Psyllid ID: psy9896

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSALSTIKL
ccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEEEEEccEEccccEEEEccccccEEEEEEEcccccccHHHHHccccEEEEEEEEcccEEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHcccc
cHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccccEEEEEEEccEEccccEEEEEcccccEEEEHHHHcccccHHHEEEccccccHHHHHHHHcEEEEcccHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHccc
MESAMREIQYCQTFLKKRLMFKNELQATVLEvkaipglgttidTILVngtlyegdtvvlagtdgpiVTQIRSllmpqpmqelRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSALSTIKL
MESAMREIQYCQTFLKKRLMFKNELQATVLevkaipglgtTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKikgtqgvkiaAKDLEKTIAGLnlrvakdqdeIDDLCDEVARELKSALSTIKL
MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSALSTIKL
*******IQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCD***************
MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSALSTIKL
MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVAREL*********
MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSALSTIKL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESAMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAxxxxxxxxxxxxxxxxxxxxxIDDLCDEVARELKSALSTIKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
O60841 1220 Eukaryotic translation in yes N/A 0.951 0.113 0.594 2e-40
Q5RDE1 1220 Eukaryotic translation in yes N/A 0.951 0.113 0.594 2e-40
Q05D44 1216 Eukaryotic translation in yes N/A 0.951 0.113 0.594 3e-40
B2GUV7 1216 Eukaryotic translation in yes N/A 0.951 0.113 0.594 4e-40
Q54XP6 1045 Eukaryotic translation in yes N/A 0.937 0.130 0.470 1e-30
Q10251 1079 Eukaryotic translation in yes N/A 0.765 0.102 0.558 2e-29
P39730 1002 Eukaryotic translation in yes N/A 0.737 0.106 0.560 3e-29
A3DMS0 606 Probable translation init yes N/A 0.882 0.211 0.430 5e-24
A2BJZ8 612 Probable translation init yes N/A 0.882 0.209 0.384 2e-22
A8A8D3 609 Probable translation init yes N/A 0.896 0.213 0.366 2e-22
>sp|O60841|IF2P_HUMAN Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4 Back     alignment and function desciption
 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 104/138 (75%)

Query: 8   IQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIV 67
           ++  QT L KRL    EL+A V+EVKA+PG+GTTID IL+NG L EGDT+++ G +GPIV
Sbjct: 839 VELTQTMLSKRLAHCEELRAQVMEVKALPGMGTTIDVILINGRLKEGDTIIVPGVEGPIV 898

Query: 68  TQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDD 127
           TQIR LL+P PM+ELRVKN Y ++K+++  QGVKI  KDLEKT+AGL L VA  +DEI  
Sbjct: 899 TQIRGLLLPPPMKELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPV 958

Query: 128 LCDEVARELKSALSTIKL 145
           L DE+  ELK  L+ IKL
Sbjct: 959 LKDELIHELKQTLNAIKL 976
Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
Homo sapiens (taxid: 9606)
>sp|Q5RDE1|IF2P_PONAB Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2 Back     alignment and function description
>sp|Q05D44|IF2P_MOUSE Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2 Back     alignment and function description
>sp|B2GUV7|IF2P_RAT Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1 Back     alignment and function description
>sp|Q54XP6|IF2P_DICDI Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1 Back     alignment and function description
>sp|Q10251|IF2P_SCHPO Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1 Back     alignment and function description
>sp|P39730|IF2P_YEAST Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUN12 PE=1 SV=2 Back     alignment and function description
>sp|A3DMS0|IF2P_STAMF Probable translation initiation factor IF-2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=infB PE=3 SV=1 Back     alignment and function description
>sp|A2BJZ8|IF2P_HYPBU Probable translation initiation factor IF-2 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=infB PE=3 SV=1 Back     alignment and function description
>sp|A8A8D3|IF2P_IGNH4 Probable translation initiation factor IF-2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=infB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
91080893 1106 PREDICTED: similar to AGAP004824-PA [Tri 0.951 0.124 0.768 2e-53
195013303 1150 GH15356 [Drosophila grimshawi] gi|193897 0.937 0.118 0.764 3e-53
357626559 1178 hypothetical protein KGM_03313 [Danaus p 0.951 0.117 0.760 6e-53
194866106 1141 GG14257 [Drosophila erecta] gi|190653542 0.937 0.119 0.757 1e-52
386770502 1090 eIF5B, isoform D [Drosophila melanogaste 0.937 0.124 0.75 1e-52
195125988 1175 GI12960 [Drosophila mojavensis] gi|19391 0.937 0.115 0.764 1e-52
386770504 1108 eIF5B, isoform E [Drosophila melanogaste 0.937 0.122 0.75 1e-52
195337174 1056 GM14051 [Drosophila sechellia] gi|194128 0.937 0.128 0.75 2e-52
24656849 1144 eIF5B, isoform B [Drosophila melanogaste 0.937 0.118 0.75 2e-52
443906781 1142 LD42524p1 [Drosophila melanogaster] 0.937 0.119 0.75 2e-52
>gi|91080893|ref|XP_973325.1| PREDICTED: similar to AGAP004824-PA [Tribolium castaneum] gi|270005394|gb|EFA01842.1| hypothetical protein TcasGA2_TC007444 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 122/138 (88%)

