Psyllid ID: psy9923

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFKFKKNTYL
ccccccccEEEcccHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHcHHccccccccccEEEEEcccccccccEEEEEEEEcccccccccccccccccEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEccccHHHHHHHHHccEEcccccccccccccccccEEEEEEccEEEEEccc
ccccccccEEEEccccHHHHHcccccHHHHHHHHHHHHcccHcccccHHHEHEHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcEEEEEEcccccccccEEcccEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccccccEEEc
mmvssdgdvtvtndGATILKLMDVDHEIAKLMVQLSqsqddeigdgtTGVVVLAGALLEQAEHLldkgihpiriaDGFELAAQCAVKHLETiadsfpvnpdnlePLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEgkvggkleDTMLVKGVVidkdfshpqmpkeLRDVKLAIltcpfepprpktkhnldvqsVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQkqlpavrwvggpdiELIAIVtggrivprfeeltseklgkaGLVRQTQTMFkfkkntyl
mmvssdgdvtvtndGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETiadsfpvnpDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIkvegkvggkledtMLVKGVVIDkdfshpqmpKELRDVKLAILTCPfepprpktkhnldvqsvEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEltseklgkaglvrqtqtmfkfkkntyl
MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFKFKKNTYL
**********VTNDGATILKLMDVDHEIAKLMVQLSQ***DEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPF*********************LRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQ*************
MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFKFKKNTYL
********VTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFKFKKNTYL
***SSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFKFKKNTYL
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MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFKFKKNTYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
Q68FQ0 541 T-complex protein 1 subun yes N/A 0.958 0.558 0.774 1e-141
Q4R6V2 541 T-complex protein 1 subun N/A N/A 0.958 0.558 0.771 1e-140
P48643 541 T-complex protein 1 subun yes N/A 0.958 0.558 0.771 1e-140
P80316 541 T-complex protein 1 subun yes N/A 0.958 0.558 0.771 1e-140
Q5RF02 541 T-complex protein 1 subun yes N/A 0.958 0.558 0.768 1e-140
O04450 535 T-complex protein 1 subun yes N/A 0.958 0.564 0.698 1e-127
P47209 542 T-complex protein 1 subun yes N/A 0.952 0.553 0.701 1e-127
P54411 535 T-complex protein 1 subun N/A N/A 0.958 0.564 0.682 1e-126
P40412 535 T-complex protein 1 subun N/A N/A 0.958 0.564 0.678 1e-125
Q54TD3 538 T-complex protein 1 subun yes N/A 0.993 0.581 0.673 1e-124
>sp|Q68FQ0|TCPE_RAT T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1 Back     alignment and function desciption
 Score =  499 bits (1286), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/302 (77%), Positives = 272/302 (90%)

Query: 1   MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
           MMV  DGDVTVTNDGATIL +MDVDH+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+
Sbjct: 60  MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEE 119

Query: 61  AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
           AE LLD+GIHPIRIADG+E AA+ A++HL+ I+D+  V+ +N EPLI+TA TTLGSK++N
Sbjct: 120 AEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVN 179

Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
            CHRQMAEIAVNAV+ VAD+E+RDV+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQM
Sbjct: 180 SCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQM 239

Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
           PKE+ + K+AILTCPFEPP+PKTKH LDV SVEDYK L+KYE+EKF  M+ ++K TGA L
Sbjct: 240 PKEVLNAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIAQIKETGANL 299

Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
           AICQWGFDDEANHLLLQ  LPAVRWVGGP+IELIAI TGGRIVPRF ELTSEKLG AG+V
Sbjct: 300 AICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVV 359

