++ T+K+P  +L  + +++LL  D
Sbjct: 351 GSMRIFTKKLPHPDLPAEEKEQLLHND 377

May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).

Pongo abelii (taxid: 9601)

>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/257 (44%), Positives = 157/257 (61%), Gaps = 50/257 (19%)

Query: 102 YLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQ---------------------- 139
           YLDTINR+LLDFDFEK+CSVSL+ ++VYACLVCG+YFQ                      
Sbjct: 60  YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVN 119

Query: 140 ----------------DSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVG 183
                            S+L DI YV+ PTFT  ++++LD + ++S  +    Y+PG VG
Sbjct: 120 CSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVG 179

Query: 184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWN 243
           +NNIK NDY NV++  L HV P R+YFL + N+        D+   LVQR   L+RKLWN
Sbjct: 180 MNNIKNNDYFNVVIHMLAHVKPFRNYFLLK-NF--------DNCPQLVQRLAILIRKLWN 230

Query: 244 PRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---KDSS 300
            + FKSHVSP E++Q V + S K++   EQ DP++FLSWFLNTLH  L G K    K +S
Sbjct: 231 HKAFKSHVSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTS 290

Query: 301 IVYKTFLGSMKVKTRKI 317
           IV+ +F G ++++++KI
Sbjct: 291 IVHYSFQGFVRIESQKI 307

May play a role in mRNA splicing. It is unsure if the protein really exhibits hydrolase activity. Could be a competitor of ubiquitin C-terminal hydrolases (UCHs).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 71/322 (22%)

Query: 13  YLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLN 72
           YL+T+ R+ LDFD EK+C ++LS +NVY CLVCG Y+QGR   + A+ HS+ E+HHVFLN
Sbjct: 31  YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLN 90

Query: 73  LHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACL 132
           L +LKFY LP N +I+    G V             QL                      
Sbjct: 91  LTSLKFYMLPQNVQILHD--GEV-------------QL---------------------- 113

Query: 133 VCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAID--GTLYLPGIVGLNNIKAN 190
                     L+ IK+   PT+        DL D   +  D     YL G +G  N    
Sbjct: 114 ----------LNSIKFAAYPTYCPK-----DLEDFPRQCFDLSNRTYLNGFIGFTNAATY 158

Query: 191 DYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSH 250
           DY + +L  + H+ P+RD+FL  +N+        D+    ++R    ++K+W+P+ FK H
Sbjct: 159 DYAHSVLLLISHMVPVRDHFL--LNHF-------DNQGEFIKRLSICVKKIWSPKLFKHH 209

Query: 251 VSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSM 310
           +S  + +  + +  R+        DP  FL W  N +  + N  K    SI+  +  G +
Sbjct: 210 LSVDDFVSYLKV--REGLNLN-PIDPRLFLLWLFNKICSSSNDLK----SILNHSCKGKV 262

Query: 311 KVKTRKIPPVELEEKVRQRLLL 332
           K+   +  P E  E V  ++++
Sbjct: 263 KIAKVENKP-EASESVTGKVIV 283

Promotes the assembly of newly synthesized U4 snRNA into the U4/U6 snRNP particle. Required for splicing of pre-mRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           PG+ GL N+    + N  LQ L +  PL DYFL++   A + R  P      + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           ++++W+ R+  +HV+P  M +  V     QF   +Q D  + L++ L+ LH  LN  KKK
Sbjct: 359 IKQMWSGRD--AHVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 415

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           PG+ GL N+    + N  LQ L +  PL DYFL++   A + R  P      + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           ++++W+ R+  +HV+P  M +  V     QF   +Q D  + L++ L+ LH  LN  KKK
Sbjct: 359 IKQMWSGRD--AHVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 415

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           PG+ GL N+    + N  LQ L +  PL DYFL++   A + R  P      + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           ++++W+ R+  +HV+P  M +  V     QF   +Q D  + L++ L+ LH  LN  KKK
Sbjct: 359 IKQMWSGRD--AHVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 415

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           PG+ GL N+    + N  LQ L +  PL +YFL++   A + R  P      + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           ++++W+ R+  +HV+P  M +  V     QF   +Q D  + L++ L+ LH  LN  KKK
Sbjct: 359 IKQMWSGRD--THVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKK 415

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           PG+ GL N+    + N  LQ L +  PL +YFL++   A + R  P      + + + EL
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 358

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           ++++W+ R+  +HV+P  M +  V     QF   +Q D  + L++ L+ LH  LN  KKK
Sbjct: 359 IKQMWSGRD--THVAPR-MFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKK 415

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
242017490	482	U4/U6.U5 tri-snRNP-associated protein, p	0.816	0.572	0.715	1e-134
328703901	461	PREDICTED: u4/U6.U5 tri-snRNP-associated	0.819	0.600	0.740	1e-134
345489070	496	PREDICTED: U4/U6.U5 tri-snRNP-associated	0.819	0.558	0.704	1e-129
189235059	501	PREDICTED: similar to ubiquitin specific	0.834	0.562	0.676	1e-129
380021530	508	PREDICTED: U4/U6.U5 tri-snRNP-associated	0.810	0.539	0.707	1e-126
332028251	507	U4/U6.U5 tri-snRNP-associated protein 2	0.810	0.540	0.701	1e-126
328782425	508	PREDICTED: u4/U6.U5 tri-snRNP-associated	0.810	0.539	0.707	1e-126
350415794	508	PREDICTED: LOW QUALITY PROTEIN: U4/U6.U5	0.810	0.539	0.701	1e-126
340713360	502	PREDICTED: u4/U6.U5 tri-snRNP-associated	0.810	0.545	0.701	1e-125
383862535	508	PREDICTED: U4/U6.U5 tri-snRNP-associated	0.810	0.539	0.698	1e-125

>gi|242017490|ref|XP_002429221.1| U4/U6.U5 tri-snRNP-associated protein, putative [Pediculus humanus corporis] gi|212514110|gb|EEB16483.1| U4/U6.U5 tri-snRNP-associated protein, putative [Pediculus humanus corporis]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/327 (71%), Positives = 261/327 (79%), Gaps = 51/327 (15%)

Query: 8   NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESH 67
           +RLCPYLDTINRQ+LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNT AYTHSV++ H
Sbjct: 21  HRLCPYLDTINRQVLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTLAYTHSVSDGH 80

Query: 68  HVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRIN 127
           HV+LNLHTLKFYCLPDNYEI+                                       
Sbjct: 81  HVYLNLHTLKFYCLPDNYEII--------------------------------------- 101

Query: 128 VYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI 187
                       DSSLDDIKYVLNPTFT++ I  LD +DK+SRAIDGTLYLPGIVGLNNI
Sbjct: 102 ------------DSSLDDIKYVLNPTFTSEHINSLDKTDKLSRAIDGTLYLPGIVGLNNI 149

Query: 188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF 247
           KANDYCNV+LQAL HV+PLR+YFLRE+NY++VKRPPGDSSFLLVQRFGEL+RKLWNPRNF
Sbjct: 150 KANDYCNVVLQALSHVSPLRNYFLREVNYSKVKRPPGDSSFLLVQRFGELLRKLWNPRNF 209

Query: 248 KSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL 307
           K+HVSPHEMLQAVVLWSRK+FQFTEQ DPIDFLSWF+N+LH ALNGTKK DSSI+YK+FL
Sbjct: 210 KAHVSPHEMLQAVVLWSRKKFQFTEQGDPIDFLSWFINSLHIALNGTKKPDSSIIYKSFL 269

Query: 308 GSMKVKTRKIPPVELEEKVRQRLLLTD 334
           GSM++ TRKIPP ELE+K +  LLLTD
Sbjct: 270 GSMRIYTRKIPPTELEDKQKVALLLTD 296

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328703901|ref|XP_001946816.2| PREDICTED: u4/U6.U5 tri-snRNP-associated protein 2-like [Acyrthosiphon pisum]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/328 (74%), Positives = 255/328 (77%), Gaps = 51/328 (15%)

Query: 7   VNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAES 66
           V+RLCPYLDTINRQ+LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNT AYTHSVAES
Sbjct: 4   VHRLCPYLDTINRQVLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTHAYTHSVAES 63

Query: 67  HHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRI 126
           HHVFLNL TLKFYCLPDNYEIV                                      
Sbjct: 64  HHVFLNLQTLKFYCLPDNYEIV-------------------------------------- 85

Query: 127 NVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNN 186
                        DSSLDDIKYVLNPTFT   + QLD  DK SRAIDGTLYLPGIVGLNN
Sbjct: 86  -------------DSSLDDIKYVLNPTFTPKHVGQLDTCDKRSRAIDGTLYLPGIVGLNN 132

Query: 187 IKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRN 246
           IKANDYCNVILQAL +VTPLRDYFL E NYA+VKRPPGDS FLLVQRFGELMRKLWNPRN
Sbjct: 133 IKANDYCNVILQALSNVTPLRDYFLDERNYAKVKRPPGDSVFLLVQRFGELMRKLWNPRN 192

Query: 247 FKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTF 306
           FK+HVSPHEMLQAVVLWS K+FQFTEQ DPIDFLSWFLN+LHRALNG K + SSIVYKTF
Sbjct: 193 FKAHVSPHEMLQAVVLWSGKKFQFTEQGDPIDFLSWFLNSLHRALNGKKSRHSSIVYKTF 252

Query: 307 LGSMKVKTRKIPPVELEEKVRQRLLLTD 334
           +GSM+VKTRKIPPVEL+EK R  LL TD
Sbjct: 253 MGSMRVKTRKIPPVELDEKQRYSLLCTD 280

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489070|ref|XP_001603642.2| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Nasonia vitripennis]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/328 (70%), Positives = 249/328 (75%), Gaps = 51/328 (15%)

Query: 6   VVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAE 65
           V  RLCPYLDTINRQ LDFDFEKLCSVSLSRINVYACLVCGKYFQGRG NT AYTHSVAE
Sbjct: 30  VAPRLCPYLDTINRQFLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGNNTHAYTHSVAE 89

Query: 66  SHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSR 125
            HHVFLNLHTLKFYCLPDNYEI+ +            LD I                   
Sbjct: 90  YHHVFLNLHTLKFYCLPDNYEIIDSS-----------LDDI------------------- 119

Query: 126 INVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLN 185
                                KYVLNPTF   QI QLD +DK+SRAIDG++Y PGIVG+N
Sbjct: 120 ---------------------KYVLNPTFDKHQIAQLDRNDKLSRAIDGSMYSPGIVGMN 158

Query: 186 NIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPR 245
           NIKANDYCNVILQAL HVTPLRDYFLRE NY++VKRPPGDSS+ LVQRFGELMRKLWNPR
Sbjct: 159 NIKANDYCNVILQALSHVTPLRDYFLRESNYSKVKRPPGDSSYQLVQRFGELMRKLWNPR 218

Query: 246 NFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKT 305
           NFK+HVSPHEMLQAVVLWS+K+FQFTEQ DP+DFLSWFLN LH ALNGTKKKDSSI+YKT
Sbjct: 219 NFKAHVSPHEMLQAVVLWSKKKFQFTEQGDPVDFLSWFLNALHIALNGTKKKDSSIIYKT 278

Query: 306 FLGSMKVKTRKIPPVELEEKVRQRLLLT 333
           FLG M++ TRKIPP+ELEE  R  LL T
Sbjct: 279 FLGHMRIYTRKIPPLELEESQRSELLNT 306

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235059|ref|XP_974413.2| PREDICTED: similar to ubiquitin specific protease 39 and snrnp assembly factor [Tribolium castaneum] gi|270003988|gb|EFA00436.1| hypothetical protein TcasGA2_TC003290 [Tribolium castaneum]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 256/334 (76%), Gaps = 52/334 (15%)

Query: 5   PVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVA 64
           P  +RLCPYLDTINRQ LDFDFEKLCSVSL+RINVYACLVCGKYFQGRGTNT AYTHSVA
Sbjct: 42  PQTHRLCPYLDTINRQYLDFDFEKLCSVSLTRINVYACLVCGKYFQGRGTNTHAYTHSVA 101

Query: 65  ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLS 124
           E HHVFLNLHTLKFYCLPDNYEI+                                    
Sbjct: 102 EGHHVFLNLHTLKFYCLPDNYEII------------------------------------ 125

Query: 125 RINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGL 184
                          DSSLDDIKY+LNPTFT   I  LD+S KMSRAIDG LY+PGIVGL
Sbjct: 126 ---------------DSSLDDIKYLLNPTFTEQHISTLDVSTKMSRAIDGLLYMPGIVGL 170

Query: 185 NNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNP 244
           NNIKANDYCNV+LQAL  V PLR+YFLRE NY+++KRPPGDSS+LLVQR+GELMRKLWNP
Sbjct: 171 NNIKANDYCNVVLQALSRVVPLRNYFLREENYSKIKRPPGDSSYLLVQRYGELMRKLWNP 230

Query: 245 RNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYK 304
           RNFK+HVSPHEMLQAVVLWS+K+FQ T Q DPIDFLSWFLN LHRALNG KKK+SSI+Y+
Sbjct: 231 RNFKAHVSPHEMLQAVVLWSKKRFQITAQGDPIDFLSWFLNALHRALNGNKKKNSSIIYQ 290

Query: 305 TFLGSMKVKTRKIPPVELEEKVRQRLLLTDNSYR 338
           +FLG+MK+ TRKIPP EL+++ ++R+LL+   Y+
Sbjct: 291 SFLGNMKIYTRKIPPTELDDR-QKRMLLSTPEYQ 323

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021530|ref|XP_003694616.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2 [Apis florea]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/325 (70%), Positives = 247/325 (76%), Gaps = 51/325 (15%)

Query: 9   RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHH 68
           RLCPYLDTINRQ LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNT AYTHSVAESHH
Sbjct: 40  RLCPYLDTINRQFLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTHAYTHSVAESHH 99

Query: 69  VFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINV 128
           VFLNLHTLKFYCLPDNYEI+ +            LD I                      
Sbjct: 100 VFLNLHTLKFYCLPDNYEIIDSS-----------LDDI---------------------- 126

Query: 129 YACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIK 188
                  KY  + + D             QI QLD SDK+SRAIDG+LY PGIVG+NNIK
Sbjct: 127 -------KYVLNPTFDKA-----------QIAQLDKSDKLSRAIDGSLYSPGIVGMNNIK 168

Query: 189 ANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK 248
           ANDYCNVILQAL HVTPLRD+FLRE NY+ VKRPPGDSS+LLVQRFGELMRKLWNPRNFK
Sbjct: 169 ANDYCNVILQALSHVTPLRDFFLRESNYSHVKRPPGDSSYLLVQRFGELMRKLWNPRNFK 228

Query: 249 SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLG 308
           +HVSPHEMLQAVVLWS+K+FQFTEQ DPIDFLSWFLN LH ALNGTKK+DSSIVYKTFLG
Sbjct: 229 AHVSPHEMLQAVVLWSKKRFQFTEQGDPIDFLSWFLNALHLALNGTKKRDSSIVYKTFLG 288

Query: 309 SMKVKTRKIPPVELEEKVRQRLLLT 333
            M++ TRKIPP+ELEE  R  LL T
Sbjct: 289 HMRIYTRKIPPLELEESQRSELLHT 313

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028251|gb|EGI68298.1| U4/U6.U5 tri-snRNP-associated protein 2 [Acromyrmex echinatior]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 247/325 (76%), Gaps = 51/325 (15%)

Query: 9   RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHH 68
           RLCPYLDTINRQ LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNT AYTHSVAESHH
Sbjct: 39  RLCPYLDTINRQFLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTHAYTHSVAESHH 98

Query: 69  VFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINV 128
           VFLNLHTLKFYCLPDNYEIV +            LD I                      
Sbjct: 99  VFLNLHTLKFYCLPDNYEIVDSS-----------LDDI---------------------- 125

Query: 129 YACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIK 188
                  KY  + + D +           QI QLD SDK SRAIDG++Y PGIVG+NNIK
Sbjct: 126 -------KYVLNPTFDKM-----------QIAQLDKSDKQSRAIDGSMYSPGIVGMNNIK 167

Query: 189 ANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK 248
           ANDYCNVILQAL HVTPLRD+FLRE NYA V+RPPGDSS+LLVQRFGELMRKLWNPRNFK
Sbjct: 168 ANDYCNVILQALSHVTPLRDFFLRESNYAHVRRPPGDSSYLLVQRFGELMRKLWNPRNFK 227

Query: 249 SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLG 308
           +HVSPHEMLQAVVLWS+K+FQFTEQ DP+DFLSWFLN LH ALNGTKK+DSSI+YKTFLG
Sbjct: 228 AHVSPHEMLQAVVLWSKKRFQFTEQGDPVDFLSWFLNALHLALNGTKKRDSSIIYKTFLG 287

Query: 309 SMKVKTRKIPPVELEEKVRQRLLLT 333
            M++ TRKIPP+ELEE  R  LL T
Sbjct: 288 HMRIYTRKIPPLELEESQRSELLHT 312

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782425|ref|XP_394503.4| PREDICTED: u4/U6.U5 tri-snRNP-associated protein 2-like [Apis mellifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/325 (70%), Positives = 247/325 (76%), Gaps = 51/325 (15%)

Query: 9   RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHH 68
           RLCPYLDTINRQ LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNT AYTHSVAESHH
Sbjct: 40  RLCPYLDTINRQFLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTHAYTHSVAESHH 99

Query: 69  VFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINV 128
           VFLNLHTLKFYCLPDNYEI+ +            LD I                      
Sbjct: 100 VFLNLHTLKFYCLPDNYEIIDSS-----------LDDI---------------------- 126

Query: 129 YACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIK 188
                  KY  + + D             QI QLD SDK+SRAIDG+LY PGIVG+NNIK
Sbjct: 127 -------KYVLNPTFDKA-----------QIGQLDKSDKLSRAIDGSLYSPGIVGMNNIK 168

Query: 189 ANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK 248
           ANDYCNVILQAL HVTPLRD+FLRE NY+ VKRPPGDSS+LLVQRFGELMRKLWNPRNFK
Sbjct: 169 ANDYCNVILQALSHVTPLRDFFLRESNYSHVKRPPGDSSYLLVQRFGELMRKLWNPRNFK 228

Query: 249 SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLG 308
           +HVSPHEMLQAVVLWS+K+FQFTEQ DPIDFLSWFLN LH ALNGTKK+DSSIVYKTFLG
Sbjct: 229 AHVSPHEMLQAVVLWSKKRFQFTEQGDPIDFLSWFLNALHLALNGTKKRDSSIVYKTFLG 288

Query: 309 SMKVKTRKIPPVELEEKVRQRLLLT 333
            M++ TRKIPP+ELEE  R  LL T
Sbjct: 289 HMRIYTRKIPPLELEESQRSELLHT 313

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415794|ref|XP_003490754.1| PREDICTED: LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 2-like [Bombus impatiens]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 247/325 (76%), Gaps = 51/325 (15%)

Query: 9   RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHH 68
           RLCPYLDTINRQ LDFDFEKLCSVSLS+INVYACLVCGKYFQGRGTNT AYTHSVAESHH
Sbjct: 40  RLCPYLDTINRQFLDFDFEKLCSVSLSKINVYACLVCGKYFQGRGTNTHAYTHSVAESHH 99

Query: 69  VFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINV 128
           VFLNLHTLKFYCLPDNYEI+ +            LD I                      
Sbjct: 100 VFLNLHTLKFYCLPDNYEIIDSS-----------LDDI---------------------- 126

Query: 129 YACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIK 188
                  KY  + + D             QI QLD SDK+SRAIDG+LY PGIVG+NNIK
Sbjct: 127 -------KYVLNPTFDKA-----------QIAQLDKSDKLSRAIDGSLYSPGIVGMNNIK 168

Query: 189 ANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK 248
           ANDYCNVILQAL HVTPLRD+FLRE NY+ VKRPPGDSS+LLVQRFGELMRKLWNPRNFK
Sbjct: 169 ANDYCNVILQALSHVTPLRDFFLRESNYSHVKRPPGDSSYLLVQRFGELMRKLWNPRNFK 228

Query: 249 SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLG 308
           +HVSPHEMLQAVVLWS+K+FQFTEQ DPIDFLSWFLN LH ALNGTKK+DSSIVYKTFLG
Sbjct: 229 AHVSPHEMLQAVVLWSKKRFQFTEQGDPIDFLSWFLNALHLALNGTKKRDSSIVYKTFLG 288

Query: 309 SMKVKTRKIPPVELEEKVRQRLLLT 333
            M++ TRKIPP+EL+E  R  LL T
Sbjct: 289 HMRIYTRKIPPLELDESQRSELLHT 313

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713360|ref|XP_003395212.1| PREDICTED: u4/U6.U5 tri-snRNP-associated protein 2-like [Bombus terrestris]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/325 (70%), Positives = 247/325 (76%), Gaps = 51/325 (15%)

Query: 9   RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHH 68
           RLCPYLDTINRQ LDFDFEKLCSVSLS+INVYACLVCGKYFQGRGTNT AYTHSVAESHH
Sbjct: 40  RLCPYLDTINRQFLDFDFEKLCSVSLSKINVYACLVCGKYFQGRGTNTHAYTHSVAESHH 99

Query: 69  VFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINV 128
           VFLNLHTLKFYCLPDNYEI+ +            LD I                      
Sbjct: 100 VFLNLHTLKFYCLPDNYEIIDSS-----------LDDI---------------------- 126