Query: 8   IQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIV 67
           +++CQT L KRLM+ +ELQATVLEVKAIPGLGTTID ILVNGTL EGDT+V AGTDG IV
Sbjct: 725 VEFCQTKLPKRLMYSDELQATVLEVKAIPGLGTTIDVILVNGTLREGDTMVCAGTDGAIV 784

Query: 68  TQIRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDD 127
           TQIRSLLMPQP++ELRVKNAYVEYK++K  QGVKIAAK+LEK IAGLNL VA+  DE++ 
Sbjct: 785 TQIRSLLMPQPLRELRVKNAYVEYKEVKAAQGVKIAAKELEKAIAGLNLFVAQKSDEVEI 844

Query: 128 LCDEVARELKSALSTIKL 145
           L +EV+RELKSALS IKL
Sbjct: 845 LREEVSRELKSALSNIKL 862

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195013303|ref|XP_001983830.1| GH15356 [Drosophila grimshawi] gi|193897312|gb|EDV96178.1| GH15356 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|357626559|gb|EHJ76611.1| hypothetical protein KGM_03313 [Danaus plexippus] Back     alignment and taxonomy information
>gi|194866106|ref|XP_001971759.1| GG14257 [Drosophila erecta] gi|190653542|gb|EDV50785.1| GG14257 [Drosophila erecta] Back     alignment and taxonomy information
>gi|386770502|ref|NP_001246600.1| eIF5B, isoform D [Drosophila melanogaster] gi|383291728|gb|AFH04271.1| eIF5B, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195125988|ref|XP_002007456.1| GI12960 [Drosophila mojavensis] gi|193919065|gb|EDW17932.1| GI12960 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|386770504|ref|NP_001246601.1| eIF5B, isoform E [Drosophila melanogaster] gi|383291729|gb|AFH04272.1| eIF5B, isoform E [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195337174|ref|XP_002035204.1| GM14051 [Drosophila sechellia] gi|194128297|gb|EDW50340.1| GM14051 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|24656849|ref|NP_651974.1| eIF5B, isoform B [Drosophila melanogaster] gi|386770500|ref|NP_001246599.1| eIF5B, isoform C [Drosophila melanogaster] gi|386770506|ref|NP_001246602.1| eIF5B, isoform F [Drosophila melanogaster] gi|23092924|gb|AAF47774.2| eIF5B, isoform B [Drosophila melanogaster] gi|383291727|gb|AFH04270.1| eIF5B, isoform C [Drosophila melanogaster] gi|383291730|gb|AFH04273.1| eIF5B, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|443906781|gb|AGD79331.1| LD42524p1 [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
FB|FBgn0026259 1144 eIF5B "eIF5B" [Drosophila mela 0.937 0.118 0.75 5.5e-48
RGD|735017 388 Eif5b "eukaryotic translation 0.951 0.355 0.594 2.6e-38
UNIPROTKB|J9P504 1219 EIF5B "Uncharacterized protein 0.951 0.113 0.594 3.2e-37
UNIPROTKB|I3L8K4 1219 EIF5B "Uncharacterized protein 0.951 0.113 0.594 3.2e-37
UNIPROTKB|O60841 1220 EIF5B "Eukaryotic translation 0.951 0.113 0.594 3.2e-37
UNIPROTKB|F1STE8 1220 EIF5B "Uncharacterized protein 0.951 0.113 0.594 3.2e-37
UNIPROTKB|F1PMA6 1221 EIF5B "Uncharacterized protein 0.951 0.113 0.594 3.2e-37
MGI|MGI:2441772 1216 Eif5b "eukaryotic translation 0.951 0.113 0.594 5.2e-37
RGD|1591046 1216 Eif5b-ps1 "eukaryotic translat 0.951 0.113 0.594 5.2e-37
UNIPROTKB|F1N6Y7 1220 EIF5B "Uncharacterized protein 0.951 0.113 0.586 6.7e-37
FB|FBgn0026259 eIF5B "eIF5B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 512 (185.3 bits), Expect = 5.5e-48, P = 5.5e-48
 Identities = 102/136 (75%), Positives = 116/136 (85%)

