Psyllid ID: psy9930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maakkggiidptKVVRTAITDAAGVASLLTTAEAVvtdipkeeaapamggmggmggmggmggmggmm
Flexible Loop (DISEMBL)
maakkggiidptkvVRTAITDAAGVASLLTtaeavvtdipkeeaapamggmggmGGMGGMGGMGGMM
Low Complexity Region (SEG)
MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAmggmggmggmggmggmggmm
Disordered region (IsUnstruct)
*******IIDPTKVVRTAITDAAGVASLLTTAEAVVTD*****************************
Disordered Region (DISOPRED)
***KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT********************GGMGGMGGM*
Disordered Region (DISEMBL)
MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM
Disordered Region (DISPRO)
MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q43298	576	Chaperonin CPN60-2, mitoc	N/A	N/A	0.746	0.086	0.705	1e-13
P18687	573	60 kDa heat shock protein	yes	N/A	0.597	0.069	0.875	1e-12
P63039	573	60 kDa heat shock protein	yes	N/A	0.597	0.069	0.875	2e-12
P63038	573	60 kDa heat shock protein	yes	N/A	0.597	0.069	0.875	2e-12
O02649	573	60 kDa heat shock protein	yes	N/A	0.552	0.064	0.918	4e-12
P31081	573	60 kDa heat shock protein	yes	N/A	0.597	0.069	0.85	4e-12
P10809	573	60 kDa heat shock protein	yes	N/A	0.597	0.069	0.85	5e-12
Q5NVM5	573	60 kDa heat shock protein	yes	N/A	0.597	0.069	0.85	5e-12
Q5ZL72	573	60 kDa heat shock protein	yes	N/A	0.671	0.078	0.844	6e-12
Q9VMN5	576	60 kDa heat shock protein	no	N/A	0.552	0.064	0.891	3e-11

>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA-APAMGGMGGM 54
           K GIIDP KV+RTA+ DAA V+SL+TT E+++ +IPKEEA APAMGGMGGM
Sbjct: 524 KAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGMGGM 574

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Zea mays (taxid: 4577)

>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Cricetulus griseus (taxid: 10029)

>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Rattus norvegicus (taxid: 10116)

>sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Mus musculus (taxid: 10090)

>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial OS=Drosophila melanogaster GN=Hsp60 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/37 (91%), Positives = 37/37 (100%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
           GIIDPTKVVRTAITDA+GVASLLTTAEAVVT+IPKE+
Sbjct: 513 GIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKED 549

Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.

Drosophila melanogaster (taxid: 7227)

>sp|P31081|CH60_BOVIN 60 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPD1 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE  P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Bos taurus (taxid: 9913)

>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE  P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Homo sapiens (taxid: 9606)

>sp|Q5NVM5|CH60_PONAB 60 kDa heat shock protein, mitochondrial OS=Pongo abelii GN=HSPD1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE  P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Pongo abelii (taxid: 9601)

>sp|Q5ZL72|CH60_CHICK 60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 42/45 (93%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGM 51
           GIIDPTKVVRTA+ DAAGVASLL+TAEAVVT++PKEE  PAMGGM
Sbjct: 517 GIIDPTKVVRTALMDAAGVASLLSTAEAVVTEVPKEEKEPAMGGM 561

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Gallus gallus (taxid: 9031)

>sp|Q9VMN5|CH60C_DROME 60 kDa heat shock protein homolog 2, mitochondrial OS=Drosophila melanogaster GN=Hsp60C PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 36/37 (97%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
           GIIDPTKVVRTAI+DAAGVASLLTTAEAVVT++P EE
Sbjct: 517 GIIDPTKVVRTAISDAAGVASLLTTAEAVVTELPLEE 553

Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions (By similarity). Essential for proper development of trachea, spermatogonia and spermatocytes.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
334690960	573	heat shock protein 60 [Bactrocera dorsal	0.626	0.073	0.904	8e-13
195060075	573	GH17925 [Drosophila grimshawi] gi|193896	0.597	0.069	0.95	1e-12
195399117	573	GJ15640 [Drosophila virilis] gi|19415059	0.597	0.069	0.95	1e-12
162460375	576	chaperonin CPN60-2, mitochondrial precur	0.746	0.086	0.705	5e-12
22250	576	mitochondrial chaperonin-60 [Zea mays]	0.746	0.086	0.705	5e-12
289742771	571	heat shock protein 60 [Glossina morsitan	0.611	0.071	0.878	6e-12
332019713	594	60 kDa heat shock protein, mitochondrial	0.626	0.070	0.857	1e-11
322787697	566	hypothetical protein SINV_14312 [Solenop	0.597	0.070	0.9	1e-11
194762616	573	GF20294 [Drosophila ananassae] gi|190629	0.597	0.069	0.9	1e-11
89892745	572	heat shock protein 60 [Liriomyza huidobr	0.611	0.071	0.928	1e-11

>gi|334690960|gb|AEG80296.1| heat shock protein 60 [Bactrocera dorsalis]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/42 (90%), Positives = 41/42 (97%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
           GIIDPTKVVRTAITDA+GVASLLTTAEAVVT+IPKEEAAP +
Sbjct: 513 GIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKEEAAPGL 554

Source: Bactrocera dorsalis

Species: Bactrocera dorsalis

Genus: Bactrocera

Family: Tephritidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195060075|ref|XP_001995750.1| GH17925 [Drosophila grimshawi] gi|193896536|gb|EDV95402.1| GH17925 [Drosophila grimshawi]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/40 (95%), Positives = 40/40 (100%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTAITDAAGVASLLTTAEAVVT+IPKE+AAP
Sbjct: 513 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTEIPKEDAAP 552

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399117|ref|XP_002058167.1| GJ15640 [Drosophila virilis] gi|194150591|gb|EDW66275.1| GJ15640 [Drosophila virilis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/40 (95%), Positives = 40/40 (100%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTAITDAAGVASLLTTAEAVVT+IPKE+AAP
Sbjct: 513 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTEIPKEDAAP 552

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|162460375|ref|NP_001105690.1| chaperonin CPN60-2, mitochondrial precursor [Zea mays] gi|2493646|sp|Q43298.1|CH62_MAIZE RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|309559|gb|AAA33451.1| chaperonin 60 [Zea mays] gi|309561|gb|AAA33452.1| mitochondrial chaperonin 60 [Zea mays] gi|414871207|tpg|DAA49764.1| TPA: putative TCP-1/cpn60 chaperonin family protein [Zea mays]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA-APAMGGMGGM 54
           K GIIDP KV+RTA+ DAA V+SL+TT E+++ +IPKEEA APAMGGMGGM
Sbjct: 524 KAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGMGGM 574

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22250|emb|CAA78101.1| mitochondrial chaperonin-60 [Zea mays]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA-APAMGGMGGM 54
           K GIIDP KV+RTA+ DAA V+SL+TT E+++ +IPKEEA APAMGGMGGM
Sbjct: 524 KAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGMGGM 574

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289742771|gb|ADD20133.1| heat shock protein 60 [Glossina morsitans morsitans]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 40/41 (97%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
           GIIDPTKVVRTAITDA+GVASLLTTAEAVVT++PKEE+ PA
Sbjct: 513 GIIDPTKVVRTAITDASGVASLLTTAEAVVTELPKEESGPA 553

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019713|gb|EGI60183.1| 60 kDa heat shock protein, mitochondrial [Acromyrmex echinatior]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           + GIIDPTKVVRTA+TDAAGVASLLTTAEAVVT+IPKEE  P
Sbjct: 535 EKGIIDPTKVVRTALTDAAGVASLLTTAEAVVTEIPKEEPQP 576