Query: 129 YACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIK 188
                  KY  + + D             QI QLD SDK+SRAIDG+LY PGIVG+NNIK
Sbjct: 127 -------KYVLNPTFDKA-----------QIAQLDKSDKLSRAIDGSLYSPGIVGMNNIK 168

Query: 189 ANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK 248
           ANDYCNVILQAL HVTPLRD+FLRE NY+ VKRPPGDSS+LLVQRFGELMRKLWNPRNFK
Sbjct: 169 ANDYCNVILQALSHVTPLRDFFLRESNYSHVKRPPGDSSYLLVQRFGELMRKLWNPRNFK 228

Query: 249 SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLG 308
           +HVSPHEMLQAVVLWS+K+FQFTEQ DPIDFLSWFLN LH ALNGTKK+DSSIVYKTFLG
Sbjct: 229 AHVSPHEMLQAVVLWSKKRFQFTEQGDPIDFLSWFLNALHLALNGTKKRDSSIVYKTFLG 288

Query: 309 SMKVKTRKIPPVELEEKVRQRLLLT 333
            M++ TRKIPP+EL+E  R  LL T
Sbjct: 289 HMRIYTRKIPPLELDESQRSELLHT 313

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862535|ref|XP_003706739.1| PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2 [Megachile rotundata]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/325 (69%), Positives = 247/325 (76%), Gaps = 51/325 (15%)

Query: 9   RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHH 68
           RLCPYLDTINRQ LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNT AYTHSVAESHH
Sbjct: 40  RLCPYLDTINRQFLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTHAYTHSVAESHH 99

Query: 69  VFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINV 128
           VFLNLHTLKFYCLPDNYEI+ +            LD I                      
Sbjct: 100 VFLNLHTLKFYCLPDNYEIIDSS-----------LDDI---------------------- 126

Query: 129 YACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIK 188
                  KY  + + D             QI QLD SDK+SRAIDG+LY PGIVG+NNIK
Sbjct: 127 -------KYVLNPTFDKA-----------QIAQLDKSDKLSRAIDGSLYSPGIVGMNNIK 168

Query: 189 ANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFK 248
           ANDYCNVILQAL HVTPLRD+FLRE NY+ VKRPPGDSS+LLVQRFGELMRKLWNPRNFK
Sbjct: 169 ANDYCNVILQALSHVTPLRDFFLRESNYSHVKRPPGDSSYLLVQRFGELMRKLWNPRNFK 228

Query: 249 SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLG 308
           +HVSPHEMLQAVVLWS+K+FQFTEQ DPIDFLSWF+N LH ALNGTKK+DS+IVYKTFLG
Sbjct: 229 AHVSPHEMLQAVVLWSKKRFQFTEQGDPIDFLSWFMNALHLALNGTKKRDSTIVYKTFLG 288

Query: 309 SMKVKTRKIPPVELEEKVRQRLLLT 333
            M++ TRKIPP+EL+E  R  LL T
Sbjct: 289 HMRIYTRKIPPLELDESQRSELLHT 313

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
UNIPROTKB|A6QQX8	565	USP39 "Uncharacterized protein	0.630	0.376	0.635	3.5e-105
UNIPROTKB|E2QZF6	561	USP39 "Uncharacterized protein	0.630	0.379	0.635	3.5e-105
UNIPROTKB|B9A018	536	USP39 "U4/U6.U5 tri-snRNP-asso	0.630	0.397	0.635	3.5e-105
UNIPROTKB|G5E9H0	488	USP39 "U4/U6.U5 tri-snRNP-asso	0.630	0.436	0.635	3.5e-105
UNIPROTKB|Q53GS9	565	USP39 "U4/U6.U5 tri-snRNP-asso	0.630	0.376	0.635	3.5e-105
MGI|MGI:107622	564	Usp39 "ubiquitin specific pept	0.630	0.377	0.635	3.5e-105
RGD|1308103	564	Usp39 "ubiquitin specific pept	0.621	0.372	0.639	7.3e-105
UNIPROTKB|B8ZZD1	502	USP39 "U4/U6.U5 tri-snRNP-asso	0.603	0.406	0.658	1.2e-104
ZFIN|ZDB-GENE-030131-966	497	usp39 "ubiquitin specific pept	0.627	0.426	0.630	5.1e-104
FB|FBgn0030969	494	CG7288 [Drosophila melanogaste	0.630	0.431	0.697	2.6e-98

UNIPROTKB|A6QQX8 USP39 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 690 (248.0 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
 Identities = 136/214 (63%), Positives = 159/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   165 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 223

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   224 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 283

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   284 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 343

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             IV   F GSM++ T+K+P  +L  + +++LL  D
Sbjct:   344 IVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHND 377

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E2QZF6 USP39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 690 (248.0 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
 Identities = 136/214 (63%), Positives = 159/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   161 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 219

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   220 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 279

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   280 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 339

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             IV   F GSM++ T+K+P  +L  + +++LL  D
Sbjct:   340 IVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHND 373

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|B9A018 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 690 (248.0 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
 Identities = 136/214 (63%), Positives = 159/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   165 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 223

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   224 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 283

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   284 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 343

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             IV   F GSM++ T+K+P  +L  + +++LL  D
Sbjct:   344 IVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHND 377

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G5E9H0 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 690 (248.0 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
 Identities = 136/214 (63%), Positives = 159/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   165 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 223

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   224 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 283

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   284 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 343

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             IV   F GSM++ T+K+P  +L  + +++LL  D
Sbjct:   344 IVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHND 377

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q53GS9 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 690 (248.0 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
 Identities = 136/214 (63%), Positives = 159/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   165 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 223

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   224 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 283

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   284 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 343

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             IV   F GSM++ T+K+P  +L  + +++LL  D
Sbjct:   344 IVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHND 377

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008380 "RNA splicing" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0000245 "spliceosomal complex assembly" evidence=TAS

MGI|MGI:107622 Usp39 "ubiquitin specific peptidase 39" [Mus musculus (taxid:10090)]

 Score = 690 (248.0 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
 Identities = 136/214 (63%), Positives = 159/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   164 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 222

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   223 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 282

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   283 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 342

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             IV   F GSM++ T+K+P  +L  + +++LL  D
Sbjct:   343 IVNDVFQGSMRIFTKKLPHPDLPAEEKEQLLHND 376

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1308103 Usp39 "ubiquitin specific peptidase 39" [Rattus norvegicus (taxid:10116)]

 Score = 687 (246.9 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
 Identities = 135/211 (63%), Positives = 158/211 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   164 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 222

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   223 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 282

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   283 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 342

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLL 331
             IV   F GSM++ T+K+P  +L  + +++LL
Sbjct:   343 IVNDVFQGSMRIFTKKLPHPDLPAEEKEQLL 373

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B8ZZD1 USP39 "U4/U6.U5 tri-snRNP-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 685 (246.2 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
 Identities = 135/205 (65%), Positives = 154/205 (75%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT  QI  LD   K+SRA DGT YLPG
Sbjct:   165 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPG 223

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY N +LQAL +V PLR+YFL E NY  +KRPPGD  FLLVQRFGELMRK
Sbjct:   224 IVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRK 283

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK  +
Sbjct:   284 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKT 343

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEK 325
             IV   F GSM++ T+K+P  +LE K
Sbjct:   344 IVTDVFQGSMRIFTKKLPHPDLEYK 368

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-966 usp39 "ubiquitin specific peptidase 39" [Danio rerio (taxid:7955)]

 Score = 678 (243.7 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 135/214 (63%), Positives = 160/214 (74%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPG 180
             ++L  +  Y CL       DSSL+DI YVL PTFT   I  LD   K+ RA DGT YLPG
Sbjct:    96 LNLHTLKFY-CLPDNYEIIDSSLEDITYVLKPTFTKQHISGLDKQGKLYRAYDGTTYLPG 154

Query:   181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK 240
             IVGLNNIKANDY NV+LQAL +V PLR+YFL E NY  ++RPPGD  FLLVQRFGELMRK
Sbjct:   155 IVGLNNIKANDYANVVLQALSNVPPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRK 214

Query:   241 LWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
             LWNPRNFK+HVSPHEMLQAVVL S+K FQ T+Q D +DFLSWFLN LH AL GTKKK SS
Sbjct:   215 LWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDAVDFLSWFLNALHGALGGTKKK-SS 273

Query:   301 IVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             I+ K F GSM++ ++K+P  +L  + ++ LLL +
Sbjct:   274 IITKAFQGSMRIFSKKLPHPDLPPEEKEALLLKE 307

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0048855 "adenohypophysis morphogenesis" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0030969 CG7288 [Drosophila melanogaster (taxid:7227)]

 Score = 781 (280.0 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
 Identities = 150/215 (69%), Positives = 172/215 (80%)

Query:   121 VSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLD-LSDKMSRAIDGTLYLP 179
             ++L  +  Y CL       DSSLDDIKYVLNPTFT  +I +LD L  K SR +DG LYLP
Sbjct:    98 LNLHTLRFY-CLPDNYEIIDSSLDDIKYVLNPTFTRQEISKLDQLQPKHSRTVDGVLYLP 156

Query:   180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
             G+VGLNNIKANDYCNV+L AL HV PLRDYFL++ +YA V RPPGDS F LVQRFGELMR
Sbjct:   157 GVVGLNNIKANDYCNVVLHALSHVGPLRDYFLQKQSYAHVVRPPGDSVFTLVQRFGELMR 216

Query:   240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
             K+WNPRNFKSHVSPHEMLQAVVLWS K+FQ TEQ DPIDFLSWFLNTLHRAL G K  +S
Sbjct:   217 KMWNPRNFKSHVSPHEMLQAVVLWSSKRFQITEQGDPIDFLSWFLNTLHRALKGNKHPNS 276

Query:   300 SIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTD 334
             SI+YK FLG MK+ TRK+PPVEL++  + +LL T+
Sbjct:   277 SILYKIFLGEMKIYTRKMPPVELDDAAKAQLLATE 311

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q53GS9	SNUT2_HUMAN	No assigned EC number	0.6055	0.8165	0.4884	yes	N/A
Q5R761	SNUT2_PONAB	No assigned EC number	0.5993	0.8165	0.4884	yes	N/A
Q3TIX9	SNUT2_MOUSE	No assigned EC number	0.6055	0.8165	0.4893	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	338
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	1e-146
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	3e-22
pfam02148	63	pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas	1e-17
smart00290	50	smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H	3e-10
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	1e-06
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	1e-06
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	9e-05

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score =  418 bits (1076), Expect = e-146
 Identities = 172/323 (53%), Positives = 209/323 (64%), Gaps = 55/323 (17%)

Query: 12  PYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFL 71
           PYLDTINR +LDFDFEK+CSVSLS +NVYACLVCGKYFQGRG  + AYTHS+ ++HHVFL
Sbjct: 1   PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFL 60

Query: 72  NLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYAC 131
           NL TLKFYCLPDNYEI+                                           
Sbjct: 61  NLETLKFYCLPDNYEII------------------------------------------- 77

Query: 132 LVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKAND 191
                   DSSLDDIKYVLNPT+T +QI  LD   K+SR +DG  YLPG VGLNNIK ND
Sbjct: 78  --------DSSLDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNND 129

Query: 192 YCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHV 251
           Y NVI+QAL HV P+R++FL   NY  +K         LV+R  EL+RK+WNPRNFK HV
Sbjct: 130 YANVIIQALSHVKPIRNFFLLYENYENIKDRKS----ELVKRLSELIRKIWNPRNFKGHV 185

Query: 252 SPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMK 311
           SPHE+LQAV   S+K+F  TEQSDP++FLSW LNTLH+ L G+KK +SSI++  F G ++
Sbjct: 186 SPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQ 245

Query: 312 VKTRKIPPVELEEKVRQRLLLTD 334
           ++T+KI P   EE  + +     
Sbjct: 246 IETQKIKPHAEEEGSKDKFFKDS 268

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 94.8 bits (236), Expect = 3e-22
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
            G  GL N+    Y N +LQAL  + PLRDY L+  +         +    L +   +L 
Sbjct: 1   EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQ---LPRALADLF 57

Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK- 297
             L +P +  + VSP   LQA+      QF    Q D  +FL + L+ LH  LN  KK+ 
Sbjct: 58  HALQSPNSKNASVSPKNFLQALG-KISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRK 116

Query: 298 -----DSSIVYKTFLGSMK 311
                + S++ K F G ++
Sbjct: 117 SHAAENESLITKLFQGQLE 135

Length = 313

>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 30 CSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEI 87
          CS   S  N++ CL CG    GR +N  A  H     H + ++L T + +C   +  +
Sbjct: 1  CSECGSTENLWLCLTCGHVGCGRYSNGHALKHYEETGHPLAVSLETGRVWCYACDDYV 58

Length = 63

>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 30 CSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKF 78
          CSV  +  N++ CL CG+   GR  N  A  H     H + + L T + 
Sbjct: 2  CSVCGTIENLWLCLTCGQVGCGRYQNGHALEHFEETGHPLVVKLGTQRV 50

Length = 50

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 12/125 (9%)

Query: 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFL-----REINYARVKRPPGDSSFLLVQ 232
             G  GL N+    Y N  LQ L H   LRDYFL       IN        G     +  
Sbjct: 262 EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGS----VAS 317

Query: 233 RFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
            + +L+++L++      H       +  +    ++F   +Q D  +F+++ L+ LH  LN
Sbjct: 318 AYADLIKQLYDGNL---HAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLN 374

Query: 293 GTKKK 297
              KK
Sbjct: 375 RIIKK 379

Length = 823

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW 242
           GL N+ A  + NVILQAL H   LR+YFL + +         +S           M +++
Sbjct: 2   GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSC------LSCAMDEIF 55

Query: 243 NPRNFKSHVSPHEMLQAVVLW--SRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSS 300
               +    SP+  +  + L     +      Q D  +F  + L+ LH    G K + + 
Sbjct: 56  QEFYYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAND 115

Query: 301 ------IVYKTFLGSMK 311
                 I+++TF GS++
Sbjct: 116 ESHCNCIIHQTFSGSLQ 132

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW 242
           GL N+    + N +LQ L H  PL +Y L    +++     G      ++    + R L 
Sbjct: 3   GLQNLGNTCFLNSVLQCLTHTPPLANYLLSR-EHSKDCCNEGFCMMCALEAH--VERALA 59

Query: 243 NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRA-LNGTKK----- 296
           +     +       L+ +     K F+   Q D  +FL + L+ + +A L+  KK     
Sbjct: 60  SSGPGSAPRIFSSNLKQI----SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVD 115

Query: 297 ---KDSSIVYKTFLGSMK 311
              +++++V + F G ++
Sbjct: 116 PSSQETTLVQQIFGGYLR 133

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	100.0
KOG0944|consensus	763		100.0
KOG2026|consensus	442		100.0
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	100.0
KOG1873|consensus	877		100.0
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.92
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.92
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.92
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.92
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.91
KOG1865|consensus	545		99.9
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.9
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.89
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.89
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.89
KOG1867|consensus	492		99.86
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.86
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.85
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.84
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.84
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.82
PF02148	63	zf-UBP: Zn-finger in ubiquitin-hydrolases and othe	99.8
KOG1868|consensus	653		99.67
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.67
KOG1863|consensus	1093		99.58
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.55
KOG1870|consensus	842		99.52
KOG0804|consensus	493		99.37
KOG1871|consensus	420		99.34
smart00290	50	ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like	99.31
KOG1866|consensus	944		99.31
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.28
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.28
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.27
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.24
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.15
KOG1872|consensus	473		99.02
KOG1864|consensus	587		98.17
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	98.07
KOG4598|consensus	1203		97.88
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	97.38
KOG1864|consensus	587		96.92
KOG2026|consensus	442		96.58
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	94.99
KOG1275|consensus	1118		93.56
PF09416	152	UPF1_Zn_bind: RNA helicase (UPF2 interacting domai	90.4
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	89.37

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=100.00  E-value=7.3e-59  Score=458.41  Aligned_cols=255  Identities=67%  Similarity=1.144  Sum_probs=227.2

Q ss_pred             CCcccccccccCCCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCCeEEeccc
Q psy9878          12 PYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTV   91 (338)
Q Consensus        12 ~~l~~~~~~~~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~~~~   91 (338)
                      |||++|+|.++|||+||.|++|.++.|+|+||+||+++|||+.++||+.|+.+++|+++|++.|++||||+|+++|+   
T Consensus         1 ~yl~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~---   77 (440)
T cd02669           1 PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEII---   77 (440)
T ss_pred             CchhhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEe---
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999997   


Q ss_pred             CCccccccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhhcCcccccccc
Q psy9878          92 AGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRA  171 (338)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~  171 (338)
                                                                      +.+++++++.+.|+++++.+..++.+..+.++
T Consensus        78 ------------------------------------------------d~~l~~i~~~~~~~~~~~~i~~~~~~~~~~~~  109 (440)
T cd02669          78 ------------------------------------------------DSSLDDIKYVLNPTYTKEQISDLDRDPKLSRD  109 (440)
T ss_pred             ------------------------------------------------CccHHHHHHHhcCCCCHHHHHHhhhccccccc
Confidence                                                            34455677788888888888877766665567


Q ss_pred             cCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCcc
Q psy9878         172 IDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHV  251 (338)
Q Consensus       172 ~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~i  251 (338)
                      +++..+.+|++||.|+|||||||||||+|+|+|+||++|+...+....+    ....+++++|+.+++++|++..++.++
T Consensus       110 ~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~----~~~~~l~~~l~~l~~kl~~~~~~~~~i  185 (440)
T cd02669         110 LDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIK----DRKSELVKRLSELIRKIWNPRNFKGHV  185 (440)
T ss_pred             cCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhcccccccc----CCCcHHHHHHHHHHHHHhccccCCCcc
Confidence            7888999999999999999999999999999999999999865432211    123579999999999999987767899


Q ss_pred             CHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCCC
Q psy9878         252 SPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVE  321 (338)
Q Consensus       252 sP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~~  321 (338)
                      +|.+|++.++....+.|++++||||||||++|||.||+++.+..+...++|+++|+|++++++..+....
T Consensus       186 sP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F~G~l~~~~~c~~~~~  255 (440)
T cd02669         186 SPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHA  255 (440)
T ss_pred             CHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceeccCceEEEEEEeecccc
Confidence            9999999999875678999999999999999999999999876667889999999999999988776543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=100.00  E-value=2.6e-43  Score=344.06  Aligned_cols=237  Identities=20%  Similarity=0.309  Sum_probs=180.3

Q ss_pred             cccccccccCCCcccc-ccccCCCCCeeEEeeeCceecccC------CchhHhhhhhhcCccEEEeecC-----CeEEEe
Q psy9878          14 LDTINRQLLDFDFEKL-CSVSLSRINVYACLVCGKYFQGRG------TNTFAYTHSVAESHHVFLNLHT-----LKFYCL   81 (338)
Q Consensus        14 l~~~~~~~~~~~~~k~-C~~c~~~~~lw~CL~Cg~~~CGr~------~~~Ha~~H~~~~~H~l~v~l~t-----~~v~Cy   81 (338)
                      |.+++.++.. -...| |+.|+.+.|||+||+||.++|||.      .|+||+.||.+++|||||+|.|     .+||||
T Consensus       166 l~q~dng~~~-~~~gwkCs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY  244 (763)
T KOG0944|consen  166 LSQIDNGKRI-PPSGWKCSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCY  244 (763)
T ss_pred             hhhcccCccc-CCCcceecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeee
Confidence            4455554421 12333 999999999999999999999994      3899999999999999999976     799999


Q ss_pred             cCCeEEecccCCccccccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhh
Q psy9878          82 PDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQ  161 (338)
Q Consensus        82 ~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~  161 (338)
                      .||+.|.++              .+++++.+|      +|++.          +.-.+++++.+++...+-.|..+.++.
T Consensus       245 ~cDd~v~dP--------------nl~~hl~hf------GId~~----------~m~kteksl~elel~~N~i~Ew~~~~e  294 (763)
T KOG0944|consen  245 DCDDEVRDP--------------NLESHLSHF------GIDMA----------KMDKTEKSLVELELDQNRIWEWEALEE  294 (763)
T ss_pred             cccccccCc--------------cHHHHHHhc------CccHH----------HhccchhHHHHHHHHhhcccCceeecc
Confidence            999999853              356777777      33330          111234555555555555555444332


Q ss_pred             cCcccccccccCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHH
Q psy9878         162 LDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKL  241 (338)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l  241 (338)
                      -..      . -.+.+.||++||+|+||+||||||||+|+.+|.|...++...  ......+.+...+|.++|.+|...|
T Consensus       295 sg~------~-l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~--~~f~~~~~~P~ndf~cQ~~Kl~~gm  365 (763)
T KOG0944|consen  295 SGA------P-LEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQE--RIFNCYPKDPTNDFNCQLAKLLHGM  365 (763)
T ss_pred             CCC------c-cccccCCCccceeecCcchhHHHHHHHheecccHHHhhcccc--ceeecCCCCcchhHHHHHHHHHHHh
Confidence            111      1 123678999999999999999999999999999999887652  1122233344688999999999999


Q ss_pred             hCCCCCC--------CccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy9878         242 WNPRNFK--------SHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRAL  291 (338)
Q Consensus       242 ~~~~~~~--------~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~  291 (338)
                      .++..-+        ..|+|..|...+|+. +|.|+..+||||+|||++||+.|.+..
T Consensus       366 ~sgkys~p~~~~~~qngIsP~mFK~~igkn-HpeFst~~QQDA~EFllfLl~ki~~n~  422 (763)
T KOG0944|consen  366 LSGKYSKPLMDPSNQNGISPLMFKALIGKN-HPEFSTNRQQDAQEFLLFLLEKIRENS  422 (763)
T ss_pred             hcCcccCccCCccccCCcCHHHHHHHHcCC-CccccchhhhhHHHHHHHHHHHHhhcc
Confidence            9876333        479999999999997 999999999999999999999998753