Query:    10 YCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQ 69
             +CQ  L KRLM+  ELQATVLEVKA+PGLGTTID IL+NG L EG T+V+AGTDGPIVTQ
Sbjct:   765 FCQNMLAKRLMYSEELQATVLEVKALPGLGTTIDAILINGKLREGQTMVVAGTDGPIVTQ 824

Query:    70 IRSLLMPQPMQELRVKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLC 129
             IRSLLMPQPM+ELRVKNAYVEYK++K  QGVKIAAKDLEK IAG+NL +A   DE++   
Sbjct:   825 IRSLLMPQPMKELRVKNAYVEYKEVKAAQGVKIAAKDLEKAIAGINLLIAHKPDEVEICT 884

Query:   130 DEVARELKSALSTIKL 145
             +EVARELKSALS IKL
Sbjct:   885 EEVARELKSALSHIKL 900
GO:0005829 "cytosol" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=ISS
GO:0017151 "DEAD/H-box RNA helicase binding" evidence=TAS
GO:0005525 "GTP binding" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
RGD|735017 Eif5b "eukaryotic translation initiation factor 5B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9P504 EIF5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3L8K4 EIF5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O60841 EIF5B "Eukaryotic translation initiation factor 5B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1STE8 EIF5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PMA6 EIF5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2441772 Eif5b "eukaryotic translation initiation factor 5B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1591046 Eif5b-ps1 "eukaryotic translation initiation factor 5B, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N6Y7 EIF5B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O60841IF2P_HUMANNo assigned EC number0.59420.95170.1131yesN/A
P39730IF2P_YEASTNo assigned EC number0.56070.73790.1067yesN/A
Q5RDE1IF2P_PONABNo assigned EC number0.59420.95170.1131yesN/A
Q05D44IF2P_MOUSENo assigned EC number0.59420.95170.1134yesN/A
Q10251IF2P_SCHPONo assigned EC number0.55850.76550.1028yesN/A
B2GUV7IF2P_RATNo assigned EC number0.59420.95170.1134yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
cd03703110 cd03703, aeIF5B_II, aeIF5B_II: This family represe 5e-55
PRK04004 586 PRK04004, PRK04004, translation initiation factor 1e-36
PRK14845 1049 PRK14845, PRK14845, translation initiation factor 1e-27
TIGR00491 590 TIGR00491, aIF-2, translation initiation factor aI 2e-23
cd0370195 cd03701, IF2_IF5B_II, IF2_IF5B_II: This family rep 4e-22
COG0532 509 COG0532, InfB, Translation initiation factor 2 (IF 1e-21
cd0134283 cd01342, Translation_Factor_II_like, Translation_F 2e-07
pfam0314470 pfam03144, GTP_EFTU_D2, Elongation factor Tu domai 6e-04
>gnl|CDD|239674 cd03703, aeIF5B_II, aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B Back     alignment and domain information 
 Score =  167 bits (426), Expect = 5e-55
 Identities = 64/110 (58%), Positives = 82/110 (74%)

Query: 25  LQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELRV 84
           LQ TVLEVK   GLGTTID IL +GTL EGDT+V+ G +GPIVT++R+LL PQP++ELRV
Sbjct: 1   LQGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRV 60

Query: 85  KNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVAR 134
           K+ ++  K++K   GVKI A DLEK IAG  L V   +DEI++L +EV  
Sbjct: 61  KSRFIHVKEVKAAAGVKILAPDLEKAIAGSPLLVVGPEDEIEELKEEVME 110

aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma. Length = 110
>gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated Back     alignment and domain information
>gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional Back     alignment and domain information
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 Back     alignment and domain information
>gnl|CDD|239672 cd03701, IF2_IF5B_II, IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B Back     alignment and domain information
>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins Back     alignment and domain information
>gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 145
KOG1144|consensus 1064 100.0
cd03703110 aeIF5B_II aeIF5B_II: This family represents the do 100.0
PRK14845 1049 translation initiation factor IF-2; Provisional 100.0
TIGR00491 590 aIF-2 translation initiation factor aIF-2/yIF-2. T 99.97
PRK04004 586 translation initiation factor IF-2; Validated 99.95
cd0370295 IF2_mtIF2_II This family represents the domain II 99.91
COG0532 509 InfB Translation initiation factor 2 (IF-2; GTPase 99.91
cd0370195 IF2_IF5B_II IF2_IF5B_II: This family represents th 99.88
TIGR00487 587 IF-2 translation initiation factor IF-2. This mode 99.64
KOG1145|consensus 683 99.54
PRK05306 787 infB translation initiation factor IF-2; Validated 99.37
CHL00189 742 infB translation initiation factor 2; Provisional 99.35
PF0314474 GTP_EFTU_D2: Elongation factor Tu domain 2; InterP 98.23
cd0134283 Translation_Factor_II_like Translation_Factor_II_l 98.18
cd0369186 BipA_TypA_II BipA_TypA_II: domain II of BipA (also 96.93
cd0369787 EFTU_II EFTU_II: Elongation factor Tu domain II. E 96.61
PLN03127447 Elongation factor Tu; Provisional 96.56
PRK12735396 elongation factor Tu; Reviewed 96.56
TIGR01394 594 TypA_BipA GTP-binding protein TypA/BipA. This bact 96.48
cd0369284 mtIF2_IVc mtIF2_IVc: this family represents the C2 96.44
PRK00049396 elongation factor Tu; Reviewed 96.32
cd0369487 GTPBP_II Domain II of the GP-1 family of GTPase. T 96.29
PRK12736394 elongation factor Tu; Reviewed 96.26
PTZ00141 446 elongation factor 1- alpha; Provisional 96.26
CHL00071409 tufA elongation factor Tu 96.24
TIGR00475 581 selB selenocysteine-specific elongation factor Sel 96.22
cd0369391 EF1_alpha_II EF1_alpha_II: this family represents 96.18
TIGR00490 720 aEF-2 translation elongation factor aEF-2. This mo 96.16
PRK10512 614 selenocysteinyl-tRNA-specific translation factor; 96.1
cd0408883 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen 96.05
PRK12317425 elongation factor 1-alpha; Reviewed 96.04
TIGR00483426 EF-1_alpha translation elongation factor EF-1 alph 95.92
cd0369683 selB_II selB_II: this subfamily represents the dom 95.88
cd0369085 Tet_II Tet_II: This subfamily represents domain II 95.86
cd0369883 eRF3_II_like eRF3_II_like: domain similar to domai 95.8
PRK05433 600 GTP-binding protein LepA; Provisional 95.72
PLN03126478 Elongation factor Tu; Provisional 95.55
cd0369581 CysN_NodQ_II CysN_NodQ_II: This subfamily represen 95.51
TIGR00485394 EF-Tu translation elongation factor TU. This align 95.4
TIGR01393 595 lepA GTP-binding protein LepA. LepA (GUF1 in Sacca 95.31
PRK04004586 translation initiation factor IF-2; Validated 95.29
PLN00043 447 elongation factor 1-alpha; Provisional 95.28
cd0409283 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri 95.2
TIGR00491590 aIF-2 translation initiation factor aIF-2/yIF-2. T 94.96
cd0368985 RF3_II RF3_II: this subfamily represents the domai 94.81
COG0532509 InfB Translation initiation factor 2 (IF-2; GTPase 94.76
cd0409181 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri 94.6
cd0369986 lepA_II lepA_II: This subfamily represents the dom 94.57
PRK13351 687 elongation factor G; Reviewed 94.56
PRK10218 607 GTP-binding protein; Provisional 94.21
cd0408982 eRF3_II eRF3_II: domain II of the eukaryotic class 94.06
PRK12740 668 elongation factor G; Reviewed 94.0
PRK148451049 translation initiation factor IF-2; Provisional 93.97
PF1457881 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1 93.81
PRK07560 731 elongation factor EF-2; Reviewed 93.8
PTZ00327460 eukaryotic translation initiation factor 2 gamma s 92.47
TIGR00487587 IF-2 translation initiation factor IF-2. This mode 92.18
TIGR03680406 eif2g_arch translation initiation factor 2 subunit 91.6
PRK04000411 translation initiation factor IF-2 subunit gamma; 91.59
PRK05306787 infB translation initiation factor IF-2; Validated 90.74
cd0409094 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C termina 90.37
cd03688113 eIF2_gamma_II eIF2_gamma_II: this subfamily repres 90.07
TIGR02034406 CysN sulfate adenylyltransferase, large subunit. H 89.3
COG5258527 GTPBP1 GTPase [General function prediction only] 88.52
cd0370093 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfami 88.16
CHL00189742 infB translation initiation factor 2; Provisional 88.11
TIGR00484 689 EF-G translation elongation factor EF-G. After pep 87.34
PRK05124 474 cysN sulfate adenylyltransferase subunit 1; Provis 86.74
PRK12739 691 elongation factor G; Reviewed 85.5
PRK05506 632 bifunctional sulfate adenylyltransferase subunit 1 85.29
COG3276 447 SelB Selenocysteine-specific translation elongatio 84.65
PRK00007 693 elongation factor G; Reviewed 83.89
COG5256428 TEF1 Translation elongation factor EF-1alpha (GTPa 81.43
>KOG1144|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-47  Score=355.70  Aligned_cols=142  Identities=53%  Similarity=0.787  Sum_probs=139.7

Q ss_pred             hhhHHHHHHHHHHhhcCccCcceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhc
Q psy9896           4 AMREIQYCQTFLKKRLMFKNELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR   83 (145)
Q Consensus         4 ~~~l~gl~Q~~m~~~L~~~~~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R   83 (145)
                      +.+|+.|||++|.+||+|.++++|||||||..+|+|+||||||+||+||.||+||+||++|||+|.||+||+|+||+|||
T Consensus       679 l~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElR  758 (1064)
T KOG1144|consen  679 LLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELR  758 (1064)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeceeecCcCeEEecCCCCcccCCCeEEEecCcccHHHHHHHHHHHHHHHhhhccC
Q psy9896          84 VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSALSTIKL  145 (145)
Q Consensus        84 ~k~~~~~~~~v~aa~gVkI~a~~Le~~~AGs~l~vv~~~~e~e~~~~ev~~e~~~~~~~i~~  145 (145)
                      +++.|.||++++||+||||.|.|||+++||++|+|+.++||++.+++++|++++++|++|++
T Consensus       759 Vk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~  820 (1064)
T KOG1144|consen  759 VKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVVGPEDDIEELKEEAMEDLESVLSRIDK  820 (1064)
T ss_pred             cccceeehhHhhhhccchhhhcchHHHhcCCeeEEeCCcccHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999975