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787697|gb|EFZ13709.1| hypothetical protein SINV_14312 [Solenopsis invicta]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 38/40 (95%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTA+TDAAGVASLLTTAEAVVT+IPKEE  P
Sbjct: 510 GIIDPTKVVRTALTDAAGVASLLTTAEAVVTEIPKEEPQP 549

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762616|ref|XP_001963430.1| GF20294 [Drosophila ananassae] gi|190629089|gb|EDV44506.1| GF20294 [Drosophila ananassae]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 39/40 (97%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
           GIIDPTKVVRTAITDA+GVASLLTTAEAVVT+IPKE+A P
Sbjct: 513 GIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKEDAGP 552

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|89892745|gb|AAW30392.2| heat shock protein 60 [Liriomyza huidobrensis]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 40/42 (95%), Gaps = 1/42 (2%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
           GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE+  PAM
Sbjct: 513 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKED-GPAM 553

Source: Liriomyza huidobrensis

Species: Liriomyza huidobrensis

Genus: Liriomyza

Family: Agromyzidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
FB|FBgn0015245	573	Hsp60 "Heat shock protein 60"	0.611	0.071	0.902	4.8e-13
FB|FBgn0031728	576	Hsp60C "Hsp60C" [Drosophila me	0.611	0.071	0.878	7.4e-12
UNIPROTKB|D4ABH6	565	D4ABH6 "Uncharacterized protei	0.597	0.070	0.875	1.2e-11
UNIPROTKB|Q5ZL72	573	HSPD1 "60 kDa heat shock prote	0.611	0.071	0.829	1.2e-11
MGI|MGI:96242	573	Hspd1 "heat shock protein 1 (c	0.597	0.069	0.875	1.2e-11
RGD|621314	573	Hspd1 "heat shock protein 1 (c	0.597	0.069	0.875	1.2e-11
UNIPROTKB|P63039	573	Hspd1 "60 kDa heat shock prote	0.597	0.069	0.875	1.2e-11
UNIPROTKB|I3L9N6	518	HSPD1 "Uncharacterized protein	0.597	0.077	0.85	2.7e-11
UNIPROTKB|F1MUZ9	573	HSPD1 "60 kDa heat shock prote	0.597	0.069	0.85	3.2e-11
UNIPROTKB|P31081	573	HSPD1 "60 kDa heat shock prote	0.597	0.069	0.85	3.2e-11

FB|FBgn0015245 Hsp60 "Heat shock protein 60" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.8e-13, P = 4.8e-13
 Identities = 37/41 (90%), Positives = 40/41 (97%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
             GIIDPTKVVRTAITDA+GVASLLTTAEAVVT+IPKE+ APA
Sbjct:   513 GIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKEDGAPA 553

GO:0005739 "mitochondrion" evidence=IDA

GO:0009408 "response to heat" evidence=IEP;ISS;NAS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006458 "'de novo' protein folding" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0042026 "protein refolding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

FB|FBgn0031728 Hsp60C "Hsp60C" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 7.4e-12, P = 7.4e-12
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
             GIIDPTKVVRTAI+DAAGVASLLTTAEAVVT++P EEAA A
Sbjct:   517 GIIDPTKVVRTAISDAAGVASLLTTAEAVVTELPLEEAAAA 557

GO:0006457 "protein folding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0006458 "'de novo' protein folding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0007424 "open tracheal system development" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0007301 "female germline ring canal formation" evidence=IMP

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

UNIPROTKB|D4ABH6 D4ABH6 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct:   509 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 548

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

UNIPROTKB|Q5ZL72 HSPD1 "60 kDa heat shock protein, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
             GIIDPTKVVRTA+ DAAGVASLL+TAEAVVT++PKEE  PA
Sbjct:   517 GIIDPTKVVRTALMDAAGVASLLSTAEAVVTEVPKEEKEPA 557

GO:0005524 "ATP binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0002368 "B cell cytokine production" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0002842 "positive regulation of T cell mediated immune response to tumor cell" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA

GO:0030135 "coated vesicle" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0032727 "positive regulation of interferon-alpha production" evidence=IEA

GO:0032729 "positive regulation of interferon-gamma production" evidence=IEA

GO:0032733 "positive regulation of interleukin-10 production" evidence=IEA

GO:0032735 "positive regulation of interleukin-12 production" evidence=IEA

GO:0032755 "positive regulation of interleukin-6 production" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0043032 "positive regulation of macrophage activation" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0044459 "plasma membrane part" evidence=IEA

GO:0046696 "lipopolysaccharide receptor complex" evidence=IEA

GO:0048291 "isotype switching to IgG isotypes" evidence=IEA

GO:0050870 "positive regulation of T cell activation" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:96242 Hspd1 "heat shock protein 1 (chaperonin)" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct:   517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=ISO;IDA

GO:0002020 "protease binding" evidence=ISO

GO:0002039 "p53 binding" evidence=ISO

GO:0002236 "detection of misfolded protein" evidence=ISO

GO:0002368 "B cell cytokine production" evidence=ISO

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=ISO

GO:0002842 "positive regulation of T cell mediated immune response to tumor cell" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005769 "early endosome" evidence=ISO

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006986 "response to unfolded protein" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0030061 "mitochondrial crista" evidence=ISO

GO:0030135 "coated vesicle" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032727 "positive regulation of interferon-alpha production" evidence=ISO;IDA

GO:0032729 "positive regulation of interferon-gamma production" evidence=ISO;IGI;IDA

GO:0032733 "positive regulation of interleukin-10 production" evidence=ISO

GO:0032735 "positive regulation of interleukin-12 production" evidence=ISO

GO:0032755 "positive regulation of interleukin-6 production" evidence=ISO

GO:0042026 "protein refolding" evidence=ISO

GO:0042100 "B cell proliferation" evidence=ISO

GO:0042110 "T cell activation" evidence=IGI;ISO;IDA

GO:0042113 "B cell activation" evidence=ISO

GO:0042588 "zymogen granule" evidence=ISO

GO:0043032 "positive regulation of macrophage activation" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043498 "cell surface binding" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0043559 "insulin binding" evidence=ISO

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0045121 "membrane raft" evidence=ISO

GO:0046696 "lipopolysaccharide receptor complex" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048291 "isotype switching to IgG isotypes" evidence=ISO

GO:0050729 "positive regulation of inflammatory response" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0050870 "positive regulation of T cell activation" evidence=ISO;IDA

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051787 "misfolded protein binding" evidence=ISO

RGD|621314 Hspd1 "heat shock protein 1 (chaperonin)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct:   517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556

GO:0001530 "lipopolysaccharide binding" evidence=ISO

GO:0001666 "response to hypoxia" evidence=IEP

GO:0002020 "protease binding" evidence=IPI

GO:0002039 "p53 binding" evidence=ISO

GO:0002236 "detection of misfolded protein" evidence=IDA

GO:0002368 "B cell cytokine production" evidence=ISO

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=ISO

GO:0002842 "positive regulation of T cell mediated immune response to tumor cell" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005905 "coated pit" evidence=ISO

GO:0006458 "'de novo' protein folding" evidence=IC

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006986 "response to unfolded protein" evidence=ISO

GO:0009408 "response to heat" evidence=IEP

GO:0009986 "cell surface" evidence=ISO;IDA

GO:0010033 "response to organic substance" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0030061 "mitochondrial crista" evidence=IDA

GO:0030135 "coated vesicle" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0032727 "positive regulation of interferon-alpha production" evidence=ISO

GO:0032729 "positive regulation of interferon-gamma production" evidence=ISO

GO:0032733 "positive regulation of interleukin-10 production" evidence=ISO

GO:0032735 "positive regulation of interleukin-12 production" evidence=ISO

GO:0032755 "positive regulation of interleukin-6 production" evidence=ISO

GO:0033198 "response to ATP" evidence=IEP

GO:0042026 "protein refolding" evidence=IEA;ISO

GO:0042100 "B cell proliferation" evidence=ISO

GO:0042110 "T cell activation" evidence=ISO

GO:0042113 "B cell activation" evidence=ISO

GO:0042220 "response to cocaine" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0042588 "zymogen granule" evidence=IDA

GO:0043032 "positive regulation of macrophage activation" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043498 "cell surface binding" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0043559 "insulin binding" evidence=IPI

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0045121 "membrane raft" evidence=IDA

GO:0046696 "lipopolysaccharide receptor complex" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048291 "isotype switching to IgG isotypes" evidence=ISO

GO:0050729 "positive regulation of inflammatory response" evidence=IDA

GO:0050821 "protein stabilization" evidence=ISO

GO:0050870 "positive regulation of T cell activation" evidence=ISO

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IDA

GO:0051087 "chaperone binding" evidence=ISO

GO:0051787 "misfolded protein binding" evidence=IPI

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=ISO

UNIPROTKB|P63039 Hspd1 "60 kDa heat shock protein, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE  P
Sbjct:   517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556

GO:0005524 "ATP binding" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

UNIPROTKB|I3L9N6 HSPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE  P
Sbjct:   462 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 501

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1MUZ9 HSPD1 "60 kDa heat shock protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE  P
Sbjct:   517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556

GO:0051087 "chaperone binding" evidence=IEA

GO:0050870 "positive regulation of T cell activation" evidence=IEA

GO:0048291 "isotype switching to IgG isotypes" evidence=IEA

GO:0046696 "lipopolysaccharide receptor complex" evidence=IEA

GO:0044459 "plasma membrane part" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043032 "positive regulation of macrophage activation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0032755 "positive regulation of interleukin-6 production" evidence=IEA

GO:0032735 "positive regulation of interleukin-12 production" evidence=IEA

GO:0032733 "positive regulation of interleukin-10 production" evidence=IEA

GO:0032729 "positive regulation of interferon-gamma production" evidence=IEA

GO:0032727 "positive regulation of interferon-alpha production" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030135 "coated vesicle" evidence=IEA

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0002842 "positive regulation of T cell mediated immune response to tumor cell" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0002368 "B cell cytokine production" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P31081 HSPD1 "60 kDa heat shock protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 34/40 (85%), Positives = 36/40 (90%)

Query:     7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
             GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE  P
Sbjct:   517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2WAW8	CH60_MAGSA	No assigned EC number	0.65	0.5970	0.0724	yes	N/A
P10809	CH60_HUMAN	No assigned EC number	0.85	0.5970	0.0698	yes	N/A
Q2IZ16	CH601_RHOP2	No assigned EC number	0.6666	0.6119	0.0745	yes	N/A
Q1QIL6	CH603_NITHX	No assigned EC number	0.6744	0.6119	0.0752	yes	N/A
C5CPP8	CH60_VARPS	No assigned EC number	0.7105	0.5671	0.0690	yes	N/A
B4S112	CH60_ALTMD	No assigned EC number	0.5952	0.6268	0.0769	yes	N/A
Q1CVE5	CH60_HELPH	No assigned EC number	0.5909	0.6567	0.0805	yes	N/A
Q9ZN50	CH60_HELPJ	No assigned EC number	0.5909	0.6567	0.0805	yes	N/A
P42383	CH60_HELPY	No assigned EC number	0.5909	0.6567	0.0805	yes	N/A
P63038	CH60_MOUSE	No assigned EC number	0.875	0.5970	0.0698	yes	N/A
P63039	CH60_RAT	No assigned EC number	0.875	0.5970	0.0698	yes	N/A
Q98IV5	CH601_RHILO	No assigned EC number	0.6511	0.6417	0.0791	yes	N/A
Q93MH1	CH60_RHOPL	No assigned EC number	0.6279	0.6417	0.0787	yes	N/A
A5VBQ6	CH60_SPHWW	No assigned EC number	0.6428	0.6119	0.0746	yes	N/A
A4WUL5	CH60_RHOS5	No assigned EC number	0.6279	0.6417	0.0787	yes	N/A
O02649	CH60_DROME	No assigned EC number	0.9189	0.5522	0.0645	yes	N/A
Q0AS40	CH60_MARMM	No assigned EC number	0.7297	0.5522	0.0671	yes	N/A
Q20X88	CH602_RHOPB	No assigned EC number	0.5952	0.6119	0.0744	yes	N/A
B2ICU4	CH60_BEII9	No assigned EC number	0.675	0.5970	0.0729	yes	N/A
Q5NVM5	CH60_PONAB	No assigned EC number	0.85	0.5970	0.0698	yes	N/A
O85754	CH60_RICTY	No assigned EC number	0.5714	0.6268	0.0763	yes	N/A
Q9ZCT7	CH60_RICPR	No assigned EC number	0.5714	0.6268	0.0763	yes	N/A
B5Z6D1	CH60_HELPG	No assigned EC number	0.5909	0.6567	0.0805	yes	N/A
A5G1G2	CH60_ACICJ	No assigned EC number	0.65	0.5970	0.0728	yes	N/A
P31081	CH60_BOVIN	No assigned EC number	0.85	0.5970	0.0698	yes	N/A
Q07TB7	CH601_RHOP5	No assigned EC number	0.6190	0.6119	0.0749	yes	N/A
A7HAD3	CH601_ANADF	No assigned EC number	0.625	0.7164	0.0877	yes	N/A
Q8Y1P8	CH60_RALSO	No assigned EC number	0.5609	0.6119	0.0749	yes	N/A
Q130Z3	CH602_RHOPS	No assigned EC number	0.6666	0.6119	0.0745	yes	N/A
A7HQQ0	CH60_PARL1	No assigned EC number	0.6315	0.5671	0.0690	yes	N/A
P18687	CH60_CRIGR	No assigned EC number	0.875	0.5970	0.0698	yes	N/A
Q1RIZ3	CH60_RICBR	No assigned EC number	0.5714	0.6268	0.0763	yes	N/A
Q28LY7	CH60_JANSC	No assigned EC number	0.6511	0.6417	0.0787	yes	N/A
A8GW07	CH60_RICB8	No assigned EC number	0.5714	0.6268	0.0763	yes	N/A
A9BXL3	CH60_DELAS	No assigned EC number	0.6190	0.6268	0.0767	yes	N/A
Q5ZL72	CH60_CHICK	No assigned EC number	0.8444	0.6716	0.0785	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
PRK00013	542	PRK00013, groEL, chaperonin GroEL; Reviewed	4e-20
PRK12849	542	PRK12849, groEL, chaperonin GroEL; Reviewed	3e-16
PTZ00114	555	PTZ00114, PTZ00114, Heat shock protein 60; Provisi	4e-16
PRK12850	544	PRK12850, groEL, chaperonin GroEL; Reviewed	9e-16
PRK12852	545	PRK12852, groEL, chaperonin GroEL; Reviewed	2e-15
cd03344	520	cd03344, GroEL, GroEL_like type I chaperonin	9e-13
PRK12851	541	PRK12851, groEL, chaperonin GroEL; Reviewed	2e-11
PRK14104	546	PRK14104, PRK14104, chaperonin GroEL; Provisional	4e-11
TIGR02348	524	TIGR02348, GroEL, chaperonin GroL	6e-11
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	3e-09
PLN03167	600	PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr	4e-08
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	1e-06
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	5e-06
CHL00093	529	CHL00093, groEL, chaperonin GroEL	1e-05

>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed

 Score = 81.3 bits (202), Expect = 4e-20
 Identities = 32/53 (60%), Positives = 39/53 (73%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGM 57
           + GIIDPTKV R+A+ +AA VA LL T EAVV D P+++AA    G GGMGGM
Sbjct: 490 EAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGGM 542

Length = 542

>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed

 Score = 70.2 bits (173), Expect = 3e-16
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 2/54 (3%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGM 60
           GIIDP KV R+A+ +AA VA LL T EA+V D P+EE  P  GGMGGMGGMG M
Sbjct: 491 GIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDPP--GGMGGMGGMGHM 542

Length = 542

>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional

 Score = 69.9 bits (172), Expect = 4e-16
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGM 54
           GIIDPTKVVR+A+ DAA VASL+ T EA + D+PKE+          M
Sbjct: 508 GIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEKKKNKNSAAPPM 555

Length = 555

>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed

 Score = 69.0 bits (169), Expect = 9e-16
 Identities = 32/54 (59%), Positives = 39/54 (72%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMG 58
           + GIIDP KV RTA+ DAA +A+LL T EA+V + PK+ AA A G   GMGGMG
Sbjct: 490 EAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGMGGMG 543

Length = 544

>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed

 Score = 67.9 bits (166), Expect = 2e-15
 Identities = 36/52 (69%), Positives = 42/52 (80%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMG 58
           GIIDP KVVRTA+ DAA VA LL T EA+V ++PK++AAPAM   GGMGGMG
Sbjct: 493 GIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGGGMGGMG 544

Length = 545

>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin

 Score = 60.5 bits (148), Expect = 9e-13
 Identities = 23/32 (71%), Positives = 27/32 (84%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38
           GIIDPTKVVR+A+ +AA VASLL T EA+V D
Sbjct: 489 GIIDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520

>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 28/49 (57%), Positives = 34/49 (69%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMG 55
           G+IDP KVVRTA+ +AA VA LL T EA+V + PK+E AP     GGM 
Sbjct: 492 GVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGMD 540

Length = 541

>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 35/52 (67%), Positives = 41/52 (78%), Gaps = 1/52 (1%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA-PAMGGMGGMGGM 57
           GIIDPTKVVRTAI +AA VA+LL T EA+V ++PK+  A PAM   GGMGGM
Sbjct: 493 GIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGGMGGM 544

Length = 546

>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL

 Score = 55.0 bits (133), Expect = 6e-11
 Identities = 22/37 (59%), Positives = 28/37 (75%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
           + GIIDPTKV R+A+ +AA +A LL T EAVV D P+
Sbjct: 488 EAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKPE 524

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 4   KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMG 49
            + GIIDP KV R+A+ +AA  A LL T + ++   P+E+     G
Sbjct: 479 IEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKKPAPPG 524

Length = 524

>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1   MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMG 55
           MAA   GIIDPTKVVR  +  AA VA    T++ VV +I + E  PA   M   G
Sbjct: 546 MAA---GIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNPMDNSG 597

Length = 600

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 43.2 bits (103), Expect = 1e-06
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 3   AKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37
            K+ GIIDP KV R A+  A   ASL+ T + ++ 
Sbjct: 430 MKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 41.4 bits (98), Expect = 5e-06
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 4   KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           K+ GIIDP KV R+A+  A  VASL+ T + ++   P
Sbjct: 445 KEAGIIDPLKVKRSALKSAVEVASLILTIDQIIKAKP 481

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
           GIIDP KV R+A+ +AA +AS++ T E ++ D  +  
Sbjct: 493 GIIDPAKVTRSALQNAASIASMILTTECIIVDKKESS 529

Length = 529

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PRK00013	542	groEL chaperonin GroEL; Reviewed	99.32
PRK12849	542	groEL chaperonin GroEL; Reviewed	99.32
PRK12852	545	groEL chaperonin GroEL; Reviewed	99.28
PRK12850	544	groEL chaperonin GroEL; Reviewed	99.27
PRK14104	546	chaperonin GroEL; Provisional	99.23
PRK12851	541	groEL chaperonin GroEL; Reviewed	99.06
PLN03167	600	Chaperonin-60 beta subunit; Provisional	99.02
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	99.0
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	98.94
CHL00093	529	groEL chaperonin GroEL	98.94
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	98.89
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	98.88
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	98.86
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	98.86
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	98.84
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	98.82
PTZ00114	555	Heat shock protein 60; Provisional	98.82
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	98.78
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	98.78
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	98.78
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	98.78
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	98.77
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	98.77
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	98.75
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	98.75
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	98.75
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	98.73
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	98.72
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	98.7
KOG0356|consensus	550		98.65
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	98.65
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	98.63
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	98.61
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	98.54
KOG0361|consensus	543		98.43
KOG0363|consensus	527		97.95
KOG0362|consensus	537		97.78
KOG0364|consensus	527		97.36
KOG0357|consensus	400		97.08
KOG0358|consensus	534		96.46
KOG0360|consensus	545		95.53
KOG0359|consensus	520		88.96

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=99.32  E-value=2.5e-12  Score=98.16  Aligned_cols=43  Identities=53%  Similarity=0.761  Sum_probs=40.2

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++|||||++||+++|++|+++|++|||+|++|...|...
T Consensus       486 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~  528 (542)
T PRK00013        486 VDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKK  528 (542)
T ss_pred             eehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            4899999999999999999999999999999999999988654

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=99.32  E-value=3.2e-12  Score=97.62  Aligned_cols=43  Identities=53%  Similarity=0.711  Sum_probs=39.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|+.+|.+.
T Consensus       485 ~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~  527 (542)
T PRK12849        485 GDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEE  527 (542)
T ss_pred             ccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccC
Confidence            4899999999999999999999999999999999999987543

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=99.28  E-value=6.3e-12  Score=95.77  Aligned_cols=44  Identities=57%  Similarity=0.823  Sum_probs=40.6

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||++||+++|++|+++|++|||+|++|++.|.++.
T Consensus       487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~  530 (545)
T PRK12852        487 VDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDA  530 (545)
T ss_pred             ccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCC
Confidence            48999999999999999999999999999999999999876543

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=99.27  E-value=7.2e-12  Score=95.63  Aligned_cols=44  Identities=52%  Similarity=0.734  Sum_probs=40.6

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|...|...+
T Consensus       486 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~  529 (544)
T PRK12850        486 GDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAA  529 (544)
T ss_pred             cchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCC
Confidence            48999999999999999999999999999999999999876543

>PRK14104 chaperonin GroEL; Provisional

Probab=99.23  E-value=1.7e-11  Score=93.75  Aligned_cols=43  Identities=58%  Similarity=0.763  Sum_probs=40.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|...|..+
T Consensus       487 ~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~  529 (546)
T PRK14104        487 GNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKG  529 (546)
T ss_pred             eehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence            4899999999999999999999999999999999999987654

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=99.06  E-value=2.2e-10  Score=87.53  Aligned_cols=44  Identities=52%  Similarity=0.693  Sum_probs=40.6

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||+.||+++|++|+++|++|||+|++|...|.+.+
T Consensus       486 ~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~  529 (541)
T PRK12851        486 GDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEP  529 (541)
T ss_pred             cchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCC
Confidence            48999999999999999999999999999999999999876543

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=99.02  E-value=4.3e-10  Score=87.16  Aligned_cols=43  Identities=44%  Similarity=0.597  Sum_probs=39.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++|||||++||+++|++|+++|++|||+|++|+..+.++
T Consensus       543 ~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~  585 (600)
T PLN03167        543 EDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPE  585 (600)
T ss_pred             cchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence            4899999999999999999999999999999999999976554

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.5e-10  Score=86.71  Aligned_cols=43  Identities=40%  Similarity=0.586  Sum_probs=40.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      +||++.|||||++|+++||++|+|+|+++||+|++|.+.|.++
T Consensus       476 ~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~  518 (524)
T COG0459         476 DDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK  518 (524)
T ss_pred             cchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence            3799999999999999999999999999999999999988753

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=98.94  E-value=8.5e-10  Score=83.73  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE   42 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~   42 (67)
                      .||+++|||||++||+++|+.|+++|++|||+|++|...|.+
T Consensus       488 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~  529 (533)
T PTZ00212        488 GDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQ  529 (533)
T ss_pred             cchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCcc
Confidence            489999999999999999999999999999999999987543

>CHL00093 groEL chaperonin GroEL

Probab=98.94  E-value=7.7e-10  Score=84.18  Aligned_cols=41  Identities=39%  Similarity=0.665  Sum_probs=38.7

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|+..|.
T Consensus       487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~  527 (529)
T CHL00093        487 VNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE  527 (529)
T ss_pred             cchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999999998763

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=98.89  E-value=1.5e-09  Score=82.00  Aligned_cols=40  Identities=23%  Similarity=0.335  Sum_probs=38.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      .||++.|||||++||+++|+.|+++|++|||+|++|...|
T Consensus       476 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~  515 (517)
T cd03336         476 GDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP  515 (517)
T ss_pred             cchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence            4899999999999999999999999999999999999876

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=98.88  E-value=1.6e-09  Score=82.42  Aligned_cols=41  Identities=24%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|..+|.
T Consensus       488 ~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~  528 (531)
T TIGR02347       488 IDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS  528 (531)
T ss_pred             cchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence            48999999999999999999999999999999999998664

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=98.86  E-value=2.3e-09  Score=81.48  Aligned_cols=42  Identities=21%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE   42 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~   42 (67)
                      .||+++|||||+.||+++|++|+++|++|||+|++|...|..
T Consensus       482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~  523 (531)
T TIGR02346       482 KDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAG  523 (531)
T ss_pred             cChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCC
Confidence            489999999999999999999999999999999999987543

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=98.86  E-value=2.5e-09  Score=81.10  Aligned_cols=41  Identities=27%  Similarity=0.479  Sum_probs=38.8

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||++.|||||+.||+++|++|+++|++|||+|++|+..|.
T Consensus       477 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~  517 (519)
T TIGR02341       477 ADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR  517 (519)
T ss_pred             cchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence            48999999999999999999999999999999999999773

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=98.84  E-value=2.8e-09  Score=80.15  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      .||++.|||||++||+++|+.|+++|++|||+|++|+..
T Consensus       445 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~  483 (484)
T cd03342         445 MDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG  483 (484)
T ss_pred             cchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence            489999999999999999999999999999999999763

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=98.82  E-value=3.9e-09  Score=79.73  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=38.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      .||++.|||||++||+++|+.|+++|++|||+|++|...|
T Consensus       484 ~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~  523 (525)
T TIGR02344       484 VDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK  523 (525)
T ss_pred             ccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence            4899999999999999999999999999999999998865

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PTZ00114 Heat shock protein 60; Provisional

Probab=98.82  E-value=3.4e-09  Score=81.17  Aligned_cols=42  Identities=60%  Similarity=0.852  Sum_probs=39.6

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE   42 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~   42 (67)
                      .||+++|||||++||+++|++|+++|++|||+|++|+..|..
T Consensus       502 ~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~  543 (555)
T PTZ00114        502 VNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE  543 (555)
T ss_pred             eeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence            489999999999999999999999999999999999997765

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=98.78  E-value=4.5e-09  Score=79.10  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|.+
T Consensus       478 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~  515 (515)
T cd03338         478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA  515 (515)
T ss_pred             cchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence            48999999999999999999999999999999999864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=98.78  E-value=5.9e-09  Score=78.92  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=36.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      .||+++|||||++||+++|++|+++|++|||+|++|...
T Consensus       482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~  520 (522)
T TIGR02345       482 GDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP  520 (522)
T ss_pred             cchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence            489999999999999999999999999999999999773

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03343 cpn60 cpn60 chaperonin family

Probab=98.78  E-value=5.4e-09  Score=78.60  Aligned_cols=38  Identities=24%  Similarity=0.476  Sum_probs=36.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||+++|+.|+++|++|||+|++|+.
T Consensus       479 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  516 (517)
T cd03343         479 VDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA  516 (517)
T ss_pred             cchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence            48999999999999999999999999999999999975

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=98.78  E-value=4.5e-09  Score=79.53  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=37.5

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      .||++.|||||+.||+++|+.|+++|++|||+|++|...|
T Consensus       488 ~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~  527 (527)
T cd03335         488 RDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP  527 (527)
T ss_pred             cchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence            4899999999999999999999999999999999997754

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=98.77  E-value=5.4e-09  Score=78.91  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      .||++.|||||++||+++|+.|+++|++|||+|++|..+
T Consensus       482 ~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~  520 (522)
T cd03340         482 ADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP  520 (522)
T ss_pred             cchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence            489999999999999999999999999999999999774

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02348 GroEL chaperonin GroL

Probab=98.77  E-value=6.6e-09  Score=79.02  Aligned_cols=40  Identities=55%  Similarity=0.755  Sum_probs=37.5

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      .||++.|||||+.||+++|++|+++|++|||+|++|.+.|
T Consensus       484 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~  523 (524)
T TIGR02348       484 EDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP  523 (524)
T ss_pred             cchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence            4899999999999999999999999999999999998754

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=98.75  E-value=5.8e-09  Score=78.87  Aligned_cols=38  Identities=16%  Similarity=0.252  Sum_probs=36.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||++.|||||++||+++|++|+++|++|||+|++|..
T Consensus       479 ~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~  516 (517)
T TIGR02342       479 TDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT  516 (517)
T ss_pred             cchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence            48999999999999999999999999999999999875

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=98.75  E-value=9.9e-09  Score=77.89  Aligned_cols=42  Identities=14%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE   42 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~   42 (67)
                      .||++.|||||+.||+++|+.|+++|++|||+|++|...|.+
T Consensus       492 ~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~  533 (536)
T TIGR02340       492 RDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ  533 (536)
T ss_pred             ccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence            389999999999999999999999999999999999987643

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=98.75  E-value=5.8e-09  Score=78.11  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=35.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus       434 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  471 (472)
T cd03341         434 KDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA  471 (472)
T ss_pred             cChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence            48999999999999999999999999999999999864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=98.73  E-value=7.1e-09  Score=78.45  Aligned_cols=37  Identities=14%  Similarity=0.175  Sum_probs=35.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      .||++.|||||++||+++|+.|+++|++|||+|++|+
T Consensus       490 ~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         490 NDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             CchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence            4899999999999999999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=98.72  E-value=1.1e-08  Score=77.20  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=35.4

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      .||++.|||||++||+++|+.|+++|++|||+|++|+
T Consensus       482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  518 (519)
T TIGR02339       482 EDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA  518 (519)
T ss_pred             cchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence            4899999999999999999999999999999999985

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=98.70  E-value=1.2e-08  Score=75.73  Aligned_cols=37  Identities=41%  Similarity=0.624  Sum_probs=35.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      .||++.|||||++||+++|+.|+|+|++|||+|.+|+
T Consensus       428 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  464 (464)
T cd00309         428 VDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV  464 (464)
T ss_pred             eehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence            3899999999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>KOG0356|consensus

Probab=98.65  E-value=9.7e-09  Score=79.54  Aligned_cols=43  Identities=79%  Similarity=1.023  Sum_probs=41.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++||+||+||+|+||..|.++|++++|++++|++.|+++
T Consensus       499 ~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~  541 (550)
T KOG0356|consen  499 VDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE  541 (550)
T ss_pred             HHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence            4899999999999999999999999999999999999998865

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=98.65  E-value=2.1e-08  Score=76.31  Aligned_cols=37  Identities=14%  Similarity=0.232  Sum_probs=35.4

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      .||++.|||||+.||+++|+.|+++|++|||+|++|.
T Consensus       494 ~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~  530 (532)
T TIGR02343       494 NDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS  530 (532)
T ss_pred             ccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence            4899999999999999999999999999999999985

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=98.63  E-value=2.1e-08  Score=75.32  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=35.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      .||++.|||||+.||+++|+.|+++|++|||+|++|.
T Consensus       443 ~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~  479 (480)
T cd03337         443 VDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS  479 (480)
T ss_pred             ccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence            4899999999999999999999999999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=98.61  E-value=2.1e-08  Score=73.39  Aligned_cols=39  Identities=31%  Similarity=0.515  Sum_probs=37.3

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      ||++.||+||+.||+++|+.|+++|++|||+|.+|.++|
T Consensus       447 ~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~  485 (485)
T PF00118_consen  447 DMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP  485 (485)
T ss_dssp             ETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            799999999999999999999999999999999998864

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>cd03344 GroEL GroEL_like type I chaperonin

Probab=98.54  E-value=4.6e-08  Score=74.50  Aligned_cols=37  Identities=59%  Similarity=0.787  Sum_probs=35.4

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      .||++.|||||+.||+++|++|+++|++|||+|.+|+
T Consensus       483 ~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~  519 (520)
T cd03344         483 VDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV  519 (520)
T ss_pred             cchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence            4899999999999999999999999999999999886

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>KOG0361|consensus

Probab=98.43  E-value=2e-07  Score=71.21  Aligned_cols=46  Identities=22%  Similarity=0.283  Sum_probs=41.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP   46 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~   46 (67)
                      .|+++.+||||..||.+||..|+|+|+++|.+|..|.+.+...++|
T Consensus       485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p  530 (543)
T KOG0361|consen  485 ADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPP  530 (543)
T ss_pred             hhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCC
Confidence            3789999999999999999999999999999999999977655433

>KOG0363|consensus

Probab=97.95  E-value=5.6e-06  Score=63.21  Aligned_cols=43  Identities=19%  Similarity=0.421  Sum_probs=40.5

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||.++||+|+++||++.+.+|.|.|.+|||+|.||.+.|...
T Consensus       481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r  523 (527)
T KOG0363|consen  481 GDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRER  523 (527)
T ss_pred             hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccc
Confidence            3799999999999999999999999999999999999998864

>KOG0362|consensus

Probab=97.78  E-value=1.1e-05  Score=62.69  Aligned_cols=43  Identities=21%  Similarity=0.205  Sum_probs=40.2

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      |..++||||-+.+|++||+.|+++|.++|++|.||++++...|
T Consensus       484 d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp  526 (537)
T KOG0362|consen  484 DVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGP  526 (537)
T ss_pred             ChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCC
Confidence            6789999999999999999999999999999999999887654

>KOG0364|consensus

Probab=97.36  E-value=0.0001  Score=56.96  Aligned_cols=41  Identities=24%  Similarity=0.245  Sum_probs=38.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||.+.+||+|..||.+..++|.+.++++||+|+++.....
T Consensus       483 VDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk  523 (527)
T KOG0364|consen  483 VDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKK  523 (527)
T ss_pred             eeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeee
Confidence            48999999999999999999999999999999999987654

>KOG0357|consensus

Probab=97.08  E-value=0.00037  Score=52.56  Aligned_cols=39  Identities=13%  Similarity=0.103  Sum_probs=36.8

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      ||.+.+|+|++.-|++++..|+.++.|+|++|+|+....
T Consensus       359 DMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~  397 (400)
T KOG0357|consen  359 DMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE  397 (400)
T ss_pred             hhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence            899999999999999999999999999999999988753

>KOG0358|consensus

Probab=96.46  E-value=0.0014  Score=50.45  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=35.5

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .|+++..|+.|++|-.++++.|+|...+||++|||+..
T Consensus       496 tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a  533 (534)
T KOG0358|consen  496 TNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA  533 (534)
T ss_pred             hhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence            37899999999999999999999999999999999864

>KOG0360|consensus

Probab=95.53  E-value=0.007  Score=47.35  Aligned_cols=42  Identities=17%  Similarity=0.260  Sum_probs=38.3

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      |-+++|+++|.-++...|+.|++++-.+||+|+++.-.|+.+
T Consensus       499 dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~  540 (545)
T KOG0360|consen  499 DNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQ  540 (545)
T ss_pred             cceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccc
Confidence            567899999999999999999999999999999999877654

>KOG0359|consensus

Probab=88.96  E-value=0.44  Score=37.34  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             cccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           4 KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         4 ~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      ..+||||-+.|+++.|.+++-+|+-||-+|.|+.+.
T Consensus       480 ~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG  515 (520)
T KOG0359|consen  480 SRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAG  515 (520)
T ss_pred             hhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcc
Confidence            357999999999999999999999999999999774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
2eu1_A	548	Crystal Structure Of The Chaperonin Groel-E461k Len		8e-07
4aaq_A	548	Atp-Triggered Molecular Mechanics Of The Chaperonin		8e-07
1j4z_A	547	Structural And Mechanistic Basis For Allostery In T		8e-07
1grl_A	548	The Crystal Structure Of The Bacterial Chaperonin G		8e-07
1kp8_A	547	Structural Basis For Groel-Assisted Protein Folding		8e-07
1aon_A	547	Crystal Structure Of The Asymmetric Chaperonin Comp		8e-07
1gr5_A	547	Solution Structure Of Apo Groel By Cryo-Electron Mi		8e-07
1oel_A	547	Conformational Variability In The Refined Structure		8e-07
1iok_A	545	Crystal Structure Of Chaperonin-60 From Paracoccus		5e-06
3c9v_A	526	C7 Symmetrized Structure Of Unliganded Groel At 4.7		6e-06
3cau_A	526	D7 Symmetrized Structure Of Unliganded Groel At 4.2		7e-06
1sx3_A	525	Groel14-(Atpgammas)14 Length = 525		7e-06
2yey_A	524	Crystal Structure Of The Allosteric-Defective Chape		2e-05
1ss8_A	524	Groel Length = 524		2e-05
1pcq_A	524	Crystal Structure Of Groel-Groes Length = 524		2e-05
1we3_A	543	Crystal Structure Of The Chaperonin Complex Cpn60CP		9e-05
3rtk_A	546	Crystal Structure Of Cpn60.2 From Mycobacterium Tub		9e-05
1sjp_A	504	Mycobacterium Tuberculosis Chaperonin60.2 Length =		9e-05

>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 492 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 530

>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 492 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 530

>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 529

>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 492 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 530

>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 529

>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 529

>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 529

>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA 529

>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
           K G+IDP KVVRTA+ DAA VA LL T EA++ + P E  APA
Sbjct: 491 KFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP-EPKAPA 532

>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 525

>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 525

>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 525

>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           GI+DPTKV R+A+  AA VA L+ T E +VTD+P
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLP 524

>pdb|1SS8|A Chain A, Groel Length = 524

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           GI+DPTKV R+A+  AA VA L+ T E +VTD+P
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLP 524

>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           GI+DPTKV R+A+  AA VA L+ T E +VTD+P
Sbjct: 491 GILDPTKVTRSALQYAASVAGLMITTECMVTDLP 524

>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP-KEEAAPA 47
           GI+DP KV R+A+ +AA + +L+ T EAVV + P K+E+ PA
Sbjct: 493 GIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA 534

>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           G+ DP KV R+A+ +AA +A L  T EAVV D P++E A
Sbjct: 489 GVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKA 527

>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
           G+ DP KV R+A+ +AA +A L  T EAVV D P++E A
Sbjct: 447 GVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKA 485

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	9e-21
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	6e-18
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	1e-16
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	1e-16
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	2e-04

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547

 Score = 82.6 bits (205), Expect = 9e-21
 Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 4/63 (6%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMG 64
             GI+DPTKV R+A+  AA VA L+ T E +VTD+PK +AA         GGMGGMGGMG
Sbjct: 489 DMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAA----GGMGGMGGMG 544

Query: 65  GMM 67
           GMM
Sbjct: 545 GMM 547

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545

 Score = 74.5 bits (184), Expect = 6e-18
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE-AAPAMGGMGGMGGM 57
           K G+IDP KVVRTA+ DAA VA LL T EA++ + P+ +  A  M  MGGMGGM
Sbjct: 491 KFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPKAPAGGMPDMGGMGGM 544

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546

 Score = 70.7 bits (174), Expect = 1e-16
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMG 58
             G+ DP KV R+A+ +AA +A L  T EAVV D P++E A    G G MGGM 
Sbjct: 487 AAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKASVP-GGGDMGGMD 539

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543

 Score = 70.7 bits (174), Expect = 1e-16
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE-AAPAMGGMGGMG 55
           + GI+DP KV R+A+ +AA + +L+ T EAVV + P+++ + PA  G G M 
Sbjct: 491 EAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPASAGAGDMD 542

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543

 Score = 36.4 bits (85), Expect = 2e-04
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 4   KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGM 63
            + G+++P +V   AI  AA    +L   + V+       A      MG MGGM GMGGM
Sbjct: 484 CENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA----PDMGDMGGMPGMGGM 539

Query: 64  GGMM 67
            GMM
Sbjct: 540 PGMM 543

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	99.64
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	99.61
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	99.57
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	99.48
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	99.38
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	99.36
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	99.31
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	99.28
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	99.18
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	99.18
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	99.14
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	99.12
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	99.1
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	99.08
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	99.07
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	99.07
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	99.05
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	99.05
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	99.03
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	99.03
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	99.02
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	99.01
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	99.01
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	99.0
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	98.99
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	98.9

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=99.64  E-value=4.8e-17  Score=122.99  Aligned_cols=63  Identities=57%  Similarity=0.920  Sum_probs=39.4

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM   67 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   67 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+++ +.+|   ++++|+|||||||||
T Consensus       485 ~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~-~~~~---~~~~~~~~~~~~~~~  547 (547)
T 1kp8_A          485 GNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDA-ADLG---AAGGMGGMGGMGGMM  547 (547)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--------------------------
T ss_pred             ccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccCC-CCCC---CCCCCCCCCCCCCCC
Confidence            38999999999999999999999999999999999999887542 2232   334454566777876

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=99.61  E-value=1.2e-16  Score=120.20  Aligned_cols=63  Identities=40%  Similarity=0.653  Sum_probs=37.8

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM   67 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   67 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+.+ +.+   +++++|+||+||+|||
T Consensus       481 ~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~-~~~---~~~~~~~~~~~~~~~~  543 (543)
T 3ruv_A          481 EDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA-PDM---GDMGGMPGMGGMPGMM  543 (543)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC----------------------------
T ss_pred             ccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccCCC-CCC---CCCCCCCCCCCCCCCC
Confidence            38999999999999999999999999999999999999887654 222   2344555566777775

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=99.57  E-value=4.4e-16  Score=117.61  Aligned_cols=59  Identities=59%  Similarity=0.881  Sum_probs=38.6

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM   67 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   67 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...|.+++ +    .+   +|||||||+|||
T Consensus       487 ~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~-~----~~---~~~~~~~~~~~~  545 (545)
T 1iok_A          487 GDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPKA-P----AG---GMPDMGGMGGMM  545 (545)
T ss_dssp             EEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC---------------------------
T ss_pred             cchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCccCC-C----CC---CCCCCCCCCCCC
Confidence            38999999999999999999999999999999999999876542 2    12   334556677775

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=99.48  E-value=1e-14  Score=108.76  Aligned_cols=44  Identities=16%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...|.+++
T Consensus       438 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~  481 (500)
T 3aq1_B          438 VDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQ  481 (500)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             cchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence            38999999999999999999999999999999999999876543

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=99.38  E-value=1.4e-13  Score=104.28  Aligned_cols=44  Identities=43%  Similarity=0.637  Sum_probs=32.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||++||++||++|+|+|++|||+|++|++.|.+++
T Consensus       483 ~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~  526 (546)
T 3rtk_A          483 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEK  526 (546)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             eeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            38999999999999999999999999999999999999887653

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=99.36  E-value=1.2e-13  Score=104.01  Aligned_cols=42  Identities=24%  Similarity=0.399  Sum_probs=35.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE   42 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~   42 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...|.+
T Consensus       484 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~  525 (545)
T 1a6d_A          484 GDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKST  525 (545)
T ss_dssp             EEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred             ccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            389999999999999999999999999999999999998765

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=99.31  E-value=5.4e-13  Score=100.43  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=38.5

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...|.++
T Consensus       487 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~  529 (548)
T 1q3q_A          487 ADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKP  529 (548)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC---
T ss_pred             cchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence            3899999999999999999999999999999999999987653

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=99.28  E-value=1.1e-12  Score=99.07  Aligned_cols=43  Identities=40%  Similarity=0.706  Sum_probs=39.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|.+.|.++
T Consensus       487 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~  529 (543)
T 1we3_A          487 VDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKK  529 (543)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC-
T ss_pred             cccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence            3899999999999999999999999999999999999988654

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=99.18  E-value=3.1e-12  Score=95.75  Aligned_cols=43  Identities=19%  Similarity=0.408  Sum_probs=37.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++|||||++||++||++|+|+|++|||+|++|.+.|.++
T Consensus       480 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~  522 (527)
T 3p9d_B          480 ADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTA  522 (527)
T ss_dssp             CCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred             cchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccc
Confidence            4899999999999999999999999999999999999987765

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=99.18  E-value=6.1e-12  Score=94.86  Aligned_cols=44  Identities=18%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+++
T Consensus       489 ~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~  532 (550)
T 3p9d_G          489 GDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESA  532 (550)
T ss_dssp             CCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC--
T ss_pred             cchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCcccc
Confidence            48999999999999999999999999999999999999877653

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=99.14  E-value=1.7e-11  Score=92.52  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=40.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE   43 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~   43 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...|+++
T Consensus       510 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~  552 (559)
T 3p9d_A          510 VDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPP  552 (559)
T ss_dssp             EESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCCC
T ss_pred             eehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccc
Confidence            3899999999999999999999999999999999999987655

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=99.12  E-value=3.2e-11  Score=90.14  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=38.1

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|.+.|
T Consensus       473 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~  512 (513)
T 3iyg_B          473 GDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP  512 (513)
T ss_pred             cchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4899999999999999999999999999999999999865

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=99.10  E-value=1.6e-11  Score=92.77  Aligned_cols=44  Identities=27%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+.+
T Consensus       495 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~  538 (553)
T 3ko1_A          495 VDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGG  538 (553)
T ss_dssp             EESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC------
T ss_pred             hHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccC
Confidence            38999999999999999999999999999999999999876543

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=99.08  E-value=2.7e-11  Score=91.05  Aligned_cols=44  Identities=23%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...|.+.+
T Consensus       485 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~  528 (543)
T 1a6d_B          485 EDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSS  528 (543)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC-------
T ss_pred             cchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence            38999999999999999999999999999999999999876543

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.07  E-value=5.5e-11  Score=88.72  Aligned_cols=38  Identities=16%  Similarity=0.129  Sum_probs=36.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus       474 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~  511 (512)
T 3iyg_Q          474 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA  511 (512)
T ss_pred             cchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheec
Confidence            48999999999999999999999999999999999975

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=99.07  E-value=3.8e-11  Score=91.57  Aligned_cols=41  Identities=22%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||+++|||||++||++||++|+|+|++|||+|++|...|.
T Consensus       548 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~  588 (590)
T 3p9d_C          548 VDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRK  588 (590)
T ss_dssp             BCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCCC-
T ss_pred             eehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            48999999999999999999999999999999999998764

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=99.05  E-value=6.1e-11  Score=89.62  Aligned_cols=41  Identities=15%  Similarity=0.115  Sum_probs=38.0

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||+++|||||++||++||++|+|+|++|||+|++|...+.
T Consensus       520 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~  560 (562)
T 3p9d_E          520 NDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKD  560 (562)
T ss_dssp             CBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC-
T ss_pred             cchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            48999999999999999999999999999999999998654

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.05  E-value=9.5e-11  Score=87.69  Aligned_cols=39  Identities=18%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...
T Consensus       476 ~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~  514 (515)
T 3iyg_H          476 ADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP  514 (515)
T ss_pred             cccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            489999999999999999999999999999999999753

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=99.03  E-value=9.5e-11  Score=88.11  Aligned_cols=41  Identities=32%  Similarity=0.384  Sum_probs=38.4

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...+.
T Consensus       499 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~~  539 (546)
T 3p9d_F          499 CDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRS  539 (546)
T ss_dssp             CCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCS
T ss_pred             cchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            48999999999999999999999999999999999988644

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.03  E-value=1.2e-10  Score=87.03  Aligned_cols=38  Identities=11%  Similarity=0.122  Sum_probs=36.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus       477 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  514 (515)
T 3iyg_E          477 NDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP  514 (515)
T ss_pred             cchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            48999999999999999999999999999999999875

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.02  E-value=9.6e-11  Score=87.63  Aligned_cols=38  Identities=18%  Similarity=0.167  Sum_probs=36.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||++||++|+|+|++|||+|+||..
T Consensus       480 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  517 (518)
T 3iyg_D          480 SNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT  517 (518)
T ss_pred             cchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEec
Confidence            48999999999999999999999999999999999875

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.01  E-value=1.3e-10  Score=86.94  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=36.7

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...
T Consensus       476 ~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  514 (515)
T 3iyg_G          476 VDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGH  514 (515)
T ss_pred             cccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence            489999999999999999999999999999999999753

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.01  E-value=1.7e-10  Score=86.53  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=36.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|...
T Consensus       490 ~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  528 (529)
T 3iyg_A          490 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLH  528 (529)
T ss_pred             cChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Confidence            489999999999999999999999999999999999764

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.00  E-value=1.7e-10  Score=86.31  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=36.2

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus       479 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  516 (517)
T 3iyg_Z          479 MVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA  516 (517)
T ss_pred             cchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            48999999999999999999999999999999999875

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=98.99  E-value=1.1e-10  Score=87.61  Aligned_cols=38  Identities=18%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD   38 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~   38 (67)
                      .||+++|||||++||+++|++|+|+|++|||+|+||..
T Consensus       490 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  527 (528)
T 3p9d_D          490 TNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFS  527 (528)
T ss_dssp             CCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBC
T ss_pred             cchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheec
Confidence            48999999999999999999999999999999999875

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=98.90  E-value=1.2e-11  Score=93.47  Aligned_cols=43  Identities=14%  Similarity=0.146  Sum_probs=27.6

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA   44 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~   44 (67)
                      ||+++|||||++||+++|++|+|+|++|||+|++|++.|...+
T Consensus       511 d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~  553 (568)
T 3p9d_H          511 DIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGP  553 (568)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEECBCCC---------------
T ss_pred             ChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCC
Confidence            7999999999999999999999999999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1ioka1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par	2e-09
d1kp8a1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc	5e-08
d1sjpa1	180	a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My	3e-07
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	6e-07

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (117), Expect = 2e-09
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           G+IDP KVVRTA+ DAA VA LL T EA++ + P
Sbjct: 219 GVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 252

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (106), Expect = 5e-08
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK
Sbjct: 218 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 252

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 42.5 bits (99), Expect = 3e-07
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAE 33
             G+ DP KV R+A+ +AA +A L  T E
Sbjct: 152 AAGVADPVKVTRSALQNAASIAGLFLTTE 180

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.2 bits (98), Expect = 6e-07
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           + GI+DP KV R+A+ +AA + +L+ T EAVV + P
Sbjct: 220 EAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.15
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	98.98
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	98.95
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	98.93
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	98.75
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	98.73
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	98.45

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.15  E-value=7.5e-12  Score=81.42  Aligned_cols=33  Identities=39%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CcccccCCccchHHHHHHHHHHHHHHHHHhchh
Q psy9930           1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAE   33 (67)
Q Consensus         1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d   33 (67)
                      .||++.|||||+||+++||++|+|+|++|||+|
T Consensus       148 ~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltte  180 (180)
T d1sjpa1         148 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTE  180 (180)
T ss_dssp             EETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhCC
Confidence            389999999999999999999999999999986

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=5.3e-11  Score=80.03  Aligned_cols=39  Identities=56%  Similarity=0.758  Sum_probs=37.5

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      ||++.||+||++|++++|++|+|++++||++|++|++.|
T Consensus       214 ~~~~~GiidP~kVt~~al~~A~sva~~lltte~~i~~~p  252 (252)
T d1ioka1         214 DMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP  252 (252)
T ss_dssp             EHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred             eeecccccCcHHHHHHHHHHHHhhhhHHHhhceeeecCC
Confidence            789999999999999999999999999999999999876

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=1.1e-10  Score=77.88  Aligned_cols=39  Identities=44%  Similarity=0.734  Sum_probs=37.7

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP   40 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~   40 (67)
                      ||++.||+||++|+++++++|++++.+||++|++|++.|
T Consensus       217 D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~d~~I~~~p  255 (255)
T d1we3a1         217 DMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP  255 (255)
T ss_dssp             ETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred             ehhhcCCcCchHhhHHHHHHHHHHhchHhhcchhhhcCC
Confidence            789999999999999999999999999999999999876

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=98.93  E-value=1.2e-10  Score=78.59  Aligned_cols=36  Identities=28%  Similarity=0.485  Sum_probs=34.6

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT   37 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~   37 (67)
                      ||++.|||||++||+++|++|+|+|++|||+|+||+
T Consensus       208 d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         208 DMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             ETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             ehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999874

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=98.75  E-value=1e-09  Score=73.60  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=33.6

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhh
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVV   36 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi   36 (67)
                      ||++.|||||+.||+++|+.|+++|++|||+|+||
T Consensus       211 d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii  245 (245)
T d1a6da1         211 DMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI  245 (245)
T ss_dssp             EHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             ehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence            78899999999999999999999999999999986

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.8e-09  Score=72.54  Aligned_cols=40  Identities=53%  Similarity=0.733  Sum_probs=38.1

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK   41 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~   41 (67)
                      |+++.||+||++|+++++++|++++++||++|++|++.|+
T Consensus       213 ~~~~~G~idP~~Vt~~al~~a~~~~~~iL~te~~i~~~pe  252 (252)
T d1kp8a1         213 NMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK  252 (252)
T ss_dssp             ETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC
T ss_pred             EEEeeccCCcceeccHhhhhheeccceeEeecccccCCCC
Confidence            7899999999999999999999999999999999999764

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=98.45  E-value=3.2e-08  Score=66.56  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=36.0

Q ss_pred             cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930           2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI   39 (67)
Q Consensus         2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~   39 (67)
                      ||++.|||||+.|+.++++.|++.+.+||++|++|+.+
T Consensus       220 D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak  257 (258)
T d1q3qa1         220 DMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK  257 (258)
T ss_dssp             ETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             EchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence            68889999999999999999999999999999999874