>KOG2026|consensus

Probab=100.00  E-value=3.6e-41  Score=311.21  Aligned_cols=253  Identities=64%  Similarity=1.032  Sum_probs=231.0

Q ss_pred             CCCCCCcccccccccCCCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecC-CeEEEecCCeE
Q psy9878           8 NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHT-LKFYCLPDNYE   86 (338)
Q Consensus         8 ~~~c~~l~~~~~~~~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t-~~v~Cy~Cd~~   86 (338)
                      .+.|++|+++++.+++||++|.|++..++-++|+||.||.++.||++++||+.|+.+++|.+++|+.| +..|+.+.+++
T Consensus        10 ~~~~~yldtv~r~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~e   89 (442)
T KOG2026|consen   10 EPNYAYLETVVRRVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYE   89 (442)
T ss_pred             CcchHhhhhhhhhhccccCCCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecchhcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999 88888887776


Q ss_pred             EecccCCccccccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhhcCc-c
Q psy9878          87 IVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDL-S  165 (338)
Q Consensus        87 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~-~  165 (338)
                      +.                                                   +.+.+++++.+.|++++..+..++. +
T Consensus        90 i~---------------------------------------------------d~s~~~ikhslkptftr~~cp~lD~~n  118 (442)
T KOG2026|consen   90 ID---------------------------------------------------DPSLGDIKHSLKPTFTKTDCPNLDKVN  118 (442)
T ss_pred             cc---------------------------------------------------Cchhhhhhccccceeehhhcccccccc
Confidence            64                                                   4555667888999999988887776 7


Q ss_pred             cccccccCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCC
Q psy9878         166 DKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPR  245 (338)
Q Consensus       166 ~~~~~~~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~  245 (338)
                      ++++.++++..|.+|++||.|+-++-|.|++||+|++.+++|+|++....       .++....++..|..+++++|+++
T Consensus       119 r~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n-------~~d~~~~lv~rl~~l~rklw~~r  191 (442)
T KOG2026|consen  119 RKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN-------YFDNLTELVQRLGELIRKLWNPR  191 (442)
T ss_pred             hhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc-------ccchhHHHHHHHHHHHHHhcChh
Confidence            78889999999999999999999999999999999999999999998653       23345779999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCC
Q psy9878         246 NFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPP  319 (338)
Q Consensus       246 ~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~  319 (338)
                      .+++++||.++++++...+...|...+|-|+.||+.||||.||..+.+.+ ...+||++.|+|.+++.++....
T Consensus       192 ~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k-~~~SIi~~~fqG~~ri~k~~~~~  264 (442)
T KOG2026|consen  192 NFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK-KASSIIHKSFQGEVRIVKEKQGE  264 (442)
T ss_pred             hhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC-CchhHhhHhhcceEEeeeecccc
Confidence            99999999999999999889999999999999999999999999998776 56799999999999999988873

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-39  Score=309.07  Aligned_cols=257  Identities=19%  Similarity=0.248  Sum_probs=181.4

Q ss_pred             CCCCCCCcccccccc---cCCCccccccccCCCCCeeEEeeeCceecccCC-----chhHhhhhhhcCccEEEeecC---
Q psy9878           7 VNRLCPYLDTINRQL---LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGT-----NTFAYTHSVAESHHVFLNLHT---   75 (338)
Q Consensus         7 ~~~~c~~l~~~~~~~---~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~-----~~Ha~~H~~~~~H~l~v~l~t---   75 (338)
                      +...|||.-......   -+++..+ |+.|+...|||+||+||+++|||-+     ++||+.||.+++||+||++.+   
T Consensus       151 E~~tC~H~~n~~~~s~~~~ni~~~~-Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~  229 (749)
T COG5207         151 EEVTCVHGCNEGPSSIEMGNIGGLK-CSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSK  229 (749)
T ss_pred             hcccccccCCCCCCcccccccCCce-eccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEcccccc
Confidence            456899988444332   2456555 9999999999999999999999943     899999999999999999965   


Q ss_pred             --CeEEEecCCeEEecccCCccccccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCC
Q psy9878          76 --LKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPT  153 (338)
Q Consensus        76 --~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  153 (338)
                        .+||||.||+++..+.           --.+..++.+|      ++++..          ....++++.+++..-+..
T Consensus       230 ~~~diyCY~CD~e~R~~~-----------n~n~~s~~~~f------GinIa~----------~~~~Eksl~~lq~eqn~n  282 (749)
T COG5207         230 EDCDIYCYLCDSEIRSRY-----------NSNENSVTIDF------GINIAD----------GKTEEKSLRKLQSEQNAN  282 (749)
T ss_pred             ccccEEEEecCcccccCC-----------cccccceeeee------ccchhh----------ccchHHHHHHHHHhhhcC
Confidence              7999999999975321           11234455555      233210          111245555554443444


Q ss_pred             CChHHhhhcCcccccccccCCCcccCC-ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhh--hccCCCCCCChhHH
Q psy9878         154 FTTDQIKQLDLSDKMSRAIDGTLYLPG-IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINY--ARVKRPPGDSSFLL  230 (338)
Q Consensus       154 ~~~~~i~~~~~~~~~~~~~~~~~~~~g-~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~--~~~~~~~~~~~~~l  230 (338)
                      |......+.+.        ......|+ ++||.|+||+||+|||||+|+....+..-+....+.  ..+..|    ..+|
T Consensus       283 w~F~~~~~~~~--------sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P----~~~l  350 (749)
T COG5207         283 WEFLEKKRAPE--------SKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP----LECL  350 (749)
T ss_pred             cchhccccCch--------hhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC----chhH
Confidence            43222211111        11222344 799999999999999999999988777665554433  223333    3789


Q ss_pred             HHHHHHHHHHHhCCC--CCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccce
Q psy9878         231 VQRFGELMRKLWNPR--NFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFL  307 (338)
Q Consensus       231 ~~~l~~l~~~l~~~~--~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~  307 (338)
                      -|++.+|+.+|....  .+...++|..|...+|+. ++.|...+||||+|||.|||+.|.+......   .+.|.++|.
T Consensus       351 ~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~-h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~---~~~It~lf~  425 (749)
T COG5207         351 FCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQD-HPEFGKFAQQDAHEFLLFLLEKIRKGERSYL---IPPITSLFE  425 (749)
T ss_pred             HHHHHHHHhhccCCCCccccCCcChhhHHHHHcCC-chhhhhhhhhhHHHHHHHHHHHHhhccchhc---CCCcchhhh
Confidence            999999999998743  456789999999999997 9999999999999999999999998433222   244556665

>KOG1873|consensus

Probab=100.00  E-value=1.6e-35  Score=292.20  Aligned_cols=235  Identities=20%  Similarity=0.277  Sum_probs=156.2

Q ss_pred             CCCeeEEeeeCceeccc-CCchhHhhhhhh---cCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHHhhhc
Q psy9878          36 RINVYACLVCGKYFQGR-GTNTFAYTHSVA---ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLL  111 (338)
Q Consensus        36 ~~~lw~CL~Cg~~~CGr-~~~~Ha~~H~~~---~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~~  111 (338)
                      ...+|+||.||+++||| +...||++||+.   +.|+|+|++.++.+|||.||..+..-   .....+.+..|.+.++..
T Consensus        90 ~~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~~~---~~kn~l~e~vd~l~k~a~  166 (877)
T KOG1873|consen   90 DNAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKLVPF---DKKNLLGEKVDLLIKVAS  166 (877)
T ss_pred             ccceeeecccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchhccc---cchhHHHHHHHHHHHHHh
Confidence            45799999999999999 778999999995   58999999999999999999944311   111234445555544432


Q ss_pred             cccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhhcCcccccccccCCCcccCCccccccCCChh
Q psy9878         112 DFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKAND  191 (338)
Q Consensus       112 ~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTC  191 (338)
                      ...      .+.                ....      +...+..+...   +..+....--...+.+-++||.||||||
T Consensus       167 ~~~------~~~----------------spn~------~~~s~~~ek~e---~~ski~~ggie~~~~~~VrGL~NLGNTC  215 (877)
T KOG1873|consen  167 KTS------LTR----------------SPNT------LKISSEEEKLE---KGSKIKKGGIEKRRGYIVRGLTNLGNTC  215 (877)
T ss_pred             ccc------ccc----------------CCCc------ccchhhHHhhh---hcccccccCccccccccccccccccchh
Confidence            210      000                0000      00000000000   0000001101234456788999999999


Q ss_pred             HHHHHHHHHhcChHHHHHHhchhhhhc--cCCCCC-----------CChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHH
Q psy9878         192 YCNVILQALCHVTPLRDYFLREINYAR--VKRPPG-----------DSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ  258 (338)
Q Consensus       192 y~NsvLQ~L~~~~~~r~~ll~~~~~~~--~~~~~~-----------~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~  258 (338)
                      |+|||||.|+.+|.||+.|........  .-.++.           ...+++.-+|.. +.+|..+.  +++++|+.|+.
T Consensus       216 FFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~--ksv~~Pr~lF~  292 (877)
T KOG1873|consen  216 FFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETT--KSVITPRTLFG  292 (877)
T ss_pred             hHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhcc--CCccCHHHHHH
Confidence            999999999999999999987554310  001111           123556667777 55565555  78999999999


Q ss_pred             HHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHH-hcccCCCccccccccceeEEEE
Q psy9878         259 AVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRA-LNGTKKKDSSIVYKTFLGSMKV  312 (338)
Q Consensus       259 ~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e-~~~~~~~~~~ii~~iF~G~l~s  312 (338)
                      .++.+ +|+|++|.||||||+|++|||.|..| ....++    .|...|+|...+
T Consensus       293 ~~C~k-~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk----~Il~~fG~~t~~  342 (877)
T KOG1873|consen  293 QFCSK-APQFRGYDQHDSHELLRCLLDSLRSEESRRRKK----NILSNFGGETSS  342 (877)
T ss_pred             HHHHh-CCcccccccccHHHHHHHHHHhhhHHHHHHHHH----hHHHhhCccccc
Confidence            99998 99999999999999999999999865 333222    266777776554

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8e-26  Score=220.36  Aligned_cols=132  Identities=27%  Similarity=0.462  Sum_probs=117.7

Q ss_pred             CCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCC-CCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       179 ~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      .|.+||+|+||||||||.||||.|++.||+||++..+...++. ++....+.++.+++.|++.++.++  -.+++|..|.
T Consensus       263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~--~haf~Ps~fK  340 (823)
T COG5560         263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN--LHAFTPSGFK  340 (823)
T ss_pred             ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc--ccccChHHHH
Confidence            3889999999999999999999999999999999887766654 233356789999999999999888  6899999999


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC------------------------------CCccccccccce
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK------------------------------KKDSSIVYKTFL  307 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~------------------------------~~~~~ii~~iF~  307 (338)
                      ..|+.. +..|+||.|||+|||+.+|||.||+.++++.                              +++.++|.++|+
T Consensus       341 ~tIG~f-n~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFq  419 (823)
T COG5560         341 KTIGSF-NEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQ  419 (823)
T ss_pred             HHHhhh-HHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            999986 9999999999999999999999999998542                              268899999999


Q ss_pred             eEEEEE
Q psy9878         308 GSMKVK  313 (338)
Q Consensus       308 G~l~s~  313 (338)
                      |-++|+
T Consensus       420 gmyKST  425 (823)
T COG5560         420 GMYKST  425 (823)
T ss_pred             HHhhce
Confidence            999986

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.92  E-value=3.4e-25  Score=209.48  Aligned_cols=132  Identities=17%  Similarity=0.146  Sum_probs=107.0

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCC------------CCCc
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRN------------FKSH  250 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~------------~~~~  250 (338)
                      ||.|+|||||||||||+|+++|+||++++...+...  ........++.++|++++..|++++.            ++.+
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~   78 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG   78 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence            899999999999999999999999999987432211  11122346799999999999987542            2457


Q ss_pred             cCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCC
Q psy9878         251 VSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       251 isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                      ++|..|+.+++.. .|.|..++||||||||++|||.|++++...   ....+.++|+|.++++++.....
T Consensus        79 i~p~~~~~~l~~~-~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~---~~~~~~~~f~~~~~~~i~C~~C~  144 (311)
T cd02658          79 IKPSMFKALIGKG-HPEFSTMRQQDALEFLLHLIDKLDRESFKN---LGLNPNDLFKFMIEDRLECLSCK  144 (311)
T ss_pred             cCcHHHHHHHhcc-ChhhcccccccHHHHHHHHHHHHHHhhccc---ccCCchhheEEEeeEEEEcCCCC
Confidence            9999999999986 899999999999999999999999987532   23568899999999877665544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.92  E-value=1.1e-24  Score=205.28  Aligned_cols=135  Identities=27%  Similarity=0.254  Sum_probs=111.4

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHh
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL  262 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~  262 (338)
                      ||.|+|||||||||||+|+++|+||++++.......   .......++.++|++|+..|+.+.   .+++|.+|+..++.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~l~~~~---~~i~p~~~~~~l~~   74 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR---GANQSSDNLTNALRDLFDTMDKKQ---EPVPPIEFLQLLRM   74 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc---ccccchhHHHHHHHHHHHHHHhCC---CcCCcHHHHHHHHH
Confidence            899999999999999999999999999987653211   111234689999999999999865   48999999999998


Q ss_pred             hcCCCCC------CCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCC-CccHH
Q psy9878         263 WSRKQFQ------FTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPV-ELEEK  325 (338)
Q Consensus       263 ~~~~~F~------~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~-~~~~~  325 (338)
                      . .+.|.      +++||||||||++|||.|++++.. .+...++|+++|+|++++++...... ..+..
T Consensus        75 ~-~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~-~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~  142 (305)
T cd02657          75 A-FPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG-AGSKGSFIDQLFGIELETKMKCTESPDEEEVS  142 (305)
T ss_pred             H-CcCcccccCCCCccccCHHHHHHHHHHHHHHHhcc-cCCCCcHHHHhhceEEEEEEEcCCCCCCCccc
Confidence            7 88884      559999999999999999999864 23456899999999999988877766 34433

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.92  E-value=9.3e-25  Score=207.76  Aligned_cols=134  Identities=26%  Similarity=0.378  Sum_probs=109.7

Q ss_pred             cccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Q psy9878         182 VGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVV  261 (338)
Q Consensus       182 ~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~  261 (338)
                      +||.|+|||||||||||+|+|+|+||++++...+.....  ......++.++|.++|..|+.... ..+++|..|+..+|
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~~~   77 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCL--SCSPNSCLSCAMDEIFQEFYYSGD-RSPYGPINLLYLSW   77 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccc--cCCccccHHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHH
Confidence            699999999999999999999999999999865432101  111246899999999999954432 56899999999999


Q ss_pred             hhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC------CccccccccceeEEEEEEEeCCC
Q psy9878         262 LWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK------KDSSIVYKTFLGSMKVKTRKIPP  319 (338)
Q Consensus       262 ~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~------~~~~ii~~iF~G~l~s~t~~~~~  319 (338)
                      .. .+.|.++.||||||||.+|||.|++++....+      ...++|+++|+|++.++......
T Consensus        78 ~~-~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C  140 (328)
T cd02660          78 KH-SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRC  140 (328)
T ss_pred             hh-chhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCC
Confidence            87 78999999999999999999999999865432      34579999999999987665443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.91  E-value=1.5e-24  Score=204.37  Aligned_cols=115  Identities=23%  Similarity=0.381  Sum_probs=99.0

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHh
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL  262 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~  262 (338)
                      ||.|+|||||||||||+|+|                         .++.++|+.||..||.+....++++|..|+++++.
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~   55 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR   55 (300)
T ss_pred             CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence            89999999999999999988                         24788999999999987644578999999999998


Q ss_pred             hcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC---------------CCccccccccceeEEEEEEEeCCCCCcc
Q psy9878         263 WSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK---------------KKDSSIVYKTFLGSMKVKTRKIPPVELE  323 (338)
Q Consensus       263 ~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~---------------~~~~~ii~~iF~G~l~s~t~~~~~~~~~  323 (338)
                      . .+.|.+++||||||||++|||.|++++....               ....++|.++|+|+++++++.......+
T Consensus        56 ~-~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s  130 (300)
T cd02663          56 E-NELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVS  130 (300)
T ss_pred             h-cCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCc
Confidence            7 8999999999999999999999999986432               2356889999999999988766554443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=99.90  E-value=5e-24  Score=206.87  Aligned_cols=126  Identities=21%  Similarity=0.379  Sum_probs=109.7

Q ss_pred             ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHH
Q psy9878         181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAV  260 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l  260 (338)
                      ..||.|+|||||+|||||||.++|||.+||++..|...+-+    ...|+.|+|+..+.....+.  ..+|+|..|+.-|
T Consensus       108 ~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~----~~~C~lc~~q~hi~~A~~~~--g~pisP~~i~s~L  181 (545)
T KOG1865|consen  108 GAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHR----AKFCMLCTFQAHITRALHNP--GHPISPSQILSNL  181 (545)
T ss_pred             CcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccc----cCeeeehHHHHHHHHHhcCC--CCccChHHHHHhh
Confidence            36999999999999999999999999999999888754432    34799999999988888776  4599999999999


Q ss_pred             HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC------CCccccccccceeEEEEE
Q psy9878         261 VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK------KKDSSIVYKTFLGSMKVK  313 (338)
Q Consensus       261 ~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~------~~~~~ii~~iF~G~l~s~  313 (338)
                      ... ...|..++|.||||||++++|.|+.-.....      ....++|++||||.|+|+
T Consensus       182 ~~I-~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~  239 (545)
T KOG1865|consen  182 RNI-SAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQ  239 (545)
T ss_pred             hhh-cccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhc
Confidence            886 8999999999999999999999998753222      256799999999999997

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.90  E-value=2e-23  Score=199.10  Aligned_cols=128  Identities=22%  Similarity=0.248  Sum_probs=99.6

Q ss_pred             CCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCH
Q psy9878         174 GTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP  253 (338)
Q Consensus       174 ~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP  253 (338)
                      .+.+..|++||.|+|||||||||||+|+|+|+||+.+......      ..  ...-.+.+..++++++...  ...++|
T Consensus        17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~~--~~~~~q~~~~~l~~~~~~~--~~~~~P   86 (332)
T cd02671          17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL------IS--SVEQLQSSFLLNPEKYNDE--LANQAP   86 (332)
T ss_pred             ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc------cC--cHHHHHHHHHHHHHHHhhc--ccccCH
Confidence            3456789999999999999999999999999999998754311      00  0112223334456666654  346789


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCCCcc
Q psy9878         254 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELE  323 (338)
Q Consensus       254 ~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~~~~  323 (338)
                      ..|++.++.. +|.|.+++||||||||++|||.|++           +|+++|+|++++++........+
T Consensus        87 ~~~~~~l~~~-~~~f~~~~QQDA~EFl~~LLd~L~~-----------~i~~~F~g~~~~~~~C~~C~~~s  144 (332)
T cd02671          87 RRLLNALREV-NPMYEGYLQHDAQEVLQCILGNIQE-----------LVEKDFQGQLVLRTRCLECETFT  144 (332)
T ss_pred             HHHHHHHHHh-ccccCCccccCHHHHHHHHHHHHHH-----------HHHhhhceEEEEEEEeCCCCCee
Confidence            9999999987 8999999999999999999999983           58899999999988765554443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.89  E-value=1.9e-23  Score=199.53  Aligned_cols=127  Identities=25%  Similarity=0.322  Sum_probs=100.5

Q ss_pred             ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhc------c--CCCCCC--------ChhHHHHHHHHHHHHHhCC
Q psy9878         181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYAR------V--KRPPGD--------SSFLLVQRFGELMRKLWNP  244 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~------~--~~~~~~--------~~~~l~~~l~~l~~~l~~~  244 (338)
                      ++||.|+||||||||+||+|+++|+||++++.......      .  .+..+.        ...+++.+|+.||..|+.+
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            47999999999999999999999999999997542210      0  000000        1236999999999999987


Q ss_pred             CCCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC-----------CccccccccceeEEEEE
Q psy9878         245 RNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK-----------KDSSIVYKTFLGSMKVK  313 (338)
Q Consensus       245 ~~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~-----------~~~~ii~~iF~G~l~s~  313 (338)
                      .  ..+++|..++..+.      |   .||||+||+..||+.|+++++....           ...++|+++|+|+++++
T Consensus        81 ~--~~~v~P~~~l~~l~------~---~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~  149 (343)
T cd02666          81 N--TRSVTPSKELAYLA------L---RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQ  149 (343)
T ss_pred             C--CCccCcHHHHHhcc------c---cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEE
Confidence            6  67999999987652      2   9999999999999999999875432           34679999999999988


Q ss_pred             EEeCC
Q psy9878         314 TRKIP  318 (338)
Q Consensus       314 t~~~~  318 (338)
                      .....
T Consensus       150 i~c~~  154 (343)
T cd02666         150 LVPES  154 (343)
T ss_pred             EEecc
Confidence            76443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.89  E-value=3.6e-23  Score=194.09  Aligned_cols=133  Identities=19%  Similarity=0.339  Sum_probs=109.6