Query: 301 RQ 302
           R+
Sbjct: 360 RE 361
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Rattus norvegicus (taxid: 10116)
>sp|Q4R6V2|TCPE_MACFA T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1 Back     alignment and function description
>sp|P48643|TCPE_HUMAN T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1 Back     alignment and function description
>sp|P80316|TCPE_MOUSE T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1 Back     alignment and function description
>sp|Q5RF02|TCPE_PONAB T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1 Back     alignment and function description
>sp|O04450|TCPE_ARATH T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1 Back     alignment and function description
>sp|P47209|TCPE_CAEEL T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1 Back     alignment and function description
>sp|P54411|TCPE2_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1 Back     alignment and function description
>sp|P40412|TCPE1_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1 Back     alignment and function description
>sp|Q54TD3|TCPE_DICDI T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
359843234 545 heat shock protein 60 [Schistocerca greg 0.958 0.554 0.870 1e-153
242017287 551 Hsp60 protein, putative [Pediculus human 0.952 0.544 0.867 1e-152
156546520 542 PREDICTED: T-complex protein 1 subunit e 0.958 0.557 0.857 1e-152
237874211 542 chaperonin containing TCP1, subunit 5 (e 0.958 0.557 0.841 1e-149
170067974 540 T-complex protein 1 subunit epsilon [Cul 0.958 0.559 0.824 1e-148
157123447 540 chaperonin [Aedes aegypti] gi|108882931| 0.958 0.559 0.821 1e-147
125806631 542 GA21078 [Drosophila pseudoobscura pseudo 0.958 0.557 0.814 1e-146
195120660 541 GI20138 [Drosophila mojavensis] gi|19390 0.958 0.558 0.814 1e-146
158296884 540 AGAP008249-PA [Anopheles gambiae str. PE 0.958 0.559 0.824 1e-146
259013613 517 AT19618p [Drosophila melanogaster] 0.958 0.584 0.814 1e-146
>gi|359843234|gb|AEV89752.1| heat shock protein 60 [Schistocerca gregaria] Back     alignment and taxonomy information
 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/302 (87%), Positives = 282/302 (93%)

Query: 1   MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
           MMVS+DGDVTVTNDGATILK MDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ
Sbjct: 61  MMVSADGDVTVTNDGATILKQMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 120

Query: 61  AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
           AE LLDKGIHPIRIADGFELAA  AVKHL++IADSFP + +NLEPLI+TAMTTLGSKI+N
Sbjct: 121 AEQLLDKGIHPIRIADGFELAAHHAVKHLDSIADSFPFDVNNLEPLIQTAMTTLGSKIVN 180

Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
           KCHRQMAEIAVNAV+AVAD+EK+DVNFELIKV GKVGG+LEDTMLVKGVV+DKDFSHPQM
Sbjct: 181 KCHRQMAEIAVNAVLAVADMEKKDVNFELIKVIGKVGGRLEDTMLVKGVVVDKDFSHPQM 240

Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
           PK L+DVKLAILTCPFEPP+PKTKH LDV SVEDYK LR YE EKF  MV +VK TGATL
Sbjct: 241 PKVLKDVKLAILTCPFEPPKPKTKHKLDVTSVEDYKALRAYEAEKFTEMVQQVKGTGATL 300

Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
           AICQWGFDDEANHLLLQK+LPAVRWVGGP+IELIAI TGGRIVPRFEELT +KLG AGLV
Sbjct: 301 AICQWGFDDEANHLLLQKELPAVRWVGGPEIELIAIATGGRIVPRFEELTPDKLGHAGLV 360

Query: 301 RQ 302
           R+
Sbjct: 361 RE 362

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242017287|ref|XP_002429123.1| Hsp60 protein, putative [Pediculus humanus corporis] gi|212513987|gb|EEB16385.1| Hsp60 protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|156546520|ref|XP_001605758.1| PREDICTED: T-complex protein 1 subunit epsilon-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|237874211|ref|NP_001153860.1| chaperonin containing TCP1, subunit 5 (epsilon) [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|170067974|ref|XP_001868689.1| T-complex protein 1 subunit epsilon [Culex quinquefasciatus] gi|167863987|gb|EDS27370.1| T-complex protein 1 subunit epsilon [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157123447|ref|XP_001653838.1| chaperonin [Aedes aegypti] gi|108882931|gb|EAT47156.1| AAEL001715-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|125806631|ref|XP_001360097.1| GA21078 [Drosophila pseudoobscura pseudoobscura] gi|195148982|ref|XP_002015438.1| GL11023 [Drosophila persimilis] gi|54635268|gb|EAL24671.1| GA21078 [Drosophila pseudoobscura pseudoobscura] gi|194109285|gb|EDW31328.1| GL11023 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195120660|ref|XP_002004839.1| GI20138 [Drosophila mojavensis] gi|193909907|gb|EDW08774.1| GI20138 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|158296884|ref|XP_317219.3| AGAP008249-PA [Anopheles gambiae str. PEST] gi|157014926|gb|EAA12349.3| AGAP008249-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|259013613|gb|ACV88437.1| AT19618p [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
FB|FBgn0010621 542 Cct5 "T-complex Chaperonin 5" 0.958 0.557 0.814 1.2e-131
UNIPROTKB|F1NKN0 545 CCT5 "Uncharacterized protein" 0.958 0.554 0.788 2.2e-130
UNIPROTKB|Q5F411 541 CCT5 "Uncharacterized protein" 0.958 0.558 0.788 2.2e-130
ZFIN|ZDB-GENE-030131-977 541 cct5 "chaperonin containing TC 0.958 0.558 0.768 1.2e-127
UNIPROTKB|B7ZAR1 503 CCT5 "T-complex protein 1 subu 0.958 0.600 0.771 8.7e-127
UNIPROTKB|E9PCA1 520 CCT5 "T-complex protein 1 subu 0.958 0.580 0.771 8.7e-127
UNIPROTKB|P48643 541 CCT5 "T-complex protein 1 subu 0.958 0.558 0.771 8.7e-127
UNIPROTKB|F1MWD3 541 CCT5 "Uncharacterized protein" 0.958 0.558 0.768 1.1e-126
RGD|735161 541 Cct5 "chaperonin containing Tc 0.958 0.558 0.774 1.1e-126
UNIPROTKB|E2RB81 540 CCT5 "Uncharacterized protein" 0.958 0.559 0.768 1.8e-126
FB|FBgn0010621 Cct5 "T-complex Chaperonin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 246/302 (81%), Positives = 276/302 (91%)

Query:     1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
             +MVS DGDVTVTNDGATI+KLM+VDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ
Sbjct:    61 IMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 120

Query:    61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
             AE L+D+GIHPIRIADGFELAAQCA+K L+ IA  FPV+P N EPLI+ AMTTLGSKI+N
Sbjct:   121 AEGLIDRGIHPIRIADGFELAAQCAIKQLDAIAQPFPVDPKNKEPLIQIAMTTLGSKIVN 180

Query:   121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
             KCHRQMAE+AV+AV+ VAD+EK+DVNFELIK+E KVGG++ED+MLVKGV++DK  SH QM
Sbjct:   181 KCHRQMAEMAVDAVLNVADIEKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQM 240

Query:   181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
             PKELR+VKLAILTCPFEPP+PKTKH LDV S EDY+ LR+YEQEKF  MV +VK  GATL
Sbjct:   241 PKELRNVKLAILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL 300

Query:   241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
             AICQWGFDDEANHLLLQ++LPAVRWVGGP+IELIAI TGGRIVPRFEELT EKLG AGLV
Sbjct:   301 AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELTPEKLGVAGLV 360

Query:   301 RQ 302
             R+
Sbjct:   361 RE 362
GO:0006457 "protein folding" evidence=ISS
GO:0051082 "unfolded protein binding" evidence=ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0005832 "chaperonin-containing T-complex" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|F1NKN0 CCT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F411 CCT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-977 cct5 "chaperonin containing TCP1, subunit 5 (epsilon)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZAR1 CCT5 "T-complex protein 1 subunit epsilon" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PCA1 CCT5 "T-complex protein 1 subunit epsilon" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P48643 CCT5 "T-complex protein 1 subunit epsilon" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWD3 CCT5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|735161 Cct5 "chaperonin containing Tcp1, subunit 5 (epsilon)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB81 CCT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P47209TCPE_CAEELNo assigned EC number0.70190.95230.5535yesN/A
Q54TD3TCPE_DICDINo assigned EC number0.67300.99360.5817yesN/A
Q68FQ0TCPE_RATNo assigned EC number0.77480.95870.5582yesN/A
P40413TCPE_YEASTNo assigned EC number0.59610.96500.5409yesN/A
P48643TCPE_HUMANNo assigned EC number0.77150.95870.5582yesN/A
P80316TCPE_MOUSENo assigned EC number0.77150.95870.5582yesN/A
Q9UTM4TCPE_SCHPONo assigned EC number0.67880.95870.5531yesN/A
O04450TCPE_ARATHNo assigned EC number0.69860.95870.5644yesN/A
Q5RF02TCPE_PONABNo assigned EC number0.76820.95870.5582yesN/A
Q8SRP9TCPE_ENCCUNo assigned EC number0.54690.93330.5526yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 0.0
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 0.0
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 1e-111
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 3e-99
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 3e-94
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 2e-90
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 2e-90
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-70
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-64
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 2e-58
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-56
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 6e-55
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-54
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 3e-54
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 4e-53
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-52
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 5e-52
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-49
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 5e-46
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 1e-42
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 5e-42
cd03341 472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 5e-38
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 6e-37
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 8e-09
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 3e-08
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 3e-07
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 3e-07
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 4e-07
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 6e-07
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 8e-07
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 2e-05
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 3e-05
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 2e-04
CHL00093 529 CHL00093, groEL, chaperonin GroEL 2e-04
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 2e-04
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information 
 Score =  611 bits (1577), Expect = 0.0
 Identities = 233/302 (77%), Positives = 273/302 (90%)

Query: 1   MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
           ++VS DG+VTVTNDGATIL+ MDVDH+IAKL+V+LS+SQDDEIGDGTTGVVVLAGALLEQ
Sbjct: 51  ILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQ 110

Query: 61  AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
           AE LLD+GIHPIRIADG+E A + AV+HLE IAD    +PDN EPLI+TAMT+LGSKI++
Sbjct: 111 AEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170

Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
           +CHRQ AEIAV+AV++VADLE++DVNFELIKVEGKVGG+LEDT LVKG+VIDKDFSHPQM
Sbjct: 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM 230

Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
           PKE++D K+AILTCPFEPP+PKTKH LD+ SVEDYK+L++YEQ+ F  MV++VK  GA L
Sbjct: 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290

Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
            ICQWGFDDEANHLLLQ  LPAVRWVGG +IELIAI TGGRIVPRFE+L+ EKLGKAGLV
Sbjct: 291 VICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLV 350

Query: 301 RQ 302
           R+
Sbjct: 351 RE 352

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
KOG0361|consensus 543 100.0
KOG0358|consensus 534 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0363|consensus 527 100.0
KOG0360|consensus 545 100.0
KOG0362|consensus 537 100.0
KOG0364|consensus 527 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0359|consensus 520 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.97
KOG0356|consensus 550 99.97
KOG0357|consensus 400 99.94
KOG0230|consensus 1598 99.85
COG1433121 Uncharacterized conserved protein [Function unknow 83.63
PF0257994 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofac 82.9
cd00851103 MTH1175 This uncharacterized conserved protein bel 80.33
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information 
Probab=100.00  E-value=8.8e-67  Score=510.57  Aligned_cols=308  Identities=72%  Similarity=1.161  Sum_probs=294.6

Q ss_pred             CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923           1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL   80 (315)
Q Consensus         1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~   80 (315)
                      ||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++|||+||+++.+|+++|+||+.|++||+.
T Consensus        55 mI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~  134 (532)
T TIGR02343        55 MLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEV  134 (532)
T ss_pred             EEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923          81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL  160 (315)
Q Consensus        81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~  160 (315)
                      |++.++++|++++++++.+..+++.|.++|+|++++|+.+.+.+.|++++++|+..+.+.....+|+++|+|++++|+++
T Consensus       135 a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~  214 (532)
T TIGR02343       135 AARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSL  214 (532)
T ss_pred             HHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCc
Confidence            99999999999987765554568899999999999999999999999999999998865333468889999999999999


Q ss_pred             ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923         161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL  240 (315)
Q Consensus       161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l  240 (315)
                      +||++++|++|++++.+++||++++||||++++++|++++++.+.++.+++++++.++.+.|+++++++++++++.|++|
T Consensus       215 ~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l  294 (532)
T TIGR02343       215 EDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI  294 (532)
T ss_pred             ccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923         241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK  308 (315)
Q Consensus       241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~  308 (315)
                      |+|+++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus       295 vi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~  362 (532)
T TIGR02343       295 VICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTT  362 (532)
T ss_pred             EEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999874

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>KOG0361|consensus Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0356|consensus Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information
>COG1433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria Back     alignment and domain information
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-141
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-107
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 3e-58
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 4e-58
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 5e-58
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 2e-57
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 2e-57
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-55
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-55
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 8e-55
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 1e-54
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-54
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-54
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-54
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 3e-54
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 4e-54
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 2e-53
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-43
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-41
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-39
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-38
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-37
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-37
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-35
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-34
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-33
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-29
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-28
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-27
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-23
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 5e-20
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 2e-17
3iyg_Q 512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-15
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 1e-14
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 4e-06
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-05
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-04
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-04
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 3e-04
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 3e-04
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 3e-04
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 3e-04
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 3e-04
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 3e-04
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 3e-04
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 3e-04
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 3e-04
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 3e-04
1ss8_A 524 Groel Length = 524 4e-04
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 4e-04
1oel_A 547 Conformational Variability In The Refined Structure 4e-04
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 4e-04
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  497 bits (1280), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 231/302 (76%), Positives = 271/302 (89%)
Query: 1   MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
           MMV  DGDVTVTNDGATIL +MDVDH+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+
Sbjct: 38  MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEE 97
Query: 61  AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
           AE LLD+GIHPIRIADG+E AA+ A++HL+ I+DS  V+  N EPLI+TA TTLGSK++N
Sbjct: 98  AEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVN 157
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
            CHRQMAEIAVNAV+ VAD+++RDV+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQM
Sbjct: 158 SCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQM 217
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
           PK++ D K+AILTCPFEPP+PKTKH LDV SVED+K L+KYE+EKF  M+ ++K TGA L
Sbjct: 218 PKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANL 277
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
           A+CQWGFDDEANHLLLQ  LPAVRWVGGP+IELIAI TGGRIVPRF ELT+EKLG AGLV
Sbjct: 278 AVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLV 337
Query: 301 RQ 302
           ++
Sbjct: 338 KE 339
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-160
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-155
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 1e-153
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-152
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 1e-152
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 1e-152
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-152
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-151
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-151
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-151
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-150
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-149
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-149
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-149
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-148
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-148
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-148
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-147
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-146
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-145
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-144
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-143
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 2e-63
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 6e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 4e-05
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 5e-05
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 7e-05
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 8e-05
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
 Score =  455 bits (1172), Expect = e-160
 Identities = 231/304 (75%), Positives = 271/304 (89%)

Query: 1   MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
           MMV  DGDVTVTNDGATIL +MDVDH+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+
Sbjct: 38  MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEE 97

Query: 61  AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
           AE LLD+GIHPIRIADG+E AA+ A++HL+ I+DS  V+  N EPLI+TA TTLGSK++N
Sbjct: 98  AEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVN 157

Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
            CHRQMAEIAVNAV+ VAD+++RDV+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQM
Sbjct: 158 SCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQM 217

Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
           PK++ D K+AILTCPFEPP+PKTKH LDV SVED+K L+KYE+EKF  M+ ++K TGA L
Sbjct: 218 PKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANL 277

Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
           A+CQWGFDDEANHLLLQ  LPAVRWVGGP+IELIAI TGGRIVPRF ELT+EKLG AGLV
Sbjct: 278 AVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLV 337

Query: 301 RQTQ 304
           ++  
Sbjct: 338 KEIS 341
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.48
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.47
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.43
1o13_A136 Probable NIFB protein; ribonuclease H-like motif f 84.95
2yx6_A121 Hypothetical protein PH0822; structural genomics, 83.28
2wfb_A120 Putative uncharacterized protein ORP; mixed molybd 80.53
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
Probab=100.00  E-value=2.2e-70  Score=535.91  Aligned_cols=305  Identities=40%  Similarity=0.590  Sum_probs=293.3

Q ss_pred             CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923           1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL   80 (315)
Q Consensus         1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~   80 (315)
                      ||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus        51 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~  130 (548)
T 1q3q_A           51 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYAL  130 (548)
T ss_dssp             EEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             EEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccc--cCCCCccceEEEeccCC
Q psy9923          81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGG  158 (315)
Q Consensus        81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~--~~~~~~~~I~i~~~~G~  158 (315)
                      |++.++++|++++.+++  ..+++.|.++|+|+++||+.++|+++|++|+++|+.++++..  ...+|+++|+|+++.|+
T Consensus       131 A~~~a~~~L~~~s~~v~--~~d~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~  208 (548)
T 1q3q_A          131 AAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGE  208 (548)
T ss_dssp             HHHHHHHHHHHHCEECC--TTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBS
T ss_pred             HHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCC
Confidence            99999999999977654  346899999999999999999999999999999999998642  23478889999999999


Q ss_pred             CcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923         159 KLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA  238 (315)
Q Consensus       159 ~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~  238 (315)
                      +++||++++|++|++++.+++||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|+
T Consensus       209 ~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~  288 (548)
T 1q3q_A          209 GVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGA  288 (548)
T ss_dssp             CGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923         239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF  307 (315)
Q Consensus       239 ~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~  307 (315)
                      ||||++++|++.|++||.++||.+++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus       289 ~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~  357 (548)
T 1q3q_A          289 NVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG  357 (548)
T ss_dssp             CEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT
T ss_pred             CEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999998874
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A Back     alignment and structure
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 2e-38
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 2e-38
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 4e-38
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 4e-37
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-23
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-22
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 3e-21
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 8e-20
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 8e-19
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 6e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-11
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-11
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  131 bits (331), Expect = 2e-38
 Identities = 44/139 (31%), Positives = 77/139 (55%)

Query: 166 VKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEK 225
           + G+VIDK+  H +MP  +++ K+A++    E  + + +  + +      ++    E   
Sbjct: 1   MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60

Query: 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPR 285
           F  MV+K+K +GA + +CQ G DD A H L ++ + AVR V   D+E +A  TG +IV  
Sbjct: 61  FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120

Query: 286 FEELTSEKLGKAGLVRQTQ 304
            ++LT   LG+A  V + +
Sbjct: 121 LDDLTPSVLGEAETVEERK 139
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.93
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.92
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.9
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.85
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.78
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.71
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.71
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.66
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.65
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.55
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.42
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.42
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.36
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.34
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 98.03
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 97.11
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.98
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.49
d1eo1a_124 Hypothetical protein MTH1175 {Archaeon Methanobact 83.19
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=2.3e-34  Score=234.37  Aligned_cols=141  Identities=35%  Similarity=0.547  Sum_probs=139.0

Q ss_pred             EEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCC
Q psy9923         168 GVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF  247 (315)
Q Consensus       168 G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I  247 (315)
                      |++|++++++++||++++||||++++++|++++++.++++.++++++++.+.++|++++..++++|.+.|+++|||+++|
T Consensus         1 Gvv~~k~~~~~~mpk~i~~~kIlll~~~Le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~nvv~~~k~I   80 (152)
T d1a6db2           1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGI   80 (152)
T ss_dssp             EEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCB
T ss_pred             CEEEeccCCCCCCCCcccCCcEEEEecccccccccccceeeecCHHHHHHHHHHHHHHHHHHHHHHhccCCceEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923         248 DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK  308 (315)
Q Consensus       248 ~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~  308 (315)
                      ++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|+.|+++++|.+
T Consensus        81 dd~a~~~l~k~gI~~v~~v~~~dl~rla~~tGa~iv~s~~~l~~~~LG~~~~v~~~~~g~~  141 (152)
T d1a6db2          81 DDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGED  141 (152)
T ss_dssp             CHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTE
T ss_pred             cHHHHHHHHHcCcchhccCCHHHHHHHHHHhCCeeecchhhCCcccCcCceEEEEEEECCE
Confidence            9999999999999999999999999999999999999999999999999999999999865
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure