Psyllid ID: psy9898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHccc
Coil and Loop (DISEMBL)
MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGAsfandkenycLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Flexible Loop (DISEMBL)
msaaertqaEVVEflvhksgvtiEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Low Complexity Region (SEG)
MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Disordered region (IsUnstruct)
*********EVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQK***
Disordered Region (DISOPRED)
*S***RTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLG*
Disordered Region (DISEMBL)
*********EVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Disordered Region (DISPRO)
MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIGRIIMTPIYTTACVILQKLGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q6GPE5	629	Protein fem-1 homolog B O	N/A	N/A	0.707	0.092	0.534	3e-10
Q5ZM55	627	Protein fem-1 homolog B O	yes	N/A	0.951	0.124	0.415	2e-09
Q9Z2G0	627	Protein fem-1 homolog B O	yes	N/A	0.951	0.124	0.393	1e-08
P0C6P7	627	Protein fem-1 homolog B O	yes	N/A	0.951	0.124	0.393	1e-08
Q9UK73	627	Protein fem-1 homolog B O	yes	N/A	0.951	0.124	0.393	1e-08
A1ZBY1	650	Protein fem-1 homolog B O	yes	N/A	0.731	0.092	0.475	2e-08
Q96JP0	617	Protein fem-1 homolog C O	no	N/A	0.853	0.113	0.373	9e-06
Q8CEF1	617	Protein fem-1 homolog C O	no	N/A	0.853	0.113	0.373	9e-06
A7MB89	617	Protein fem-1 homolog C O	no	N/A	0.853	0.113	0.373	9e-06
Q6P9Z4	617	Protein fem-1 homolog A O	no	N/A	0.707	0.094	0.4	1e-05

>sp|Q6GPE5|FEM1B_XENLA Protein fem-1 homolog B OS=Xenopus laevis GN=fem1b PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 41/58 (70%)

Query: 3   AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           AAE  +A+VVE L+  S    + +I+ALELLGASFAND+ENY +T  ++YLY  M  R
Sbjct: 228 AAESCKADVVELLLAHSDCDAKSRIEALELLGASFANDRENYNITKTYQYLYLAMLER 285

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis.
Xenopus laevis (taxid: 8355)

>sp|Q5ZM55|FEM1B_CHICK Protein fem-1 homolog B OS=Gallus gallus GN=FEM1B PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 3   AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
           AAE  +A+VVE L+  +G     +I+ALELLGASFAND+ENY +   + YLY  M  R  
Sbjct: 226 AAESCKADVVELLLAHAGCNRRSRIEALELLGASFANDRENYDIMKTYHYLYLAMLERYR 285

Query: 61  -----IGRIIMTPIYT----TACVILQKL 80
                I + ++ PI      T C   Q+L
Sbjct: 286 DSENIIEKEVLPPIEAYGNRTECRTPQEL 314

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis.

Gallus gallus (taxid: 9031)

>sp|Q9Z2G0|FEM1B_MOUSE Protein fem-1 homolog B OS=Mus musculus GN=Fem1b PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 3   AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
           AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M  R  
Sbjct: 226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAMLERFQ 285

Query: 61  -----IGRIIMTPIYT----TACVILQKL 80
                + + ++ PI+     T C   Q+L
Sbjct: 286 DGDNILEKEVLPPIHAYGNRTECRNPQEL 314

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet. Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Mus musculus (taxid: 10090)

>sp|P0C6P7|FEM1B_RAT Protein fem-1 homolog B OS=Rattus norvegicus GN=Fem1b PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 3   AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
           AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M  R  
Sbjct: 226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAMLERFQ 285

Query: 61  -----IGRIIMTPIYT----TACVILQKL 80
                + + ++ PI+     T C   Q+L
Sbjct: 286 DGDNILEKEVLPPIHAYGNRTECRNPQEL 314

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet (By similarity). Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Rattus norvegicus (taxid: 10116)

>sp|Q9UK73|FEM1B_HUMAN Protein fem-1 homolog B OS=Homo sapiens GN=FEM1B PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 3   AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR-- 60
           AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M  R  
Sbjct: 226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIIKTYHYLYLAMLERFQ 285

Query: 61  -----IGRIIMTPIYT----TACVILQKL 80
                + + ++ PI+     T C   Q+L
Sbjct: 286 DGDNILEKEVLPPIHAYGNRTECRNPQEL 314

Component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. Involved in apoptosis by acting as a death receptor-associated protein that mediates apoptosis. Also involved in glucose homeostasis in pancreatic islet. Functions as an adapter/mediator in replication stress-induced signaling that leads to the activation of CHEK1.

Homo sapiens (taxid: 9606)

>sp|A1ZBY1|FEM1B_DROME Protein fem-1 homolog B OS=Drosophila melanogaster GN=Fem-1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 1   MSAAERTQAEVVE-FLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59
           + AAER   +V+E F+     +++EE+I ALELLGA++ANDK  Y +  A+ YL + MQL
Sbjct: 227 LQAAERLHEDVLEAFIERPELMSLEEQITALELLGATYANDKIKYDVNKAYGYLLRAMQL 286

Query: 60  R 60
           R
Sbjct: 287 R 287

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q96JP0|FEM1C_HUMAN Protein fem-1 homolog C OS=Homo sapiens GN=FEM1C PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           +SA+      +V+FL H +  +  E+I+ALELLGA+F + K +  L  A KY  K M +R
Sbjct: 219 LSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRD--LLGALKYWKKAMNMR 276

Query: 61  IG---RIIMTPIYTT 72
                 II  P+  T
Sbjct: 277 YSDRTNIISKPVPQT 291

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Homo sapiens (taxid: 9606)

>sp|Q8CEF1|FEM1C_MOUSE Protein fem-1 homolog C OS=Mus musculus GN=Fem1c PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           +SA+      +V+FL H +  +  E+I+ALELLGA+F + K +  L  A KY  K M +R
Sbjct: 219 LSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRD--LLGALKYWKKAMNMR 276

Query: 61  IG---RIIMTPIYTT 72
                 II  P+  T
Sbjct: 277 YSDRTNIISKPVPQT 291

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Mus musculus (taxid: 10090)

>sp|A7MB89|FEM1C_BOVIN Protein fem-1 homolog C OS=Bos taurus GN=FEM1C PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           +SA+      +V+FL H +  +  E+I+ALELLGA+F + K +  L  A KY  K M +R
Sbjct: 219 LSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRD--LLGALKYWKKAMNMR 276

Query: 61  IG---RIIMTPIYTT 72
                 II  P+  T
Sbjct: 277 YSDRTNIISKPVPQT 291

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Bos taurus (taxid: 9913)

>sp|Q6P9Z4|FEM1A_DANRE Protein fem-1 homolog A OS=Danio rerio GN=fem1a PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++A+      +VEFLVH+   + E++I ALELLGA+F + K +  L  A +Y  + M+LR
Sbjct: 219 LAASVTGHTNIVEFLVHQPRASREQRIHALELLGATFVDKKRD--LLGAMRYWRRAMELR 276

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
307178909	653	Protein fem-1-like protein B [Camponotus	0.731	0.091	0.716	5e-17
375493328	642	fem-1 homolog B-like protein [Locusta mi	0.731	0.093	0.633	2e-15
383858022	655	PREDICTED: protein fem-1 homolog B-like	0.731	0.091	0.65	5e-15
332030425	643	Protein fem-1-like protein B [Acromyrmex	0.731	0.093	0.666	8e-15
322802134	114	hypothetical protein SINV_13282 [Solenop	0.731	0.526	0.65	1e-14
307211423	653	Protein fem-1-like protein B [Harpegnath	0.902	0.113	0.524	5e-14
91087297	643	PREDICTED: similar to fem-1 homolog b [T	0.829	0.105	0.52	8e-14
270009534	644	hypothetical protein TcasGA2_TC008808 [T	0.829	0.105	0.52	8e-14
350401891	655	PREDICTED: protein fem-1 homolog B-like	0.731	0.091	0.633	1e-13
340718464	655	PREDICTED: protein fem-1 homolog B-like	0.731	0.091	0.633	1e-13

>gi|307178909|gb|EFN67437.1| Protein fem-1-like protein B [Camponotus floridanus]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+AEVVE+LV +  VT EE IDA ELLGAS+ANDK+NYCLT A+KYLYK M+LR
Sbjct: 236 ITAAERTRAEVVEYLVQREEVTKEEIIDAYELLGASYANDKDNYCLTKAYKYLYKAMELR 295

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|375493328|dbj|BAL61212.1| fem-1 homolog B-like protein [Locusta migratoria manilensis]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 53/60 (88%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+A+VVE+L+ +  V+ +EKIDALELLGASFANDK+NYCL  A+ YL++TM++R
Sbjct: 229 IAAAERTRADVVEYLITRPEVSHQEKIDALELLGASFANDKDNYCLQRAYYYLHRTMEMR 288

Source: Locusta migratoria manilensis

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858022|ref|XP_003704502.1| PREDICTED: protein fem-1 homolog B-like [Megachile rotundata]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 52/60 (86%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+AEVVE+L+  + VT EE I+A ELLGAS+ANDK +YCLT+A+KYL+K M+LR
Sbjct: 238 IAAAERTKAEVVEYLIKHANVTKEETIEAYELLGASYANDKSSYCLTTAYKYLWKGMELR 297

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030425|gb|EGI70113.1| Protein fem-1-like protein B [Acromyrmex echinatior]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+ EVVE+LV +  VT EEKIDA ELLGAS+ANDK+NY L  A+ YL+K MQLR
Sbjct: 227 ITAAERTREEVVEYLVKRPEVTKEEKIDAYELLGASYANDKDNYSLNMAYTYLWKAMQLR 286

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802134|gb|EFZ22591.1| hypothetical protein SINV_13282 [Solenopsis invicta]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 50/60 (83%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT++EVVE+LV  + V  +EKIDA ELLGAS+ANDK+NYCLT A+ YL K M+LR
Sbjct: 55  ITAAERTRSEVVEYLVQNTEVIKKEKIDAYELLGASYANDKDNYCLTRAYTYLRKAMELR 114

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211423|gb|EFN87550.1| Protein fem-1-like protein B [Harpegnathos saltator]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 8/82 (9%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+A+VVE LV +  VT EE IDA ELLGAS+ANDK++YCL  A+KYL+K M+LR
Sbjct: 236 IAAAERTRAQVVECLVKREEVTKEEIIDAYELLGASYANDKDSYCLIKAYKYLHKAMELR 295

Query: 61  IGRIIMTPIYTTACVILQKLGV 82
                      T  ++ +KLG+
Sbjct: 296 YS--------DTNNIVYKKLGL 309

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087297|ref|XP_975561.1| PREDICTED: similar to fem-1 homolog b [Tribolium castaneum]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 58/75 (77%), Gaps = 7/75 (9%)

Query: 2   SAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR- 60
           +AAERT+A+VVE+LV +  ++ EE+I+ALELLGAS+ANDKENY +  A+KYL+++M LR 
Sbjct: 230 AAAERTRADVVEYLVERPEISKEEQIEALELLGASYANDKENYDIVMAYKYLHRSMMLRY 289

Query: 61  ------IGRIIMTPI 69
                 + + ++TPI
Sbjct: 290 SDPDSPVKKKLITPI 304

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009534|gb|EFA05982.1| hypothetical protein TcasGA2_TC008808 [Tribolium castaneum]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 58/75 (77%), Gaps = 7/75 (9%)

Query: 2   SAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR- 60
           +AAERT+A+VVE+LV +  ++ EE+I+ALELLGAS+ANDKENY +  A+KYL+++M LR 
Sbjct: 230 AAAERTRADVVEYLVERPEISKEEQIEALELLGASYANDKENYDIVMAYKYLHRSMMLRY 289

Query: 61  ------IGRIIMTPI 69
                 + + ++TPI
Sbjct: 290 SDPDSPVKKKLITPI 304

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401891|ref|XP_003486298.1| PREDICTED: protein fem-1 homolog B-like [Bombus impatiens]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+AEVVE+L+    VT EE I+A ELLGAS+AND+ NYCLT A+KYL+K M+ R
Sbjct: 238 IAAAERTRAEVVEYLIKYVKVTREEAIEAYELLGASYANDERNYCLTKAYKYLWKAMKHR 297

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718464|ref|XP_003397687.1| PREDICTED: protein fem-1 homolog B-like [Bombus terrestris]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 1   MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR 60
           ++AAERT+AEVVE+L+    VT EE I+A ELLGAS+AND+ NYCLT A+KYL+K M+ R
Sbjct: 238 IAAAERTRAEVVEYLIKYVKVTREEAIEAYELLGASYANDERNYCLTKAYKYLWKAMKHR 297

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
UNIPROTKB|Q6GPE5	629	fem1b "Protein fem-1 homolog B	0.670	0.087	0.545	2e-09
UNIPROTKB|F1NZR5	535	F1NZR5 "Uncharacterized protei	0.670	0.102	0.527	6.8e-09
UNIPROTKB|Q5ZM55	627	FEM1B "Protein fem-1 homolog B	0.670	0.087	0.527	8.6e-09
UNIPROTKB|F1N162	627	FEM1B "Uncharacterized protein	0.670	0.087	0.509	4.9e-08
UNIPROTKB|E2REP8	627	FEM1B "Uncharacterized protein	0.670	0.087	0.509	4.9e-08
UNIPROTKB|Q9UK73	627	FEM1B "Protein fem-1 homolog B	0.670	0.087	0.509	4.9e-08
UNIPROTKB|I3L6T4	627	FEM1B "Uncharacterized protein	0.670	0.087	0.509	4.9e-08
MGI|MGI:1335087	627	Fem1b "feminization 1 homolog	0.670	0.087	0.509	4.9e-08
RGD|1304569	627	Fem1b "fem-1 homolog b (C. ele	0.670	0.087	0.509	4.9e-08
FB|FBgn0034542	650	Fem-1 "Fem-1" [Drosophila mela	0.731	0.092	0.475	6.5e-08

UNIPROTKB|Q6GPE5 fem1b "Protein fem-1 homolog B" [Xenopus laevis (taxid:8355)]

 Score = 148 (57.2 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  S    + +I+ALELLGASFAND+ENY +T  ++YLY  M
Sbjct:   228 AAESCKADVVELLLAHSDCDAKSRIEALELLGASFANDRENYNITKTYQYLYLAM 282

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISS

UNIPROTKB|F1NZR5 F1NZR5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +G     +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   160 AAESCKADVVELLLAHAGCNRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 214

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

UNIPROTKB|Q5ZM55 FEM1B "Protein fem-1 homolog B" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +G     +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLAHAGCNRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 280

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISS

UNIPROTKB|F1N162 FEM1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 280

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2REP8 FEM1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 280

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9UK73 FEM1B "Protein fem-1 homolog B" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIIKTYHYLYLAM 280

GO:0006915 "apoptotic process" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0005123 "death receptor binding" evidence=IMP;NAS

GO:0006917 "induction of apoptosis" evidence=NAS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:2000001 "regulation of DNA damage checkpoint" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3L6T4 FEM1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 280

GO:2000001 "regulation of DNA damage checkpoint" evidence=IEA

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005123 "death receptor binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:1335087 Fem1b "feminization 1 homolog b (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 280

GO:0002070 "epithelial cell maturation" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005123 "death receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISO

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IMP

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IMP

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISO

RGD|1304569 Fem1b "fem-1 homolog b (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     3 AAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTM 57
             AAE  +A+VVE L+  +      +I+ALELLGASFAND+ENY +   + YLY  M
Sbjct:   226 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIMKTYHYLYLAM 280

GO:0002070 "epithelial cell maturation" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005123 "death receptor binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0060442 "branching involved in prostate gland morphogenesis" evidence=IEA;ISO

GO:0060743 "epithelial cell maturation involved in prostate gland development" evidence=IEA;ISO

GO:2000001 "regulation of DNA damage checkpoint" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0034542 Fem-1 "Fem-1" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 29/61 (47%), Positives = 42/61 (68%)

Query:     1 MSAAERTQAEVVE-FLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL 59
             + AAER   +V+E F+     +++EE+I ALELLGA++ANDK  Y +  A+ YL + MQL
Sbjct:   227 LQAAERLHEDVLEAFIERPELMSLEEQITALELLGATYANDKIKYDVNKAYGYLLRAMQL 286

Query:    60 R 60
             R
Sbjct:   287 R 287

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG0508|consensus	615		99.78
PF13606	30	Ank_3: Ankyrin repeat	91.04
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	88.34
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	83.23
KOG0514|consensus	452		83.11
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.76

>KOG0508|consensus

Probab=99.78  E-value=1.7e-19  Score=148.12  Aligned_cols=70  Identities=31%  Similarity=0.428  Sum_probs=65.0

Q ss_pred             ChhhhhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC--CCCCCCcccch
Q psy9898           1 MSAAERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG--RIIMTPIYTTA   73 (82)
Q Consensus         1 ~~Aa~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~--~~i~K~~~~~~   73 (82)
                      +.|+++||.+|||+|++ ..+|++.||+|||||||||+|||  +|+.+|++||++||++|++  ++++++.+++|
T Consensus       220 ~~Aa~tG~~~iVe~L~~-~~~sr~~riealEllGat~~dkk--~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p  291 (615)
T KOG0508|consen  220 LLAAVTGHTDIVERLLQ-CETSRESRIEALELLGATYVDKK--RDLLGALKYWRRAMEERESDGESILEKEPLEP  291 (615)
T ss_pred             HHHhhhcchHHHHHHhc-CCcchhhHHHHHHHhcccccchh--HHHHHHHHHHHHHHHhhhhccccccccCCCCc
Confidence            46999999999999998 45899999999999999999999  9999999999999999999  78888877765

>PF13606 Ank_3: Ankyrin repeat

Probab=91.04  E-value=0.17  Score=26.38  Aligned_cols=18  Identities=28%  Similarity=0.475  Sum_probs=16.1

Q ss_pred             hhhhhhHHHHHHHHhhcc
Q psy9898           2 SAAERTQAEVVEFLVHKS   19 (82)
Q Consensus         2 ~Aa~~g~~~Ive~Li~~~   19 (82)
                      .||..|+.+||++|+++.
T Consensus         8 ~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    8 LAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             HHHHhCCHHHHHHHHHcC
Confidence            589999999999999873

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.82  E-value=0.45  Score=23.93  Aligned_cols=30  Identities=23%  Similarity=0.342  Sum_probs=25.3

Q ss_pred             HHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898          28 DALELLGASFANDKENYCLTSAFKYLYKTMQLR   60 (82)
Q Consensus        28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR   60 (82)
                      +++-.+|-+|....   |...|+.+|++|+++.
T Consensus         2 ~~~~~lg~~y~~~~---~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLG---DYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTT---SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC
Confidence            46778888888766   8999999999999875

...

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=88.34  E-value=0.38  Score=24.81  Aligned_cols=18  Identities=28%  Similarity=0.547  Sum_probs=16.1

Q ss_pred             hhhhhhHHHHHHHHhhcc
Q psy9898           2 SAAERTQAEVVEFLVHKS   19 (82)
Q Consensus         2 ~Aa~~g~~~Ive~Li~~~   19 (82)
                      .||.+|+.+||++|+++-
T Consensus         8 ~A~~~~~~~~v~~Ll~~g   25 (33)
T PF00023_consen    8 YAAQRGHPDIVKLLLKHG   25 (33)
T ss_dssp             HHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCc
Confidence            589999999999999863

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.92  E-value=0.66  Score=23.75  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             HHHHHHhCcccccccccccHHHHHHHHHHHHHhHhC
Q psy9898          27 IDALELLGASFANDKENYCLTSAFKYLYKTMQLRIG   62 (82)
Q Consensus        27 IdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~~   62 (82)
                      +.++.-||..|.+-.   +...|..++++|+.++-.
T Consensus         2 a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQG---RYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT----HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhh---hcchhhHHHHHHHHHHHH
Confidence            467788888887776   889999999999999763

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.05  E-value=0.9  Score=22.92  Aligned_cols=30  Identities=20%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             HHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898          28 DALELLGASFANDKENYCLTSAFKYLYKTMQLR   60 (82)
Q Consensus        28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR   60 (82)
                      +++=.+|-.|...+   +...|+.+|++|+++.
T Consensus         2 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLG---DYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhC---CchHHHHHHHHHHHHC
Confidence            45556777777666   8899999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.78  E-value=0.97  Score=23.86  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=23.1

Q ss_pred             HHHHhCcccccccccccHHHHHHHHHHHHHhHh
Q psy9898          29 ALELLGASFANDKENYCLTSAFKYLYKTMQLRI   61 (82)
Q Consensus        29 ALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR~   61 (82)
                      ||-.||-.|....   |..+|+.|+++|+.++.
T Consensus         1 al~~Lg~~~~~~g---~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQG---DYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC---CHHHHHHHHHHHHHhcc
Confidence            4566777776655   88999999999998875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=83.23  E-value=3.3  Score=24.09  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=38.3

Q ss_pred             hhhhHHHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898           4 AERTQAEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR   60 (82)
Q Consensus         4 a~~g~~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR   60 (82)
                      |+.-....++. .+..+-+..+.+.++-.||-.|....   |...|++|..+|+.++
T Consensus        24 A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   24 ALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLG---DYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhh
Confidence            34444555555 33333345567899999999987776   8899999999999986

...

>KOG0514|consensus

Probab=83.11  E-value=0.81  Score=37.89  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             ChhhhhhHHHHHHHHhhccCC
Q psy9898           1 MSAAERTQAEVVEFLVHKSGV   21 (82)
Q Consensus         1 ~~Aa~~g~~~Ive~Li~~~~~   21 (82)
                      ||||+-||.+||..|.++|.|
T Consensus       378 MCA~EHGhkEivklLLA~p~c  398 (452)
T KOG0514|consen  378 MCAAEHGHKEIVKLLLAVPSC  398 (452)
T ss_pred             hhhhhhChHHHHHHHhccCcc
Confidence            799999999999999999987

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.76  E-value=2  Score=21.18  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             HHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898          28 DALELLGASFANDKENYCLTSAFKYLYKTMQL   59 (82)
Q Consensus        28 dALELLGATf~dkk~~~D~~~A~~~Wr~AM~l   59 (82)
                      +++-.+|-.|...+   +...|+++|++|+.+
T Consensus         2 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLG---NYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence            45666777777666   889999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	89.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	87.73

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.27  Score=29.58  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHh
Q psy9898          22 TIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQL   59 (82)
Q Consensus        22 s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~l   59 (82)
                      +...+++++-.||-+|..-.   |...|++||++|+.+
T Consensus        67 ~~~~~~~~~~~Lg~~y~~~g---~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          67 SKEEQRDYVFYLAVGNYRLK---EYEKALKYVRGLLQT  101 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHh
Confidence            46778899999999998766   889999999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.3  Score=27.65  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=35.4

Q ss_pred             HHHHHHHhhccCCCHHHHHHHHHHhCcccccccccccHHHHHHHHHHHHHhH
Q psy9898           9 AEVVEFLVHKSGVTIEEKIDALELLGASFANDKENYCLTSAFKYLYKTMQLR   60 (82)
Q Consensus         9 ~~Ive~Li~~~~~s~~~rIdALELLGATf~dkk~~~D~~~A~~~Wr~AM~lR   60 (82)
                      .+.++..-..+ .+...+.++|+-||-+|..-.   +...|+.++++|+.+.
T Consensus        29 ~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g---~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          29 EQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcC---ChHHHHHHHHHHHHhC
Confidence            33344443333 345577899999999997766   8999999999999874