Q ss_pred             ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHH
Q psy9878         181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAV  260 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l  260 (338)
                      ++||.|+|||||||||||+|+++|+||+++++..+......    ...++.++|..++..++...  ...++|..|.+.+
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~--~~~~~p~~~~~~l   74 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCN----EGFCMMCALEAHVERALASS--GPGSAPRIFSSNL   74 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccC----CcchHHHHHHHHHHHHHhCC--CCccChHHHHHHH
Confidence            37999999999999999999999999999987554332221    23579999999999988766  5789999999999


Q ss_pred             HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC---------CCccccccccceeEEEEEEEeCCCC
Q psy9878         261 VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK---------KKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       261 ~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~---------~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                      ... .+.|..+.||||+|||++|||.|++++....         ....++|.++|+|++++++......
T Consensus        75 ~~~-~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~  142 (304)
T cd02661          75 KQI-SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCK  142 (304)
T ss_pred             HHH-HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCC
Confidence            887 8999999999999999999999998864332         2346799999999999987654433

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.89  E-value=4e-23  Score=196.69  Aligned_cols=129  Identities=23%  Similarity=0.287  Sum_probs=102.9

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhcc--CC-CC--CCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARV--KR-PP--GDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~--~~-~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      ||.|+||||||||+||+|+++|+||++++........  .+ +.  .....+++++|+.||..|+.+.  ..+++|..|+
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~   78 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFV   78 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHH
Confidence            8999999999999999999999999999875432210  00 00  0123579999999999999887  6799999999


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC-CCccccccccceeEEEEEEEeCCC
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK-KKDSSIVYKTFLGSMKVKTRKIPP  319 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~-~~~~~ii~~iF~G~l~s~t~~~~~  319 (338)
                      +.+.      |..++||||||||.+|||.|++++.... ....++|.++|+|++.+++.....
T Consensus        79 ~~l~------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C  135 (324)
T cd02668          79 KALG------LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKC  135 (324)
T ss_pred             HHhC------CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCC
Confidence            8873      5678999999999999999999986532 235689999999999987665433

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1867|consensus

Probab=99.86  E-value=6.5e-22  Score=195.84  Aligned_cols=239  Identities=26%  Similarity=0.350  Sum_probs=166.2

Q ss_pred             ccccCC-CCCeeE-EeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHH
Q psy9878          30 CSVSLS-RINVYA-CLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTIN  107 (338)
Q Consensus        30 C~~c~~-~~~lw~-CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~  107 (338)
                      |..|.. .....+ |+.|+.+  ++..+.|...|....+|-+.+++.++..||++|.++|++...           ..+.
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~-----------~~~~  112 (492)
T KOG1867|consen   46 CGTCGVLQIRLAVPCLICDSL--GCLSNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAEL-----------LKLA  112 (492)
T ss_pred             eEEechhhhhhcccceechhc--ccccccccccccccccccccceeehhhheeccCCcEeeccch-----------hhHH
Confidence            666653 334455 7888754  446678899999999999999999999999999999985311           1111


Q ss_pred             hhhccc--cccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhhcCcccccccccCCCcccCCccccc
Q psy9878         108 RQLLDF--DFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLN  185 (338)
Q Consensus       108 ~~~~~~--~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~  185 (338)
                      ..+..+  .+.+.                     +.......+  .+.-..+..  .+..++  .......+..+++||+
T Consensus       113 ~~~~~~~~~~~~~---------------------~~~~~~~~~--~~~~~~~t~--~~~~~~--~~~~~~~~~~~l~g~~  165 (492)
T KOG1867|consen  113 DIKKYKEQPFHQL---------------------DSTLLTHLA--EATVCQQTL--LKENPK--DRLVLSTTALGLRGLR  165 (492)
T ss_pred             HHHhhhccchhhc---------------------cchhhhhhh--hhhccchhc--ccCCcc--cccccceeeecccccc
Confidence            111111  00000                     000000000  000000000  000000  0112345667899999


Q ss_pred             cCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHhhcC
Q psy9878         186 NIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSR  265 (338)
Q Consensus       186 NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~~~~  265 (338)
                      |+|+|||||++||+|.+.+..+...+...+..   .+......++.+++.++++.+|++.. +.+++|..+++.+|+. .
T Consensus       166 n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~---~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~~k~-~  240 (492)
T KOG1867|consen  166 NLGSTCFMNVILQSLLHDPLSRSSFLSGIHSK---EPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLVWKH-S  240 (492)
T ss_pred             cccHHHHHHHHHHHhhccchhhccchhhhccc---CCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHHHHh-C
Confidence            99999999999999999999999999877762   22222257899999999999999875 5799999999999998 9


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHhc---------ccCCCccccccccceeEEEEE
Q psy9878         266 KQFQFTEQSDPIDFLSWFLNTLHRALN---------GTKKKDSSIVYKTFLGSMKVK  313 (338)
Q Consensus       266 ~~F~~~~QqDA~Efl~~lLd~L~~e~~---------~~~~~~~~ii~~iF~G~l~s~  313 (338)
                      |.|.+++|||||||+..+++.+|.+.+         ...+.+.++++.+|.|.+.+.
T Consensus       241 ~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~  297 (492)
T KOG1867|consen  241 PNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSD  297 (492)
T ss_pred             cccccccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccc
Confidence            999999999999999999999998871         112345899999999999964

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.86  E-value=1.3e-21  Score=186.58  Aligned_cols=131  Identities=19%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             CccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878         180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA  259 (338)
Q Consensus       180 g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~  259 (338)
                      |++||.|+||||||||+||+|+++|+||++++......     ......++.++|+.+|..|..+.  ...+.|..+. .
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~lf~~~~~~~--~~~~~~~~~~-~   72 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-----DDDDNKSVPLALQRLFLFLQLSE--SPVKTTELTD-K   72 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-----cCcccccHHHHHHHHHHHHHhCC--ccccCcchhh-e
Confidence            78999999999999999999999999999999752111     01123568999999999999765  3445554443 2


Q ss_pred             HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCC
Q psy9878         260 VVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       260 l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                      +.....+.|..++||||+|||.+|||.|++++...  ...++|.++|+|+++.++......
T Consensus        73 ~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~--~~~~~i~~lF~g~~~~~~~C~~C~  131 (334)
T cd02659          73 TRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT--GQEGLIKNLFGGKLVNYIICKECP  131 (334)
T ss_pred             eccCCCCCCCcccchhHHHHHHHHHHHHHHHhccC--cccchhhhhCceEEEeEEEecCCC
Confidence            22222467889999999999999999999988643  344689999999999877665543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.85  E-value=2e-21  Score=185.34  Aligned_cols=116  Identities=24%  Similarity=0.315  Sum_probs=93.8

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHH-HHHHHH
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE-MLQAVV  261 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~-l~~~l~  261 (338)
                      ||.|+||||||||+||+|+++|+||++++.......      .....+..+|+.++..|....  ..++.|.. ++..++
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~--~~~~~~~~~~l~~~~   72 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQ--RRAEAPPDYFLEASR   72 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcC--CcccCCHHHHHHHhc
Confidence            899999999999999999999999999998654211      123457889999988887654  45677766 766542


Q ss_pred             hhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCC
Q psy9878         262 LWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       262 ~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                         .+.|..++||||||||++|||.|+           ++|.++|+|++.++++.....
T Consensus        73 ---~~~f~~~~QqDa~EFl~~lLd~l~-----------~~i~~~F~G~~~~~i~C~~C~  117 (327)
T cd02664          73 ---PPWFTPGSQQDCSEYLRYLLDRLH-----------TLIEKMFGGKLSTTIRCLNCN  117 (327)
T ss_pred             ---ccccCCCCcCCHHHHHHHHHHHHH-----------HHHHhhCcEEeEeEEEcCCCC
Confidence               578999999999999999999998           468999999999987765543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.84  E-value=6.2e-21  Score=173.94  Aligned_cols=137  Identities=28%  Similarity=0.478  Sum_probs=108.8

Q ss_pred             ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhc-cCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878         181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYAR-VKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA  259 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~  259 (338)
                      ++||.|.||||||||+||+|+++|+|+++++....... ..........++.++|..++..|+.+......+.|..|+..
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~   80 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA   80 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence            47999999999999999999999999999997521110 01111122357999999999999998333689999999999


Q ss_pred             HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------CccccccccceeEEEEEEEeCC
Q psy9878         260 VVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------KDSSIVYKTFLGSMKVKTRKIP  318 (338)
Q Consensus       260 l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------~~~~ii~~iF~G~l~s~t~~~~  318 (338)
                      ++.. .+.|..+.||||+|||..||+.|++++.....         ...+++.++|+|++........
T Consensus        81 l~~~-~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~  147 (269)
T PF00443_consen   81 LSSI-NPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSS  147 (269)
T ss_dssp             HHHH-CGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETT
T ss_pred             cccc-ccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence            9987 77899999999999999999999998876432         5678999999999988765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.84  E-value=2.9e-21  Score=180.19  Aligned_cols=86  Identities=23%  Similarity=0.395  Sum_probs=78.0

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHh
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL  262 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~  262 (338)
                      ||.|+|||||||||||+|+|+|+||++++.                                       +|..|+..++.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~---------------------------------------~P~~~~~~l~~   41 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE---------------------------------------TPKELFSQVCR   41 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHH---------------------------------------CHHHHHHHHHH
Confidence            899999999999999999999999999884                                       78889999988


Q ss_pred             hcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCC
Q psy9878         263 WSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPP  319 (338)
Q Consensus       263 ~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~  319 (338)
                      . .+.|.+++||||||||++|||.|+           ++|+++|+|++.++.+....
T Consensus        42 ~-~~~f~~~~QqDA~Efl~~lld~l~-----------~~i~~~F~G~~~~~i~C~~C   86 (279)
T cd02667          42 K-APQFKGYQQQDSHELLRYLLDGLR-----------TFIDSIFGGELTSTIMCESC   86 (279)
T ss_pred             h-hHhhcCCchhhHHHHHHHHHHHHH-----------HhhhhhcceEEEEEEEcCCC
Confidence            7 899999999999999999999998           46899999999987665443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.1e-20  Score=171.46  Aligned_cols=131  Identities=27%  Similarity=0.372  Sum_probs=100.7

Q ss_pred             CccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccC--CCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVK--RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       180 g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      .++||.|+|||||||++||||+.+..+...|+...+..+++  .+.|....-....|..+...+....  ...|+|..|+
T Consensus        70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg--~~sis~~nF~  147 (415)
T COG5533          70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHG--PKSISPRNFI  147 (415)
T ss_pred             CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCC--CcccchHHHH
Confidence            45799999999999999999999999988555544443332  3333332244555655555555444  3469999999


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC---------------------------------CCccccccc
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK---------------------------------KKDSSIVYK  304 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~---------------------------------~~~~~ii~~  304 (338)
                      +.+... ++.|++.+|||||||++++||.||+++++-.                                 ..++++|.+
T Consensus       148 ~i~~~~-n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~  226 (415)
T COG5533         148 DILSGR-NKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAK  226 (415)
T ss_pred             HHHccc-cccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHH
Confidence            999887 9999999999999999999999999986532                                 146699999


Q ss_pred             cceeEEEEE
Q psy9878         305 TFLGSMKVK  313 (338)
Q Consensus       305 iF~G~l~s~  313 (338)
                      +|.|++.++
T Consensus       227 ~f~gq~~sr  235 (415)
T COG5533         227 TFFGQDKSR  235 (415)
T ss_pred             HHhhhhhhh
Confidence            999999873

>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.80  E-value=3.2e-20  Score=134.19  Aligned_cols=60  Identities=30%  Similarity=0.459  Sum_probs=53.5

Q ss_pred             ccccCCC-CCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCCeEEec
Q psy9878          30 CSVSLSR-INVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVG   89 (338)
Q Consensus        30 C~~c~~~-~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~~   89 (338)
                      |++|... .++|+||+||+++||++.++||+.|+++++|+|+|++.++.||||+|+++|++
T Consensus         1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~   61 (63)
T PF02148_consen    1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYD   61 (63)
T ss_dssp             -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEES
T ss_pred             CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeC
Confidence            7788877 89999999999999999999999999999999999999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....

>KOG1868|consensus

Probab=99.67  E-value=1.4e-16  Score=161.21  Aligned_cols=116  Identities=27%  Similarity=0.349  Sum_probs=98.8

Q ss_pred             ccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHH
Q psy9878         177 YLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM  256 (338)
Q Consensus       177 ~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l  256 (338)
                      -..|.+||.|+|||||||++||||+.++.||+.+++..+...++.........+..++.+++.++|.... ...+.|..|
T Consensus       297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~s~~P~~f  375 (653)
T KOG1868|consen  297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHG-QFSVLPRRF  375 (653)
T ss_pred             cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCC-ceecCcHHH
Confidence            3568899999999999999999999999999999988776665522223345688888899999988754 457999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9878         257 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGT  294 (338)
Q Consensus       257 ~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~  294 (338)
                      +..+.+. .+.|+++.|||||||+.++++.||++++..
T Consensus       376 ~~~~~~y-~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~  412 (653)
T KOG1868|consen  376 IRVLKRY-SPNFSGYSQQDAQEFLIFLLDRLHEELNEN  412 (653)
T ss_pred             HHHHhhc-ccccccccccchHHHHHHHHHhhhHhhhcc
Confidence            9999998 899999999999999999999999998653

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.67  E-value=1.1e-16  Score=146.19  Aligned_cols=71  Identities=27%  Similarity=0.384  Sum_probs=61.6

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHh
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL  262 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~  262 (338)
                      ||+|+||||||||+||+|+++|+||+++.+..                                                
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------   32 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------   32 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence            89999999999999999999999999987411                                                


Q ss_pred             hcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCCC
Q psy9878         263 WSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVE  321 (338)
Q Consensus       263 ~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~~  321 (338)
                               +||||||||++||+.|+.           .+.++|.|++.++........
T Consensus        33 ---------~QqDa~EFl~~ll~~l~~-----------~i~~~F~g~~~~~i~C~~C~~   71 (240)
T cd02662          33 ---------EQQDAHELFQVLLETLEQ-----------LLKFPFDGLLASRIVCLQCGE   71 (240)
T ss_pred             ---------hhcCHHHHHHHHHHHHHH-----------hccCccccEEEEEEEeCCCCC
Confidence                     999999999999999992           478899999998776554443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1863|consensus

Probab=99.58  E-value=2.1e-15  Score=162.88  Aligned_cols=132  Identities=24%  Similarity=0.275  Sum_probs=108.2

Q ss_pred             cCCc-cccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHH
Q psy9878         178 LPGI-VGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM  256 (338)
Q Consensus       178 ~~g~-~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l  256 (338)
                      ..|+ +||.|+||||||||+||+|+.++.||+.+........    ..+....+..+|+.||..|..++  ..++.|.++
T Consensus       166 ~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~----~~~~~~~v~~~lq~lF~~LQ~s~--~k~Vdt~~~  239 (1093)
T KOG1863|consen  166 LTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTG----HEDPRRSIPLALQRLFYELQMSK--RKYVDTSEL  239 (1093)
T ss_pred             cCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCC----cccccchHHHHHHHHHHHHhhcC--CCCcCchhh
Confidence            4566 9999999999999999999999999999998663211    11223458889999999999987  679999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCC
Q psy9878         257 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       257 ~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                      ...+...+   ....+|||+|||++.|+|.|++.+.+..  ....|.++|.|.+.+....+...
T Consensus       240 ~~~~~~~~---~~~~~QqDvqEf~~~l~d~LE~~~~~~~--~~~~l~~lf~g~~~~~i~c~~~~  298 (1093)
T KOG1863|consen  240 TKSLGWDS---NDSFEQQDVQEFLTKLLDWLEDSMIDAK--VENTLQDLFTGKMKSVIKCIDVD  298 (1093)
T ss_pred             hhhhhccc---ccHHhhhhHHHHHHHHHHHHHhhccchh--hhhhhhhhhcCCcceEEEEEeee
Confidence            99997762   4566999999999999999999887654  46789999999988765555543

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=5.2e-15  Score=147.59  Aligned_cols=136  Identities=20%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHH
Q psy9878         176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE  255 (338)
Q Consensus       176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~  255 (338)
                      +...|++||+|.|.||||||+||+|+.+..||+.+......    .+.  ....++-+|+++|..|..++   .+++..+
T Consensus       188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd----~p~--grdSValaLQr~Fynlq~~~---~PvdTte  258 (1089)
T COG5077         188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTD----HPR--GRDSVALALQRLFYNLQTGE---EPVDTTE  258 (1089)
T ss_pred             ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCC----CCC--ccchHHHHHHHHHHHHhccC---CCcchHH
Confidence            34579999999999999999999999999999988865422    111  23568889999999999875   7999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCCCCCccHH
Q psy9878         256 MLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEK  325 (338)
Q Consensus       256 l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~~~~~~~~  325 (338)
                      |...++..   .+...+|||.|||=+-|.|.|++.+.++.  -...+..+|-|+++|.-..++....+.+
T Consensus       259 ltrsfgWd---s~dsf~QHDiqEfnrVl~DnLEksmrgt~--VEnaln~ifVgkmksyikCvnvnyEsar  323 (1089)
T COG5077         259 LTRSFGWD---SDDSFMQHDIQEFNRVLQDNLEKSMRGTV--VENALNGIFVGKMKSYIKCVNVNYESAR  323 (1089)
T ss_pred             hhhhcCcc---cchHHHHHhHHHHHHHHHHHHHHhhcCCh--hhhHHhHHHHHHhhceeeEEEechhhhh
Confidence            99998654   45566999999999999999999876653  2345789999999998888877655544

>KOG1870|consensus

Probab=99.52  E-value=1.5e-14  Score=152.73  Aligned_cols=134  Identities=26%  Similarity=0.465  Sum_probs=113.9

Q ss_pred             cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhcc--CCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCH
Q psy9878         176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARV--KRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSP  253 (338)
Q Consensus       176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP  253 (338)
                      ...+|.+||.|+|||||||+.+|+|.+.+.+++|++...+...+  .++. ...+.+..++..++..+|++.  ...+.|
T Consensus       241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~-~~~~~~~~~~~~l~~~~~s~~--~~~v~~  317 (842)
T KOG1870|consen  241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPL-GSAGEVASSFADLIKQLWSGN--KSAVAP  317 (842)
T ss_pred             CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCC-cccceechhhhhHHHHhccCC--ccccCc
Confidence            34579999999999999999999999999999999987665522  2332 245678889999999999987  458999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------------------Cccccccccc
Q psy9878         254 HEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTF  306 (338)
Q Consensus       254 ~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------------------~~~~ii~~iF  306 (338)
                      ..+...+... .++|.|+.|||.+||+-+|+|.+|+.+....+                           ++.++|.++|
T Consensus       318 ~~~~~~~~~~-a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~  396 (842)
T KOG1870|consen  318 TSFRTSLASF-ASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLF  396 (842)
T ss_pred             hhhhhhhhhc-cccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeee
Confidence            9999999987 89999999999999999999999998865431                           4668999999


Q ss_pred             eeEEEEE
Q psy9878         307 LGSMKVK  313 (338)
Q Consensus       307 ~G~l~s~  313 (338)
                      .|.++|.
T Consensus       397 ~~~~~S~  403 (842)
T KOG1870|consen  397 DGTYKST  403 (842)
T ss_pred             cceeccc
Confidence            9999984

>KOG0804|consensus

Probab=99.37  E-value=2.7e-13  Score=128.71  Aligned_cols=62  Identities=23%  Similarity=0.357  Sum_probs=59.4

Q ss_pred             cccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCCeEEe
Q psy9878          27 EKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIV   88 (338)
Q Consensus        27 ~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~   88 (338)
                      ++.|..|....+||+||.||+++||||..+||..||++++|+.++++.|..||=|+-|.||.
T Consensus       228 ~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVh  289 (493)
T KOG0804|consen  228 SSLCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVH  289 (493)
T ss_pred             hhhhhhhcccccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhh
Confidence            55699999999999999999999999999999999999999999999999999999999985

>KOG1871|consensus

Probab=99.34  E-value=1.3e-12  Score=122.54  Aligned_cols=139  Identities=19%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             CCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhC---------------
Q psy9878         179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWN---------------  243 (338)
Q Consensus       179 ~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---------------  243 (338)
                      .-++|+.|-||.|||||+||+|..+++|.+.+-...-......   ....+++.++..+...+-+               
T Consensus        26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~---~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~  102 (420)
T KOG1871|consen   26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK---EGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP  102 (420)
T ss_pred             cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee---cccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence            3457999999999999999999999999998765442111111   1235566666666555542               


Q ss_pred             -----------CCCCCCccCHHHHHHHHHhhcCCCC---CCCCCCCHHHHHHHHHHHHHHHhcccCC-------------
Q psy9878         244 -----------PRNFKSHVSPHEMLQAVVLWSRKQF---QFTEQSDPIDFLSWFLNTLHRALNGTKK-------------  296 (338)
Q Consensus       244 -----------~~~~~~~isP~~l~~~l~~~~~~~F---~~~~QqDA~Efl~~lLd~L~~e~~~~~~-------------  296 (338)
                                 ......++-|..+...++.  .+.|   ..++|.||.|||.++||.||+|+....+             
T Consensus       103 ~~~~~~ses~~~d~~~dav~~d~~~~~l~t--~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~  180 (420)
T KOG1871|consen  103 EHVVEKSESNKSDLQGDAVKPDPIYLDLLT--MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG  180 (420)
T ss_pred             ccccchhhhhhhcccCccccCCchhhhccc--CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence                       0111345666667666655  4566   3689999999999999999999754320             


Q ss_pred             ----------------------------------------CccccccccceeEEEEEEEeCCCCCc
Q psy9878         297 ----------------------------------------KDSSIVYKTFLGSMKVKTRKIPPVEL  322 (338)
Q Consensus       297 ----------------------------------------~~~~ii~~iF~G~l~s~t~~~~~~~~  322 (338)
                                                              ...+.|+++|+|++++.......++.
T Consensus       181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS  246 (420)
T KOG1871|consen  181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKES  246 (420)
T ss_pred             cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccc
Confidence                                                    24589999999999997666555443

>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger

Probab=99.31  E-value=1.4e-12  Score=89.71  Aligned_cols=48  Identities=31%  Similarity=0.464  Sum_probs=45.6

Q ss_pred             ccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCe
Q psy9878          30 CSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLK   77 (338)
Q Consensus        30 C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~   77 (338)
                      |..|.+..++|+||+||+++||++..+|+..|+++++|++++++.++.
T Consensus         2 C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~   49 (50)
T smart00290        2 CSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR   49 (50)
T ss_pred             cccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence            899999889999999999999999999999999999999999998864

>KOG1866|consensus

Probab=99.31  E-value=1.9e-12  Score=129.36  Aligned_cols=153  Identities=25%  Similarity=0.390  Sum_probs=117.3

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      ..|++||+|-|+|||||+++|-|.++|.+|.-++...+.+....-.++  .-+.++++.+|..+..+.  -..+-|..|-
T Consensus        92 p~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~--e~vl~~lQ~iF~hL~~s~--lQyyVPeg~W  167 (944)
T KOG1866|consen   92 PEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGD--EKVLRHLQVIFGHLAASQ--LQYYVPEGFW  167 (944)
T ss_pred             CcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcch--HHHHHHHHHHHHHHHHHh--hhhhcchhHH
Confidence            468999999999999999999999999999988876655322222222  228899999999998776  5789999999


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEE-------------------EEeCC
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVK-------------------TRKIP  318 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~-------------------t~~~~  318 (338)
                      +.++.+ +......+||||-|||..|||++.+.++...  ...++...|+|.+.-+                   +-.+.
T Consensus       168 k~Fr~~-~~pln~reqhDA~eFf~sLld~~De~LKklg--~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~  244 (944)
T KOG1866|consen  168 KQFRLW-GEPLNLREQHDALEFFNSLLDSLDEALKKLG--HPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR  244 (944)
T ss_pred             HHhhcc-CCccchHhhhhHHHHHHHHHHHHHHHHHHhC--CcHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc
Confidence            999888 6777789999999999999999999886542  3457788888887631                   22223


Q ss_pred             CCC----ccHHHHHhHhhccCCC
Q psy9878         319 PVE----LEEKVRQRLLLTDNSY  337 (338)
Q Consensus       319 ~~~----~~~~~~~~~~~~~~~~  337 (338)
                      ...    +++=++.+.+.|.|-|
T Consensus       245 ~~nLeesLeqfv~gevlEG~nAY  267 (944)
T KOG1866|consen  245 HQNLEESLEQFVKGEVLEGANAY  267 (944)
T ss_pred             cchHHHHHHHHHHHHHhcCcchh
Confidence            332    2334577778888877

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.28  E-value=2.7e-12  Score=117.54  Aligned_cols=82  Identities=20%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             cccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHhh
Q psy9878         184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVLW  263 (338)
Q Consensus       184 L~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~~  263 (338)
                      |.|.||.||+|+.+|+|+.+                                                         ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i---------------------------------------------------------~~~   24 (245)
T cd02673           2 LVNTGNSCYFNSTMQALSSI---------------------------------------------------------GKI   24 (245)
T ss_pred             ceecCCeeeehhHHHHHHHH---------------------------------------------------------hhh
Confidence            78999999999999998552                                                         122


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC--------CccccccccceeEEEEEEEeCCCCCcc
Q psy9878         264 SRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK--------KDSSIVYKTFLGSMKVKTRKIPPVELE  323 (338)
Q Consensus       264 ~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~--------~~~~ii~~iF~G~l~s~t~~~~~~~~~  323 (338)
                       +|.|++++||||||||++|||.|++++.....        .......++|+|+++++.........+
T Consensus        25 -~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s   91 (245)
T cd02673          25 -NTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEE   91 (245)
T ss_pred             -hhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCee
Confidence             78999999999999999999999997744311        111223578999999987765554444

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.28  E-value=7.7e-12  Score=117.62  Aligned_cols=130  Identities=24%  Similarity=0.313  Sum_probs=105.5

Q ss_pred             cccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHh-CCCCCCCccCHHHHHHHH
Q psy9878         182 VGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLW-NPRNFKSHVSPHEMLQAV  260 (338)
Q Consensus       182 ~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~~~isP~~l~~~l  260 (338)
                      .||.|-+++||+||+||+|+.+|++|+.++... .  +     ....||.|+|.-||..|- .+.  .....+..|+..+
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~--c-----~~e~cL~cELgfLf~ml~~~~~--g~~cq~sNflr~l   70 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E--C-----PKEFCLLCELGFLFDMLDSKAK--GINCQASNFLRAL   70 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C--C-----CccccHHHHHHHHHHHhhhhcC--CCcChHHHHHHHH
Confidence            499999999999999999999999999999755 1  1     135799999999999998 655  5678899999999


Q ss_pred             HhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC-----------CccccccccceeEEEEEEEeCCCCCc
Q psy9878         261 VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK-----------KDSSIVYKTFLGSMKVKTRKIPPVEL  322 (338)
Q Consensus       261 ~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~-----------~~~~ii~~iF~G~l~s~t~~~~~~~~  322 (338)
                      ... .....-+.|+|.++|+++|+++|+.++.....           ...+.|.++|+......++.......
T Consensus        71 ~~~-~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~  142 (295)
T PF13423_consen   71 SWI-PEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHE  142 (295)
T ss_pred             hcC-HHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCe
Confidence            765 33455667999999999999999998865543           24678999999888887777444433

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.27  E-value=2.1e-12  Score=116.47  Aligned_cols=55  Identities=38%  Similarity=0.633  Sum_probs=50.0

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHh
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL  262 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~  262 (338)
                      ||.|.|||||+||+||+|.+                                                            
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------   20 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------   20 (230)
T ss_pred             CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence            89999999999999999988                                                            


Q ss_pred             hcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeC
Q psy9878         263 WSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKI  317 (338)
Q Consensus       263 ~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~  317 (338)
                               +||||+||+++||+.|+           ++|.++|+|++.++.+..
T Consensus        21 ---------~QqDa~Ef~~~ll~~l~-----------~~i~~~F~~~~~~~~~C~   55 (230)
T cd02674          21 ---------DQQDAQEFLLFLLDGLH-----------SIIVDLFQGQLKSRLTCL   55 (230)
T ss_pred             ---------hhhhHHHHHHHHHHHHh-----------hhHHheeCCEEeCcEEcC
Confidence                     89999999999999998           368899999999876553

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.24  E-value=9.1e-12  Score=112.53  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcccC------CCccccccccceeEEEEEEEe
Q psy9878         272 EQSDPIDFLSWFLNTLHRALNGTK------KKDSSIVYKTFLGSMKVKTRK  316 (338)
Q Consensus       272 ~QqDA~Efl~~lLd~L~~e~~~~~------~~~~~ii~~iF~G~l~s~t~~  316 (338)
                      .|||||||++.|||.|++++....      ....++|.++|+|++.+++..
T Consensus        21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~   71 (228)
T cd02665          21 QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL   71 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE
Confidence            899999999999999999987543      245678999999999986654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.15  E-value=2.2e-11  Score=109.06  Aligned_cols=68  Identities=32%  Similarity=0.478  Sum_probs=58.6

Q ss_pred             ccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHHh
Q psy9878         183 GLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVVL  262 (338)
Q Consensus       183 GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~  262 (338)
                      ||.|.|||||+||+||+|++                                                            
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------   20 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------   20 (255)
T ss_pred             CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence            89999999999999999988                                                            


Q ss_pred             hcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC------CCccccccccceeEEEEEEEeCCC
Q psy9878         263 WSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK------KKDSSIVYKTFLGSMKVKTRKIPP  319 (338)
Q Consensus       263 ~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~------~~~~~ii~~iF~G~l~s~t~~~~~  319 (338)
                               .||||+|||..+|+.|++++....      ....+++.++|+|.+..+......
T Consensus        21 ---------~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c   74 (255)
T cd02257          21 ---------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLEC   74 (255)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCC
Confidence                     899999999999999999886522      234578999999999988765443

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1872|consensus

Probab=99.02  E-value=9.4e-11  Score=112.76  Aligned_cols=138  Identities=21%  Similarity=0.086  Sum_probs=101.7

Q ss_pred             CCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHH
Q psy9878         179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQ  258 (338)
Q Consensus       179 ~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~  258 (338)
                      +-.+||.|+|||||||+.+|+|-..|+++..+............. .....+..+|+.+|+.|.+.    .++.|..++.
T Consensus       103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~-~~a~~i~~~mR~~f~~~~~~----~~v~pi~llq  177 (473)
T KOG1872|consen  103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTW-ERRRRISIETRTCFRPLCEK----GAVAPINLLQ  177 (473)
T ss_pred             cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchh-hhhhhHHHHHHHHHHhhhcc----CCcchHHHHH
Confidence            345699999999999999999999999888776543221111111 11345778899999999875    6899999999


Q ss_pred             HHHhhcCCCCCC------CCCCCHHHHHHHHHHHHHHHhcccCC--CccccccccceeEEEEEEEeCCCCCcc
Q psy9878         259 AVVLWSRKQFQF------TEQSDPIDFLSWFLNTLHRALNGTKK--KDSSIVYKTFLGSMKVKTRKIPPVELE  323 (338)
Q Consensus       259 ~l~~~~~~~F~~------~~QqDA~Efl~~lLd~L~~e~~~~~~--~~~~ii~~iF~G~l~s~t~~~~~~~~~  323 (338)
                      .+.++ .|+|..      +.||||-|++..++-.+++.+.....  .....++..|+..+.. |.+....+..
T Consensus       178 tl~~~-~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~-t~~~~e~e~~  248 (473)
T KOG1872|consen  178 TLSSQ-YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFST-TMSCSEGEDE  248 (473)
T ss_pred             HHHHH-hHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhcccccc-ceeeccCccc
Confidence            99998 899965      99999999999999999987654332  2345566667666655 6665555443

>KOG1864|consensus

Probab=98.17  E-value=1.4e-06  Score=88.51  Aligned_cols=141  Identities=21%  Similarity=0.315  Sum_probs=98.6

Q ss_pred             CCccccccCCChhHHH--HHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHH
Q psy9878         179 PGIVGLNNIKANDYCN--VILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM  256 (338)
Q Consensus       179 ~g~~GL~NlGNTCy~N--svLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l  256 (338)
                      ...-|..|.+++|+-|  +|.|.+....+++...+.....  ..+ .......+...+..++............+.|..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~  306 (587)
T KOG1864|consen  230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTS--LKR-SYIIKEELLTCLLDLFSSISSRKKLVGRISPTRF  306 (587)
T ss_pred             ccccCccccCccccccchhhHHHHHhhhhhcccccchhhc--ccc-hhhhhHHHHHHhhhhccchhhhcccccccCcchh
Confidence            3456999999999999  9999999988887544432211  111 1111223333444444444333333467999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC------------C------------------Cccccccccc
Q psy9878         257 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK------------K------------------KDSSIVYKTF  306 (338)
Q Consensus       257 ~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~------------~------------------~~~~ii~~iF  306 (338)
                      +..+++. +..|..+.|||||||+.++++.+.+.+....            .                  ...++|+.+|
T Consensus       307 ~~~~~~~-~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf  385 (587)
T KOG1864|consen  307 ISDLIKE-NELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLF  385 (587)
T ss_pred             hhhhhhc-CCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhh
Confidence            9999997 9999999999999999999999998653321            0                  1458899999


Q ss_pred             eeEEEEEEEeCCCCCcc
Q psy9878         307 LGSMKVKTRKIPPVELE  323 (338)
Q Consensus       307 ~G~l~s~t~~~~~~~~~  323 (338)
                      +|++..+|+.......+
T Consensus       386 ~g~l~~et~Clsc~t~T  402 (587)
T KOG1864|consen  386 QGILTNETRCLSCETIT  402 (587)
T ss_pred             cCeeeeeeeeccccccc
Confidence            99999988776654333

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=98.07  E-value=4.3e-06  Score=77.72  Aligned_cols=55  Identities=27%  Similarity=0.452  Sum_probs=42.6

Q ss_pred             CCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHH
Q psy9878         179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRK  240 (338)
Q Consensus       179 ~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~  240 (338)
                      .+++||.|.|.|||+||+||+|.++|+||++ +.  +....    .....|+.++|.-||..
T Consensus        13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~--~~~~~----~~~~~~l~~el~~lfs~   67 (268)
T cd02672          13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNF-TA--IILVA----CPKESCLLCELGYLFST   67 (268)
T ss_pred             ccccccccCCccchHHHHHHHHHhcHHHHHH-HH--hhccc----CCcCccHHHHHHHHHHH
Confidence            4689999999999999999999999999998 32  11111    11347899999888843

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=97.88  E-value=5.4e-06  Score=83.34  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      +.|++||.|...|||+|+.+|+|+..|.+++.+....                                 +.++....|.
T Consensus        84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~---------------------------------~~~~et~dlt  130 (1203)
T KOG4598|consen   84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE---------------------------------NDSLETKDLT  130 (1203)
T ss_pred             CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC---------------------------------cccccchhhH
Confidence            4688999999999999999999999999887766211                                 2345555566


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEE
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMK  311 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~  311 (338)
                      +.++..+..   -++|||.||+-+.++|.|+-..++++  ....|.+++.|++.
T Consensus       131 ~sfgw~s~e---a~~qhdiqelcr~mfdalehk~k~t~--~~~li~~ly~g~m~  179 (1203)
T KOG4598|consen  131 QSFGWTSNE---AYDQHDVQELCRLMFDALEHKWKGTE--HEKLIQDLYRGTME  179 (1203)
T ss_pred             hhcCCCcch---hhhhhhHHHHHHHHHHHHHhhhcCch--HHHHHHHHhcchHH
Confidence            666544333   45999999999999999987776654  34578888888765

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=97.38  E-value=6.2e-05  Score=74.87  Aligned_cols=45  Identities=76%  Similarity=1.328  Sum_probs=41.3

Q ss_pred             hhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhh
Q psy9878         101 PYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDD  145 (338)
Q Consensus       101 ~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (338)
                      +++|+|++.++||||||++++...+.|+|+||+||+++.+.+...
T Consensus         1 ~yl~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~   45 (440)
T cd02669           1 PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGS   45 (440)
T ss_pred             CchhhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCc
Confidence            479999999999999999999999999999999999998876554

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1864|consensus

Probab=96.92  E-value=0.0015  Score=66.82  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             cccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccC-CCC------CCChhHHHHHHHHHHHHHh--CCCCCCCccCHH
Q psy9878         184 LNNIKANDYCNVILQALCHVTPLRDYFLREINYARVK-RPP------GDSSFLLVQRFGELMRKLW--NPRNFKSHVSPH  254 (338)
Q Consensus       184 L~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~-~~~------~~~~~~l~~~l~~l~~~l~--~~~~~~~~isP~  254 (338)
                      |+|.||+||.|++||+|..+|+|+--+.......... .+.      .....+-.+.+........  +.....-.++-.
T Consensus        34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  113 (587)
T KOG1864|consen   34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT  113 (587)
T ss_pred             EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence            9999999999999999999999987665321100000 000      0000111111111111111  111101123333


Q ss_pred             HHHHHHHhhc--CCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q psy9878         255 EMLQAVVLWS--RKQFQFTEQSDPIDFLSWFLNTLHRALN  292 (338)
Q Consensus       255 ~l~~~l~~~~--~~~F~~~~QqDA~Efl~~lLd~L~~e~~  292 (338)
                      .+...+....  ...|.-..|+||++|+.-|+-.+..-+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~  153 (587)
T KOG1864|consen  114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG  153 (587)
T ss_pred             HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence            4444433221  3457788999999999998888877554

>KOG2026|consensus

Probab=96.58  E-value=0.00085  Score=63.80  Aligned_cols=48  Identities=63%  Similarity=1.081  Sum_probs=43.2

Q ss_pred             ccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhh
Q psy9878          98 RLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDD  145 (338)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (338)
                      .-.+++|++++.++|||+|+.+++++++.+++||++||+|+++.+..+
T Consensus        11 ~~~~yldtv~r~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~~kS   58 (442)
T KOG2026|consen   11 PNYAYLETVVRRVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRGEKS   58 (442)
T ss_pred             cchHhhhhhhhhhccccCCCCCcccccccceeeeeeeCchhhCcCccc
Confidence            346789999999999999999999999999999999999999866544

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=94.99  E-value=0.023  Score=51.94  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=15.2

Q ss_pred             ccccCCC-hhHHHHHHHHHhc
Q psy9878         183 GLNNIKA-NDYCNVILQALCH  202 (338)
Q Consensus       183 GL~NlGN-TCy~NsvLQ~L~~  202 (338)
                      |..|.+| +||+-|+|=+++.
T Consensus         1 g~~~~~~~~cy~d~~~~~~f~   21 (241)
T cd02670           1 GAQNHCNVSCYLDALLFAMFA   21 (241)
T ss_pred             CCccccCceeehHHHHHHHHH
Confidence            6778888 8888888766654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1275|consensus

Probab=93.56  E-value=0.18  Score=53.18  Aligned_cols=72  Identities=28%  Similarity=0.445  Sum_probs=58.1

Q ss_pred             CccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878         180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA  259 (338)
Q Consensus       180 g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~  259 (338)
                      -+.||.--+-.-|-||+||.|+.+|++|..+++..-         ....||.|+|.=||..|-.+.  ..+.....|+.+
T Consensus       498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C---------~~e~CL~CELGFLF~Ml~~S~--G~~Cqa~NFlra  566 (1118)
T KOG1275|consen  498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC---------TKEFCLLCELGFLFTMLDSST--GDPCQANNFLRA  566 (1118)
T ss_pred             eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc---------chhHHHHHHHHHHHHHHhhhc--CCccchhHHHHH
Confidence            356888888888999999999999999999997631         135899999999999987765  456777777777


Q ss_pred             HHh
Q psy9878         260 VVL  262 (338)
Q Consensus       260 l~~  262 (338)
                      ++.
T Consensus       567 f~t  569 (1118)
T KOG1275|consen  567 FRT  569 (1118)
T ss_pred             Hhh
Confidence            764

>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation

Probab=90.40  E-value=0.28  Score=41.37  Aligned_cols=56  Identities=21%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             ccccC--CCCCeeEEeeeCceecccC---CchhHhhhhhhcCcc-EEEeecC----CeEEEecCCe
Q psy9878          30 CSVSL--SRINVYACLVCGKYFQGRG---TNTFAYTHSVAESHH-VFLNLHT----LKFYCLPDNY   85 (338)
Q Consensus        30 C~~c~--~~~~lw~CL~Cg~~~CGr~---~~~Ha~~H~~~~~H~-l~v~l~t----~~v~Cy~Cd~   85 (338)
                      |+-|+  ....+-.|++|++-||...   ..+|...|-....|. +.+.-++    -.+.||.|..
T Consensus         3 C~YCG~~~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~   68 (152)
T PF09416_consen    3 CAYCGIHDPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGS   68 (152)
T ss_dssp             -TTT----CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT--
T ss_pred             ccccCCCCcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCC
Confidence            66676  6778999999999999764   369999998877665 5555544    4678999965

This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.37  E-value=0.23  Score=42.96  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=15.3

Q ss_pred             ccccccCCChhHHHHHHHHHhc
Q psy9878         181 IVGLNNIKANDYCNVILQALCH  202 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~  202 (338)
                      ++|+.|.+|+|++||++|.+-.
T Consensus        33 ft~~PN~~dnCWlNaL~QL~~~   54 (193)
T PF05408_consen   33 FTGLPNNHDNCWLNALLQLFRY   54 (193)
T ss_dssp             EE----SSSTHHHHHHHHHHHH
T ss_pred             EecCCCCCCChHHHHHHHHHHH
Confidence            5699999999999999997643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		4e-12
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		1e-06
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		1e-06
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		2e-06
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		2e-06
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		2e-06
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		3e-06
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		3e-06
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		3e-06
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		3e-05

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           PG+ GL N+    + N  LQ L +  PL DYFL++   A + R  P      + + + EL
Sbjct: 6   PGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 65
Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           ++++W+ R+  +HV+P  M +  V     QF   +Q D  + L++ L+ LH  LN  KKK
Sbjct: 66  IKQMWSGRD--AHVAP-RMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 122

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G VGL N+    + N +LQ L    PLRD+ LR     R + P G  +  L + F +++ 
Sbjct: 15  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRD--FRQEVPGGGRAQELTEAFADVIG 72
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
            LW+P + ++ V+P    +AV       F    Q D  +FL   +  LH  +N   ++  
Sbjct: 73  ALWHPDSCEA-VNP-TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 130
Query: 300 SIV 302
            I+
Sbjct: 131 PIL 133

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G+ GL N+    + N ILQ L +   LRDY L+ + Y R      ++   LV+ F +L++
Sbjct: 8   GLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 66
Query: 240 KLW--NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
            +W  +P +    VSP E    +  ++ +   + +Q D  +FL + L+ LH  +N
Sbjct: 67  TIWTSSPNDV---VSPSEFKTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVN 117

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G VGL N+    + N +LQ L    PLRD+ LR     R + P G  +  L + F +++ 
Sbjct: 2   GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRD--FRQEVPGGGRAQELTEAFADVIG 59
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
            LW+P + ++ V+P    +AV       F    Q D  +FL   +  LH  +N   ++  
Sbjct: 60  ALWHPDSCEA-VNPTR-FRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 117
Query: 300 SIV 302
            I+
Sbjct: 118 PIL 120

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G VGL N+    + N +LQ L    PLRD+ LR     R + P G  +  L + F +++ 
Sbjct: 21  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRD--FRQEVPGGGRAQELTEAFADVIG 78
Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
            LW+P + ++ V+P    +AV       F    Q D  +FL   +  LH  +N   ++  
Sbjct: 79  ALWHPDSCEA-VNPTR-FRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 136
Query: 300 SIV 302
            I+
Sbjct: 137 PIL 139

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQR 233
           P + GL N+    Y N ILQ LC+   L DYF R     +IN + +    G+    + + 
Sbjct: 60  PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGE----VAEE 115
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
           FG +M+ LW  +    ++SP +  +  +     QF    Q D  + L + ++ LH  LN 
Sbjct: 116 FGIIMKALWTGQ--YRYISPKD-FKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLN- 171
Query: 294 TKKKDSSIVYK 304
             K D+   YK
Sbjct: 172 --KADNRKRYK 180

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G+ GL N+    + N ILQ L +   LRDY L+ + Y R      ++   LV+ F +L++
Sbjct: 8   GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 66
Query: 240 KLW--NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
            +W  +P +    VSP E    +  ++ +   + +Q D  +FL + L+ LH  +N
Sbjct: 67  TIWTSSPNDV---VSPSEFKTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVN 117

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G+ GL N+    + N ILQ L +   LRDY L+ + Y R      ++   LV+ F +L++
Sbjct: 27  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 85
Query: 240 KLW--NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
            +W  +P +    VSP E    +  ++ +   + +Q D  +FL + L+ LH  +N
Sbjct: 86  TIWTSSPNDV---VSPSEFKTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVN 136

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G+ GL N+    + N ILQ L +   LRDY L+ + Y R      ++   LV+ F +L++
Sbjct: 34  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 92
Query: 240 KLW--NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
            +W  +P +    VSP E    +  ++ +   + +Q D  +FL + L+ LH  +N
Sbjct: 93  TIWTSSPNDV---VSPSEFKTQIQRYAPRFVGYNQQ-DAQEFLRFLLDGLHNEVN 143

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLR-----EINYARVKRPPGDSSFLLVQR 233
           P + GL N+    Y N ILQ LC+   L DYF R     +IN + +    G+    + + 
Sbjct: 60  PALTGLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGE----VAEE 115
Query: 234 FGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNG 293
           FG + + LW  +    ++SP +  +  +     QF    Q D  + L +  + LH  LN 
Sbjct: 116 FGIIXKALWTGQ--YRYISPKD-FKITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLN- 171
Query: 294 TKKKDSSIVYK 304
             K D+   YK
Sbjct: 172 --KADNRKRYK 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	1e-39
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	9e-18
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	1e-17
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	6e-17
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	1e-16
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	1e-16
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	7e-05
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	6e-13
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	9e-13
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	1e-12
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	2e-09
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	3e-09
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	4e-09
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	7e-09
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score =  147 bits (372), Expect = 1e-39
 Identities = 47/347 (13%), Positives = 105/347 (30%), Gaps = 67/347 (19%)

Query: 11  CPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCG------KYFQGRGTNTFAYTHSVA 64
              L  ++           CS    R N++  L  G      +YF G G N  A  H   
Sbjct: 199 AFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRE 258

Query: 65  ESHHVFLNLHTLK-----FYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLC 119
             + + + L T+       Y   ++  ++            P L                
Sbjct: 259 TGYPLAVKLGTITPDGADVYSYDEDDMVLD-----------PSLAEHLSH---------- 297

Query: 120 SVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLP 179
                    +   +      D ++ +++  +N      ++       + S      L+ P
Sbjct: 298 ---------FGIDMLKMQKTDKTMTELEIDMNQRIGEWEL------IQESGVPLKPLFGP 342

Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G  G+ N+  + Y N ++Q L  +   +  ++ ++       P   +     Q   +L  
Sbjct: 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQ-VAKLGH 401

Query: 240 KLW------------------NPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLS 281
            L                     +  +  ++P  M +A++     +F    Q D  +F  
Sbjct: 402 GLLSGEYSKPVPESGDGERVPEQKEVQDGIAPR-MFKALIGKGHPEFSTNRQQDAQEFFL 460

Query: 282 WFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKVRQ 328
             +N + R    ++  +    +        + T K+   +  + + Q
Sbjct: 461 HLINMVERNCRSSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQ 507

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 82.2 bits (203), Expect = 9e-18
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLVQRFGEL 237
           P + GL N+    Y N ILQ LC+   L DYF R      + R         + + FG +
Sbjct: 60  PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 119

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWS-RKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK 296
           M+ LW  +    ++SP +    +       QF    Q D  + L + ++ LH  LN    
Sbjct: 120 MKALWTGQY--RYISPKDFKITI--GKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADN 175

Query: 297 K 297
           +
Sbjct: 176 R 176

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
            G+ GL N+    + N ILQ L +   LRDY L+   Y R      ++   LV+ F +L+
Sbjct: 7   QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQR-LYMRDLHHGSNAHTALVEEFAKLI 65

Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           + +W   +    VSP E    +  ++  +F    Q D  +FL + L+ LH  +N    +
Sbjct: 66  QTIWT-SSPNDVVSPSEFKTQIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLR 122

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 79.6 bits (196), Expect = 6e-17
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 174 GTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQ 232
           G    PG+ GL N+    + N  LQ L +  PL DYFL++   A + R  P      + +
Sbjct: 1   GMHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAE 60

Query: 233 RFGELMRKLWNPRNFKSHVSPHEMLQAVVLWS-RKQFQFTEQSDPIDFLSWFLNTLHRAL 291
            + EL++++W+ R+  +HV+P      V       QF   +Q D  + L++ L+ LH  L
Sbjct: 61  AYAELIKQMWSGRD--AHVAPRMFKTQV--GRFAPQFSGYQQQDSQELLAFLLDGLHEDL 116

Query: 292 NGTKKK 297
           N  KKK
Sbjct: 117 NRVKKK 122

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 78.9 bits (194), Expect = 1e-16
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G VGL N+    + N +LQ L    PLRD+ LR     R + P G  +  L + F +++ 
Sbjct: 2   GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLR--RDFRQEVPGGGRAQELTEAFADVIG 59

Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK-- 297
            LW+P + ++ V+P         +    F    Q D  +FL   +  LH  +N   ++  
Sbjct: 60  ALWHPDSCEA-VNPTRFRAVFQKYV-PSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAP 117

Query: 298 ----DSSIVYKTFLGSMKVKTRKIPPVELEEKVRQRLLLTDNSY 337
               +  +      G   ++  ++   +    + +R L  ++S 
Sbjct: 118 PILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSK 161

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109

 Score = 73.9 bits (181), Expect = 1e-16
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 11 CPYLDTINR-QLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHV 69
          CP+L  +        D  + C    +    + CL C + + GR  N     H     H +
Sbjct: 7  CPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPL 66

Query: 70 FLNLHTLKFYCLPDNYEI 87
           L+   L  +C      +
Sbjct: 67 VLSYIDLSAWCYYCQAYV 84

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 100 CPYLDTINR-QLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSS 142
           CP+L  +        D  + C    +    + CL C + +    
Sbjct: 7   CPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRY 50

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 68.1 bits (166), Expect = 6e-13
 Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 28/161 (17%)

Query: 178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGEL 237
           +    GL N+    Y N  +Q +  V  L+D   R     R       + ++      +L
Sbjct: 11  MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAA-LRDL 69

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFT------EQSDPIDFLSWFLNTLHRAL 291
              +       S + P  +LQ + +    QF          Q D  +     +  L + L
Sbjct: 70  FDSMDKTS---SSIPPIILLQFLHMAF-PQFAEKGEQGQYLQQDANECWIQMMRVLQQKL 125

Query: 292 NGTKKK-----------------DSSIVYKTFLGSMKVKTR 315
              +                     S++ + F    +   +
Sbjct: 126 EAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMK 166

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 19/184 (10%)

Query: 147 KYVLNPTFTTDQIKQLDLSDKMSRAIDGTL-YLPGIVGLNNIKANDYCNVILQALCHVTP 205
            Y+ N     D I      D  ++ +  ++    G+ GL N+ +  + + ILQ L H   
Sbjct: 106 DYIGNIDLINDAILAKYWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPY 165

Query: 206 LRDYFLREINYARVK-RPPGDSSFLLVQR-FGELMRKLWNPRNFKSHVSPHEMLQAVVLW 263
              + + +I+    K R P       + +   EL   L   +   S  S +     + L 
Sbjct: 166 FIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLL 225

Query: 264 SR-----KQFQFTEQSDPIDFLSWFLNTLHRALN-----------GTKKKDSSIVYKTFL 307
           +      +      Q D  +F  + +N +H++                K+   IV+  F 
Sbjct: 226 TCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFE 285

Query: 308 GSMK 311
           GS++
Sbjct: 286 GSLE 289

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G VGL N  A  Y N +LQ L     LR      +     +      S  L      L R
Sbjct: 174 GYVGLKNQGATCYMNSLLQTLFFTNQLRKA----VYMMPTEGDDSSKSVPL-----ALQR 224

Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
             +  ++    V   ++ ++   +  +      Q D  +     L+ +   + GT  +  
Sbjct: 225 VFYELQHSDKPVGTKKLTKS---FGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG- 280

Query: 300 SIVYKTFLGSMKVKTR 315
             + K F G M    +
Sbjct: 281 -TIPKLFRGKMVSYIQ 295

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQR-FGELM 238
           G VGL N  A  Y N +LQ L     LR                  S  L +QR F EL 
Sbjct: 5   GYVGLKNQGATCYMNSLLQTLFFTNQLRKAV---YMMPTEGDDSSKSVPLALQRVFYELQ 61

Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKD 298
                       V   ++ ++   +  +      Q D  +     L+ +   + GT  + 
Sbjct: 62  HS-------DKPVGTKKLTKS---FGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEG 111

Query: 299 SSIVYKTFLGSMKVKTR 315
              + K F G M    +
Sbjct: 112 --TIPKLFRGKMVSYIQ 126

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129

 Score = 53.1 bits (127), Expect = 4e-09
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 16/94 (17%)

Query: 11  CPYLDTI----NRQLLDFDFEKLCSVSLSRINVYACLVCG------KYFQGRGTNTFAYT 60
             +  ++    N   +     K CS    R N++  L  G      +YF G G N  A  
Sbjct: 15  SKHAFSLKQLDNPARIPPCGWK-CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVE 73

Query: 61  HSVAESHHVFLNLHTL-----KFYCLPDNYEIVG 89
           H     + + + L T+       Y   ++  ++ 
Sbjct: 74  HYRETGYPLAVKLGTITPDGADVYSYDEDDMVLD 107

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126

 Score = 52.4 bits (125), Expect = 7e-09
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 10  LCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGT-NTFAYTHSVA---E 65
           +C    T N+       +K    +  + +V+ CL CG    GR +    A  H +    E
Sbjct: 30  ICQDCKTDNK-----VKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSE 84

Query: 66  SHHVFLNLHTLKFYCLPDNYEI 87
            H + L+L     +C   + E+
Sbjct: 85  PHCLVLSLDNWSVWCYVCDNEV 106

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 11/135 (8%)

Query: 182 VGLNNIKANDYCNVILQALCHVTPLRDYFLR---EINYARVKRPPGDSSFLLVQRFGELM 238
           VG  N+    Y N  LQAL  V  LRD  L        +       +    +V       
Sbjct: 25  VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 84

Query: 239 RKLWNPRNFKSHVSPHEMLQAV------VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
             L N       V P  +L  +            Q  F +Q D  +  +   +++     
Sbjct: 85  ENLQNKS--FKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG 142

Query: 293 GTKKKDSSIVYKTFL 307
               +D  I +KT +
Sbjct: 143 DKFSEDFRIQFKTTI 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 43/250 (17%), Positives = 80/250 (32%), Gaps = 64/250 (25%)

Query: 139 QDSSLDDIKYVLNPTFTTDQIKQLDLSD--KMSRAIDGTLYLPGIVGLNNIKANDYCNVI 196
                 DI  V    F    +   D  D   M ++I     +  I+   +  +      +
Sbjct: 14  HQYQYKDILSVFEDAF----VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL--RL 67

Query: 197 LQALC-HVTPLRDYFLREI---NY----ARVKRPPGDSSFLLVQRFGELMRKLWN-PRNF 247
              L      +   F+ E+   NY    + +K      S ++ + + E   +L+N  + F
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVF 126

Query: 248 -KSHVS----------------P------HEM-------LQAVVLWSRK---QFQF---- 270
            K +VS                P        +       +   V  S K   +  F    
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 271 ---TEQSDPIDFLSWFLNTLHRA-LNGTKKKDSSIVYKTFLGSMKVKTRKIPPVELEEKV 326
                 + P   L      L++   N T + D S   K  + S++ + R++    L+ K 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKP 242

Query: 327 RQR-LLLTDN 335
            +  LL+  N
Sbjct: 243 YENCLLVLLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	100.0
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	100.0
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.96
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.95
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.95
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.94
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.93
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.92
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.92
3c5k_A	109	HD6, histone deacetylase 6; HDAC6, zinc finger, ac	99.9
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.89
2uzg_A	97	Ubiquitin carboxyl-terminal hydrolase 33; UBL conj	99.86
2g45_A	129	Ubiquitin carboxyl-terminal hydrolase 5; zinc fing	99.85
2i50_A	126	Ubiquitin carboxyl-terminal hydrolase 16; alpha/be	99.81
2ida_A	102	Hypothetical protein; zinc binding protein, struct	99.81
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.56
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	88.61

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-45  Score=383.58  Aligned_cols=269  Identities=16%  Similarity=0.222  Sum_probs=186.1

Q ss_pred             CCCCCCcccccccc--cCCCcc-ccccccCCCCCeeEEeeeCceecccCC------chhHhhhhhhcCccEEEeecC---
Q psy9878           8 NRLCPYLDTINRQL--LDFDFE-KLCSVSLSRINVYACLVCGKYFQGRGT------NTFAYTHSVAESHHVFLNLHT---   75 (338)
Q Consensus         8 ~~~c~~l~~~~~~~--~~~~~~-k~C~~c~~~~~lw~CL~Cg~~~CGr~~------~~Ha~~H~~~~~H~l~v~l~t---   75 (338)
                      .+.|+|+..+.+..  ..+... ..|++|....++|+||+||+++|||+.      ++||+.|+++++|+++|++.|   
T Consensus       193 ~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~  272 (854)
T 3ihp_A          193 RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP  272 (854)
T ss_dssp             CCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred             CCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCC
Confidence            36799998665432  112222 249999999999999999999999865      899999999999999999999   


Q ss_pred             --CeEEEecCCeEEecccCCccccccchhHHHHHhhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCC
Q psy9878          76 --LKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPT  153 (338)
Q Consensus        76 --~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  153 (338)
                        ++||||+||++|.++           .+   .+++..+      ++.+..          ...++++..++....++.
T Consensus       273 ~~~~~~cy~~~~~v~~~-----------~l---~~~l~~~------gi~~~~----------~~kt~k~~~el~~~~n~~  322 (854)
T 3ihp_A          273 DGADVYSYDEDDMVLDP-----------SL---AEHLSHF------GIDMLK----------MQKTDKTMTELEIDMNQR  322 (854)
T ss_dssp             TBCCEEETTTTEECBCT-----------TH---HHHHHHT------TCCC------------------------------
T ss_pred             CCCeEEEccCCCeeeCc-----------cH---HHHHHHh------Cccccc----------ccccchhhhhhhhhhccc
Confidence              999999999999753           12   2222222      111100          001133333333333444


Q ss_pred             C-ChHHhhhcCcccccccccCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHH
Q psy9878         154 F-TTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQ  232 (338)
Q Consensus       154 ~-~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~  232 (338)
                      | ....+..-      ... -...+.+|++||.|+|||||||||||+|+++|+||++|+...+.... ..+.....++.+
T Consensus       323 ~g~~~~~~~~------g~~-l~p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-~~~~~~~~~l~~  394 (854)
T 3ihp_A          323 IGEWELIQES------GVP-LKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQ-NAPTDPTQDFST  394 (854)
T ss_dssp             ----------------------CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHH-HCCSCGGGCHHH
T ss_pred             cchhhhhccc------Ccc-cccccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhc-cccCCccccHHH
Confidence            4 21111100      000 12467899999999999999999999999999999999864432110 112234578999


Q ss_pred             HHHHHHHHHhCCC------------------CCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhccc
Q psy9878         233 RFGELMRKLWNPR------------------NFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGT  294 (338)
Q Consensus       233 ~l~~l~~~l~~~~------------------~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~  294 (338)
                      +|++|+..||++.                  ....+++|..|+..++.. ++.|.+++||||||||++|||.|++++.. 
T Consensus       395 ~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~~-  472 (854)
T 3ihp_A          395 QVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKG-HPEFSTNRQQDAQEFFLHLINMVERNCRS-  472 (854)
T ss_dssp             HHHHHHHHHHSCC---------------------CCBCCHHHHHHHTTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCTT-
T ss_pred             HHHHHHHHHhccccccccccccccccccccccCCCccChHHHHHHHhhh-ccccccccccCHHHHHHHHHHHHHHHhcc-
Confidence            9999999999754                  235689999999999987 89999999999999999999999998753 


Q ss_pred             CCCccccccccceeEEEEEEEeCCCC
Q psy9878         295 KKKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       295 ~~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                          .++|.++|+|++++++......
T Consensus       473 ----~s~i~~lF~G~l~s~i~C~~C~  494 (854)
T 3ihp_A          473 ----SENPNEVFRFLVEEKIKCLATE  494 (854)
T ss_dssp             ----SCCGGGGTCEEEEEEEEETTTT
T ss_pred             ----cCCchhhcCceEEEEEEecCCC
Confidence                3679999999999987765443

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=100.00  E-value=9.7e-45  Score=360.28  Aligned_cols=225  Identities=18%  Similarity=0.206  Sum_probs=169.4

Q ss_pred             ccccCCC--CCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHH
Q psy9878          30 CSVSLSR--INVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTIN  107 (338)
Q Consensus        30 C~~c~~~--~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~  107 (338)
                      |+.|...  .++|+||+||.++||+  ++||+.|+.+++|+++|++.++++|||+|+++|+++             +.++
T Consensus        51 C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~-------------~l~~  115 (476)
T 3mhs_A           51 CGTCHEINSGATFMCLQCGFCGCWN--HSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNI-------------DLIN  115 (476)
T ss_dssp             CTTTCCBCSSSEEEESSSSCEEETT--TTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSC-------------HHHH
T ss_pred             cccccCCCCCCceEeCCCCCCccCC--chHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccH-------------HHHH
Confidence            9999876  7999999999999986  899999999999999999999999999999999853             0111


Q ss_pred             hhhccccccceeeeecccccchhhhccCcccCCCChhhhhhhcCCCCChHHhhhcCcccccccccCCCcccCCccccccC
Q psy9878         108 RQLLDFDFEKLCSVSLSRINVYACLVCGKYFQDSSLDDIKYVLNPTFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNI  187 (338)
Q Consensus       108 ~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~Nl  187 (338)
                      ..                                        +.|.+.......        .......+.+|++||.|+
T Consensus       116 ~~----------------------------------------~~~~~~~~~~~~--------~~~~~~~~~~G~~GL~Nl  147 (476)
T 3mhs_A          116 DA----------------------------------------ILAKYWDDVCTK--------TMVPSMERRDGLSGLINM  147 (476)
T ss_dssp             TG----------------------------------------GGGGGHHHHHHH--------EECCCGGGTTCCCCCCCS
T ss_pred             HH----------------------------------------Hhhhccchhhhc--------ccCCCccCCCCCCCCCcC
Confidence            00                                        011111111111        011223456899999999


Q ss_pred             CChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCC-------CCccCHHHH---H
Q psy9878         188 KANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNF-------KSHVSPHEM---L  257 (338)
Q Consensus       188 GNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~-------~~~isP~~l---~  257 (338)
                      |||||||||||+|+++|+||++++...+.......  ....++.++|..++.++|+....       ...+.|..+   +
T Consensus       148 GNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  225 (476)
T 3mhs_A          148 GSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVR--SPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLL  225 (476)
T ss_dssp             SSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSC--CTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHH
T ss_pred             CccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCC--CcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHH
Confidence            99999999999999999999999976654333221  23467999999999999985421       124556554   4


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC-----------CCccccccccceeEEEEEEEeCCCC
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK-----------KKDSSIVYKTFLGSMKVKTRKIPPV  320 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~-----------~~~~~ii~~iF~G~l~s~t~~~~~~  320 (338)
                      ..+|.. .+.|.+++||||||||++|||.|++++....           +...++|+++|+|++++++......
T Consensus       226 ~~~~~~-~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~~C~  298 (476)
T 3mhs_A          226 TCAWKI-NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQ  298 (476)
T ss_dssp             HHHHHH-CGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECTTTC
T ss_pred             HHHHHh-ccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEECCCC
Confidence            455576 8999999999999999999999999875322           2356899999999999887655443

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.96  E-value=9e-29  Score=237.40  Aligned_cols=139  Identities=30%  Similarity=0.519  Sum_probs=116.0

Q ss_pred             cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccC-CCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHH
Q psy9878         176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVK-RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPH  254 (338)
Q Consensus       176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~  254 (338)
                      .+.+|++||.|+|||||||||||+|+|+|+|+++|+...+...+. ..+.....+++.+|+.|+..||++.  ..+++|.
T Consensus         3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~   80 (367)
T 2y6e_A            3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPR   80 (367)
T ss_dssp             -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCH
T ss_pred             CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHH
Confidence            456899999999999999999999999999999999865443332 1122234679999999999999987  5799999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------------------Cccccccccce
Q psy9878         255 EMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFL  307 (338)
Q Consensus       255 ~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------------------~~~~ii~~iF~  307 (338)
                      .|+..++.. .+.|.+++||||||||++|||.||+++....+                           ...++|.++|+
T Consensus        81 ~~~~~l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~  159 (367)
T 2y6e_A           81 MFKTQVGRF-APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFH  159 (367)
T ss_dssp             HHHHHHHHH-CGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred             HHHHHHHHh-hhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccC
Confidence            999999987 89999999999999999999999999865432                           13578999999


Q ss_pred             eEEEEEEEeC
Q psy9878         308 GSMKVKTRKI  317 (338)
Q Consensus       308 G~l~s~t~~~  317 (338)
                      |++++++...
T Consensus       160 G~l~s~~~C~  169 (367)
T 2y6e_A          160 GLFKSTLVCP  169 (367)
T ss_dssp             EEEEEEEECT
T ss_pred             cEEeeeEEeC
Confidence            9999876543

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.95  E-value=1.8e-28  Score=238.08  Aligned_cols=164  Identities=25%  Similarity=0.369  Sum_probs=118.6

Q ss_pred             CCChHHhhhcCcccccccccCCCcccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCC-CCCChhHHH
Q psy9878         153 TFTTDQIKQLDLSDKMSRAIDGTLYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRP-PGDSSFLLV  231 (338)
Q Consensus       153 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~-~~~~~~~l~  231 (338)
                      .|++.+|..++.......+.....+.+|++||.|+|||||||||||+|+++|+||++|+...+...+... +......++
T Consensus        34 ~~~~~~i~~l~~~~~~~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~  113 (396)
T 2gfo_A           34 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVA  113 (396)
T ss_dssp             --------------CGGGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHH
T ss_pred             CccccccccCccccccccCCccCCCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHH
Confidence            4666666666543211111111234689999999999999999999999999999999986544333211 111236789


Q ss_pred             HHHHHHHHHHhCCCCCCCccCHHHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------
Q psy9878         232 QRFGELMRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------  296 (338)
Q Consensus       232 ~~l~~l~~~l~~~~~~~~~isP~~l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------  296 (338)
                      .+|..+++.||++.  ..+++|..|+..++.. .+.|.+++||||||||++|||.||+++....+               
T Consensus       114 ~~~~~l~~~l~~~~--~~~i~P~~f~~~l~~~-~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~  190 (396)
T 2gfo_A          114 EEFGIIMKALWTGQ--YRYISPKDFKITIGKI-NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDF  190 (396)
T ss_dssp             HHHHHHHHHHHHSC--EEEECCHHHHHHHHHH-CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHH
T ss_pred             HHHHHHHHHHHcCC--CceECHHHHHHHHHHh-chhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence            99999999999887  5789999999999987 89999999999999999999999999865421               


Q ss_pred             ------------CccccccccceeEEEEEEEeCCC
Q psy9878         297 ------------KDSSIVYKTFLGSMKVKTRKIPP  319 (338)
Q Consensus       297 ------------~~~~ii~~iF~G~l~s~t~~~~~  319 (338)
                                  ...++|+++|+|++++++.....
T Consensus       191 ~~a~~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C  225 (396)
T 2gfo_A          191 KAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTC  225 (396)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTT
T ss_pred             hHHHHHHHHhhhccCCccchhhCcEEEEEEEeCCC
Confidence                        23578999999999998766544

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.95  E-value=3.3e-27  Score=223.78  Aligned_cols=139  Identities=26%  Similarity=0.463  Sum_probs=114.9

Q ss_pred             cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHH
Q psy9878         176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE  255 (338)
Q Consensus       176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~  255 (338)
                      ...+|++||.|+|||||||||||+|+++|+||++++...+....... .....++.++|..|++.||.... ...++|..
T Consensus         4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~-~~~~~p~~   81 (348)
T 3nhe_A            4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG-SNAHTALVEEFAKLIQTIWTSSP-NDVVSPSE   81 (348)
T ss_dssp             --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS-CCTTHHHHHHHHHHHHHHTTCCT-TCEECCHH
T ss_pred             CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC-CCcccHHHHHHHHHHHHHHcCCC-CCccCHHH
Confidence            34689999999999999999999999999999999986554333221 22357899999999999995332 67999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------------------Ccccccccccee
Q psy9878         256 MLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFLG  308 (338)
Q Consensus       256 l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------------------~~~~ii~~iF~G  308 (338)
                      |+..++.. .+.|.+++||||||||++|||.|++++.....                           ...++|+++|+|
T Consensus        82 ~~~~l~~~-~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g  160 (348)
T 3nhe_A           82 FKTQIQRY-APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVG  160 (348)
T ss_dssp             HHHHHHHH-SGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCE
T ss_pred             HHHHHHHh-hhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccce
Confidence            99999998 89999999999999999999999999865431                           234779999999


Q ss_pred             EEEEEEEeC
Q psy9878         309 SMKVKTRKI  317 (338)
Q Consensus       309 ~l~s~t~~~  317 (338)
                      +++++....
T Consensus       161 ~~~~~~~C~  169 (348)
T 3nhe_A          161 QLKSSLTCT  169 (348)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEcC
Confidence            999876643

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.94  E-value=8.8e-27  Score=221.39  Aligned_cols=134  Identities=27%  Similarity=0.462  Sum_probs=108.9

Q ss_pred             CccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878         180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA  259 (338)
Q Consensus       180 g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~  259 (338)
                      |++||.|+|||||||||||+|+++|+||++++.........  ......++..+|..|+..||.+.. ..+++|..|+..
T Consensus         2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~   78 (355)
T 3i3t_A            2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--GGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAV   78 (355)
T ss_dssp             -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHH
T ss_pred             CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcC--CCCchhHHHHHHHHHHHHHhcCCC-CCcccHHHHHHH
Confidence            78999999999999999999999999999999754433221  112245799999999999999764 368999999999


Q ss_pred             HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC------------------------------------------C
Q psy9878         260 VVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK------------------------------------------K  297 (338)
Q Consensus       260 l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~------------------------------------------~  297 (338)
                      ++.. .+.|.+++||||||||++|||.||+++....+                                          .
T Consensus        79 l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T 3i3t_A           79 FQKY-VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER  157 (355)
T ss_dssp             HHHH-CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred             HHHh-ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhc
Confidence            9987 89999999999999999999999999865432                                          1


Q ss_pred             ccccccccceeEEEEEEEeC
Q psy9878         298 DSSIVYKTFLGSMKVKTRKI  317 (338)
Q Consensus       298 ~~~ii~~iF~G~l~s~t~~~  317 (338)
                      ..++|.++|+|+++++++..
T Consensus       158 ~~s~i~~~F~g~~~~~~~C~  177 (355)
T 3i3t_A          158 EDSKIVDLFVGQLKSCLKCQ  177 (355)
T ss_dssp             CCSHHHHHHCEEEEEEEEET
T ss_pred             cCCcccccccEEEEeeEEeC
Confidence            34679999999999876543

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.93  E-value=3.2e-26  Score=222.01  Aligned_cols=140  Identities=19%  Similarity=0.201  Sum_probs=113.1

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      ..+++||.|+|||||||||||+|+|+|+||++|+........ ........+++++|+.||..||.+.   .+++|..|+
T Consensus        11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~   86 (404)
T 2ayn_A           11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRA-SGEMASAQYITAALRDLFDSMDKTS---SSIPPIILL   86 (404)
T ss_dssp             CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHH
T ss_pred             cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-CCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHH
Confidence            357789999999999999999999999999999975432101 1111235789999999999999864   689999999


Q ss_pred             HHHHhhcCCCCC------CCCCCCHHHHHHHHHHHHHHHhcccC-----------------CCccccccccceeEEEEEE
Q psy9878         258 QAVVLWSRKQFQ------FTEQSDPIDFLSWFLNTLHRALNGTK-----------------KKDSSIVYKTFLGSMKVKT  314 (338)
Q Consensus       258 ~~l~~~~~~~F~------~~~QqDA~Efl~~lLd~L~~e~~~~~-----------------~~~~~ii~~iF~G~l~s~t  314 (338)
                      ..++.. .|.|+      +++||||||||++|||.|++++....                 ....++|+++|+|++++++
T Consensus        87 ~~l~~~-~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i  165 (404)
T 2ayn_A           87 QFLHMA-FPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTM  165 (404)
T ss_dssp             HHHHHH-CGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEE
T ss_pred             HHHHHh-CchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEE
Confidence            999987 88887      58999999999999999999886543                 2345899999999999998


Q ss_pred             EeCCCCCc
Q psy9878         315 RKIPPVEL  322 (338)
Q Consensus       315 ~~~~~~~~  322 (338)
                      ........
T Consensus       166 ~C~~C~~~  173 (404)
T 2ayn_A          166 KCTESEEE  173 (404)
T ss_dssp             EESSSCCC
T ss_pred             EecCCCCc
Confidence            87665443

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.92  E-value=5.2e-25  Score=214.63  Aligned_cols=130  Identities=21%  Similarity=0.243  Sum_probs=108.9

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCC---CChhHHHHHHHHHHHHHhCCCCCCCccCHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELMRKLWNPRNFKSHVSPH  254 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~~isP~  254 (338)
                      ..+++||.|+|||||||||||+|+++|+||++|+..........+.+   ....++.++|+.||..|+.+.  ..+++|.
T Consensus        21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~p~   98 (415)
T 1vjv_A           21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPV   98 (415)
T ss_dssp             CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCH
T ss_pred             CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccCHH
Confidence            46789999999999999999999999999999997654332211110   014689999999999999876  5799999


Q ss_pred             HHHHHHHhhcCCCCC-------CCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeC
Q psy9878         255 EMLQAVVLWSRKQFQ-------FTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKI  317 (338)
Q Consensus       255 ~l~~~l~~~~~~~F~-------~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~  317 (338)
                      .|+..++.. .|.|.       +++||||||||++|||.|++++..      ++|+++|+ ++++++...
T Consensus        99 ~~~~~l~~~-~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------~~i~~~F~-~~~~~~~C~  160 (415)
T 1vjv_A           99 VLLNTLRKC-YPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------KFSEDFRI-QFKTTIKDT  160 (415)
T ss_dssp             HHHHHHHHH-CGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH------HHHTTTCE-EEEEEEEET
T ss_pred             HHHHHHHHh-CchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc------chHHHHHH-hheEEEEEC
Confidence            999999997 89998       899999999999999999999854      78999999 999876543

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.92  E-value=8.1e-25  Score=209.16  Aligned_cols=127  Identities=21%  Similarity=0.215  Sum_probs=105.7

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      .+|++||.|+|||||||||||+|+++|+||++++......      .+...++.++|+.+|..|+.+.   .+++|..|+
T Consensus         3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~   73 (353)
T 1nb8_A            3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKKLT   73 (353)
T ss_dssp             CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHH
T ss_pred             CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC---CCCCCHHHH
Confidence            4789999999999999999999999999999997643211      1123568999999999999865   579999999


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCC
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP  318 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~  318 (338)
                      ..+.   .+.|.+++||||||||++|||.|++++.+.  ...++|+++|+|++++++....
T Consensus        74 ~~~~---~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~--~~~s~i~~~F~g~~~~~i~C~~  129 (353)
T 1nb8_A           74 KSFG---WETLDSFMQHDVQELCRVLLDNVENKMKGT--CVEGTIPKLFRGKMVSYIQCKE  129 (353)
T ss_dssp             HHHT---CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS--TTTTHHHHHHCEEEEEEEEESS
T ss_pred             hhcC---CCCCCcccchhHHHHHHHHHHHHHHHhcCC--CccchhhhhceeEEEEEEEecc
Confidence            8873   478999999999999999999999988643  3457899999999998766543

>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A

Probab=99.90  E-value=3.2e-24  Score=169.96  Aligned_cols=84  Identities=19%  Similarity=0.278  Sum_probs=77.4

Q ss_pred             CCCCCCCCcccccccc-cCCCccccccccCCCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEeecCCeEEEecCC
Q psy9878           6 VVNRLCPYLDTINRQL-LDFDFEKLCSVSLSRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYCLPDN   84 (338)
Q Consensus         6 ~~~~~c~~l~~~~~~~-~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~Cy~Cd   84 (338)
                      ...+.||||.+|++.. .++|+.+.|++|.+..++|+||+||+++|||+.++||+.||++++|+++|++.++.||||+||
T Consensus         2 ~~~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd   81 (109)
T 3c5k_A            2 SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQ   81 (109)
T ss_dssp             CCBSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTT
T ss_pred             CCCCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCC
Confidence            4567899999998754 367888889999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEec
Q psy9878          85 YEIVG   89 (338)
Q Consensus        85 ~~v~~   89 (338)
                      ++|.+
T Consensus        82 ~~V~~   86 (109)
T 3c5k_A           82 AYVHH   86 (109)
T ss_dssp             EEBCC
T ss_pred             CEEec
Confidence            99974

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.89  E-value=3.8e-23  Score=207.41  Aligned_cols=129  Identities=21%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             cccCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHH
Q psy9878         176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHE  255 (338)
Q Consensus       176 ~~~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~  255 (338)
                      ...+|++||.|+||||||||+||+|+++|+||++++......      .....++.++|+.||..|+.+.   .+++|..
T Consensus       170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~  240 (522)
T 2f1z_A          170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKK  240 (522)
T ss_dssp             TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS---SCBCCTT
T ss_pred             cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC---CccCcHH
Confidence            346899999999999999999999999999999987543110      1123568899999999999865   5789999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeCC
Q psy9878         256 MLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKIP  318 (338)
Q Consensus       256 l~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~~  318 (338)
                      |+..+.   .+.|.+++||||||||++|||.|++++.+.  ...++|+++|+|++++++....
T Consensus       241 l~~~~~---~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~--~~~s~i~~lF~G~~~s~i~C~~  298 (522)
T 2f1z_A          241 LTKSFG---WETLDSFMQHDVQELCRVLLDNVENKMKGT--CVEGTIPKLFRGKMVSYIQCKE  298 (522)
T ss_dssp             HHHHTC---CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS--TTTTHHHHHHCEEEEEEECCSS
T ss_pred             HHhhcC---CccCCCcccccHHHHHHHHHHHHHhhccCC--ccccchhhheeEEEEEEEEcCC
Confidence            988762   478999999999999999999999998653  3457899999999999776543

>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A

Probab=99.85  E-value=8.5e-22  Score=160.41  Aligned_cols=80  Identities=19%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             CCCCCccccccc----ccCCCccccccccCCCCCeeEEeeeCceecccCC------chhHhhhhhhcCccEEEeecC---
Q psy9878           9 RLCPYLDTINRQ----LLDFDFEKLCSVSLSRINVYACLVCGKYFQGRGT------NTFAYTHSVAESHHVFLNLHT---   75 (338)
Q Consensus         9 ~~c~~l~~~~~~----~~~~~~~k~C~~c~~~~~lw~CL~Cg~~~CGr~~------~~Ha~~H~~~~~H~l~v~l~t---   75 (338)
                      +.|||+..+++.    .++++..+ |++|....+||+||+||+++|||+.      ++||+.||++++|+|+|++.|   
T Consensus        13 ~~C~h~~~l~q~~~~~~~~~~~~~-C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~   91 (129)
T 2g45_A           13 QVSKHAFSLKQLDNPARIPPCGWK-CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP   91 (129)
T ss_dssp             EECTTTTTCCCCSSCCCCCCCBCC-CSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred             CCCCCcCcccccccccccCCCCCc-CccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCC
Confidence            569999987764    23445444 9999999999999999999999986      999999999999999999999   


Q ss_pred             --CeEEEecCCeEEec
Q psy9878          76 --LKFYCLPDNYEIVG   89 (338)
Q Consensus        76 --~~v~Cy~Cd~~v~~   89 (338)
                        ++||||+||++|.+
T Consensus        92 ~~~~vwcY~cd~~V~d  107 (129)
T 2g45_A           92 DGADVYSYDEDDMVLD  107 (129)
T ss_dssp             TBCCEEETTTTEEEEC
T ss_pred             CCCeEEECCCCCEeEC
Confidence              69999999999985

>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=153.00  Aligned_cols=100  Identities=22%  Similarity=0.334  Sum_probs=75.7

Q ss_pred             CCCCCCCcccccc-----cccCCCccccccccCC--------------CCCeeEEeeeCceecccC-CchhHhhhhhh--
Q psy9878           7 VNRLCPYLDTINR-----QLLDFDFEKLCSVSLS--------------RINVYACLVCGKYFQGRG-TNTFAYTHSVA--   64 (338)
Q Consensus         7 ~~~~c~~l~~~~~-----~~~~~~~~k~C~~c~~--------------~~~lw~CL~Cg~~~CGr~-~~~Ha~~H~~~--   64 (338)
                      +...|||+..+..     ..+.-.....|.+|..              ..++|+||+||+++|||+ .++||+.||++  
T Consensus         3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~   82 (126)
T 2i50_A            3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPR   82 (126)
T ss_dssp             --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCC
T ss_pred             CCCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcC
Confidence            3578999984431     1111111123888875              789999999999999998 68999999998  


Q ss_pred             -cCccEEEeecCCeEEEecCCeEEecccCCccccccchhHHHHHhhh
Q psy9878          65 -ESHHVFLNLHTLKFYCLPDNYEIVGTVAGPVVNRLCPYLDTINRQL  110 (338)
Q Consensus        65 -~~H~l~v~l~t~~v~Cy~Cd~~v~~~~~~~~~~~~~~~~~~i~~~~  110 (338)
                       ++|||+|++.++.||||.||++|.++    ..+.+.+.++++++++
T Consensus        83 ~t~H~l~~~l~t~~vwCY~cd~~V~~~----~~~~l~~~v~~~~k~~  125 (126)
T 2i50_A           83 SEPHCLVLSLDNWSVWCYVCDNEVQYC----SSNQLGQVVDYVRKQA  125 (126)
T ss_dssp             SSCCCEEEETTTCCEEETTTTEEECCC----TTSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCeEEeCCCCcEEEcC----cchhHHHHHHHHHHhc
Confidence             79999999999999999999999853    3455666777776653

>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5

Probab=99.81  E-value=2.8e-20  Score=144.56  Aligned_cols=79  Identities=16%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             CCCCCcccccccccCCCccccccccCCCC----CeeEEeeeCceecccC-CchhHhhhhhhcCccEEEeec--CCeEEEe
Q psy9878           9 RLCPYLDTINRQLLDFDFEKLCSVSLSRI----NVYACLVCGKYFQGRG-TNTFAYTHSVAESHHVFLNLH--TLKFYCL   81 (338)
Q Consensus         9 ~~c~~l~~~~~~~~~~~~~k~C~~c~~~~----~lw~CL~Cg~~~CGr~-~~~Ha~~H~~~~~H~l~v~l~--t~~v~Cy   81 (338)
                      ..||||..++...-  . ...|.+|....    +||+||+||.++|||+ .++||++||++++|||++.+.  +.++|||
T Consensus         3 ~~C~Hl~~~~~~~p--~-~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY   79 (102)
T 2ida_A            3 MGCRHVAGIRTVTP--S-ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCY   79 (102)
T ss_dssp             CCCGGGGGCCCCCC--S-SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEET
T ss_pred             CcCcCccccccCCC--C-CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEc
Confidence            35999997775431  2 33499998776    9999999999999998 799999999999999988775  5789999


Q ss_pred             cCCeEEecc
Q psy9878          82 PDNYEIVGT   90 (338)
Q Consensus        82 ~Cd~~v~~~   90 (338)
                      .||++|.++
T Consensus        80 ~cd~~V~~p   88 (102)
T 2ida_A           80 VDEVMFDLS   88 (102)
T ss_dssp             TTTEEEECT
T ss_pred             CCCcEEECc
Confidence            999999754

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.56  E-value=8.8e-16  Score=144.72  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=86.9

Q ss_pred             ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHH-HHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878         181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRF-GELMRKLWNPRNFKSHVSPHEMLQA  259 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~isP~~l~~~  259 (338)
                      +.||.|+||||||||.||+|+.+|.+++.++........    ......+..+| ..+++.|-.     .++.|..++..
T Consensus         9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~----~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~   79 (374)
T 2vhf_A            9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND----VEYYSETQELLRTEIVNPLRI-----YGYVCATKIMK   79 (374)
T ss_dssp             SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS----CTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHH
T ss_pred             CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc----chhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHH
Confidence            469999999999999999999999999999875322111    11223577788 788888863     58999999999


Q ss_pred             HHhhcCCCCC-----CCCCCCHHHHHHHHHHHHHHH-hc--c---cCCCccccccccce
Q psy9878         260 VVLWSRKQFQ-----FTEQSDPIDFLSWFLNTLHRA-LN--G---TKKKDSSIVYKTFL  307 (338)
Q Consensus       260 l~~~~~~~F~-----~~~QqDA~Efl~~lLd~L~~e-~~--~---~~~~~~~ii~~iF~  307 (338)
                      |+.. .|+|+     +++||||.|||..||..|... ..  .   ......++++++|.
T Consensus        80 LR~~-~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~  137 (374)
T 2vhf_A           80 LRKI-LEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM  137 (374)
T ss_dssp             HHHH-HHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC
T ss_pred             HHHH-hHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc
Confidence            9987 78774     499999999999999999864 31  1   11112257888886

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=88.61  E-value=0.32  Score=51.09  Aligned_cols=40  Identities=25%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             ccccC----CCCCeeEEeeeCceecccCCchhHhhhhhhcCccEEEee
Q psy9878          30 CSVSL----SRINVYACLVCGKYFQGRGTNTFAYTHSVAESHHVFLNL   73 (338)
Q Consensus        30 C~~c~----~~~~lw~CL~Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l   73 (338)
                      |.-|.    +...|++||.|-.-+|    ..|+..|+..++|++++++
T Consensus        49 C~~~f~~~~~~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~i   92 (854)
T 3ihp_A           49 CAFSFDTPESEGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLHL   92 (854)
T ss_dssp             CSSSSCCTTSTTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEEE
T ss_pred             CceecCCCCCCCCeEEccccccccc----HHHHHHHHhccCCceEEEE
Confidence            77665    5568999999976666    3899999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	5e-18
d2uzga1	95	g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy	5e-18
d2uzga1	95	g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy	4e-05
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	3e-17
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	2e-15
d2g45a1	113	g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h	6e-13
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-10
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	4e-10

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 5e-18
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 3/138 (2%)

Query: 180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMR 239
           G+ GL N+    + N ILQ L +   LRDY L+ + Y R      ++   LV+ F +L++
Sbjct: 2   GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRL-YMRDLHHGSNAHTALVEEFAKLIQ 60

Query: 240 KLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDS 299
            +W        VSP E    +  ++  +F    Q D  +FL + L+ LH  +N    +  
Sbjct: 61  TIWTSSP-NDVVSPSEFKTQIQRYA-PRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPK 118

Query: 300 SIVYKTFLGSMKVKTRKI 317
           S            K R++
Sbjct: 119 SNPENLDHLPDDEKGRQM 136

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 5e-18
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 11 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACL--VCGKYFQGRGTNTFAYTHSVA 64
          CP+LD++       L+           +   N++ACL   C     G      +  HS  
Sbjct: 4  CPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQE 63

Query: 65 ESHHVFLNLHTLKFYC-LPDNYEIV 88
            H++ +NL TL+ +C        +
Sbjct: 64 TKHYLTVNLTTLRVWCYACSKEVFL 88

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 100 CPYLDTINR----QLLDFDFEKLCSVSLSRINVYACL--VCGKYFQDSS 142
           CP+LD++       L+           +   N++ACL   C       S
Sbjct: 4   CPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGES 52

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 3e-17
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKR-PPGDSSFLLVQRFGEL 237
           P + GL N+    Y N ILQ LC+   L DYF R      + R         + + FG +
Sbjct: 13  PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 72

Query: 238 MRKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKK 297
           M+ LW  +    ++SP +  +  +     QF    Q D  + L + ++ LH  LN    +
Sbjct: 73  MKALWTGQ--YRYISPKDF-KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 129

Query: 298 DS 299
             
Sbjct: 130 KR 131

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 28/162 (17%)

Query: 176 LYLPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFG 235
           + LP   GL N+    Y N  +Q +  V  L+D   R     R       + ++      
Sbjct: 1   MELP--CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAA-LR 57

Query: 236 ELMRKLWNPRNFKSHVSPHEMLQAVVLWS-----RKQFQFTEQSDPIDFLSWFLNTLHRA 290
           +L   +       S + P  +LQ + +       + +     Q D  +     +  L + 
Sbjct: 58  DLFDSMDKTS---SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK 114

Query: 291 LNGTKK-----------------KDSSIVYKTFLGSMKVKTR 315
           L   +                  K  S++ + F    +   +
Sbjct: 115 LEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMK 156

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 6e-13
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 30 CSVSLSRINVYACLVCG------KYFQGRGTNTFAYTHSVAESHHVFLNLHTL-----KF 78
          CS    R N++  L  G      +YF G G N  A  H     + + + L T+       
Sbjct: 27 CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADV 86

Query: 79 YCLPDNYEIVG 89
          Y   ++  ++ 
Sbjct: 87 YSYDEDDMVLD 97

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 29/135 (21%), Positives = 43/135 (31%), Gaps = 11/135 (8%)

Query: 182 VGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELM 238
           VG  N+    Y N  LQAL  V  LRD  L       V        +    +V       
Sbjct: 7   VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66

Query: 239 RKLWNPRNFKSHVSPHEMLQAV------VLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
             L N       V P  +L  +            Q  F +Q D  +  +   +++     
Sbjct: 67  ENLQNKS--FKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG 124

Query: 293 GTKKKDSSIVYKTFL 307
               +D  I +KT +
Sbjct: 125 DKFSEDFRIQFKTTI 139

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 12/114 (10%)

Query: 179 PGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELM 238
            G VGL N  A  Y N +LQ L     LR           +     DSS  +      + 
Sbjct: 4   TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVY------MMPTEGDDSSKSVPLALQRVF 57

Query: 239 RKLWNPRNFKSHVSPHEMLQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALN 292
            +L +       V   ++ ++   +  +      Q D  +     L+ +   + 
Sbjct: 58  YELQHS---DKPVGTKKLTKS---FGWETLDSFMQHDVQELCRVLLDNVENKMK 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.9
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.89
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.88
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.87
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.86
d2uzga1	95	Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H	99.86
d2g45a1	113	Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum	99.83
d2idaa1	102	Hypothetical protein RPA1320 {Rhodopseudomonas pal	99.75

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.4e-24  Score=197.00  Aligned_cols=139  Identities=27%  Similarity=0.432  Sum_probs=115.9

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccC-CCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVK-RPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEM  256 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~-~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l  256 (338)
                      .||++||.|+|||||||||||+|+++|+||++++...+..... .+......++..+|+.|+..|+.+.  ...++|..|
T Consensus        12 ~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~~~~~   89 (348)
T d2gfoa1          12 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDF   89 (348)
T ss_dssp             STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHH
T ss_pred             CCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHhCC--CCccccccc
Confidence            5899999999999999999999999999999998765443322 2222344689999999999999887  689999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCC---------------------------CccccccccceeE
Q psy9878         257 LQAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKK---------------------------KDSSIVYKTFLGS  309 (338)
Q Consensus       257 ~~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~---------------------------~~~~ii~~iF~G~  309 (338)
                      +..++.. .+.|.++.||||+|||.++|+.|++++.....                           ...+++.++|.|.
T Consensus        90 ~~~~~~~-~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~f~~~  168 (348)
T d2gfoa1          90 KITIGKI-NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQ  168 (348)
T ss_dssp             HHHHHHH-CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEE
T ss_pred             ccccccc-CccccCcccCCHHHHHHHHHHHHHHHhhhcccccccccccccccchhhhhhhhhhhccccCCchhHhhhhhh
Confidence            9999987 89999999999999999999999999865431                           2347889999999


Q ss_pred             EEEEEEeCCC
Q psy9878         310 MKVKTRKIPP  319 (338)
Q Consensus       310 l~s~t~~~~~  319 (338)
                      +.+.......
T Consensus       169 ~~~~~~c~~~  178 (348)
T d2gfoa1         169 FKSTVQCLTC  178 (348)
T ss_dssp             EEEEEEETTT
T ss_pred             hheeccccCC
Confidence            9887665543

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=196.76  Aligned_cols=126  Identities=21%  Similarity=0.218  Sum_probs=105.0

Q ss_pred             cCCccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         178 LPGIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       178 ~~g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      .+|++||.|+||||||||+||+|+++|+||++++......      .....++..+|+.+|..|+.+.   .++.|..++
T Consensus         3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~   73 (347)
T d1nbfa_           3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD---KPVGTKKLT   73 (347)
T ss_dssp             SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT------CCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHH
T ss_pred             CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC------CcccchHHHHHHHHHHHHhcCC---CCcChHHHH
Confidence            4899999999999999999999999999999998654321      1123568999999999999875   578999998


Q ss_pred             HHHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCccccccccceeEEEEEEEeC
Q psy9878         258 QAVVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTKKKDSSIVYKTFLGSMKVKTRKI  317 (338)
Q Consensus       258 ~~l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~~~~~~ii~~iF~G~l~s~t~~~  317 (338)
                      ..+.   .+.|..+.||||||||.+|||.|++++...  ...++|+++|+|++.++....
T Consensus        74 ~~~~---~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~--~~~~~i~~lF~g~~~~~~~C~  128 (347)
T d1nbfa_          74 KSFG---WETLDSFMQHDVQELCRVLLDNVENKMKGT--CVEGTIPKLFRGKMVSYIQCK  128 (347)
T ss_dssp             HHTT---CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS--TTTTHHHHHHCEEEEEEEEES
T ss_pred             Hhhc---hhhcchHHHHHHHHHHHHHHHHHHHHHhhc--cccccccceeceEEEEeEEeC
Confidence            8773   456889999999999999999999998654  345789999999999865543

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=187.65  Aligned_cols=133  Identities=27%  Similarity=0.514  Sum_probs=109.4

Q ss_pred             CccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHH
Q psy9878         180 GIVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQA  259 (338)
Q Consensus       180 g~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~  259 (338)
                      |++||.|+|||||||||||+|+++|+||++++...+...... ......++.++|..|++.|++... +..++|..++..
T Consensus         2 g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~-~~~i~p~~~~~~   79 (336)
T d2hd5a1           2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH-GSNAHTALVEEFAKLIQTIWTSSP-NDVVSPSEFKTQ   79 (336)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC----CCSSCCHHHHHHHHHHHHHHTSCT-TCEECCHHHHHH
T ss_pred             CccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhccc-CCChhHHHHHHHHHHHHHHHhCCC-CCCCCchhhhcc
Confidence            899999999999999999999999999999987654433222 222346899999999999998764 678999999999


Q ss_pred             HHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcccC---------------------------CCccccccccceeEEEE
Q psy9878         260 VVLWSRKQFQFTEQSDPIDFLSWFLNTLHRALNGTK---------------------------KKDSSIVYKTFLGSMKV  312 (338)
Q Consensus       260 l~~~~~~~F~~~~QqDA~Efl~~lLd~L~~e~~~~~---------------------------~~~~~ii~~iF~G~l~s  312 (338)
                      ++.. .+.|..+.||||+||+.+|+|.|++++....                           ....+.|...|.+++..
T Consensus        80 ~~~~-~~~~~~~~q~Da~Ef~~~lld~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~  158 (336)
T d2hd5a1          80 IQRY-APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKS  158 (336)
T ss_dssp             HHHH-CGGGSSCCCBCHHHHHHHHHHHHHHHTCCC------------CCCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEE
T ss_pred             cccc-cccccCcccccHHHHHHHHHHHHHHHHhhhhcccccCccccccccchhhHHHHHHhhhccccchhhhhhhhheee
Confidence            9987 8999999999999999999999999986532                           13457788889998876


Q ss_pred             EEE
Q psy9878         313 KTR  315 (338)
Q Consensus       313 ~t~  315 (338)
                      ...
T Consensus       159 ~~~  161 (336)
T d2hd5a1         159 SLT  161 (336)
T ss_dssp             EEE
T ss_pred             eee
Confidence            544

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.5e-23  Score=192.06  Aligned_cols=134  Identities=19%  Similarity=0.197  Sum_probs=105.1

Q ss_pred             cccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCCCChhHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Q psy9878         182 VGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPGDSSFLLVQRFGELMRKLWNPRNFKSHVSPHEMLQAVV  261 (338)
Q Consensus       182 ~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~~~l~  261 (338)
                      +||.|+|||||||||||+|+++|+||++++.......... ......++.++|+.||..|+...   ..+.|..++..+.
T Consensus         5 ~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~---~~~~p~~~~~~l~   80 (383)
T d2ayna1           5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASG-EMASAQYITAALRDLFDSMDKTS---SSIPPIILLQFLH   80 (383)
T ss_dssp             CEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHHHHH
T ss_pred             cCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCC-ccccHHHHHHHHHHHHHHHhcCC---CccCHHHHHHHHH
Confidence            7999999999999999999999999999987543321111 12235678999999999998754   6899999999998


Q ss_pred             hhcCCC------CCCCCCCCHHHHHHHHHHHHHHHhcccCC-----------------CccccccccceeEEEEEEEeCC
Q psy9878         262 LWSRKQ------FQFTEQSDPIDFLSWFLNTLHRALNGTKK-----------------KDSSIVYKTFLGSMKVKTRKIP  318 (338)
Q Consensus       262 ~~~~~~------F~~~~QqDA~Efl~~lLd~L~~e~~~~~~-----------------~~~~ii~~iF~G~l~s~t~~~~  318 (338)
                      .. .+.      +.++.|||||||+.+||+.|++++.....                 ...++|.++|+|+++++.....
T Consensus        81 ~~-~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~  159 (383)
T d2ayna1          81 MA-FPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTE  159 (383)
T ss_dssp             HH-CGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESS
T ss_pred             HH-hHhhccccccCchhhhhHHHHHHHHHHHHHHHHHhhhccccccccchhhhhcccccCCCeeeeeeeEEEEEEEEecC
Confidence            76 444      45667999999999999999998765431                 3468899999999999876655


Q ss_pred             CC
Q psy9878         319 PV  320 (338)
Q Consensus       319 ~~  320 (338)
                      ..
T Consensus       160 c~  161 (383)
T d2ayna1         160 SE  161 (383)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=6.7e-22  Score=185.96  Aligned_cols=110  Identities=24%  Similarity=0.294  Sum_probs=89.2

Q ss_pred             ccccccCCChhHHHHHHHHHhcChHHHHHHhchhhhhccCCCCC---CChhHHHHHHHHHHHHHhCCCCCCCccCHHHHH
Q psy9878         181 IVGLNNIKANDYCNVILQALCHVTPLRDYFLREINYARVKRPPG---DSSFLLVQRFGELMRKLWNPRNFKSHVSPHEML  257 (338)
Q Consensus       181 ~~GL~NlGNTCy~NsvLQ~L~~~~~~r~~ll~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~~~~~~~isP~~l~  257 (338)
                      ++||.|+|||||||||||+|+++|+|+++|+.............   .....++.+|.+||..|+.+.  ...++|..|+
T Consensus         6 p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~i~p~~~~   83 (397)
T d1vjva_           6 PVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPVVLL   83 (397)
T ss_dssp             CCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCHHHH
T ss_pred             CCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccccccchHHHHHHHHHHHHHHHHhCC--CCccCHHHHH
Confidence            47999999999999999999999999999987654432222111   123478899999999999987  6789999999


Q ss_pred             HHHHhhcCCCC-------CCCCCCCHHHHHHHHHHHHHHHhcc
Q psy9878         258 QAVVLWSRKQF-------QFTEQSDPIDFLSWFLNTLHRALNG  293 (338)
Q Consensus       258 ~~l~~~~~~~F-------~~~~QqDA~Efl~~lLd~L~~e~~~  293 (338)
                      ..|+.. .+.|       .++.||||||||.+|++.|++++..
T Consensus        84 ~~l~~~-~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~  125 (397)
T d1vjva_          84 NTLRKC-YPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD  125 (397)
T ss_dssp             HHHHHH-CGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHH-hhhhccccccccccccccHHHHHHHHHHHHHHHhcc
Confidence            999876 5555       5789999999999999999998754

>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6e-23  Score=156.98  Aligned_cols=82  Identities=26%  Similarity=0.450  Sum_probs=69.7

Q ss_pred             CCCCCCccccccc----ccCCCccccccccCCC-CCeeEEee--eCceecccCCchhHhhhhhhcCccEEEeecCCeEEE
Q psy9878           8 NRLCPYLDTINRQ----LLDFDFEKLCSVSLSR-INVYACLV--CGKYFQGRGTNTFAYTHSVAESHHVFLNLHTLKFYC   80 (338)
Q Consensus         8 ~~~c~~l~~~~~~----~~~~~~~k~C~~c~~~-~~lw~CL~--Cg~~~CGr~~~~Ha~~H~~~~~H~l~v~l~t~~v~C   80 (338)
                      .+.||||..+++.    +++.... .|.+|... +++|+||+  ||+++|||+.++||+.||++++|+++|++.++.|||
T Consensus         1 r~~CpHl~~~~~~~~~~~~~~~~~-~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~~~H~~~~~l~t~~vwC   79 (95)
T d2uzga1           1 RNHCPHLDSVGEITKEDLIQKSLG-TCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWC   79 (95)
T ss_dssp             CCSCHHHHHSCCCCHHHHHHHTTT-CCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEE
T ss_pred             CCCCCCcChhhhcchhhhcCcCCC-eeecCCCCCCCEEEeccccCCcEEccCCcCcHHHHHHhhhCCCEEEECCCCeEEE
Confidence            3689999977652    2333333 39999864 68999996  999999999999999999999999999999999999


Q ss_pred             ecCCeEEecc
Q psy9878          81 LPDNYEIVGT   90 (338)
Q Consensus        81 y~Cd~~v~~~   90 (338)
                      |.||++|+.+
T Consensus        80 y~Cd~~v~~d   89 (95)
T d2uzga1          80 YACSKEVFLD   89 (95)
T ss_dssp             TTTTEEECCC
T ss_pred             CCCCCEEEcC
Confidence            9999999844

>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 5, UBP5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-21  Score=152.70  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             CCCCCcccccccc--cCCCcccc-ccccCCCCCeeEEeeeCceecccCC------chhHhhhhhhcCccEEEeecCC---
Q psy9878           9 RLCPYLDTINRQL--LDFDFEKL-CSVSLSRINVYACLVCGKYFQGRGT------NTFAYTHSVAESHHVFLNLHTL---   76 (338)
Q Consensus         9 ~~c~~l~~~~~~~--~~~~~~k~-C~~c~~~~~lw~CL~Cg~~~CGr~~------~~Ha~~H~~~~~H~l~v~l~t~---   76 (338)
                      +.|+|+..+.+..  ..+..+.+ |.+|.+..++|+||+||+++|||+.      ++||+.||++++|+++|++.|.   
T Consensus         3 ~~~~h~~~l~q~~~~~~~~p~~~~C~~C~~~~~lWlCL~CG~vgCgR~~~~~~~~~~HA~~H~~~t~H~l~v~l~t~~~~   82 (113)
T d2g45a1           3 QVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPD   82 (113)
T ss_dssp             EECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTT
T ss_pred             ccChhhcchhhccCCccCCCCCCcccCCCCcCCEEEEecCCCCccCcccccCCCCChHHHHHHHhcCCCEEEEecCCCCC
Confidence            4577887665421  12222333 9999999999999999999999964      8999999999999999999774   


Q ss_pred             --eEEEecCCeEEecc
Q psy9878          77 --KFYCLPDNYEIVGT   90 (338)
Q Consensus        77 --~v~Cy~Cd~~v~~~   90 (338)
                        +||||+||++|.++
T Consensus        83 ~~~vwCY~cd~~V~dp   98 (113)
T d2g45a1          83 GADVYSYDEDDMVLDP   98 (113)
T ss_dssp             BCCEEETTTTEEEECT
T ss_pred             CceEEEecCCCEEECh
Confidence              69999999999853

>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Hypothetical protein RPA1320
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.75  E-value=4e-19  Score=136.55  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             CCCCCCcccccccccCCCccccccccCCCCCee----EEeeeCceec-ccCCchhHhhhhhhcCccEEEeec--CCeEEE
Q psy9878           8 NRLCPYLDTINRQLLDFDFEKLCSVSLSRINVY----ACLVCGKYFQ-GRGTNTFAYTHSVAESHHVFLNLH--TLKFYC   80 (338)
Q Consensus         8 ~~~c~~l~~~~~~~~~~~~~k~C~~c~~~~~lw----~CL~Cg~~~C-Gr~~~~Ha~~H~~~~~H~l~v~l~--t~~v~C   80 (338)
                      ...||||++++...  -. ...|.+|....++|    +||+||+++| |++.++||+.||++++||++++++  +..+||
T Consensus         2 ~~~C~Hl~~~~~~~--p~-~~~C~~C~~~~~~W~~L~lCL~CG~vgC~~~~~~~Ha~~H~~~t~Hpl~~sl~~~~~~vwC   78 (102)
T d2idaa1           2 TMGCRHVAGIRTVT--PS-ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWC   78 (102)
T ss_dssp             CCCCGGGGGCCCCC--CS-SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEE
T ss_pred             CCCCcCccccccCC--CC-CCCcccccCCCCcccccccccccCCEecCCCCcccHHHHHHHhcCCCeEEEecCCCceEEe
Confidence            36899999665432  11 23399998877666    7999999999 578899999999999999999996  567999


Q ss_pred             ecCCeEEecc
Q psy9878          81 LPDNYEIVGT   90 (338)
Q Consensus        81 y~Cd~~v~~~   90 (338)
                      |.||.+|..+
T Consensus        79 Y~~d~~v~~p   88 (102)
T d2idaa1          79 YVDEVMFDLS   88 (102)
T ss_dssp             TTTTEEEECT
T ss_pred             ecCcceeeCC
Confidence            9999999743