Psyllid ID: psy9901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MMVRTRTPLEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPVSNLI
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccccccEEEEEcccccccccEEEEEEEEEEccccEEEEccccccEEEEEEEEEEEcccccccccEEEEEEcccccccccccccccEEEccccEEEEEEEEEccccEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEccccccEEEEEEEEEccccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccccccEEEccccccEEEEEEEcHHccccEEEEEEEEEccccccccccEEEEccccccccEEEEEcccEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccEEEEEEEcccccccEEEEEEEcccccccccccEEEEEEEEccccccccEEEHccccEEEEEEEEEccccccEccEEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEcccccEEEEEccccccccccEEEEEEEccccccHHcccccccccccccccccccccccccccEEEEEEccEccccccccEEEEEcccccccEEEEEEEEcccHHHcccccEccEEEEEEEcccccEEEEEEEEcccccccccccEEcccEEEccccccEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEEccccccccccEEcccccEEEcccccHHHHEEEEEEEcccccccHHHHcccccHHHHHHccccccccccccccHccc
Coil and Loop (DISEMBL)
mmvrtrtpleyRAVHCDlirlnntdhivhtsdisisdknivgtqifgyenpcktchpssklknskeVQGYVVkknnnlnrkdewlllgkrdpltpqmfypvEVNVTIHKGDVMAARCVMKNyrnhetyvgstgqdeMCNFYLMYWVensspletkycfsegppnyywgmgdnlnniphpgpiIYAWardapslilpegvgfkvggdTAIQYLVLQVHYAHvegfrdghtdssgvflqytrrpltkEAGVLLLgtggkipalsvenmetscimmedkeihpfayrthTHALGKEVQGYvvkknnnlnrkdewlllgkrdpltpqmfypvEVNVTIHKGQDEMCNFYLMYWVensspletkycfsegppnyywgmgdnlnniphpgpvsnli
Flexible Loop (DISEMBL)
mmvrtrtpleyrAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTchpssklknskevqgyvvkknnnlnrkdewlLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHetyvgstgqDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLgtggkipalsVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKknnnlnrkdewlLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLnniphpgpvsnli
Low Complexity Region (SEG)
MMVRTRTPLEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPVSNLI
Disordered region (IsUnstruct)
********LEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCH**********VQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNL*************
Disordered Region (DISOPRED)
*****RTPLEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP*******
Disordered Region (DISEMBL)
********LEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPVSNLI
Disordered Region (DISPRO)
*MVRTRTPLEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMVRTRTPLEYRAVHCDLIRLNNTDHIVHTSDISISDKNIVGTQIFGYENPCKTCHPSSKLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNYRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPVSNLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
O01404	365	Peptidylglycine alpha-hyd	yes	N/A	0.510	0.545	0.542	7e-63
Q95XM2	324	Probable peptidylglycine	yes	N/A	0.558	0.672	0.403	3e-46
P97467	979	Peptidyl-glycine alpha-am	yes	N/A	0.494	0.197	0.390	2e-34
P14925	976	Peptidyl-glycine alpha-am	yes	N/A	0.494	0.197	0.403	2e-34
P10731	972	Peptidyl-glycine alpha-am	yes	N/A	0.494	0.198	0.390	3e-34
P08478	935	Peptidyl-glycine alpha-am	N/A	N/A	0.494	0.206	0.359	2e-33
P12890	875	Peptidyl-glycine alpha-am	N/A	N/A	0.489	0.218	0.365	8e-33
P19021	973	Peptidyl-glycine alpha-am	no	N/A	0.494	0.198	0.390	9e-33
P83388	663	Probable peptidyl-glycine	no	N/A	0.405	0.238	0.352	1e-23
P09172	617	Dopamine beta-hydroxylase	no	N/A	0.4	0.252	0.292	1e-09

>sp|O01404|PHM_DROME Peptidylglycine alpha-hydroxylating monooxygenase OS=Drosophila melanogaster GN=Phm PE=1 SV=2

 Score =  241 bits (615), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 122/225 (54%), Positives = 151/225 (67%), Gaps = 26/225 (11%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWARDA  L LPEGVGFKVG ++ I+YLVLQVHYAH++ F+DG TD SGVFL YT  
Sbjct: 137 IVYAWARDAQKLNLPEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEE 196

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           P  K AG LLLGT G+IPA+  E++ET+C + E K +HPFAYR HTH LGK V GY V+ 
Sbjct: 197 PRKKLAGTLLLGTDGQIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVSGYRVRT 256

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFY------------PVEVNVTIHK-----------GQ 338
           N+  + + EWL LGKRDPLTPQMFY             + V  T+              +
Sbjct: 257 NS--DGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQSTRHRTTKIGPTNE 314

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDN-LNNIPH 382
           DEMCNFYLMY+V++   L  K+CFS+G P Y+W   D+ L+NIPH
Sbjct: 315 DEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNPDSGLHNIPH 359

Monooxygenase that catalyzes an essential reaction in C-terminal alpha-amidation of peptides. Produces an unstable peptidyl(2-hydroxyglycine) intermediate. C-terminal amidation of peptides is required for normal developmental transitions and for biosynthesis of secretory peptides throughout the life.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 7EC: .EC: 3

>sp|Q95XM2|PHM_CAEEL Probable peptidylglycine alpha-hydroxylating monooxygenase Y71G12B.4 OS=Caenorhabditis elegans GN=Y71G12B.4 PE=1 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 142/258 (55%), Gaps = 40/258 (15%)

Query: 157 CFSEGPPNYYWGMG------DNLNNIPHPG---PIIYAWARDAPSLILPEGVGFKVGGDT 207
           C   G     W  G      D +   P  G    I+YAWA DAP L LP+ VGF+VGGD+
Sbjct: 73  CEEPGSDELVWDCGEMNKPDDEMPRAPTCGSKPAILYAWALDAPPLELPQDVGFRVGGDS 132

Query: 208 AIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENME 267
            I++LV+QVHY H +       D +G+ + +T  P  K A  +LL TGG +P    E+ E
Sbjct: 133 NIRHLVMQVHYMHSKQ----EPDETGLEITHTEEPQPKLAATMLLVTGGTLPRNKTESFE 188

Query: 268 TSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYP 327
           T+C++ ED  +HPFAYRTHTH  GKEV G++VK++     +D W L+G+RDP   QMF P
Sbjct: 189 TACMIEEDVVMHPFAYRTHTHRHGKEVSGWLVKEDQ--KHEDHWKLIGRRDPQLAQMFVP 246

Query: 328 VEVN-VTIHKG-----------------------QDEMCNFYLMYWVENSSPLETKYCFS 363
           VE   +TI +G                       +DEMCNFY+MYW +    ++   C+S
Sbjct: 247 VEDQAMTIQQGDMVTARCILQNNENRDISMGATEEDEMCNFYIMYWTDGEV-MQDNTCYS 305

Query: 364 EGPPNYYWGMGDNLNNIP 381
            G P+Y W    +LN+IP
Sbjct: 306 PGAPDYKWAREADLNHIP 323

Monooxygenase that catalyzes an essential reaction in C-terminal alpha-amidation of peptides. Produces an unstable peptidyl(2-hydroxyglycine) intermediate. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: 3

>sp|P97467|AMD_MOUSE Peptidyl-glycine alpha-amidating monooxygenase OS=Mus musculus GN=Pam PE=1 SV=2

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 116/228 (50%), Gaps = 35/228 (15%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct: 136 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRV 195

Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 196 PQPLIAGMYLMMSVNTVIPPGEKVVNSDISC-HYKMYPMHVFAYRVHTHHLGKVVSGYRV 254

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG---------------------- 337
                  R  +W L+G++ P  PQ FYPVE  V +  G                      
Sbjct: 255 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVAFGDILAARCVFTGEGRTEATHIGG 307

Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    +    C     P+ +  + +   NIP P
Sbjct: 308 TSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPEEA-NIPIP 354

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P14925|AMD_RAT Peptidyl-glycine alpha-amidating monooxygenase OS=Rattus norvegicus GN=Pam PE=1 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 137 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 196

Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 197 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 255

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 256 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 308

Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 309 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEA-NIPIP 355

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P10731|AMD_BOVIN Peptidyl-glycine alpha-amidating monooxygenase OS=Bos taurus GN=PAM PE=1 SV=2

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 115/228 (50%), Gaps = 35/228 (15%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct: 132 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRL 191

Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 192 PQPLIAGMYLMMSVDTVIPPGGKVVNSDISC-HYKKYPMHVFAYRVHTHHLGKVVSGYRV 250

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG---------------------- 337
                  R  +W L+G++ P  PQ FYPVE  V +  G                      
Sbjct: 251 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVSFGDILAARCVFTGEGRTEVTHIGG 303

Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    +    C     P+ +  +     NIP P
Sbjct: 304 TSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDIFRTIPPEA-NIPIP 350

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P08478|AMDA_XENLA Peptidyl-glycine alpha-amidating monooxygenase A OS=Xenopus laevis GN=pam-a PE=1 SV=3

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 117/228 (51%), Gaps = 35/228 (15%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWA++AP   LPEGVGF+VGG +  +Y VLQVHY +V+ F+D H D +GV ++ T  
Sbjct: 133 IMYAWAKNAPPTKLPEGVGFRVGGKSGSRYFVLQVHYGNVKAFQDKHKDCTGVTVRVTPE 192

Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
              + AG+ L  +   +  P     N + +C +     IHPFAYR HTH LG+ V G+ V
Sbjct: 193 KQPQIAGIYLSMSVDTVIPPGEEAVNSDIAC-LYNRPTIHPFAYRVHTHQLGQVVSGFRV 251

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ--------------------- 338
                  R  +W L+G++ P  PQ FYPVE  V I  G                      
Sbjct: 252 -------RHGKWSLIGRQSPQLPQAFYPVEHPVEISPGDIIATRCLFTGKGRTSATYIGG 304

Query: 339 ---DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY+++ +       C   G P  +  + + + N+P P
Sbjct: 305 TSNDEMCNLYIMYYMDAAHATSYMTCVQTGEPKLFQNIPE-IANVPIP 351

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Xenopus laevis (taxid: 8355)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P12890|AMDB_XENLA Peptidyl-glycine alpha-amidating monooxygenase B OS=Xenopus laevis GN=pam-b PE=2 SV=1

 Score =  141 bits (356), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 39/230 (16%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYT-- 239
           I+YAWA++AP   LPEGVGF+VGG +  +Y VLQVHY  V+ F+D H D +GV ++ T  
Sbjct: 135 IMYAWAKNAPPTKLPEGVGFQVGGKSGSRYFVLQVHYGDVKAFQDKHKDCTGVTVRITPE 194

Query: 240 RRPLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGY 297
           ++PL   AG+ L  +   +  P   V N + +C +     IHPFAYR HTH LG+ V G+
Sbjct: 195 KQPLI--AGIYLSMSLNTVVPPGQEVVNSDIAC-LYNRPTIHPFAYRVHTHQLGQVVSGF 251

Query: 298 VVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG-------------------- 337
            V       R  +W L+G++ P  PQ FYPVE  + I  G                    
Sbjct: 252 RV-------RHGKWTLIGRQSPQLPQAFYPVEHPLEISPGDIIATRCLFTGKGRMSATYI 304

Query: 338 ----QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
               +DEMCN Y+MY+++ +       C   G P  +  + + + N+P P
Sbjct: 305 GGTAKDEMCNLYIMYYMDAAHATSYMTCVQTGNPKLFENIPE-IANVPIP 353

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Xenopus laevis (taxid: 8355)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P19021|AMD_HUMAN Peptidyl-glycine alpha-amidating monooxygenase OS=Homo sapiens GN=PAM PE=1 SV=2

 Score =  141 bits (355), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 116/228 (50%), Gaps = 35/228 (15%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD + D SGV L  TR 
Sbjct: 132 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNNKDCSGVSLHLTRL 191

Query: 242 PLTKEAGV-LLLGTGGKIPA-LSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L++     IPA   V N + SC   ++  +H FAYR HTH LGK V GY V
Sbjct: 192 PQPLIAGMYLMMSVDTVIPAGEKVVNSDISC-HYKNYPMHVFAYRVHTHHLGKVVSGYRV 250

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG---------------------- 337
                  R  +W L+G++ P  PQ FYPV   V +  G                      
Sbjct: 251 -------RNGQWTLIGRQSPQLPQAFYPVGHPVDVSFGDLLAARCVFTGEGRTEATHIGG 303

Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    +    C     P+ +  +     NIP P
Sbjct: 304 TSSDEMCNLYIMYYMEAKHAVSFMTCTQNVAPDMFRTIPPEA-NIPIP 350

Bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P83388|AMDL_CAEEL Probable peptidyl-glycine alpha-amidating monooxygenase T19B4.1 OS=Caenorhabditis elegans GN=T19B4.1 PE=1 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 95/193 (49%), Gaps = 35/193 (18%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDT-AIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTR 240
           I+YAWAR+AP+L+LP+ V F VG +   I+Y VLQVHYA  + F     D SGV +  ++
Sbjct: 106 ILYAWARNAPNLVLPKDVAFSVGHEQDGIKYFVLQVHYA--QPFAGEVHDFSGVTMHISQ 163

Query: 241 RPLTKEAGVLLLGTGGKIP-ALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           +     A V+L  +G  IP  L       +C+      IHPFA+RTHTHA+G+ V  +  
Sbjct: 164 KKPMNLAAVMLFVSGTPIPPQLPAFQNNITCMFESSTPIHPFAFRTHTHAMGRLVSAF-- 221

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ--------------------- 338
                      W  +GKR+P  PQ+F  +   + I  G                      
Sbjct: 222 -----FKHDGHWTKIGKRNPQWPQLFEGIPSKLMIGSGDQMSASCRFDSMDKNRTVNMGA 276

Query: 339 ---DEMCNFYLMY 348
              DEMCNFY+M+
Sbjct: 277 MGVDEMCNFYMMF 289

Probable bifunctional enzyme that catalyzes 2 sequential steps in C-terminal alpha-amidation of peptides. The monooxygenase part produces an unstable peptidyl(2-hydroxyglycine) intermediate that is dismutated to glyoxylate and the corresponding desglycine peptide amide by the lyase part. C-terminal amidation of peptides such as neuropeptides is essential for full biological activity.

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 5

>sp|P09172|DOPO_HUMAN Dopamine beta-hydroxylase OS=Homo sapiens GN=DBH PE=1 SV=3

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 25/181 (13%)

Query: 171 DNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTD 230
           D LN   H   ++ AWA  A +   PE  G   GG  + +YL L+VHY H     +G  D
Sbjct: 290 DRLNYCRH---VLAAWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHY-HNPLVIEGRND 345

Query: 231 SSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIM------------MEDKEI 278
           SSG+ L YT +     AG++ LG     P +++   ET+ I+            +    I
Sbjct: 346 SSGIRLYYTAKLRRFNAGIMELGL-VYTPVMAIPPRETAFILTGYCTDKCTQLALPPSGI 404

Query: 279 HPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVTIHK 336
           H FA + HTH  G++V   +V+         EW ++ + +  +P  Q    ++  V++H 
Sbjct: 405 HIFASQLHTHLTGRKVVTVLVRDGR------EWEIVNQDNHYSPHFQEIRMLKKVVSVHP 458

Query: 337 G 337
           G
Sbjct: 459 G 459

Conversion of dopamine to noradrenaline.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
307197054	313	Peptidylglycine alpha-hydroxylating mono	0.492	0.613	0.614	1e-70
340712968	332	PREDICTED: peptidylglycine alpha-hydroxy	0.494	0.581	0.605	7e-69
158285687	422	AGAP007420-PA [Anopheles gambiae str. PE	0.515	0.476	0.570	8e-67
350409073	332	PREDICTED: peptidylglycine alpha-hydroxy	0.494	0.581	0.591	8e-67
195382551	357	GJ21893 [Drosophila virilis] gi|19414479	0.510	0.557	0.586	1e-66
307185943	300	Peptidylglycine alpha-hydroxylating mono	0.492	0.64	0.587	3e-66
328787622	341	PREDICTED: peptidylglycine alpha-hydroxy	0.494	0.565	0.591	3e-66
383861436	335	PREDICTED: peptidylglycine alpha-hydroxy	0.497	0.579	0.589	4e-66
380011753	341	PREDICTED: peptidylglycine alpha-hydroxy	0.530	0.607	0.558	7e-66
332018566	333	Peptidylglycine alpha-hydroxylating mono	0.610	0.714	0.501	7e-66

>gi|307197054|gb|EFN78426.1| Peptidylglycine alpha-hydroxylating monooxygenase [Harpegnathos saltator]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 159/223 (71%), Gaps = 31/223 (13%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           IIYAWARDAP L LPEGVGFKVGGD+ IQYLVLQVHYAH++ F+DG TD SGVFL YT  
Sbjct: 92  IIYAWARDAPRLDLPEGVGFKVGGDSPIQYLVLQVHYAHIDHFKDGSTDDSGVFLHYTTH 151

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           PL K AGV+LLGTGG IPA  +E+ME+SC++ E+K I+PFAYRTHTH+LGK V GYV+K 
Sbjct: 152 PLNKLAGVILLGTGGIIPARKIEHMESSCVIKENKTIYPFAYRTHTHSLGKVVSGYVIKP 211

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG-----------------------Q 338
           NN      +W+ +GKRDPLTPQMFYPV   V I  G                       Q
Sbjct: 212 NN------KWIEIGKRDPLTPQMFYPVTNKVPITYGDILASRCTMKNTRDRVTFIGETNQ 265

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
           DEMCN Y+MY+VEN +PLE KYCF+ GPP+YYW     LNNIP
Sbjct: 266 DEMCNMYIMYYVENDTPLERKYCFTAGPPSYYW--KGRLNNIP 306

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712968|ref|XP_003395024.1| PREDICTED: peptidylglycine alpha-hydroxylating monooxygenase-like [Bombus terrestris]

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 154/223 (69%), Gaps = 30/223 (13%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWARDAP+LILPEGVGFKVGGD++I+YLVLQVHYAH   F+D  TD SGVFL YT R
Sbjct: 110 ILYAWARDAPTLILPEGVGFKVGGDSSIKYLVLQVHYAHTAKFQDAGTDDSGVFLYYTLR 169

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           PL K AGVLLLGTGG IP  S   MET+CI+ E+K IHPFAYRTHTH+LGK V GY++K 
Sbjct: 170 PLNKLAGVLLLGTGGVIPPRSTTYMETACIIKENKTIHPFAYRTHTHSLGKVVSGYLIKP 229

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ----------------------- 338
           +        W+ LGKRDPLTPQMFYP+  NV+  +G                        
Sbjct: 230 DYT------WIELGKRDPLTPQMFYPIHKNVSAEQGDQIAARCTMYNTRDSWTYIGPTKA 283

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
           DEMCNFYLMY+VEN  PL  KYCF+ GPPNYYW     L NIP
Sbjct: 284 DEMCNFYLMYYVENDEPLSMKYCFTSGPPNYYW-KNAGLFNIP 325

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285687|ref|XP_308418.4| AGAP007420-PA [Anopheles gambiae str. PEST] gi|157020113|gb|EAA04612.4| AGAP007420-PA [Anopheles gambiae str. PEST]

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 130/228 (57%), Positives = 159/228 (69%), Gaps = 27/228 (11%)

Query: 179 PGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHT-DSSGVFLQ 237
           P  IIYAWARDAP L LPEGVGFKVG D+ IQY+VLQVHYAH++ F+DG T D SG+F+ 
Sbjct: 190 PSQIIYAWARDAPKLELPEGVGFKVGKDSPIQYIVLQVHYAHIDKFKDGTTYDDSGIFIH 249

Query: 238 YTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGY 297
           YT +PL+K+AGV+LLGT G IP ++ E+M+T C + EDK IHPFAYRTHTH+LG+ V GY
Sbjct: 250 YTTKPLSKQAGVILLGTAGYIPPMATEHMDTLCDIQEDKVIHPFAYRTHTHSLGRMVSGY 309

Query: 298 VVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHK--------------------- 336
            ++K++     D+W LLGKRDPLTPQMFYPVE    I K                     
Sbjct: 310 RIRKDD--AGTDQWTLLGKRDPLTPQMFYPVESRDPIRKNDRLAARCTMESNRTRITKIG 367

Query: 337 --GQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDN-LNNIP 381
              +DEMCNFYLMY+VEN  PL+ KYCFS GPP + W   +  LN+IP
Sbjct: 368 ATNEDEMCNFYLMYYVENDEPLQMKYCFSNGPPLFRWSNRETELNHIP 415

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409073|ref|XP_003488599.1| PREDICTED: peptidylglycine alpha-hydroxylating monooxygenase-like [Bombus impatiens]

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 152/223 (68%), Gaps = 30/223 (13%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWARDAP+LILPEGVGFKVGGD++I+YLVLQVHYAH   F+D  TD SGVFL YT R
Sbjct: 110 ILYAWARDAPTLILPEGVGFKVGGDSSIKYLVLQVHYAHTAKFQDAGTDDSGVFLYYTLR 169

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           PL + AGVLLLGTGG IP  S   MET+C + E+K IHPFAYRTHTH+LGK V GY++K 
Sbjct: 170 PLNRLAGVLLLGTGGVIPPRSTTYMETACRIKENKTIHPFAYRTHTHSLGKVVSGYLIKP 229

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ----------------------- 338
           +        W+ LGKRDPLTPQMFY +  NV+  +G                        
Sbjct: 230 DYT------WIELGKRDPLTPQMFYLIHKNVSAEQGDQIAARCTMHSTRDSWTYIGATKA 283

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
           DEMCNFYLMY+VEN  PL  KYCF+ GPPNYYW     L NIP
Sbjct: 284 DEMCNFYLMYYVENDEPLSMKYCFTSGPPNYYW-KNAGLFNIP 325

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382551|ref|XP_002049993.1| GJ21893 [Drosophila virilis] gi|194144790|gb|EDW61186.1| GJ21893 [Drosophila virilis]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/225 (58%), Positives = 154/225 (68%), Gaps = 26/225 (11%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWARDAP L LP GVGFKVG ++  +YLVLQVHYAHV  F+DG TD SG+FLQYT +
Sbjct: 129 ILYAWARDAPKLDLPSGVGFKVGKNSPTKYLVLQVHYAHVGKFKDGSTDDSGIFLQYTEK 188

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           PLTK AG LLLGT G IP +  E+ME +C + E+K IHPFAYRTHTH LGK V GY V+ 
Sbjct: 189 PLTKLAGTLLLGTDGVIPPMKTEHMEAACEITENKTIHPFAYRTHTHGLGKVVSGYRVR- 247

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG-----------------------Q 338
            +N +   EW LLGKRDPLTPQMFY VE N  I  G                       +
Sbjct: 248 -SNAHGVQEWTLLGKRDPLTPQMFYNVENNSPIVAGDYVAARCTMKSTRQRTTEIGPTNE 306

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDN-LNNIPH 382
           DEMCNFYLMY+V+   PL+ KYCFS+GPPNYYW   D  L+NIP+
Sbjct: 307 DEMCNFYLMYYVDEGEPLDMKYCFSQGPPNYYWANPDTGLHNIPN 351

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185943|gb|EFN71745.1| Peptidylglycine alpha-hydroxylating monooxygenase [Camponotus floridanus]

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 156/223 (69%), Gaps = 31/223 (13%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           IIYAWARDAP L LP+GVGFKVGGD++IQY+VLQVHYAH++ F+DG TD+SGV L YT  
Sbjct: 79  IIYAWARDAPVLNLPDGVGFKVGGDSSIQYIVLQVHYAHIDHFKDGRTDNSGVILHYTTH 138

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
            + K AG++LLGTGG IP   V +METSC ++E+K I+PFAYRTHTH+LGK V GYVVK 
Sbjct: 139 AMNKLAGIILLGTGGVIPPREVVHMETSCPIIENKTIYPFAYRTHTHSLGKVVSGYVVKP 198

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG-----------------------Q 338
           NN      EW+ LGKRDPLTPQMFYPV   V I  G                       +
Sbjct: 199 NN------EWIELGKRDPLTPQMFYPVTNKVPITYGDRLTARCTMENIRDRPTYIGMTNE 252

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
           DEMCN Y+MY+VEN +PL+ KYCFS+GPP YYW    +  NIP
Sbjct: 253 DEMCNMYIMYYVENDTPLKRKYCFSQGPPMYYW--SQDFINIP 293

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787622|ref|XP_396350.2| PREDICTED: peptidylglycine alpha-hydroxylating monooxygenase [Apis mellifera]

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 150/223 (67%), Gaps = 30/223 (13%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWARDAP+LILPEGVGFKVGGD++I+YLVLQVHYAH+  F+DG TD SGVFL YT  
Sbjct: 119 ILYAWARDAPTLILPEGVGFKVGGDSSIKYLVLQVHYAHITQFQDGRTDDSGVFLYYTLN 178

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           PL K AGVLLLGT G IP      MET+C++ E+K IHP AYRTHTH+LGK V GYVVK 
Sbjct: 179 PLNKLAGVLLLGTSGIIPPRRTTYMETACMIKENKTIHPIAYRTHTHSLGKVVSGYVVKP 238

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ----------------------- 338
           +        W+ LGKRDPLTPQMFYPV   V+  +G                        
Sbjct: 239 DYT------WIELGKRDPLTPQMFYPVHNKVSASQGDQIAARCTMQSTRDSWTYIGATKN 292

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
           DEMCNFYLMY+VEN  PL  KYCF+ GPP YYW     L NIP
Sbjct: 293 DEMCNFYLMYYVENDKPLSMKYCFTAGPPRYYWK-DAGLFNIP 334

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861436|ref|XP_003706192.1| PREDICTED: peptidylglycine alpha-hydroxylating monooxygenase-like [Megachile rotundata]

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/224 (58%), Positives = 152/224 (67%), Gaps = 30/224 (13%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWARDAP+LILPEGVGFKVGGD+ I+YLVLQVHYAH++ F+DG TD SGVFL YT  
Sbjct: 113 ILYAWARDAPTLILPEGVGFKVGGDSPIKYLVLQVHYAHIDLFKDGRTDDSGVFLHYTLN 172

Query: 242 PLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKK 301
           PL K AGVLLLGT G IP  S   MET+C + E+K IHPFAYRTHTH+LGK V GY+VK 
Sbjct: 173 PLNKLAGVLLLGTSGVIPPRSTTYMETACTLKENKTIHPFAYRTHTHSLGKVVSGYLVKP 232

Query: 302 NNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ----------------------- 338
           +        W+ LGKRDPLTPQMFY V   V+  +G                        
Sbjct: 233 DYT------WIELGKRDPLTPQMFYRVHNEVSAGQGDRIAARCTMRSTRDIFTYIGSTKA 286

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPH 382
           DEMCNFYLMY+VEN  PL  KYCF+ GPP+YYW     L NIP+
Sbjct: 287 DEMCNFYLMYYVENDEPLSMKYCFTNGPPSYYWKYA-GLMNIPN 329

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011753|ref|XP_003689961.1| PREDICTED: peptidylglycine alpha-hydroxylating monooxygenase-like isoform 2 [Apis florea]

 Score =  257 bits (656), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 134/240 (55%), Positives = 156/240 (65%), Gaps = 33/240 (13%)

Query: 168 GMGDNLNNI---PHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGF 224
           G+ DN + +        I+YAWARDAP+LILPEGVGFKVGGD++I+YLVLQVHYAH+  F
Sbjct: 102 GINDNKDTMVPCAEDSQILYAWARDAPTLILPEGVGFKVGGDSSIKYLVLQVHYAHITQF 161

Query: 225 RDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYR 284
           +DG TD SGVFL YT  PL K AGVLLLGT G IP      MET+C++ E+K IHP AYR
Sbjct: 162 QDGRTDDSGVFLYYTLNPLNKLAGVLLLGTSGIIPPRRTTYMETACMIKENKTIHPIAYR 221

Query: 285 THTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGQ------ 338
           THTH+LGK V GY+VK +        W+ LGKRDPLTPQMFYPV   V+  +G       
Sbjct: 222 THTHSLGKVVSGYLVKPDYT------WIELGKRDPLTPQMFYPVHNKVSASQGDQIAARC 275

Query: 339 -----------------DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
                            DEMCNFYLMY+VEN  PL  KYCF+ GPP YYW     L NIP
Sbjct: 276 TMQSTRDSWTYIGATKNDEMCNFYLMYYVENDKPLSMKYCFTAGPPRYYWK-DAGLFNIP 334

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018566|gb|EGI59155.1| Peptidylglycine alpha-hydroxylating monooxygenase [Acromyrmex echinatior]

 Score =  257 bits (656), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 143/285 (50%), Positives = 176/285 (61%), Gaps = 47/285 (16%)

Query: 135 DEMCNFYLMYWVENSSPLETKY------CFSEGPPNYYWGMGD--NLNNIPHPGP----- 181
           D   N+Y++ +  N++ +ET +      C   G     W  G+  N+ ++    P     
Sbjct: 51  DYAKNYYIIGFEPNAT-METAHHMLVYGCTKPGSSKPIWNCGEMANVGHLADTAPACKEG 109

Query: 182 --IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYT 239
             IIYAWARDAP L LPEGVGFKVGGD+ IQY+VLQVHYAH++ F+DG TD SGVFL YT
Sbjct: 110 TQIIYAWARDAPKLDLPEGVGFKVGGDSPIQYIVLQVHYAHIDRFKDGRTDDSGVFLHYT 169

Query: 240 RRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
            + + K AGV+LLGT G IP  S  +ME+SC +ME K I+PFAYRTHTH+LGK V GYVV
Sbjct: 170 TQTMDKLAGVILLGTSGVIPRRSTVHMESSCPIMEKKTIYPFAYRTHTHSLGKVVSGYVV 229

Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG---------------------- 337
           K NN      +W+ LGKRDPLTPQMFYPV   V I  G                      
Sbjct: 230 KPNN------KWIELGKRDPLTPQMFYPVTNRVPITYGDKLAARCTMQSTRDRTTFIGGT 283

Query: 338 -QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIP 381
            +DEMCN Y+MY+V+  +PLE KYCF+ GPP YYW     L NIP
Sbjct: 284 NEDEMCNMYIMYYVKEGTPLERKYCFTAGPPLYYW--KQELINIP 326

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
FB|FBgn0019948	365	Phm "Peptidylglycine-alpha-hyd	0.379	0.405	0.635	4.2e-63
ZFIN|ZDB-GENE-090313-384	1017	pam "peptidylglycine alpha-ami	0.420	0.161	0.425	2.3e-37
WB|WBGene00022144	324	pghm-1 [Caenorhabditis elegans	0.448	0.540	0.445	4.4e-36
UNIPROTKB|D4AEC8	576	Pam "Peptidyl-glycine alpha-am	0.369	0.25	0.474	2.6e-35
UNIPROTKB|F1RN59	983	PAM "Uncharacterized protein"	0.379	0.150	0.481	1.5e-34
MGI|MGI:97475	979	Pam "peptidylglycine alpha-ami	0.379	0.151	0.468	3.1e-34
UNIPROTKB|D4A1N9	872	Pam "Peptidyl-glycine alpha-am	0.369	0.165	0.474	3.1e-34
UNIPROTKB|F1MZN4	954	PAM "Peptidylglycine alpha-hyd	0.379	0.155	0.468	3.5e-34
UNIPROTKB|F1MZB4	972	PAM "Peptidylglycine alpha-hyd	0.379	0.152	0.468	3.8e-34
UNIPROTKB|P10731	972	PAM "Peptidyl-glycine alpha-am	0.379	0.152	0.468	3.8e-34

FB|FBgn0019948 Phm "Peptidylglycine-alpha-hydroxylating monooxygenase" [Drosophila melanogaster (taxid:7227)]

 Score = 505 (182.8 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 96/151 (63%), Positives = 114/151 (75%)

Query:   177 PHPGP-IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVF 235
             PH    I+YAWARDA  L LPEGVGFKVG ++ I+YLVLQVHYAH++ F+DG TD SGVF
Sbjct:   131 PHSNSQIVYAWARDAQKLNLPEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVF 190

Query:   236 LQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQ 295
             L YT  P  K AG LLLGT G+IPA+  E++ET+C + E K +HPFAYR HTH LGK V 
Sbjct:   191 LDYTEEPRKKLAGTLLLGTDGQIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVS 250

Query:   296 GYVVKKNNNLNRKDEWLLLGKRDPLTPQMFY 326
             GY V+ N++   + EWL LGKRDPLTPQMFY
Sbjct:   251 GYRVRTNSD--GEQEWLQLGKRDPLTPQMFY 279

GO:0004504 "peptidylglycine monooxygenase activity" evidence=ISS;NAS

GO:0001519 "peptide amidation" evidence=NAS

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007613 "memory" evidence=IMP

GO:0005615 "extracellular space" evidence=IDA

GO:0032504 "multicellular organism reproduction" evidence=IEP

ZFIN|ZDB-GENE-090313-384 pam "peptidylglycine alpha-amidating monooxygenase" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
 Identities = 74/174 (42%), Positives = 97/174 (55%)

Query:   166 YWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFR 225
             YW  G  L        I+YAWAR+AP   LP+ VGFKVGGDT I Y VLQ+HY  V  FR
Sbjct:   119 YWDCGKELGTCRDQAKIMYAWARNAPPTKLPKDVGFKVGGDTRINYFVLQIHYGDVNNFR 178

Query:   226 DGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAY 283
             D H D SG+ L+ T +P    AG+ L+ +   +  P   V N + +C       ++PFA+
Sbjct:   179 DHHRDCSGLSLRMTSKPQPFIAGMYLMMSVDTLIPPGKKVTNADIACTYTSSP-MYPFAF 237

Query:   284 RTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG 337
             RTHTH+LGK V GY V       R  +W  +G++ PL PQ FYP    + +  G
Sbjct:   238 RTHTHSLGKVVSGYRV-------RNGQWTQIGRQSPLLPQAFYPATNTIDVKDG 284

GO:0016715 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

WB|WBGene00022144 pghm-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/191 (44%), Positives = 114/191 (59%)

Query:   157 CFSEGPPNYYWGMG------DNLNNIPHPG--P-IIYAWARDAPSLILPEGVGFKVGGDT 207
             C   G     W  G      D +   P  G  P I+YAWA DAP L LP+ VGF+VGGD+
Sbjct:    73 CEEPGSDELVWDCGEMNKPDDEMPRAPTCGSKPAILYAWALDAPPLELPQDVGFRVGGDS 132

Query:   208 AIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKIPALSVENME 267
              I++LV+QVHY H +       D +G+ + +T  P  K A  +LL TGG +P    E+ E
Sbjct:   133 NIRHLVMQVHYMHSKQ----EPDETGLEITHTEEPQPKLAATMLLVTGGTLPRNKTESFE 188

Query:   268 TSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYP 327
             T+C++ ED  +HPFAYRTHTH  GKEV G++VK++     +D W L+G+RDP   QMF P
Sbjct:   189 TACMIEEDVVMHPFAYRTHTHRHGKEVSGWLVKEDQK--HEDHWKLIGRRDPQLAQMFVP 246

Query:   328 VEVN-VTIHKG 337
             VE   +TI +G
Sbjct:   247 VEDQAMTIQQG 257

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0016715 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|D4AEC8 Pam "Peptidyl-glycine alpha-amidating monooxygenase" [Rattus norvegicus (taxid:10116)]

 Score = 338 (124.0 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
 Identities = 74/156 (47%), Positives = 95/156 (60%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct:   137 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 196

Query:   242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   197 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 255

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVT 333
                    R  +W L+G+++P  PQ FYPVE  V+VT
Sbjct:   256 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVT 284

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RN59 PAM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
 Identities = 76/158 (48%), Positives = 94/158 (59%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct:   141 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRL 200

Query:   242 PLTKEAGV-LLLGTGGKIPA-LSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L++     IPA   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   201 PQPLIAGMYLMMSVDTVIPAGEKVVNSDISC-HYKKYPMHVFAYRVHTHHLGKVVSGYRV 259

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG 337
                    R  +W L+G++ P  PQ FYPVE  V +  G
Sbjct:   260 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVSFG 290

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

MGI|MGI:97475 Pam "peptidylglycine alpha-amidating monooxygenase" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
 Identities = 74/158 (46%), Positives = 93/158 (58%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct:   136 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRV 195

Query:   242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   196 PQPLIAGMYLMMSVNTVIPPGEKVVNSDISC-HYKMYPMHVFAYRVHTHHLGKVVSGYRV 254

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG 337
                    R  +W L+G++ P  PQ FYPVE  V +  G
Sbjct:   255 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVAFG 285

GO:0001519 "peptide amidation" evidence=ISO

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=ISO;TAS

GO:0004598 "peptidylamidoglycolate lyase activity" evidence=ISO

GO:0005507 "copper ion binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005615 "extracellular space" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006518 "peptide metabolic process" evidence=ISO;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0009268 "response to pH" evidence=ISO

GO:0009404 "toxin metabolic process" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016715 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0018032 "protein amidation" evidence=ISO

GO:0019538 "protein metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO

GO:0030667 "secretory granule membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050708 "regulation of protein secretion" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

UNIPROTKB|D4A1N9 Pam "Peptidyl-glycine alpha-amidating monooxygenase" [Rattus norvegicus (taxid:10116)]

 Score = 338 (124.0 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
 Identities = 74/156 (47%), Positives = 95/156 (60%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct:   137 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 196

Query:   242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   197 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 255

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVT 333
                    R  +W L+G+++P  PQ FYPVE  V+VT
Sbjct:   256 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVT 284

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1MZN4 PAM "Peptidylglycine alpha-hydroxylating monooxygenase" [Bos taurus (taxid:9913)]

 Score = 340 (124.7 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
 Identities = 74/158 (46%), Positives = 93/158 (58%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct:   132 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRL 191

Query:   242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   192 PQPLIAGMYLMMSVDTVIPPGGKVVNSDISC-HYKKYPMHVFAYRVHTHHLGKVVSGYRV 250

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG 337
                    R  +W L+G++ P  PQ FYPVE  V +  G
Sbjct:   251 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVSFG 281

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|F1MZB4 PAM "Peptidylglycine alpha-hydroxylating monooxygenase" [Bos taurus (taxid:9913)]

 Score = 340 (124.7 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
 Identities = 74/158 (46%), Positives = 93/158 (58%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct:   132 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRL 191

Query:   242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   192 PQPLIAGMYLMMSVDTVIPPGGKVVNSDISC-HYKKYPMHVFAYRVHTHHLGKVVSGYRV 250

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG 337
                    R  +W L+G++ P  PQ FYPVE  V +  G
Sbjct:   251 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVSFG 281

GO:0016020 "membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

UNIPROTKB|P10731 PAM "Peptidyl-glycine alpha-amidating monooxygenase" [Bos taurus (taxid:9913)]

 Score = 340 (124.7 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
 Identities = 74/158 (46%), Positives = 93/158 (58%)

Query:   182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
             I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV L  TR 
Sbjct:   132 ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSLHLTRL 191

Query:   242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
             P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct:   192 PQPLIAGMYLMMSVDTVIPPGGKVVNSDISC-HYKKYPMHVFAYRVHTHHLGKVVSGYRV 250

Query:   300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG 337
                    R  +W L+G++ P  PQ FYPVE  V +  G
Sbjct:   251 -------RNGQWTLIGRQSPQLPQAFYPVEHPVDVSFG 281

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0004598 "peptidylamidoglycolate lyase activity" evidence=IEA

GO:0004504 "peptidylglycine monooxygenase activity" evidence=IEA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006518 "peptide metabolic process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O01404	PHM_DROME	1, ., 1, 4, ., 1, 7, ., 3	0.5422	0.5102	0.5452	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.17	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	390
pfam03712	157	pfam03712, Cu2_monoox_C, Copper type II ascorbate-	8e-36
pfam03712	157	pfam03712, Cu2_monoox_C, Copper type II ascorbate-	1e-29
pfam01082	128	pfam01082, Cu2_monooxygen, Copper type II ascorbat	2e-15

>gnl|CDD|217685 pfam03712, Cu2_monoox_C, Copper type II ascorbate-dependent monooxygenase, C-terminal domain

 Score =  128 bits (323), Expect = 8e-36
 Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 34/155 (21%)

Query: 245 KEAGVLLLGTGGK-IPALSVE-NMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKN 302
            +AG++LLG+G   IP       +E SC +   K + PFAYRTHTH LG+ V GY+V+  
Sbjct: 2   YDAGIMLLGSGYFAIPPGQTAYPVEGSCEIECTKTMFPFAYRTHTHLLGRVVSGYLVRDG 61

Query: 303 NNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVTIHKG----------------------- 337
                  EW L+G+ DP  P  Q FYP+E  V +  G                       
Sbjct: 62  E------EWTLIGRDDPYDPNWQAFYPLESPVEVLPGDKLAARCTYDSTSRNTPVLGGET 115

Query: 338 -QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYW 371
             DEMCNFY+MY+ + S     K C S G P+ Y+
Sbjct: 116 TSDEMCNFYIMYYPDQSELEPCKSCVSNGTPDDYF 150

The N and C-terminal domains of members of this family adopt the same PNGase F-like fold. Length = 157

>gnl|CDD|217685 pfam03712, Cu2_monoox_C, Copper type II ascorbate-dependent monooxygenase, C-terminal domain

 Score =  112 bits (281), Expect = 1e-29
 Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 65  KEVQGYVVKKNNNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVTIHKGDVMAARCVMKNY 122
           + V GY+V+         EW L+G+ DP  P  Q FYP+E  V +  GD +AARC   + 
Sbjct: 51  RVVSGYLVRDGE------EWTLIGRDDPYDPNWQAFYPLESPVEVLPGDKLAARCTYDST 104

Query: 123 -RNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYW 167
            RN     G T  DEMCNFY+MY+ + S     K C S G P+ Y+
Sbjct: 105 SRNTPVLGGETTSDEMCNFYIMYYPDQSELEPCKSCVSNGTPDDYF 150

The N and C-terminal domains of members of this family adopt the same PNGase F-like fold. Length = 157

>gnl|CDD|216290 pfam01082, Cu2_monooxygen, Copper type II ascorbate-dependent monooxygenase, N-terminal domain

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHT 229
           ++ AWAR AP  + P+ VG  +GG   I+YLVL+VHY +   F+DG  
Sbjct: 82  VVAAWARGAPPFVYPKEVGLPIGGSGGIRYLVLEVHYNNPN-FKDGEV 128

The N and C-terminal domains of members of this family adopt the same PNGase F-like fold. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG3568|consensus	603		100.0
KOG3567|consensus	501		100.0
PF03712	156	Cu2_monoox_C: Copper type II ascorbate-dependent m	99.95
PF01082	132	Cu2_monooxygen: Copper type II ascorbate-dependent	99.92
KOG3567|consensus	501		99.89
PF03712	156	Cu2_monoox_C: Copper type II ascorbate-dependent m	99.53
KOG3568|consensus	603		80.76

>KOG3568|consensus

Probab=100.00  E-value=1.2e-60  Score=478.29  Aligned_cols=302  Identities=25%  Similarity=0.376  Sum_probs=250.3

Q ss_pred             cccccc---ccccceeEEeEEeecCCccCCCCcE------------EEeeecCCCCCc----cc-cCcccceEecCCCee
Q psy9901          54 TCHPSS---KLKNSKEVQGYVVKKNNNLNRKDEW------------LLLGKRDPLTPQ----MF-YPVEVNVTIHKGDVM  113 (390)
Q Consensus        54 ~~~~~~---~~~~~~~vsGy~v~~~~~~~~~~~w------------~ligk~~P~~PQ----~F-~pv~~~v~I~~gD~~  113 (390)
                      ||-|-.   +-.+.+||-||...+.    ++..|            .++-+-+...|.    .| ..+++++.||..++ 
T Consensus       138 TCDp~Dy~i~dgTv~vv~a~~eed~----r~l~~v~~~~~~~v~~~~~l~p~ki~epet~~d~~meivnqn~piPsqeT-  212 (603)
T KOG3568|consen  138 TCDPNDYSITDGTVRVVWAYLEEDA----RELGPVYHDSNRGVKSLRLLNPEKISEPETALDYFMEIVNQNVPIPSQET-  212 (603)
T ss_pred             cCCccceeccCCeEEEEEEEeccch----hhccccccccccceeeeeccCCccccCcccccchheeeecCCCCCCCccc-
Confidence            454543   4678999999887654    22112            222222222332    34 55777999999975 


Q ss_pred             eEEEEeecC-----CCeeEEEc---cCCCccceEEEEEEEEcCC----CCccccccCCCCCCCCccccCCCCCCCCCCCC
Q psy9901         114 AARCVMKNY-----RNHETYVG---STGQDEMCNFYLMYWVENS----SPLETKYCFSEGPPNYYWGMGDNLNNIPHPGP  181 (390)
Q Consensus       114 ayrC~~~~~-----~~~~~~iG---~~gndemVHH~imY~c~~~----~~~~~~~C~spg~P~~~W~C~~~~~~ip~~~~  181 (390)
                      +|||.+.++     ++|+|+++   .+||+.+||||.+|.|.++    .+..++.|+++..|+.+-.|          +.
T Consensus       213 TYwC~i~klp~~~~rhHvik~EP~it~Gne~LVHHmevfqC~~~e~deve~~sg~C~~p~kPdr~k~C----------sh  282 (603)
T KOG3568|consen  213 TYWCQIFKLPVFQERHHVIKVEPVITRGNESLVHHMEVFQCSNNEDDEVESGSGECYHPNKPDRFKTC----------SH  282 (603)
T ss_pred             eEEEEEEecccccccceeEEeeeeeecCChhheeeeeEeeccCCCccccccCCCcCCCCCCCchhhhH----------HH
Confidence            899999964     57778876   8999999999999999963    23567899999888777666          79


Q ss_pred             ceeEeecCCCCcccCCCcceeecCCCCccEEEEEEeeccccCCCCCcccCCCceEEEecCCcceeeEEEeecC----CCc
Q psy9901         182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGT----GGK  257 (390)
Q Consensus       182 il~aWA~Ga~~~~lP~gvG~~iG~~s~~~~lvLQvHY~np~~~~~g~~D~SGirL~~T~~~r~~~aGvl~~g~----~~~  257 (390)
                      +|+|||.||++|.||+++|++||+..++.|++|||||+||. ..+|..|+||+||+||.++|+||||||++|.    .|.
T Consensus       283 ViaaWAmGag~f~YP~eaGLpiGgpg~n~Yv~lEVHynNPe-~~eGliDnSGfrlf~T~~LRkydAgvmElGL~ysd~~a  361 (603)
T KOG3568|consen  283 VIAAWAMGAGGFSYPPEAGLPIGGPGDNHYVRLEVHYNNPE-YEEGLIDNSGFRLFYTMDLRKYDAGVMELGLWYSDFMA  361 (603)
T ss_pred             HHHHHHhcCCCccCCcccCCcCCCCCCCceEEEEEecCCch-hhcccccCCceEEEEeeehhhccchheeeeeEeeeccc
Confidence            99999999999999999999999999999999999999996 4899999999999999999999999999998    689


Q ss_pred             cCCCCccee-EeEEe----e--cCCCceEEEEeccccccccceEEEEEEecCeecC----------CCcceE------Ee
Q psy9901         258 IPALSVENM-ETSCI----M--MEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN----------RKDEWL------LL  314 (390)
Q Consensus       258 IPPg~~~~~-~~~C~----~--~~~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~----------~~~e~~------~l  314 (390)
                      ||||+++|. ++.|.    .  .+..+|+|||+.+|+||.||++.++|+|+|+|+.          +.||++      .+
T Consensus       362 IPP~qtaf~l~GyC~~~ct~aalP~~GIhIFasqLHaHLtGrkv~t~hfR~g~e~~~vnrDdhysphfQe~q~Lk~vv~V  441 (603)
T KOG3568|consen  362 IPPGQTAFQLEGYCLEECTEAALPSEGIHIFASQLHAHLTGRKVRTRHFRKGKEMKLVNRDDHYSPHFQEFQYLKEVVTV  441 (603)
T ss_pred             cCCCCccccccCcCHHHHhhhcCCccceEeeHHhhhhhhccceeEeEeecCCceeeeeccccccChhHHHHHhhccccee
Confidence            999999986 66663    2  3577999999999999999999999999999763          235544      45


Q ss_pred             CCCCCceeEEEEecCCCcccccC----CccccccceeeeecCCCCccccccccCCCCCceeccCC
Q psy9901         315 GKRDPLTPQMFYPVEVNVTIHKG----QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGD  375 (390)
Q Consensus       315 ~~gD~l~~qc~Y~~~~~~~i~~G----~dEMC~~yl~YYP~~~~~~~~~~C~s~~~~~~~~~~~~  375 (390)
                      -+||.|+++|.|+|+++..++||    .||||++||+|||.    ++++.|+|..+.....++|.
T Consensus       442 lPGD~LiTtC~YnTkdr~~at~GGfsi~dEMCvnYi~YYPa----t~levCkSavd~~tl~~yf~  502 (603)
T KOG3568|consen  442 LPGDNLITTCRYNTKDRAEATWGGFSIRDEMCVNYIHYYPA----TNLEVCKSAVDIMTLLQYFG  502 (603)
T ss_pred             cCCCceEEEEEeccccchheeeccceehhhhhhhheeeccc----cchhhhhhhcCHHHHHHHHH
Confidence            57999999999999999999999    99999999999999    99999999998765555554

>KOG3567|consensus

Probab=100.00  E-value=2.4e-35  Score=296.70  Aligned_cols=264  Identities=35%  Similarity=0.545  Sum_probs=208.1

Q ss_pred             eeEEEEeecC-CCeeEEE---ccCCCccceEEEEEEEEcCCCCccccccCCCCCCCCccccCCCCC-CCCCCCCceeEee
Q psy9901         113 MAARCVMKNY-RNHETYV---GSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLN-NIPHPGPIIYAWA  187 (390)
Q Consensus       113 ~ayrC~~~~~-~~~~~~i---G~~gndemVHH~imY~c~~~~~~~~~~C~spg~P~~~W~C~~~~~-~ip~~~~il~aWA  187 (390)
                      +.|-|+-... ++...|+   ....+-..+|||++|-|+.           |++...+|.|.++.- +.-..+.++++||
T Consensus        72 d~Y~~~~~ei~~~~e~yvv~f~p~A~~~~~hhmll~Gc~~-----------pas~~v~w~~~e~vwtcg~~n~~ilyawa  140 (501)
T KOG3567|consen   72 DTYLCVSQEIEEDAENYVVGFKPRATMGTVHHMLLFGCVM-----------PASHIVAWHCGERVWTCGGDNSNILYAWA  140 (501)
T ss_pred             ccccceeeeccCCCcceEEeccChhhccccceeeEEeccc-----------CCCceEEEeccCccCCCCCCcchhhHHhh
Confidence            4699988875 4444442   3667778899999997763           445566777766531 2124578999999


Q ss_pred             cCCCCcccCCCcceeecCCCCccEEEEEEeeccccCCCCCcccCCCceEEEecCCcceeeEEEeecC-CCccCCCCccee
Q psy9901         188 RDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGT-GGKIPALSVENM  266 (390)
Q Consensus       188 ~Ga~~~~lP~gvG~~iG~~s~~~~lvLQvHY~np~~~~~g~~D~SGirL~~T~~~r~~~aGvl~~g~-~~~IPPg~~~~~  266 (390)
                      +|+++..+|++|||++|+.++++|+||||||..+..+ .+..|-||+.+++|.++++++|+++++.+ .+.||++.+.+.
T Consensus       141 r~ap~l~lp~~V~f~vG~~q~iky~vlqvhyg~t~df-~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~tvp~~~~~~f~  219 (501)
T KOG3567|consen  141 RGAPNLKLPKGVGFRVGGEQGIKYFVLQVHYGLTIDF-DGNYDVTGVGMHQTEKPQPKLAKTMLLLGDGTVPGEGTKHFE  219 (501)
T ss_pred             hCCCcccchhhhccccccccCcceeEEEeccccccCC-CCCcccccceeeeeccCCchhhceEEeecCCccCCCCccccC
Confidence            9999999999999999999999999999999987655 78899999999999999999999988887 577888888776


Q ss_pred             E-eEEeecCCCceEEEEeccccccccceEEEEEEe---cCeecC---C----------CcceEEeCCCCCceeEEEEecC
Q psy9901         267 E-TSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVK---KNNNLN---R----------KDEWLLLGKRDPLTPQMFYPVE  329 (390)
Q Consensus       267 ~-~~C~~~~~~~I~ifa~~~H~HllGr~v~~~~~R---~g~el~---~----------~~e~~~l~~gD~l~~qc~Y~~~  329 (390)
                      . ++|.++...+|++||++.|+|.||+.+++++++   +|.+..   +          .++...|..||.+..||+.++.
T Consensus       220 ~~tsc~v~~n~~ihvfa~r~hTh~Lgk~vsG~lv~q~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s~  299 (501)
T KOG3567|consen  220 TPTSCAVEENGPIHVFAYRCHTHILGKVVSGYLVAQKHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVRCFFQSL  299 (501)
T ss_pred             CCceEEEecCcceeeEEeeeeehhhcceeeeeEeeeccCcceeeccccCCCchhhhcCCCcceeeecCCceEEEEEEccC
Confidence            4 799998889999999999999999999999965   333210   1          1223344456777778888774


Q ss_pred             C-CcccccC---CccccccceeeeecCCCCccccc-cccCCCCCcee-ccCCCCCCCCCCCCCCC
Q psy9901         330 V-NVTIHKG---QDEMCNFYLMYWVENSSPLETKY-CFSEGPPNYYW-GMGDNLNNIPHPGPVSN  388 (390)
Q Consensus       330 ~-~~~i~~G---~dEMC~~yl~YYP~~~~~~~~~~-C~s~~~~~~~~-~~~~~~~~~~~~~~~~~  388 (390)
                      + ..++..|   .||||++|+|||+++...+.... |.|...+.++| .-...++.||+.+++.|
T Consensus       300 ~~~rtt~~g~~~~Demcnfymmy~~dake~~~~~~gc~s~~~~~~~~s~p~~~~~~ip~~~~~~n  364 (501)
T KOG3567|consen  300 GRNRTTLIGGTPEDEMCNFYMMYYIDAKEHLLIGTGCNSEYAPDMFFSIPMQGLKLIPKAKGVRN  364 (501)
T ss_pred             CcCceeecCCCccccccceEEEEEeccccceecccCCCCCCchhheeecCcccCcccccccccCc
Confidence            3 3345555   99999999999999766666655 99999999999 55568999999888754

>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A

Probab=99.95  E-value=8.1e-28  Score=216.09  Aligned_cols=130  Identities=32%  Similarity=0.483  Sum_probs=91.3

Q ss_pred             ceeeEEEeecC-CCccCCCCccee-EeEEeecCCCceEEEEeccccccccceEEEEEEecCeecC----------CCc--
Q psy9901         244 TKEAGVLLLGT-GGKIPALSVENM-ETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN----------RKD--  309 (390)
Q Consensus       244 ~~~aGvl~~g~-~~~IPPg~~~~~-~~~C~~~~~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~----------~~~--  309 (390)
                      ||+||||++|. .+.||||+++|. .+.|+.....++.+||+++|||++||+++++++|+|+++.          +.|  
T Consensus         1 k~~agvl~~g~~~~~IPP~~~~~~~~~~C~~~~~~~~~~fa~~~H~H~lG~~~~~~~~r~~~~~~~l~~~~~~dfn~Q~~   80 (156)
T PF03712_consen    1 KYDAGVLELGSSYFSIPPGAESFTVEGSCPYECTEPIFPFAVRPHMHLLGRSMRARHVRPGGEWEPLGRIPPYDFNWQEF   80 (156)
T ss_dssp             --EEEEEEEEESSEEE-TT-SEEEEEEEEE---SS-EEEEEEEEEESTTEEEEEEEEEETTE-EEEEEEE-TTS----S-
T ss_pred             CcEEEEEEEcccccccCcCCCcEEEEEEEeCCCCcceeEEEEEEEeccCceEEEEEEECCCCceEEEEecCCCCCcccee
Confidence            68999999999 679999999976 6689887678899999999999999999999999987431          123  


Q ss_pred             ----ceEEeCCCCCceeEEEEecCCC-cccccC---CccccccceeeeecCCCCccccccccCCCCCceecc
Q psy9901         310 ----EWLLLGKRDPLTPQMFYPVEVN-VTIHKG---QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGM  373 (390)
Q Consensus       310 ----e~~~l~~gD~l~~qc~Y~~~~~-~~i~~G---~dEMC~~yl~YYP~~~~~~~~~~C~s~~~~~~~~~~  373 (390)
                          +...|.+||.|..+|+||++++ ..+.+|   .||||++|++|||++.......+|.|...+..+|..
T Consensus        81 y~l~~~v~i~~GD~l~~~C~Ydns~~~~~v~~G~~t~DEMC~~~l~yyp~~~~~~~~~~~~~~~~~~~~~~~  152 (156)
T PF03712_consen   81 YPLKEPVTIPPGDTLRTECTYDNSDRPRVVFGGEGTTDEMCNFYLMYYPDQSELESCKSCPSSETPDNYFQT  152 (156)
T ss_dssp             EEEEEEEEE-TT-EEEEEEEEE-TT-SS-EEBSSSTTSB-EEEEEEEEEETTT--SEEEE-SBS-GG-GGGG
T ss_pred             EECCCceEecCCCEEEEEEEEeCCCCCceeecCCCCcchHHhhhhheecCccccchhhhcCCCCChhhHhhc
Confidence                3457889999999999999765 456677   999999999999975555556778888888766644

...

>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor

Probab=99.92  E-value=2.3e-25  Score=194.99  Aligned_cols=119  Identities=33%  Similarity=0.572  Sum_probs=73.5

Q ss_pred             cccCcccceEecCCCeeeEEEEeecC----C-CeeEEEc-cCCCccceEEEEEEEEcCCC-Cc---cccccCCCCCCCCc
Q psy9901          97 MFYPVEVNVTIHKGDVMAARCVMKNY----R-NHETYVG-STGQDEMCNFYLMYWVENSS-PL---ETKYCFSEGPPNYY  166 (390)
Q Consensus        97 ~F~pv~~~v~I~~gD~~ayrC~~~~~----~-~~~~~iG-~~gndemVHH~imY~c~~~~-~~---~~~~C~spg~P~~~  166 (390)
                      .|....++++||..+ ++|||+++++    + ++++.++ ..++.++||||++|.|+++. ++   ....|.+++.+...
T Consensus         3 ~~dl~~~~v~vP~~~-t~Y~C~~~~lp~~~~~~hIi~~ep~~~~~~~VHHmlly~C~~~~~~~~~~~~~~C~~~~~~~~~   81 (132)
T PF01082_consen    3 TFDLLMPNVTVPSQD-TTYWCFVFKLPDLTEKHHIIGFEPIITNGEVVHHMLLYGCDGDNDPLSRESGGECYSANMPGDF   81 (132)
T ss_dssp             -EEEE-SSB---SSS-SEEEEEEEE-S-S-S-EEEEEEEEE--T-TTEEEEEEEEES---SBSSSSSSEEG-------GG
T ss_pred             eEEEEcCCcCcCCCC-CeEEEEEEECCcccccceEEEeeeeeccCCcEEEEEEEEECCCCccCcccCCCcccceeccccc
Confidence            456677889999995 6899999964    2 3444554 44444999999999999752 21   24567666666655


Q ss_pred             cccCCCCCCCCCCCCceeEeecCCCCcccCCCcceeecCCCCccEEEEEEeeccccCCCCC
Q psy9901         167 WGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDG  227 (390)
Q Consensus       167 W~C~~~~~~ip~~~~il~aWA~Ga~~~~lP~gvG~~iG~~s~~~~lvLQvHY~np~~~~~g  227 (390)
                      ..|          .++|+|||+|+++|.||++|||+||++++++|+||||||+||+. .+|
T Consensus        82 ~~C----------~~ii~aWA~Ga~~~~~P~~vG~~iG~~~~~~~~vlevHY~np~~-~~g  131 (132)
T PF01082_consen   82 GSC----------STIIAAWAPGAPPFYYPEGVGFPIGGPTGPRYLVLEVHYNNPNR-KSG  131 (132)
T ss_dssp             -SB-----------EEEEEEETTB------TTEEEEESTTTSBSEEEEEEEESSGGG-CT-
T ss_pred             ccc----------cceEEEEcCCCCcccccccccEEcCCCCCCCEEEEEEeECCccc-ccc
Confidence            555          79999999999999999999999999889999999999999853 444

This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....

>KOG3567|consensus

Probab=99.89  E-value=1.9e-23  Score=211.03  Aligned_cols=152  Identities=30%  Similarity=0.508  Sum_probs=132.7

Q ss_pred             eeeeeeecCCcCceEEeeeeec-cCCCccceeeeeec--------------cccc-----cccccc----ccccceeEEe
Q psy9901          14 VHCDLIRLNNTDHIVHTSDISI-SDKNIVGTQIFGYE--------------NPCK-----TCHPSS----KLKNSKEVQG   69 (390)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~~-----~~~~~~----~~~~~~~vsG   69 (390)
                      +|++.| +++.|.++|+++++. +..+++++-++--+              ++|.     .+||||    ||-+||+|||
T Consensus       172 g~t~df-~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~tvp~~~~~~f~~~tsc~v~~n~~ihvfa~r~hTh~Lgk~vsG  250 (501)
T KOG3567|consen  172 GLTIDF-DGNYDVTGVGMHQTEKPQPKLAKTMLLLGDGTVPGEGTKHFETPTSCAVEENGPIHVFAYRCHTHILGKVVSG  250 (501)
T ss_pred             ccccCC-CCCcccccceeeeeccCCchhhceEEeecCCccCCCCccccCCCceEEEecCcceeeEEeeeeehhhcceeee
Confidence            567778 999999999999998 57777766555444              4884     899999    7999999999


Q ss_pred             EEeecCCccCCCCcEEEeeecCCCCCccccCcccceEecCCCeeeEEEEeec-CCCeeEEEccCCCccceEEEEEEEEcC
Q psy9901          70 YVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKN-YRNHETYVGSTGQDEMCNFYLMYWVEN  148 (390)
Q Consensus        70 y~v~~~~~~~~~~~w~ligk~~P~~PQ~F~pv~~~v~I~~gD~~ayrC~~~~-~~~~~~~iG~~gndemVHH~imY~c~~  148 (390)
                      |+|..    +++++|++||||+|||||+|+++++.+.|..||..++||++.+ .+.+.+++|.++.|||||+|+||+.+.
T Consensus       251 ~lv~q----~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s~~~~rtt~~g~~~~Demcnfymmy~~da  326 (501)
T KOG3567|consen  251 YLVAQ----KHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVRCFFQSLGRNRTTLIGGTPEDEMCNFYMMYYIDA  326 (501)
T ss_pred             eEeee----ccCcceeeccccCCCchhhhcCCCcceeeecCCceEEEEEEccCCcCceeecCCCccccccceEEEEEecc
Confidence            99983    4789999999999999999999999999999999999999998 588999999999999999999999998


Q ss_pred             CCCc-cccccCCCCCCCCccccC
Q psy9901         149 SSPL-ETKYCFSEGPPNYYWGMG  170 (390)
Q Consensus       149 ~~~~-~~~~C~spg~P~~~W~C~  170 (390)
                      ...+ ...+|++++.|..+|...
T Consensus       327 ke~~~~~~gc~s~~~~~~~~s~p  349 (501)
T KOG3567|consen  327 KEHLLIGTGCNSEYAPDMFFSIP  349 (501)
T ss_pred             ccceecccCCCCCCchhheeecC
Confidence            6554 334499999999999654

>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A

Probab=99.53  E-value=4.4e-14  Score=127.15  Aligned_cols=125  Identities=32%  Similarity=0.542  Sum_probs=88.9

Q ss_pred             Cccceeee-eeccccc-----cccccc----ccccceeEEeEEeecCCccCCCCcEEEeeecCCCCC--ccccCcccceE
Q psy9901          39 NIVGTQIF-GYENPCK-----TCHPSS----KLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVT  106 (390)
Q Consensus        39 ~~~~~~~~-~~~~~~~-----~~~~~~----~~~~~~~vsGy~v~~~~~~~~~~~w~ligk~~P~~P--Q~F~pv~~~v~  106 (390)
                      .|-|.+-. ..+..|+     .+||||    +|.+||.++++.++++      ++|+.|++.+++.+  |.||++++.++
T Consensus        15 ~IPP~~~~~~~~~~C~~~~~~~~~~fa~~~H~H~lG~~~~~~~~r~~------~~~~~l~~~~~~dfn~Q~~y~l~~~v~   88 (156)
T PF03712_consen   15 SIPPGAESFTVEGSCPYECTEPIFPFAVRPHMHLLGRSMRARHVRPG------GEWEPLGRIPPYDFNWQEFYPLKEPVT   88 (156)
T ss_dssp             EE-TT-SEEEEEEEEE---SS-EEEEEEEEEESTTEEEEEEEEEETT------E-EEEEEEE-TTS----S-EEEEEEEE
T ss_pred             ccCcCCCcEEEEEEEeCCCCcceeEEEEEEEeccCceEEEEEEECCC------CceEEEEecCCCCCccceeEECCCceE
Confidence            44444444 5666675     689999    6999999999999754      46999999999999  99999999999


Q ss_pred             ecCCCeeeEEEEeec-CCCeeEEEccCCCccceEEEEEEEEcCCCCccccccCCCCCCC-Ccccc
Q psy9901         107 IHKGDVMAARCVMKN-YRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPN-YYWGM  169 (390)
Q Consensus       107 I~~gD~~ayrC~~~~-~~~~~~~iG~~gndemVHH~imY~c~~~~~~~~~~C~spg~P~-~~W~C  169 (390)
                      |++||.+..+|++++ .+++.++.|...+||||+.+++|+-+......-..|.+...+. ++++|
T Consensus        89 i~~GD~l~~~C~Ydns~~~~~v~~G~~t~DEMC~~~l~yyp~~~~~~~~~~~~~~~~~~~~~~~~  153 (156)
T PF03712_consen   89 IPPGDTLRTECTYDNSDRPRVVFGGEGTTDEMCNFYLMYYPDQSELESCKSCPSSETPDNYFQTM  153 (156)
T ss_dssp             E-TT-EEEEEEEEE-TT-SS-EEBSSSTTSB-EEEEEEEEEETTT--SEEEE-SBS-GG-GGGGS
T ss_pred             ecCCCEEEEEEEEeCCCCCceeecCCCCcchHHhhhhheecCccccchhhhcCCCCChhhHhhcc
Confidence            999999999999998 5788899999999999999999998765544556677666664 44444

...

>KOG3568|consensus

Probab=80.76  E-value=1.8  Score=45.81  Aligned_cols=88  Identities=24%  Similarity=0.374  Sum_probs=68.6

Q ss_pred             cccccc----ccccceeEEeEEeecCCccCCCCcEEEeeecCCCCC--ccccCcccceEecCCCeeeEEEEeecCC-Cee
Q psy9901          54 TCHPSS----KLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTP--QMFYPVEVNVTIHKGDVMAARCVMKNYR-NHE  126 (390)
Q Consensus        54 ~~~~~~----~~~~~~~vsGy~v~~~~~~~~~~~w~ligk~~P~~P--Q~F~pv~~~v~I~~gD~~ayrC~~~~~~-~~~  126 (390)
                      .+|=||    +|-+||-|--.-++      ++-+|.+..+-+=.-|  |-|.-....++|-+||.+--.|++...+ ...
T Consensus       388 GIhIFasqLHaHLtGrkv~t~hfR------~g~e~~~vnrDdhysphfQe~q~Lk~vv~VlPGD~LiTtC~YnTkdr~~a  461 (603)
T KOG3568|consen  388 GIHIFASQLHAHLTGRKVRTRHFR------KGKEMKLVNRDDHYSPHFQEFQYLKEVVTVLPGDNLITTCRYNTKDRAEA  461 (603)
T ss_pred             ceEeeHHhhhhhhccceeEeEeec------CCceeeeeccccccChhHHHHHhhcccceecCCCceEEEEEeccccchhe
Confidence            789999    67778766544443      2356888888887777  7787788889999999999999999754 455


Q ss_pred             EEEccCCCccceEEEEEEEEc
Q psy9901         127 TYVGSTGQDEMCNFYLMYWVE  147 (390)
Q Consensus       127 ~~iG~~gndemVHH~imY~c~  147 (390)
                      ++=|..-.+|||--||.|+=.
T Consensus       462 t~GGfsi~dEMCvnYi~YYPa  482 (603)
T KOG3568|consen  462 TWGGFSIRDEMCVNYIHYYPA  482 (603)
T ss_pred             eeccceehhhhhhhheeeccc
Confidence            555667789999999999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
1sdw_A	314	Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating M		1e-35
4e4z_A	312	Oxidized (cu2+) Peptidylglycine Alpha-hydroxylating		1e-35
1yjk_A	306	Reduced Peptidylglycine Alpha-Hydroxylating Monooxy		1e-35
1yip_A	311	Oxidized Peptidylglycine Alpha-hydroxylating Monoox		1e-35
1opm_A	310	Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating		2e-35
1yjl_A	306	Reduced Peptidylglycine Alpha-Hydroxylating Monooxy		3e-35
1yi9_A	309	Crystal Structure Analysis Of The Oxidized Form Of		3e-35

>pdb|1SDW|A Chain A, Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygenase With Bound Peptide And Dioxygen Length = 314

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 95  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 154
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 155 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 213
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 214 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 266
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 267 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 313

>pdb|4E4Z|A Chain A, Oxidized (cu2+) Peptidylglycine Alpha-hydroxylating Monooxygenase (phm) In Complex With Hydrogen Peroxide (1.98 A) Length = 312

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 93  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 152
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 153 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 211
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 212 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 264
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 265 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 311

>pdb|1YJK|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) In A New Crystal Form Length = 306

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 88  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 147
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 148 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 206
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 207 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 259
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 260 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 306

>pdb|1YIP|A Chain A, Oxidized Peptidylglycine Alpha-hydroxylating Monooxygenase (phm) In A New Crystal Form Length = 311

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 93  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 152
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 153 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 211
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 212 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 264
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 265 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 311

>pdb|1OPM|A Chain A, Oxidized (Cu2+) Peptidylglycine Alpha-Hydroxylating Monooxygenase (Phm) With Bound Substrate Length = 310

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 114/215 (53%), Gaps = 34/215 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 93  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 152
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 153 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 211
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 212 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 264
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYY 370
              DEMCN Y+MY++E    L    C     P+ +
Sbjct: 265 TSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMF 299

>pdb|1YJL|A Chain A, Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase In A New Crystal Form Length = 306

Iteration: 1
 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 88  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 147
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 148 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 206
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 207 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 259
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DE+CN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 260 TSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 306

>pdb|1YI9|A Chain A, Crystal Structure Analysis Of The Oxidized Form Of The M314i Mutant Of Peptidylglycine Alpha-Hydroxylating Monooxygenase Length = 309

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 119/228 (52%), Gaps = 35/228 (15%)
Query: 182 IIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRR 241
           I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQVHY  +  FRD H D SGV +  TR 
Sbjct: 91  ILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRV 150
Query: 242 PLTKEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVV 299
           P    AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V
Sbjct: 151 PQPLIAGMYLMMSVDTVIPPGEKVVNADISC-QYKMYPMHVFAYRVHTHHLGKVVSGYRV 209
Query: 300 KKNNNLNRKDEWLLLGKRDPLTPQMFYPVE--VNVTI-------------------HKG- 337
                  R  +W L+G+++P  PQ FYPVE  V+VT                    H G 
Sbjct: 210 -------RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGG 262
Query: 338 --QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
              DE+CN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 263 TSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAE-ANIPIP 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
1yi9_A	309	PAM, peptidyl-glycine alpha-amidating monooxygenas	8e-42
1yi9_A	309	PAM, peptidyl-glycine alpha-amidating monooxygenas	3e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A Length = 309

 Score =  148 bits (373), Expect = 8e-42
 Identities = 91/253 (35%), Positives = 120/253 (47%), Gaps = 37/253 (14%)

Query: 157 CFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQV 216
           C        YW   +          I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQV
Sbjct: 68  CNMPSSTGSYWFCDEG--TCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQV 125

Query: 217 HYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLGTGGKI--PALSVENMETSCIMME 274
           HY  +  FRD H D SGV +  TR P    AG+ L+ +   +  P   V N + SC   +
Sbjct: 126 HYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVVNADISCQ-YK 184

Query: 275 DKEIHPFAYRTHTHALGKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTI 334
              +H FAYR HTH LGK V GY V       R  +W L+G+++P  PQ FYPVE  V +
Sbjct: 185 MYPMHVFAYRVHTHHLGKVVSGYRV-------RNGQWTLIGRQNPQLPQAFYPVEHPVDV 237

Query: 335 HKGQ------------------------DEMCNFYLMYWVENSSPLETKYCFSEGPPNYY 370
             G                         DE+CN Y+MY++E    L    C     P+ +
Sbjct: 238 TFGDILAARCVFTGEGRTEATHIGGTSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMF 297

Query: 371 WGMGDNLNNIPHP 383
             +     NIP P
Sbjct: 298 RTIPA-EANIPIP 309

>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A Length = 309

 Score = 89.6 bits (221), Expect = 3e-20
 Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 78  LNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKN-YRNHETYVGSTGQDE 136
             R  +W L+G+++P  PQ FYPVE  V +  GD++AARCV     R   T++G T  DE
Sbjct: 208 RVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDE 267

Query: 137 MCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
           +CN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 268 ICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPA-EANIPIP 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 57/383 (14%), Positives = 103/383 (26%), Gaps = 141/383 (36%)

Query: 60  KLKNSKEVQGYVVKKNNNLNRKD-EWLL-----------------LGKRDPL--TPQMFY 99
             K  + VQ +V      + R + ++L+                 + +RD L    Q+F 
Sbjct: 72  LSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 100 PVEVNVTIHKGDVMAARCVMKNYRNHETYV---GSTG-----------QDE--MCNFYL- 142
               NV+  +   +  R  +   R  +  V   G  G                 C     
Sbjct: 128 KY--NVSRLQ-PYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 143 MYWV---ENSSP---LE--TKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLI 194
           ++W+     +SP   LE   K  +   P   +    D+ +NI           +     +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLR----IHSIQAELRRL 237

Query: 195 LPEGVGFKVGGDTAIQY----LVL-QVHYA-HVEGF----------RD-GHTDSSG---- 233
           L               Y    LVL  V  A     F          R    TD       
Sbjct: 238 LKSK-----------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 234 --VFLQYTRRPLTKEAGVLLLGTGGKIPALSVENMETSCIMMEDKEIHPFAYRTHTHAL- 290
             + L +    LT +    LL        L   +     +  E    +P        ++ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLL--------LKYLDCRPQDLPREVLTTNPRR-----LSII 333

Query: 291 GKEVQGYVVKKNNNLNRKDEWLLLGKR----------DPLTP----QMF-----YPVEVN 331
            + ++       + L   D W  +             + L P    +MF     +P   +
Sbjct: 334 AESIR-------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 332 VTIHKGQDEMCNFYLMYWVENSS 354
           +        +     + W +   
Sbjct: 387 IPTIL----LS----LIWFDVIK 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
1yi9_A	309	PAM, peptidyl-glycine alpha-amidating monooxygenas	100.0
1yi9_A	309	PAM, peptidyl-glycine alpha-amidating monooxygenas	99.76

>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A

Probab=100.00  E-value=1.5e-61  Score=475.88  Aligned_cols=265  Identities=31%  Similarity=0.503  Sum_probs=212.1

Q ss_pred             ccCcccceEecCCCeeeEEEEeecC---C-CeeEEEccCCCccceEEEEEEEEcCCCCccccccCCCCCCCCccccCCCC
Q psy9901          98 FYPVEVNVTIHKGDVMAARCVMKNY---R-NHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNL  173 (390)
Q Consensus        98 F~pv~~~v~I~~gD~~ayrC~~~~~---~-~~~~~iG~~gndemVHH~imY~c~~~~~~~~~~C~spg~P~~~W~C~~~~  173 (390)
                      |.....++ ||.++ ++|||+++++   + ++++.++..||+++||||++|.|....           +....|+|+++.
T Consensus        18 ~~l~mp~v-~P~~~-~~Y~C~~~~lp~~~~~hIv~~Ep~gn~~~VHHmlly~c~~~~-----------~~~~~~~C~~~~   84 (309)
T 1yi9_A           18 LDIRMPGV-TPKES-DTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPS-----------STGSYWFCDEGT   84 (309)
T ss_dssp             EEEECSSB-CCCSS-SEEEEEEEECSCSSCEEEEEEEEECCTTTEEEEEEEEESSBS-----------CCSSSEEGGGCS
T ss_pred             EEEECCCC-CCCCC-ceEEEEEEECCCCCCEEEEEEEEeCCCCcEEEEEEEEcCCCC-----------CCCCCccCCCCc
Confidence            33344556 77766 5899999974   3 344466666999999999999998532           123567775332


Q ss_pred             CCCCCCCCceeEeecCCCCcccCCCcceeecCCCCccEEEEEEeeccccCCCCCcccCCCceEEEecCCcceeeEEEeec
Q psy9901         174 NNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPLTKEAGVLLLG  253 (390)
Q Consensus       174 ~~ip~~~~il~aWA~Ga~~~~lP~gvG~~iG~~s~~~~lvLQvHY~np~~~~~g~~D~SGirL~~T~~~r~~~aGvl~~g  253 (390)
                      +  ..++.+|+|||+|++++.||+||||+||+.++++||||||||+|+.++.+++.|+|||||+||+++|+++||+|+++
T Consensus        85 c--~~~~~il~aWa~Ga~~~~~P~~vG~~ig~~~~~~ylvlqvHY~n~~~~~~~~~D~SGirL~~T~~~r~~~aGvl~l~  162 (309)
T 1yi9_A           85 C--TDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMM  162 (309)
T ss_dssp             B--SSCCEEEEEEETTSCCCCCCTTEEEEESTTTSBCEEEEEEEECCCCTTCCCCCBCCEEEEEEESSCCSEEEEEEEEE
T ss_pred             c--CCCCceEEEECCCCCCccCCCCcceECCCCCCCCEEEEEEeECCCccCCCCCccCCeEEEEECCCCCceeeEEEEec
Confidence            1  12468999999999999999999999999888999999999999755457899999999999999999999999988


Q ss_pred             C-CCccCCCCccee-EeEEeecCCCceEEEEeccccccccceEEEEEEecCeecC------CC-cce------EEeCCCC
Q psy9901         254 T-GGKIPALSVENM-ETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN------RK-DEW------LLLGKRD  318 (390)
Q Consensus       254 ~-~~~IPPg~~~~~-~~~C~~~~~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~------~~-~e~------~~l~~gD  318 (390)
                      + .+.||||++++. +++|++.. .+|+|||+++|||++||+|+++++|+|+|+.      +. |++      ..|.+||
T Consensus       163 ~~~~~IPPg~~~~~~~~~Ct~~~-~~i~ifa~~~H~Hl~G~~v~~~~vr~G~e~~I~~~d~~~~Q~~y~l~~~v~i~~GD  241 (309)
T 1yi9_A          163 SVDTVIPPGEKVVNADISCQYKM-YPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGD  241 (309)
T ss_dssp             ECCCCCCSSCSEEEEEEEEECCS-SCEEEEEEEEEESSCEEEEEEEEEETTEEEEEEEECTTSCCSCEEEEEEEEECTTC
T ss_pred             cCCceeCcCCcceEEeeEEeccC-CceEEEEEEceeccCceEEEEEEEECCEEEEcccCCCCCceeEEEcCCceEECCCC
Confidence            7 899999999886 66798754 7899999999999999999999999998642      11 433      4577899


Q ss_pred             CceeEEEEecCCCccccc-C---CccccccceeeeecCCCCccccccccCCCCCceeccCCCCC
Q psy9901         319 PLTPQMFYPVEVNVTIHK-G---QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLN  378 (390)
Q Consensus       319 ~l~~qc~Y~~~~~~~i~~-G---~dEMC~~yl~YYP~~~~~~~~~~C~s~~~~~~~~~~~~~~~  378 (390)
                      .|..+|+||++++..+++ |   .||||++|+||||+......++.|.|.++|+++|+..++.|
T Consensus       242 ~L~~~C~yd~s~r~~~t~~G~~t~dEMC~~yi~Yyp~~~~~~~~~~C~~~~~~~~~~~~p~~~~  305 (309)
T 1yi9_A          242 ILAARCVFTGEGRTEATHIGGTSSDEICNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEAN  305 (309)
T ss_dssp             EEEEEEEEECC--------------CCEEEEEEEEEEGGGCCSEEEECCBSCGGGGGGCCGGGG
T ss_pred             EEEEEEEecCCCCCcceeCCCCccchhhheeEEEEcCcccccchhhhcCCCChHHhccCCcccC
Confidence            999999999998877664 5   99999999999999666667899999999999999888765

>1yi9_A PAM, peptidyl-glycine alpha-amidating monooxygenase; bioactive peptide activation, ascorbate, oxidoreductase; 1.70A {Rattus norvegicus} SCOP: b.121.1.2 b.121.1.2 PDB: 1sdw_A* 3mib_A 3mic_A 3mid_A 3mie_A 3mif_A 3mig_A 3mih_A 3mlj_A 3mlk_A 3mll_A 1yip_A 1phm_A 1opm_A 3phm_A 1yjl_A 1yjk_A

Probab=99.76  E-value=1.6e-18  Score=170.10  Aligned_cols=153  Identities=31%  Similarity=0.589  Sum_probs=116.7

Q ss_pred             eeeee---eecCCcCceEEeeeeec-cCCCccceeee--------------eeccccc----cccccc----ccccceeE
Q psy9901          14 VHCDL---IRLNNTDHIVHTSDISI-SDKNIVGTQIF--------------GYENPCK----TCHPSS----KLKNSKEV   67 (390)
Q Consensus        14 ~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~----~~~~~~----~~~~~~~v   67 (390)
                      +|-+.   ++.+-+|.|++.+-|.- .++..+|..++              .++..|+    .+|+||    +|-+||.|
T Consensus       125 vHY~n~~~~~~~~~D~SGirL~~T~~~r~~~aGvl~l~~~~~~IPPg~~~~~~~~~Ct~~~~~i~ifa~~~H~Hl~G~~v  204 (309)
T 1yi9_A          125 VHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGMYLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVV  204 (309)
T ss_dssp             EEECCCCTTCCCCCBCCEEEEEEESSCCSEEEEEEEEEECCCCCCSSCSEEEEEEEEECCSSCEEEEEEEEEESSCEEEE
T ss_pred             EeECCCccCCCCCccCCeEEEEECCCCCceeeEEEEeccCCceeCcCCcceEEeeEEeccCCceEEEEEEceeccCceEE
Confidence            56655   45688999999987765 66666666433              3346786    599999    79999999


Q ss_pred             EeEEeecCCccCCCCcEEEeeecCCCCCccccCcccceEecCCCeeeEEEEeecC-CCeeEEEccCCCccceEEEEEEEE
Q psy9901          68 QGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-RNHETYVGSTGQDEMCNFYLMYWV  146 (390)
Q Consensus        68 sGy~v~~~~~~~~~~~w~ligk~~P~~PQ~F~pv~~~v~I~~gD~~ayrC~~~~~-~~~~~~iG~~gndemVHH~imY~c  146 (390)
                      ++|.++       +|+|.+|++.|++|||.||++++.++|++||.+.++|+|++. ++..|+.|....||||+.|+||+-
T Consensus       205 ~~~~vr-------~G~e~~I~~~d~~~~Q~~y~l~~~v~i~~GD~L~~~C~yd~s~r~~~t~~G~~t~dEMC~~yi~Yyp  277 (309)
T 1yi9_A          205 SGYRVR-------NGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEICNLYIMYYM  277 (309)
T ss_dssp             EEEEEE-------TTEEEEEEEECTTSCCSCEEEEEEEEECTTCEEEEEEEEECC--------------CCEEEEEEEEE
T ss_pred             EEEEEE-------CCEEEEcccCCCCCceeEEEcCCceEECCCCEEEEEEEecCCCCCcceeCCCCccchhhheeEEEEc
Confidence            999995       367999999999999999999999999999999999999985 677788999999999999999998


Q ss_pred             cCCCCccccccCCCCCCCCccccCCCC
Q psy9901         147 ENSSPLETKYCFSEGPPNYYWGMGDNL  173 (390)
Q Consensus       147 ~~~~~~~~~~C~spg~P~~~W~C~~~~  173 (390)
                      ..+..+....|.+.++|..+|...+.+
T Consensus       278 ~~~~~~~~~~C~~~~~~~~~~~~p~~~  304 (309)
T 1yi9_A          278 EAKYALSFMTCTKNVAPDMFRTIPAEA  304 (309)
T ss_dssp             EGGGCCSEEEECCBSCGGGGGGCCGGG
T ss_pred             CcccccchhhhcCCCChHHhccCCccc
Confidence            776666678899999999999865443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1sdwa2	158	b.121.1.2 (A:199-356) Peptidylglycine alpha-hydrox	3e-25
d1sdwa2	158	b.121.1.2 (A:199-356) Peptidylglycine alpha-hydrox	4e-24
d1sdwa1	154	b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxy	3e-20

>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 158

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: PHM/PNGase F
family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 53/165 (32%), Positives = 72/165 (43%), Gaps = 35/165 (21%)

Query: 245 KEAGVLLLGTGGKI--PALSVENMETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKN 302
             AG+ L+ +   +  P   V N + SC   +   +H FAYR HTH LGK V GY V   
Sbjct: 2   LIAGMYLMMSVDTVIPPGEKVVNADISCQY-KMYPMHVFAYRVHTHHLGKVVSGYRV--- 57

Query: 303 NNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKG------------------------Q 338
               R  +W L+G+++P  PQ FYPVE  V +  G                         
Sbjct: 58  ----RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSS 113

Query: 339 DEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 383
           DEMCN Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 114 DEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPA-EANIPIP 157

>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 158

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: PHM/PNGase F
family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.1 bits (236), Expect = 4e-24
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 80  RKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAARCVMKNY-RNHETYVGSTGQDEMC 138
           R  +W L+G+++P  PQ FYPVE  V +  GD++AARCV     R   T++G T  DEMC
Sbjct: 58  RNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMC 117

Query: 139 NFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHP 179
           N Y+MY++E    L    C     P+ +  +     NIP P
Sbjct: 118 NLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPA-EANIPIP 157

>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 154

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: PHM/PNGase F
family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.3 bits (208), Expect = 3e-20
 Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 157 CFSEGPPNYYWGMGDNLNNIPHPGPIIYAWARDAPSLILPEGVGFKVGGDTAIQYLVLQV 216
           C        YW   +          I+YAWAR+AP   LP+GVGF+VGG+T  +Y VLQV
Sbjct: 70  CNMPSSTGSYWFCDEG--TCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQV 127

Query: 217 HYAHVEGFRDGHTDSSGVFLQYTRRP 242
           HY  +  FRD H D SGV +  TR P
Sbjct: 128 HYGDISAFRDNHKDCSGVSVHLTRVP 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1sdwa2	158	Peptidylglycine alpha-hydroxylating monooxygenase,	99.96
d1sdwa1	154	Peptidylglycine alpha-hydroxylating monooxygenase,	99.95
d1sdwa2	158	Peptidylglycine alpha-hydroxylating monooxygenase,	99.61

>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: PHM/PNGase F
family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.6e-29  Score=224.25  Aligned_cols=138  Identities=30%  Similarity=0.453  Sum_probs=114.8

Q ss_pred             ceeeEEEeecC-CCccCCCCccee-EeEEeecCCCceEEEEeccccccccceEEEEEEecCeecC------C-Cc-----
Q psy9901         244 TKEAGVLLLGT-GGKIPALSVENM-ETSCIMMEDKEIHPFAYRTHTHALGKEVQGYVVKKNNNLN------R-KD-----  309 (390)
Q Consensus       244 ~~~aGvl~~g~-~~~IPPg~~~~~-~~~C~~~~~~~I~ifa~~~H~HllGr~v~~~~~R~g~el~------~-~~-----  309 (390)
                      +++|||+++++ .+.||||++++. +..|.+. ..+|+|||+++|||++||+++++++|+|+++.      . +|     
T Consensus         1 P~~agi~ll~~~~~~IPPg~~~~~~~~~c~~~-~~~i~ifa~~~H~H~lG~~~~~~~~r~~~~~~~~~~~p~~~Q~~y~l   79 (158)
T d1sdwa2           1 PLIAGMYLMMSVDTVIPPGEKVVNADISCQYK-MYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPV   79 (158)
T ss_dssp             SEEEEEEEEECSSCEECTTCSCEEEEEEEECC-SSCEEEEEEEEECCTTEEEEEEEEEETTEEEEEEEECTTSCCCCEEE
T ss_pred             CceeEEEEEEeCCcEECcCCCeEEEeeEEecC-CCceEEEEEEhhhcccceeEEEEEEcCCceEEeeecCCCCCcCeeec
Confidence            57899999998 788999999875 6789865 46799999999999999999999999998642      1 23     


Q ss_pred             -ceEEeCCCCCceeEEEEecCCCcc-cccC---CccccccceeeeecCCCCccccccccCCCCCceeccCCCCC-CCCC
Q psy9901         310 -EWLLLGKRDPLTPQMFYPVEVNVT-IHKG---QDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLN-NIPH  382 (390)
Q Consensus       310 -e~~~l~~gD~l~~qc~Y~~~~~~~-i~~G---~dEMC~~yl~YYP~~~~~~~~~~C~s~~~~~~~~~~~~~~~-~~~~  382 (390)
                       +...|.+||.|..+|+||++++.. +.+|   .||||++|++|||+.+.....+.|.+.+.+++++..+++.+ .||+
T Consensus        80 ~~~v~i~~GD~L~~~C~Ydnt~~~~~v~~G~~t~DEMC~~~~~Yyp~~~~~~~~~~~~~~~~~~~f~~~p~~~~~p~pv  158 (158)
T d1sdwa2          80 EHPVDVTFGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIPV  158 (158)
T ss_dssp             EEEEEECTTCEEEEEEEECCTTCSSCEEBCSSTTSBCCEEEEEEEEEGGGCCSEEEECCBSCGGGGGGCCGGGGSCCCC
T ss_pred             CCceEecCCCEEEEEEEEcCCCCCceEEcCCCCcchhhheeEEEEECCCccccccccCCCCchhhhhcCccccCCcCCC
Confidence             335788999999999999987554 5566   99999999999999555566788999999999998888766 5554

>d1sdwa1 b.121.1.2 (A:45-198) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: PHM/PNGase F
family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.6e-28  Score=216.90  Aligned_cols=118  Identities=34%  Similarity=0.625  Sum_probs=96.6

Q ss_pred             eeEEEEeecC---CCe-eEEEccCCCccceEEEEEEEEcCCCCccccccCCCCCCCCccccCCCCCCCCCCCCceeEeec
Q psy9901         113 MAARCVMKNY---RNH-ETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWGMGDNLNNIPHPGPIIYAWAR  188 (390)
Q Consensus       113 ~ayrC~~~~~---~~~-~~~iG~~gndemVHH~imY~c~~~~~~~~~~C~spg~P~~~W~C~~~~~~ip~~~~il~aWA~  188 (390)
                      |.|||+.++.   +++ .+.++..+|+++|||+++|.|+..           +.++..|.|+++..  +.|..+|++|||
T Consensus        33 d~Y~C~~~~~p~~~~~~i~~~ep~~n~~~VHH~lly~~~~~-----------~~~~~~~~~~~~~~--~~~~~~l~~Wap   99 (154)
T d1sdwa1          33 DTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMP-----------SSTGSYWFCDEGTC--TDKANILYAWAR   99 (154)
T ss_dssp             SEEEEEEEECSCSSCEEEEEEEEECCTTTEEEEEEEEESSB-----------SCCSSSEEGGGCSB--SSCCEEEEEEET
T ss_pred             eeEEEEEecCCCCCceeEEEEEEcCCCCeeEEEEEEEcCCC-----------CCCCCCcccCCCcc--CCCCceEEEEeC
Confidence            5799999975   333 335666589999999999999643           23456788875432  357889999999


Q ss_pred             CCCCcccCCCcceeecCCCCccEEEEEEeeccccCCCCCcccCCCceEEEecCCc
Q psy9901         189 DAPSLILPEGVGFKVGGDTAIQYLVLQVHYAHVEGFRDGHTDSSGVFLQYTRRPL  243 (390)
Q Consensus       189 Ga~~~~lP~gvG~~iG~~s~~~~lvLQvHY~np~~~~~g~~D~SGirL~~T~~~r  243 (390)
                      |+.++.||+++|++||++++.+||||||||+|..++..++.|+|||+||||++++
T Consensus       100 G~~~~~~P~g~G~~vg~~~~~~~lvlQvHY~~~~~~~~~~~D~Sgi~l~~T~~Pq  154 (154)
T d1sdwa1         100 NAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQ  154 (154)
T ss_dssp             TBCCCCCCTTEEEEESTTTSCSEEEEEEEECCTTGGGGCCCBCCEEEEEEESSCC
T ss_pred             CCCCcCCCcccceEccCCCCCCEEEEEeCcCCCCCcccCCccCCEEEEEEcCCCC
Confidence            9999999999999999999999999999999854445678999999999999865

>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: PHM/PNGase F
family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
domain: Peptidylglycine alpha-hydroxylating monooxygenase, PHM
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=5.3e-16  Score=136.55  Aligned_cols=118  Identities=36%  Similarity=0.716  Sum_probs=99.7

Q ss_pred             eeeeeccccc----cccccc----ccccceeEEeEEeecCCccCCCCcEEEeeecCCCCCccccCcccceEecCCCeeeE
Q psy9901          44 QIFGYENPCK----TCHPSS----KLKNSKEVQGYVVKKNNNLNRKDEWLLLGKRDPLTPQMFYPVEVNVTIHKGDVMAA  115 (390)
Q Consensus        44 ~~~~~~~~~~----~~~~~~----~~~~~~~vsGy~v~~~~~~~~~~~w~ligk~~P~~PQ~F~pv~~~v~I~~gD~~ay  115 (390)
                      +.+..+..|.    .+|+||    +|.+||.+++|.++       +++|+++++++|+|+|.||+.++.++|++||.+.+
T Consensus        21 ~~~~~~~~c~~~~~~i~ifa~~~H~H~lG~~~~~~~~r-------~~~~~~~~~~~p~~~Q~~y~l~~~v~i~~GD~L~~   93 (158)
T d1sdwa2          21 KVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVR-------NGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAA   93 (158)
T ss_dssp             SCEEEEEEEECCSSCEEEEEEEEECCTTEEEEEEEEEE-------TTEEEEEEEECTTSCCCCEEEEEEEEECTTCEEEE
T ss_pred             CeEEEeeEEecCCCceEEEEEEhhhcccceeEEEEEEc-------CCceEEeeecCCCCCcCeeecCCceEecCCCEEEE
Confidence            4556676664    699999    79999999999994       46799999999999999999999999999999999


Q ss_pred             EEEeec-CCCeeEEEccCCCccceEEEEEEEEcCCCCccccccCCCCCCCCccc
Q psy9901         116 RCVMKN-YRNHETYVGSTGQDEMCNFYLMYWVENSSPLETKYCFSEGPPNYYWG  168 (390)
Q Consensus       116 rC~~~~-~~~~~~~iG~~gndemVHH~imY~c~~~~~~~~~~C~spg~P~~~W~  168 (390)
                      +|++++ .+++.|..|....||||+.+++|+-..+.+.....|..++.+..++.
T Consensus        94 ~C~Ydnt~~~~~v~~G~~t~DEMC~~~~~Yyp~~~~~~~~~~~~~~~~~~~f~~  147 (158)
T d1sdwa2          94 RCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRT  147 (158)
T ss_dssp             EEEECCTTCSSCEEBCSSTTSBCCEEEEEEEEEGGGCCSEEEECCBSCGGGGGG
T ss_pred             EEEEcCCCCCceEEcCCCCcchhhheeEEEEECCCccccccccCCCCchhhhhc
Confidence            999998 47889999999999999999999987655444456666665655553