>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B Back     alignment and domain information
>PRK14845 translation initiation factor IF-2; Provisional Back     alignment and domain information
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 Back     alignment and domain information
>PRK04004 translation initiation factor IF-2; Validated Back     alignment and domain information
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 Back     alignment and domain information
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B Back     alignment and domain information
>TIGR00487 IF-2 translation initiation factor IF-2 Back     alignment and domain information
>KOG1145|consensus Back     alignment and domain information
>PRK05306 infB translation initiation factor IF-2; Validated Back     alignment and domain information
>CHL00189 infB translation initiation factor 2; Provisional Back     alignment and domain information
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins Back     alignment and domain information
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu Back     alignment and domain information
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II Back     alignment and domain information
>PLN03127 Elongation factor Tu; Provisional Back     alignment and domain information
>PRK12735 elongation factor Tu; Reviewed Back     alignment and domain information
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA Back     alignment and domain information
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu Back     alignment and domain information
>PRK00049 elongation factor Tu; Reviewed Back     alignment and domain information
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase Back     alignment and domain information
>PRK12736 elongation factor Tu; Reviewed Back     alignment and domain information
>PTZ00141 elongation factor 1- alpha; Provisional Back     alignment and domain information
>CHL00071 tufA elongation factor Tu Back     alignment and domain information
>TIGR00475 selB selenocysteine-specific elongation factor SelB Back     alignment and domain information
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages Back     alignment and domain information
>TIGR00490 aEF-2 translation elongation factor aEF-2 Back     alignment and domain information
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes Back     alignment and domain information
>PRK12317 elongation factor 1-alpha; Reviewed Back     alignment and domain information
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha Back     alignment and domain information
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu Back     alignment and domain information
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) Back     alignment and domain information
>PRK05433 GTP-binding protein LepA; Provisional Back     alignment and domain information
>PLN03126 Elongation factor Tu; Provisional Back     alignment and domain information
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu Back     alignment and domain information
>TIGR00485 EF-Tu translation elongation factor TU Back     alignment and domain information
>TIGR01393 lepA GTP-binding protein LepA Back     alignment and domain information
>PRK04004 translation initiation factor IF-2; Validated Back     alignment and domain information
>PLN00043 elongation factor 1-alpha; Provisional Back     alignment and domain information
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes Back     alignment and domain information
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 Back     alignment and domain information
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) Back     alignment and domain information
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes Back     alignment and domain information
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane Back     alignment and domain information
>PRK13351 elongation factor G; Reviewed Back     alignment and domain information
>PRK10218 GTP-binding protein; Provisional Back     alignment and domain information
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) Back     alignment and domain information
>PRK12740 elongation factor G; Reviewed Back     alignment and domain information
>PRK14845 translation initiation factor IF-2; Provisional Back     alignment and domain information
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A Back     alignment and domain information
>PRK07560 elongation factor EF-2; Reviewed Back     alignment and domain information
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional Back     alignment and domain information
>TIGR00487 IF-2 translation initiation factor IF-2 Back     alignment and domain information
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma Back     alignment and domain information
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated Back     alignment and domain information
>PRK05306 infB translation initiation factor IF-2; Validated Back     alignment and domain information
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea Back     alignment and domain information
>TIGR02034 CysN sulfate adenylyltransferase, large subunit Back     alignment and domain information
>COG5258 GTPBP1 GTPase [General function prediction only] Back     alignment and domain information
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>CHL00189 infB translation initiation factor 2; Provisional Back     alignment and domain information
>TIGR00484 EF-G translation elongation factor EF-G Back     alignment and domain information
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional Back     alignment and domain information
>PRK12739 elongation factor G; Reviewed Back     alignment and domain information
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional Back     alignment and domain information
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00007 elongation factor G; Reviewed Back     alignment and domain information
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
1g7s_A 594 X-Ray Structure Of Translation Initiation Factor If 2e-13
1g7r_A 594 X-Ray Structure Of Translation Initiation Factor If 2e-12
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 11  CQTFLKKRLMFKNELQA--TVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVT 68
            Q +L+++L  + +  A  T+LEVK   GLG TID ++ +G L + DT+ +  +   I T
Sbjct: 216 AQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVIST 275
Query: 69  QIRSLLMPQPMQELR-VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEI 125
           +IRSLL P+P++E+R  +  + +  ++    G+KI A  ++  +AG  LRV  D +++
Sbjct: 276 RIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKV 333
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
1g7s_A 594 Translation initiation factor IF2/EIF5B; translati 3e-41
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 Back     alignment and structure
 Score =  143 bits (363), Expect = 3e-41
 Identities = 41/141 (29%), Positives = 77/141 (54%), Gaps = 3/141 (2%)

Query: 8   IQYCQTFLKKRLMFKNELQA--TVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGP 65
           +   Q +L+++L  + +  A  T+LEVK   GLG TID ++ +G L + DT+ +  +   
Sbjct: 213 MGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV 272

Query: 66  IVTQIRSLLMPQPMQELR-VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDE 124
           I T+IRSLL P+P++E+R  +  + +  ++    G+KI A  ++  +AG  LRV  D ++
Sbjct: 273 ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEK 332

Query: 125 IDDLCDEVARELKSALSTIKL 145
           + +       ++K       +
Sbjct: 333 VREEILSEIEDIKIDTDEAGV 353

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
1g7s_A 594 Translation initiation factor IF2/EIF5B; translati 99.84
1zo1_I 501 IF2, translation initiation factor 2; E. coli, rib 99.2
3izy_P 537 Translation initiation factor IF-2, mitochondrial; 98.98
2c78_A405 Elongation factor TU-A; hydrolase, GTPase, transla 97.69
1d2e_A397 Elongation factor TU (EF-TU); G-protein, beta-barr 97.65
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 97.08
2dy1_A 665 Elongation factor G; translocation, GTP complex, s 97.03
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 96.98
2elf_A370 Protein translation elongation factor 1A; tRNA, py 96.66
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 96.63
1dar_A 691 EF-G, elongation factor G; ribosomal translocase, 96.54
1s0u_A408 EIF-2-gamma, translation initiation factor 2 gamma 96.43
3sjy_A403 Translation initiation factor 2 subunit gamma; zin 96.2
1kk1_A410 EIF2gamma; initiation of translation; HET: GNP; 1. 96.09
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 96.07
2ywe_A 600 GTP-binding protein LEPA; G domain, beta-barrel, f 95.93
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 95.75
1f60_A 458 Elongation factor EEF1A; protein-protein complex, 95.68
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 95.19
3j2k_7439 ERF3, eukaryotic polypeptide chain release factor 95.14
2rdo_7 704 EF-G, elongation factor G; elongation factor G, EF 94.82
1zun_B434 Sulfate adenylate transferase, subunit 1/adenylyls 94.58
3cb4_D 599 GTP-binding protein LEPA; GTPase, OB-fold, membran 94.43
1wb1_A 482 Translation elongation factor SELB; selenocysteine 94.42
1g7s_A594 Translation initiation factor IF2/EIF5B; translati 94.25
3e1y_E204 Eukaryotic peptide chain release factor GTP-bindi 93.88
1zo1_I501 IF2, translation initiation factor 2; E. coli, rib 92.42
4he6_A89 Peptidase family U32; ultra-tight crystal packing, 91.76
1xe1_A116 Hypothetical protein PF0907; structural genomics, 90.65
2xex_A 693 Elongation factor G; GTPase, translation, biosynth 89.67
2h5e_A 529 Peptide chain release factor RF-3; beta barrel, tr 89.09
3tr5_A 528 RF-3, peptide chain release factor 3; protein synt 88.5
1d1n_A99 Initiation factor 2; beta-barrel, gene regulation; 87.04
3izy_P537 Translation initiation factor IF-2, mitochondrial; 81.2
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Back     alignment and structure
Probab=99.84  E-value=1.3e-20  Score=169.26  Aligned_cols=131  Identities=31%  Similarity=0.584  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHhhcCcc--CcceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhc
Q psy9896           6 REIQYCQTFLKKRLMFK--NELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR   83 (145)
Q Consensus         6 ~l~gl~Q~~m~~~L~~~--~~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R   83 (145)
                      .|..+++.++..++.++  ..+.|+|+|++.++|.|+++++.+++|+|++||+|++++.+|+..+|||+|++|+|++|||
T Consensus       211 ~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr  290 (594)
T 1g7s_A          211 MLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMR  290 (594)
T ss_dssp             HHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC---
T ss_pred             HHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhh
Confidence            45667788887677663  3489999999999999999999999999999999999999999999999999999999999


Q ss_pred             -ccccceeeceeecCcCeEEecCCCCcccCCCeEEEecCcccHHHHHHHHHHHHHHH
Q psy9896          84 -VKNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRVAKDQDEIDDLCDEVARELKSA  139 (145)
Q Consensus        84 -~k~~~~~~~~v~aa~gVkI~a~~Le~~~AGs~l~vv~~~~e~e~~~~ev~~e~~~~  139 (145)
                       ..++|.+++++.||+|+++++++|+++.+|++|.+++++   +++++++++|++++
T Consensus       291 ~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~---~~~~~~~~~~~~~~  344 (594)
T 1g7s_A          291 ESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDP---EKVREEILSEIEDI  344 (594)
T ss_dssp             -CCCSEEECSEEESSEEEEEECSSCTTBCTTCEEEECSSH---HHHHHHHHHHHHTT
T ss_pred             hccCCceEccEEcCCCCcEEEEcccCCCCCCCEEEecCCH---HHHHHHHHHHHHhc
Confidence             678999999999999999999999999999999999866   45677777777643
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Back     alignment and structure
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Back     alignment and structure
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Back     alignment and structure
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Back     alignment and structure
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Back     alignment and structure
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Back     alignment and structure
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Back     alignment and structure
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Back     alignment and structure
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Back     alignment and structure
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Back     alignment and structure
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} Back     alignment and structure
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Back     alignment and structure
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Back     alignment and structure
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Back     alignment and structure
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Back     alignment and structure
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Back     alignment and structure
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A Back     alignment and structure
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 Back     alignment and structure
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Back     alignment and structure
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Back     alignment and structure
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Back     alignment and structure
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 Back     alignment and structure
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 145
d1g7sa1101 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, 6e-29
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 101 Back     information, alignment and structure

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor IF2/eIF5b, domains 2 and 4
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 99.8 bits (249), Expect = 6e-29
 Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 26  QATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR-V 84
           + T+LEVK   GLG TID ++ +G L + DT+ +  +   I T+IRSLL P+P++E+R  
Sbjct: 6   RGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRES 65

Query: 85  KNAYVEYKKIKGTQGVKIAAKDLEKTIAGLNLRV 118
           +  + +  ++    G+KI A  ++  +AG  LRV
Sbjct: 66  RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRV 99

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
d1g7sa1101 Initiation factor IF2/eIF5b, domains 2 and 4 {Arch 100.0
d2bv3a1121 Elongation factor G (EF-G), domain II {Thermus the 96.77
d1f60a194 Elongation factor eEF-1alpha, domain 2 {Baker's ye 96.71
d1xe1a_91 Hypothetical protein PF0907 {Pyrococcus furiosus [ 96.67
d1efca192 Elongation factor Tu (EF-Tu), domain 2 {Escherichi 96.57
d1d2ea198 Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t 96.56
d2dy1a1103 Elongation factor G (EF-G), domain II {Thermus the 96.35
d1jnya195 Elongation factor eEF-1alpha, domain 2 {Archaeon S 96.28
d2c78a1100 Elongation factor Tu (EF-Tu), domain 2 {Thermus th 96.15
d1g7sa2128 Initiation factor IF2/eIF5b, domains 2 and 4 {Arch 95.87
d1r5ba195 Eukaryotic peptide chain release factor ERF2, post 95.47
d1wb1a192 Elongation factor SelB, domains 2 and 4 {Methanoco 94.67
d1zunb192 Sulfate adenylate transferase subunit cysN/C, EF-T 94.26
d1n0ua1138 Elongation factor 2 (eEF-2), domain II {Baker's ye 94.21
d1kk1a1121 Initiation factor eIF2 gamma subunit, domain II {A 93.81
d1s0ua1118 Initiation factor eIF2 gamma subunit, domain II {A 92.53
d2qn6a1114 Initiation factor eIF2 gamma subunit, domain II {S 92.15
d1d1na_99 Initiation factor IF2/eIF5b, domains 2 and 4 {Baci 88.1
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor IF2/eIF5b, domains 2 and 4
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=4.5e-39  Score=234.24  Aligned_cols=97  Identities=36%  Similarity=0.641  Sum_probs=91.7

Q ss_pred             cceEEEEEEeeeCCcceEEEEEEEccEEcCCCEEEEccCCCceeeeeeeccCCCcchhhc-ccccceeeceeecCcCeEE
Q psy9896          24 ELQATVLEVKAIPGLGTTIDTILVNGTLYEGDTVVLAGTDGPIVTQIRSLLMPQPMQELR-VKNAYVEYKKIKGTQGVKI  102 (145)
Q Consensus        24 ~~~gtVLEvK~~kGlG~tidvIl~~G~L~~GD~Iv~~~~~Gpi~tkIRaLl~p~Pl~E~R-~k~~~~~~~~v~aa~gVkI  102 (145)
                      .++|+|||+|.++|+|+++|+|+||||||+||+|++|+.+|||.|+||+||+|+||+||| .+++|++++++.||+||||
T Consensus         4 ~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gVkI   83 (101)
T d1g7sa1           4 PARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKI   83 (101)
T ss_dssp             BCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEE
T ss_pred             CcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCceEE
Confidence            489999999999999999999999999999999999999999999999999999999999 7889999999999999999


Q ss_pred             ecCCCCcccCCCeEEEec
Q psy9896         103 AAKDLEKTIAGLNLRVAK  120 (145)
Q Consensus       103 ~a~~Le~~~AGs~l~vv~  120 (145)
                      +|+|||+++||++|+|++
T Consensus        84 ~a~gLe~v~aG~~~~VV~  101 (101)
T d1g7sa1          84 VAPGIDDVMAGSPLRVVT  101 (101)
T ss_dssp             ECSSCTTBCTTCEEEECS
T ss_pred             EcCCCCcCCCCCEEEEeC
Confidence            999999999999999984
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure