Psyllid ID: psy9933

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
ccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccEEcEEccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHccccccccccccccEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mtrddlfntNASIVRDIIKAVAEVAPKALIgiisnpvnstVPIAAEVLKkagvfdprrlfgvttLDIVRANTFVaeakglnptdvnvpvigghagitiiplisqatpsvsfpddQLKALTGRIQEAVSLKNgieknlglgklsdfEKERQQFSPfiktfasffspqkngieknlglgklsDFEKELVKAAVPELKKNIAKGEEFVAKS
mtrddlfntnasiVRDIIKAVAEVAPKALIgiisnpvnsTVPIAAEVLkkagvfdprrlFGVTTLDIVRANTFvaeakglnptdvnvPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEavslkngieknlglgKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELkkniakgeefvaks
MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
******FNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDF****QQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVK********************
MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA**
MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
**RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query208 2.2.26 [Sep-21-2011]
Q5NVR2338 Malate dehydrogenase, mit yes N/A 0.985 0.606 0.559 1e-60
P40926338 Malate dehydrogenase, mit yes N/A 0.985 0.606 0.559 1e-60
P04636338 Malate dehydrogenase, mit yes N/A 0.985 0.606 0.550 2e-59
Q4R568338 Malate dehydrogenase, mit N/A N/A 0.985 0.606 0.555 3e-59
P00346338 Malate dehydrogenase, mit yes N/A 0.966 0.594 0.536 3e-59
Q32LG3338 Malate dehydrogenase, mit yes N/A 0.966 0.594 0.536 5e-59
P08249338 Malate dehydrogenase, mit yes N/A 0.985 0.606 0.541 7e-59
O02640341 Probable malate dehydroge yes N/A 0.985 0.601 0.519 4e-54
B4F2A1312 Malate dehydrogenase OS=P yes N/A 0.990 0.660 0.510 4e-51
P83373339 Malate dehydrogenase, mit N/A N/A 0.985 0.604 0.523 2e-50
>sp|Q5NVR2|MDHM_PONAB Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1 Back     alignment and function desciption
 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 155/227 (68%), Gaps = 22/227 (9%)

Query: 1   MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
           MTRDDLFNTNA+IV  +  A A+  P+A+I +I+NPVNST+PI AEV KK GV++P ++F
Sbjct: 108 MTRDDLFNTNATIVATLTSACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIF 167

Query: 61  GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
           GVTTLDIVRANTFVAE KGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALT
Sbjct: 168 GVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALT 227

Query: 121 GRIQEAVSLKNGIEKNLGLGKLS-DFEKERQQFS--------------PFIK---TFASF 162
           GRIQEA +     +   G   LS  +   R  FS               F+K   T  ++
Sbjct: 228 GRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTY 287

Query: 163 FSPQ----KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
           FS      K GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 288 FSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 334

Pongo abelii (taxid: 9601)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7
>sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3 Back     alignment and function description
>sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R568|MDHM_MACFA Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1 Back     alignment and function description
>sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q32LG3|MDHM_BOVIN Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=1 SV=1 Back     alignment and function description
>sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3 Back     alignment and function description
>sp|O02640|MDHM_CAEEL Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=3 SV=1 Back     alignment and function description
>sp|B4F2A1|MDH_PROMH Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1 Back     alignment and function description
>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
322792272 379 hypothetical protein SINV_01238 [Solenop 0.995 0.546 0.655 8e-71
383855902 340 PREDICTED: malate dehydrogenase, mitocho 0.995 0.608 0.646 1e-68
307214026 340 Malate dehydrogenase, mitochondrial [Har 0.995 0.608 0.624 2e-68
156553655 341 PREDICTED: malate dehydrogenase, mitocho 0.995 0.607 0.628 3e-68
321457956 340 mitochondrial malate dehydrogenase [Daph 0.980 0.6 0.602 4e-68
91085015 336 PREDICTED: similar to malate dehydrogena 0.995 0.616 0.637 6e-68
332375761 335 unknown [Dendroctonus ponderosae] 0.995 0.617 0.628 8e-68
332023861 341 Malate dehydrogenase, mitochondrial [Acr 0.985 0.601 0.643 1e-67
340717518 340 PREDICTED: malate dehydrogenase, mitocho 0.995 0.608 0.620 3e-67
307180366 340 Malate dehydrogenase, mitochondrial [Cam 0.995 0.608 0.633 4e-67
>gi|322792272|gb|EFZ16256.1| hypothetical protein SINV_01238 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 150/229 (65%), Positives = 169/229 (73%), Gaps = 22/229 (9%)

Query: 1   MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
           MTRDDLFNTNASIVRD+  AVAEVAPKA + IISNPVNSTVPIA EVLKKAGVFDP R+F
Sbjct: 150 MTRDDLFNTNASIVRDLAAAVAEVAPKAFVAIISNPVNSTVPIACEVLKKAGVFDPNRVF 209

Query: 61  GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
           GVTTLDIVRANTF+ EAKGL+P  VNVPVIGGH+GITIIPLISQ TPSVSFP+DQLKALT
Sbjct: 210 GVTTLDIVRANTFIGEAKGLDPQKVNVPVIGGHSGITIIPLISQCTPSVSFPEDQLKALT 269

Query: 121 GRIQEAVSLKNGIEKNLGLGKLS-DFEKERQQFS--------------PFIK---TFASF 162
           GRIQEA +     +   G   LS  F   R   S               ++K   T A +
Sbjct: 270 GRIQEAGTEVVKAKAGTGSATLSMAFAGARFGISLIRALSGETGIIECSYVKSNVTDAKY 329

Query: 163 FSPQ----KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
           FS      KNG+EKNLGLGKLS FE++L+ AA+PELKKNI KGE+F+ K
Sbjct: 330 FSTPILLGKNGLEKNLGLGKLSSFEQKLLDAAIPELKKNIQKGEDFINK 378

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855902|ref|XP_003703449.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307214026|gb|EFN89233.1| Malate dehydrogenase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|156553655|ref|XP_001600547.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|321457956|gb|EFX69032.1| mitochondrial malate dehydrogenase [Daphnia pulex] Back     alignment and taxonomy information
>gi|91085015|ref|XP_973533.1| PREDICTED: similar to malate dehydrogenase [Tribolium castaneum] gi|270008524|gb|EFA04972.1| hypothetical protein TcasGA2_TC015050 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332375761|gb|AEE63021.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|332023861|gb|EGI64085.1| Malate dehydrogenase, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340717518|ref|XP_003397228.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|307180366|gb|EFN68392.1| Malate dehydrogenase, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
ZFIN|ZDB-GENE-040426-2143337 mdh2 "malate dehydrogenase 2, 0.605 0.373 0.730 9.9e-58
UNIPROTKB|Q5NVR2338 MDH2 "Malate dehydrogenase, mi 0.605 0.372 0.730 8.8e-57
UNIPROTKB|G3XAL0231 MDH2 "Malate dehydrogenase" [H 0.605 0.545 0.730 1.1e-56
UNIPROTKB|P40926338 MDH2 "Malate dehydrogenase, mi 0.605 0.372 0.730 1.1e-56
UNIPROTKB|F1PYG8338 MDH2 "Malate dehydrogenase" [C 0.605 0.372 0.722 1.1e-56
RGD|619719338 Mdh2 "malate dehydrogenase 2, 0.605 0.372 0.738 3.8e-56
UNIPROTKB|I3LP41338 MDH2 "Malate dehydrogenase" [S 0.605 0.372 0.722 3.8e-56
UNIPROTKB|P00346338 MDH2 "Malate dehydrogenase, mi 0.605 0.372 0.722 3.8e-56
UNIPROTKB|Q32LG3338 MDH2 "Malate dehydrogenase, mi 0.605 0.372 0.722 6.1e-56
UNIPROTKB|E1BVT3337 MDH2 "Malate dehydrogenase" [G 0.605 0.373 0.738 7.8e-56
ZFIN|ZDB-GENE-040426-2143 mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 473 (171.6 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 92/126 (73%), Positives = 106/126 (84%)

Query:     1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
             MTRDDLFNTNA+IV  ++   A   P+A+I IISNPVNST+PI +EV+KK GV++P ++F
Sbjct:   107 MTRDDLFNTNATIVATLVDGCARHCPQAMICIISNPVNSTIPITSEVMKKHGVYNPNKIF 166

Query:    61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
             GVTTLDIVRANTFVAE KGL+P  VNVPV+GGHAGITIIPLISQ TP V FP DQL ALT
Sbjct:   167 GVTTLDIVRANTFVAELKGLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALT 226

Query:   121 GRIQEA 126
             GRIQEA
Sbjct:   227 GRIQEA 232
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016615 "malate dehydrogenase activity" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0006108 "malate metabolic process" evidence=IEA
GO:0030060 "L-malate dehydrogenase activity" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
UNIPROTKB|Q5NVR2 MDH2 "Malate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|G3XAL0 MDH2 "Malate dehydrogenase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P40926 MDH2 "Malate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|619719 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LG3 MDH2 "Malate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5NVR2MDHM_PONAB1, ., 1, ., 1, ., 3, 70.55940.98550.6065yesN/A
B1LGK2MDH_ECOSM1, ., 1, ., 1, ., 3, 70.48900.99030.6602yesN/A
P08249MDHM_MOUSE1, ., 1, ., 1, ., 3, 70.54180.98550.6065yesN/A
B5XSQ7MDH_KLEP31, ., 1, ., 1, ., 3, 70.47590.99030.6602yesN/A
Q31WA4MDH_SHIBS1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q9ZP06MDHM1_ARATH1, ., 1, ., 1, ., 3, 70.50650.96630.5894yesN/A
B6I1V4MDH_ECOSE1, ., 1, ., 1, ., 3, 70.48030.99030.6602yesN/A
C4ZSX4MDH_ECOBW1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
B7N0M1MDH_ECO811, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q0TCN0MDH_ECOL51, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
B4F2A1MDH_PROMH1, ., 1, ., 1, ., 3, 70.51090.99030.6602yesN/A
B7UJW8MDH_ECO271, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q1R6A3MDH_ECOUT1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q32LG3MDHM_BOVIN1, ., 1, ., 1, ., 3, 70.53670.96630.5946yesN/A
A1AGC9MDH_ECOK11, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q0T052MDH_SHIF81, ., 1, ., 1, ., 3, 70.48030.99030.6602yesN/A
B2U1U9MDH_SHIB31, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
A6TEQ3MDH_KLEP71, ., 1, ., 1, ., 3, 70.48030.99030.6602yesN/A
B7MBZ7MDH_ECO451, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
O02640MDHM_CAEEL1, ., 1, ., 1, ., 3, 70.51980.98550.6011yesN/A
B7LHU4MDH_ECO551, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
A8A545MDH_ECOHS1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
P40926MDHM_HUMAN1, ., 1, ., 1, ., 3, 70.55940.98550.6065yesN/A
B4T769MDH_SALNS1, ., 1, ., 1, ., 3, 70.47160.99030.6602yesN/A
P04636MDHM_RAT1, ., 1, ., 1, ., 3, 70.55060.98550.6065yesN/A
A7MNR3MDH_CROS81, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
B1XHK9MDH_ECODH1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
A7ZSD0MDH_ECO241, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
B2VGW7MDH_ERWT91, ., 1, ., 1, ., 3, 70.49770.98070.6559yesN/A
P00346MDHM_PIG1, ., 1, ., 1, ., 3, 70.53670.96630.5946yesN/A
B7NKU9MDH_ECO7I1, ., 1, ., 1, ., 3, 70.48900.99030.6602yesN/A
P25077MDH_SALTY1, ., 1, ., 1, ., 3, 70.47160.99030.6602yesN/A
B7NDL4MDH_ECOLU1, ., 1, ., 1, ., 3, 70.48900.99030.6602yesN/A
Q3YX11MDH_SHISS1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
P61890MDH_ECOL61, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
A4WF48MDH_ENT381, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q7MYW9MDH_PHOLL1, ., 1, ., 1, ., 3, 70.48450.98070.6538yesN/A
B5YSW2MDH_ECO5E1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
B1IQP3MDH_ECOLC1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A
Q83Q04MDH_SHIFL1, ., 1, ., 1, ., 3, 70.48030.99030.6602yesN/A
A8AQC8MDH_CITK81, ., 1, ., 1, ., 3, 70.48900.99030.6602yesN/A
B7M0U8MDH_ECO8A1, ., 1, ., 1, ., 3, 70.48470.99030.6602yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
cd01337310 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma 1e-103
PLN00106323 PLN00106, PLN00106, malate dehydrogenase 1e-88
TIGR01772312 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, 2e-84
PTZ00325321 PTZ00325, PTZ00325, malate dehydrogenase; Provisio 1e-79
PRK05086312 PRK05086, PRK05086, malate dehydrogenase; Provisio 7e-78
COG0039313 COG0039, Mdh, Malate/lactate dehydrogenases [Energ 2e-34
pfam02866173 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, 6e-31
cd00650263 cd00650, LDH_MDH_like, NAD-dependent, lactate dehy 1e-22
cd01339300 cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik 4e-20
PRK06223307 PRK06223, PRK06223, malate dehydrogenase; Reviewed 2e-19
pfam00056142 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, 1e-18
cd05294309 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas 4e-15
TIGR01763305 TIGR01763, MalateDH_bact, malate dehydrogenase, NA 2e-13
cd00300300 cd00300, LDH_like, L-lactate dehydrogenase-like en 2e-13
PTZ00082321 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi 2e-13
TIGR01771299 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase 9e-12
PTZ00117319 PTZ00117, PTZ00117, malate dehydrogenase; Provisio 2e-11
cd05291306 cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd 4e-11
cd05290307 cd05290, LDH_3, A subgroup of L-lactate dehydrogen 7e-11
cd05292308 cd05292, LDH_2, A subgroup of L-lactate dehydrogen 9e-11
cd05293312 cd05293, LDH_1, A subgroup of L-lactate dehydrogen 3e-09
cd00704323 cd00704, MDH, Malate dehydrogenase 3e-08
PLN02602350 PLN02602, PLN02602, lactate dehydrogenase 1e-06
PRK00066315 PRK00066, ldh, L-lactate dehydrogenase; Reviewed 9e-06
TIGR01759323 TIGR01759, MalateDH-SF1, malate dehydrogenase 2e-05
TIGR01758324 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- 2e-05
cd01338322 cd01338, MDH_choloroplast_like, Chloroplast-like m 3e-05
cd01336325 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an 8e-05
PRK05442326 PRK05442, PRK05442, malate dehydrogenase; Provisio 5e-04
TIGR01756313 TIGR01756, LDH_protist, lactate dehydrogenase 0.001
>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information 
 Score =  299 bits (769), Expect = e-103
 Identities = 133/232 (57%), Positives = 162/232 (69%), Gaps = 32/232 (13%)

Query: 1   MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
           MTRDDLFN NA IVRD+  AVA+  PKALI IISNPVNSTVPIAAEVLKKAGV+DP+RLF
Sbjct: 84  MTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLF 143

Query: 61  GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
           GVTTLD+VRANTFVAE  GL+P  VNVPVIGGH+G+TI+PL+SQ  P  +F  ++++ALT
Sbjct: 144 GVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALT 203

Query: 121 GRIQEA----VSLKNGIEKNLGLGKLS----------------DFEKERQQFSPFIK--- 157
            RIQ      V  K G     G   LS                  EK   + + +++   
Sbjct: 204 HRIQFGGDEVVKAKAG----AGSATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESDV 258

Query: 158 TFASFFS-P---QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
           T A FF+ P    KNG+EKNLGLGKL+D+EK+L++AA+PELKKNI KG +FV
Sbjct: 259 TEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310
>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase Back     alignment and domain information
>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain Back     alignment and domain information
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain Back     alignment and domain information
>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase Back     alignment and domain information
>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase Back     alignment and domain information
>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases Back     alignment and domain information
>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 208
cd01337310 MDH_glyoxysomal_mitochondrial Glyoxysomal and mito 100.0
TIGR01772312 MDH_euk_gproteo malate dehydrogenase, NAD-dependen 100.0
COG0039313 Mdh Malate/lactate dehydrogenases [Energy producti 100.0
PRK05086312 malate dehydrogenase; Provisional 100.0
KOG1495|consensus332 100.0
cd05290307 LDH_3 A subgroup of L-lactate dehydrogenases. L-la 100.0
KOG1494|consensus345 100.0
PTZ00325321 malate dehydrogenase; Provisional 100.0
PLN00135309 malate dehydrogenase 100.0
PLN00106323 malate dehydrogenase 100.0
TIGR01759323 MalateDH-SF1 malate dehydrogenase. This model repr 100.0
TIGR01771299 L-LDH-NAD L-lactate dehydrogenase. This model repr 100.0
cd05293312 LDH_1 A subgroup of L-lactate dehydrogenases. L-la 100.0
cd05291306 HicDH_like L-2-hydroxyisocapronate dehydrogenases 100.0
cd00704323 MDH Malate dehydrogenase. Malate dehydrogenase (MD 100.0
PLN02602350 lactate dehydrogenase 100.0
TIGR01763305 MalateDH_bact malate dehydrogenase, NAD-dependent. 100.0
PRK05442326 malate dehydrogenase; Provisional 100.0
cd00300300 LDH_like L-lactate dehydrogenase-like enzymes. Mem 100.0
cd05292308 LDH_2 A subgroup of L-lactate dehydrogenases. L-la 100.0
PRK00066315 ldh L-lactate dehydrogenase; Reviewed 100.0
TIGR01756313 LDH_protist lactate dehydrogenase. This model repr 100.0
TIGR01757387 Malate-DH_plant malate dehydrogenase, NADP-depende 100.0
PTZ00117319 malate dehydrogenase; Provisional 100.0
cd01338322 MDH_choloroplast_like Chloroplast-like malate dehy 100.0
PLN00112444 malate dehydrogenase (NADP); Provisional 100.0
TIGR01758324 MDH_euk_cyt malate dehydrogenase, NAD-dependent. T 100.0
PTZ00082321 L-lactate dehydrogenase; Provisional 100.0
cd05294309 LDH-like_MDH_nadp A lactate dehydrogenases-like st 100.0
cd01336325 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli 100.0
cd01339300 LDH-like_MDH L-lactate dehydrogenase-like malate d 100.0
PRK06223307 malate dehydrogenase; Reviewed 100.0
cd05295452 MDH_like Malate dehydrogenase-like. These MDH-like 100.0
cd00650263 LDH_MDH_like NAD-dependent, lactate dehydrogenase- 100.0
PF02866174 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta 99.98
KOG1496|consensus332 99.9
cd05197 425 GH4_glycoside_hydrolases Glycoside Hydrases Family 99.66
PF00056141 Ldh_1_N: lactate/malate dehydrogenase, NAD binding 99.65
cd05296 419 GH4_P_beta_glucosidase Glycoside Hydrolases Family 99.5
PRK15076 431 alpha-galactosidase; Provisional 99.46
cd05297 423 GH4_alpha_glucosidase_galactosidase Glycoside Hydr 99.17
cd05298 437 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; 98.93
PF02056183 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP 96.94
COG1486 442 CelF Alpha-galactosidases/6-phospho-beta-glucosida 96.61
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information 
Probab=100.00  E-value=6e-53  Score=367.05  Aligned_cols=201  Identities=65%  Similarity=0.953  Sum_probs=186.1

Q ss_pred             CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933           1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL   80 (208)
Q Consensus         1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v   80 (208)
                      |+|+||+..|++|+++++++|++++|++++|++|||+|+|++++++++|+.++||++||+|+|+|||+||++++|+++|+
T Consensus        84 ~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~l~v  163 (310)
T cd01337          84 MTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGL  163 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHHhCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH-HHHhh---cccccCCccchHH-HHHHHHHhhhc
Q psy9933          81 NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA-VSLKN---GIEKNLGLGKLSD-FEKERQQFSPF  155 (208)
Q Consensus        81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~-~~~~~---~k~~~~g~~~~~~-~a~~~~i~ai~  155 (208)
                      +|++|++||||||||++|||+||++.+..+++++++++|.++++++ +++..   ||    |+|+||+ .|+++++++|+
T Consensus       164 ~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gk----g~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         164 DPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGA----GSATLSMAYAGARFANSLL  239 (310)
T ss_pred             CHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCC----CCcchhHHHHHHHHHHHHH
Confidence            9999999999999889999999999986667777789999999998 55543   57    9999999 99999999996


Q ss_pred             -C---C-------------CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933         156 -I---K-------------TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV  205 (208)
Q Consensus       156 -~---~-------------~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~  205 (208)
                       |   .             ..++|||    +|++||++++++++|+++|+++|++|++.|++.++++++|+
T Consensus       240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence             1   0             2468999    99999999999834999999999999999999999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent Back     alignment and domain information
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK05086 malate dehydrogenase; Provisional Back     alignment and domain information
>KOG1495|consensus Back     alignment and domain information
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>KOG1494|consensus Back     alignment and domain information
>PTZ00325 malate dehydrogenase; Provisional Back     alignment and domain information
>PLN00135 malate dehydrogenase Back     alignment and domain information
>PLN00106 malate dehydrogenase Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase Back     alignment and domain information
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>cd00704 MDH Malate dehydrogenase Back     alignment and domain information
>PLN02602 lactate dehydrogenase Back     alignment and domain information
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent Back     alignment and domain information
>PRK05442 malate dehydrogenase; Provisional Back     alignment and domain information
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>PRK00066 ldh L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01756 LDH_protist lactate dehydrogenase Back     alignment and domain information
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent Back     alignment and domain information
>PTZ00117 malate dehydrogenase; Provisional Back     alignment and domain information
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases Back     alignment and domain information
>PLN00112 malate dehydrogenase (NADP); Provisional Back     alignment and domain information
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent Back     alignment and domain information
>PTZ00082 L-lactate dehydrogenase; Provisional Back     alignment and domain information
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>PRK06223 malate dehydrogenase; Reviewed Back     alignment and domain information
>cd05295 MDH_like Malate dehydrogenase-like Back     alignment and domain information
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>KOG1496|consensus Back     alignment and domain information
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 Back     alignment and domain information
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase Back     alignment and domain information
>PRK15076 alpha-galactosidase; Provisional Back     alignment and domain information
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases Back     alignment and domain information
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases Back     alignment and domain information
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
2dfd_A342 Crystal Structure Of Human Malate Dehydrogenase Typ 1e-61
1mld_A314 Refined Structure Of Mitochondrial Malate Dehydroge 3e-60
2pwz_A312 Crystal Structure Of The Apo Form Of E.Coli Malate 2e-49
1emd_A312 Crystal Structure Of A Ternary Complex Of Escherich 5e-49
1ib6_A312 Crystal Structure Of R153c E. Coli Malate Dehydroge 4e-48
1sev_A362 Mature And Translocatable Forms Of Glyoxysomal Mala 4e-47
1smk_A326 Mature And Translocatable Forms Of Glyoxysomal Mala 4e-47
4e0b_A313 2.17 Angstrom Resolution Crystal Structure Of Malat 2e-45
3tl2_A315 Crystal Structure Of Bacillus Anthracis Str. Ames M 5e-11
1a5z_A319 Lactate Dehydrogenase From Thermotoga Maritima (tml 7e-11
1uxh_A309 Large Improvement In The Thermal Stability Of A Tet 5e-10
1guy_A309 Structural Basis For Thermophilic Protein Stability 6e-10
1ur5_A309 Stabilization Of A Tetrameric Malate Dehydrogenase 6e-10
1uxi_A309 Large Improvement In The Thermal Stability Of A Tet 6e-10
1gv0_A310 Structural Basis For Thermophilic Protein Stability 2e-09
2hjr_A328 Crystal Structure Of Cryptosporidium Parvum Malate 3e-09
3om9_A329 T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex 4e-08
1pze_A331 T.gondii Ldh1 Apo Form Length = 331 4e-08
1pzg_A331 T.Gondii Ldh1 Complexed With Apad And Sulfate At 1. 7e-08
1guz_A310 Structural Basis For Thermophilic Protein Stability 7e-08
1gv1_A310 Structural Basis For Thermophilic Protein Stability 9e-08
3nep_X314 1.55a Resolution Structure Of Malate Dehydrogenase 2e-07
3gvh_A324 Crystal Structure Of LactateMALATE DEHYDROGENASE FR 2e-07
3czm_A326 T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex 9e-07
1sov_A328 Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap 9e-07
2fm3_A321 Crystal Structure Of The Lactate Dehydrogenase From 3e-06
2ewd_A317 Crystal Structure Of The Lactate Dehydrogenase From 3e-06
2ldx_A331 Characterization Of The Antigenic Sites On The Refi 7e-06
2e37_A310 Structure Of Tt0471 Protein From Thermus Thermophil 1e-05
1hyg_A313 Crystal Structure Of Mj0490 Gene Product, The Famil 2e-05
1lld_A319 Molecular Basis Of Allosteric Activation Of Bacteri 2e-05
2v6m_A310 Crystal Structure Of Lactate Dehydrogenase From The 2e-05
2d4a_A308 Structure Of The Malate Dehydrogenase From Aeropyru 5e-05
4a73_A310 Single Point Mutant Of Thermus Thermophilus Lactate 5e-05
2xxb_A310 Penta-Mutant Of Thermus Thermophilus Lactate Dehydr 6e-05
3p7m_A321 Structure Of Putative Lactate Dehydrogenase From Fr 8e-05
2v65_A331 Apo Ldh From The Psychrophile C. Gunnari Length = 3 9e-05
2a92_A321 Crystal Structure Of Lactate Dehydrogenase From Pla 1e-04
1v6a_A332 Crystal Structure Of L-Lactate Dehydrogenase From C 1e-04
1t2e_A322 Plasmodium Falciparum Lactate Dehydrogenase S245a, 2e-04
1xiv_A323 Plasmodium Falciparum Lactate Dehydrogenase Complex 2e-04
1ceq_A316 Chloroquine Binds In The Cofactor Binding Site Of P 2e-04
1t24_A322 Plasmodium Falciparum Lactate Dehydrogenase Complex 2e-04
1u4o_A321 Plasmodium Falciparum Lactate Dehydrogenase Complex 2e-04
2v6b_A304 Crystal Structure Of Lactate Dehydrogenase From Dei 3e-04
1oc4_A322 Lactate Dehydrogenase From Plasmodium Berghei Lengt 4e-04
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342 Back     alignment and structure 
Iteration: 1

 Score =  231 bits (590), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 155/227 (68%), Gaps = 22/227 (9%)
Query: 1   MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
           MTRDDLFNTNA+IV  +  A A+  P+A+I +I+NPVNST+PI AEV KK GV++P ++F
Sbjct: 112 MTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIF 171
Query: 61  GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
           GVTTLDIVRANTFVAE KGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALT
Sbjct: 172 GVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALT 231
Query: 121 GRIQEAVSLKNGIEKNLGLGKLS-DFEKERQQFS--------------PFIK---TFASF 162
           GRIQEA +     +   G   LS  +   R  FS               F+K   T  ++
Sbjct: 232 GRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTY 291
Query: 163 FSP----QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
           FS      K GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 292 FSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 338
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314 Back     alignment and structure
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312 Back     alignment and structure
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312 Back     alignment and structure
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312 Back     alignment and structure
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362 Back     alignment and structure
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326 Back     alignment and structure
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 Back     alignment and structure
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315 Back     alignment and structure
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 Back     alignment and structure
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 Back     alignment and structure
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 Back     alignment and structure
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 Back     alignment and structure
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 Back     alignment and structure
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 Back     alignment and structure
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329 Back     alignment and structure
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331 Back     alignment and structure
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331 Back     alignment and structure
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 Back     alignment and structure
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 Back     alignment and structure
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326 Back     alignment and structure
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328 Back     alignment and structure
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321 Back     alignment and structure
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317 Back     alignment and structure
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 Back     alignment and structure
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310 Back     alignment and structure
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 Back     alignment and structure
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319 Back     alignment and structure
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310 Back     alignment and structure
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 Back     alignment and structure
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310 Back     alignment and structure
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310 Back     alignment and structure
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 Back     alignment and structure
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 Back     alignment and structure
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321 Back     alignment and structure
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 Back     alignment and structure
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322 Back     alignment and structure
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323 Back     alignment and structure
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316 Back     alignment and structure
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322 Back     alignment and structure
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321 Back     alignment and structure
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304 Back     alignment and structure
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 3e-85
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 6e-85
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 2e-73
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 1e-10
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 4e-22
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 5e-20
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 6e-20
3tl2_A315 Malate dehydrogenase; center for structural genomi 7e-20
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 8e-20
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 8e-20
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 1e-19
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 1e-19
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 1e-19
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 1e-19
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 2e-19
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 3e-19
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 3e-19
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 4e-19
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 5e-19
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 7e-19
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 1e-18
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 1e-18
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 1e-18
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 1e-18
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 3e-18
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 3e-18
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 3e-18
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 3e-18
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 4e-18
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 6e-18
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 2e-17
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 2e-17
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 9e-17
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 9e-17
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 2e-16
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 2e-16
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 2e-15
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 Back     alignment and structure
 Score =  254 bits (650), Expect = 3e-85
 Identities = 101/229 (44%), Positives = 135/229 (58%), Gaps = 22/229 (9%)

Query: 1   MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
           MTRDDLF  NA IV+ + + +A+  P+A++ +ISNPVNSTVPIAAEV KKAG +DP+RL 
Sbjct: 92  MTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLL 151

Query: 61  GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
           GVT LD+VRANTFVAE  GL+P DV+VPV+GGHAG+TI+PL+SQ  P  SF  +++  LT
Sbjct: 152 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLT 211

Query: 121 GRIQEA----VSLKNGIEK----------NLGLGKLSDFEKERQQFSP-FIK---TFASF 162
            RIQ      V  K G                   L     +       F+    T   F
Sbjct: 212 DRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPF 271

Query: 163 FS-PQK---NGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
           F+   +   NGIE+   LG L+++E+  ++ A  EL  +I KG  F+  
Sbjct: 272 FASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 Back     alignment and structure
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 Back     alignment and structure
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 100.0
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 100.0
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 100.0
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 100.0
2x0j_A294 Malate dehydrogenase; oxidoreductase, hyperthermop 100.0
3tl2_A315 Malate dehydrogenase; center for structural genomi 100.0
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 100.0
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 100.0
3vku_A326 L-LDH, L-lactate dehydrogenase; rossmann fold, NAD 100.0
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 100.0
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 100.0
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 100.0
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 100.0
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 100.0
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 100.0
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 100.0
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 100.0
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 100.0
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 100.0
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 100.0
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 100.0
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 100.0
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 100.0
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 100.0
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 100.0
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 100.0
4h7p_A345 Malate dehydrogenase; ssgcid, structural G seattle 100.0
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 100.0
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 100.0
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 100.0
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 100.0
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 100.0
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 100.0
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 100.0
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 100.0
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 100.0
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 100.0
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 99.97
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 99.96
1up7_A417 6-phospho-beta-glucosidase; hydrolase, family4 hyd 99.95
1s6y_A450 6-phospho-beta-glucosidase; hydrolase, structural 99.95
1u8x_X472 Maltose-6'-phosphate glucosidase; structural genom 99.92
3fef_A 450 Putative glucosidase LPLD; gulosidase, structural 99.64
1obb_A 480 Maltase, alpha-glucosidase; glycosidase, sulfinic 99.56
3u95_A 477 Glycoside hydrolase, family 4; hydrolysis, cytosol 98.78
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Back     alignment and structure
Probab=100.00  E-value=7.7e-50  Score=347.20  Aligned_cols=200  Identities=54%  Similarity=0.812  Sum_probs=181.1

Q ss_pred             CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCC-CCCCeEEeehhhHHHHHHHHHHHhC
Q psy9933           1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVF-DPRRLFGVTTLDIVRANTFVAEAKG   79 (208)
Q Consensus         1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~-~~~~ViG~~~LDs~R~~~~la~~l~   79 (208)
                      |+|+||+..|++|++++++++.++||+++++++|||+|+|+|++++++ +.+|+ |++||+|+|.||++||++++|+++|
T Consensus        85 ~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~-k~sg~~p~~rv~G~~~LD~~R~~~~la~~lg  163 (312)
T 3hhp_A           85 MDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVL-KKAGVYDKNKLFGVTTLDIIRSNTFVAELKG  163 (312)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHH-HHTTCCCTTSEEECCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHH-HHcCCCCcceEEEEechhHHHHHHHHHHHhC
Confidence            799999999999999999999999999999999999999998766555 55566 9999999999999999999999999


Q ss_pred             CCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH----HHHhhcccccCCccchHH-HHHHHHHhhh
Q psy9933          80 LNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA----VSLKNGIEKNLGLGKLSD-FEKERQQFSP  154 (208)
Q Consensus        80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~----~~~~~~k~~~~g~~~~~~-~a~~~~i~ai  154 (208)
                      ++|++|++||||||||+|++|+||++ +...++++++++|.++|+++    ++.|.|+    |||+||+ +|+++++++|
T Consensus       164 v~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~----gst~~s~a~a~~~~~~ai  238 (312)
T 3hhp_A          164 KQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGG----GSATLSMGQAAARFGLSL  238 (312)
T ss_dssp             CCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTS----CCCCHHHHHHHHHHHHHH
T ss_pred             cChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCC----CCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999998 43458889999999999998    4445566    8999999 9999999998


Q ss_pred             ---c-C-------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9933         155 ---F-I-------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA  206 (208)
Q Consensus       155 ---~-~-------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~~  206 (208)
                         + |             .++++|||    +|++||++++++++||++|+++|++|++.|++.++++++|+.
T Consensus       239 ~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~  311 (312)
T 3hhp_A          239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVN  311 (312)
T ss_dssp             HHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               3 2             13578999    999999999998679999999999999999999999999975
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Back     alignment and structure
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Back     alignment and structure
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Back     alignment and structure
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Back     alignment and structure
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Back     alignment and structure
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Back     alignment and structure
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 208
d1mlda2169 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S 2e-29
d2cmda2167 d.162.1.1 (A:146-312) Malate dehydrogenase {Escher 1e-28
d1hyha2163 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy 9e-19
d1guza2163 d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro 4e-18
d5mdha2179 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S 5e-18
d1ldna2168 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil 6e-18
d1llda2170 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid 9e-18
d2cmda1145 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi 2e-17
d1hyea2168 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd 2e-17
d1o6za2161 d.162.1.1 (A:163-330) Malate dehydrogenase {Archae 2e-17
d1llca2172 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto 3e-17
d1uxja2164 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro 1e-16
d1mlda1144 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s 4e-16
d1ez4a2171 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto 4e-16
d1a5za2172 d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm 1e-15
d1ldma2169 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi 3e-15
d1y6ja2169 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost 4e-14
d1t2da2165 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar 7e-14
d1y7ta1154 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th 7e-14
d1pzga2174 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop 1e-13
d1llda1143 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac 2e-13
d1i0za2172 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human 2e-13
d1b8pa2171 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp 2e-13
d2ldxa2172 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse 2e-13
d1ojua1142 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon 3e-13
d1guza1142 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium 1e-12
d1y7ta2173 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu 2e-12
d1o6za1142 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon 2e-12
d1t2da1150 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p 1e-11
d1pzga1154 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas 2e-11
d2ldxa1159 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu 3e-11
d1uxja1142 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex 5e-11
d1a5za1140 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto 6e-11
d7mdha1175 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( 6e-11
d1y6ja1142 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi 7e-11
d1hyha1146 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro 2e-10
d1ez4a1146 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac 3e-10
d7mdha2188 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu 3e-10
d1hyea1145 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge 5e-10
d1ldna1148 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus 9e-10
d1i0za1160 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho 1e-09
d5mdha1154 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s 4e-09
d1obba1171 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto 3e-06
d1s6ya1169 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci 5e-05
d1up7a1162 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther 2e-04
d1u8xx1167 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase 5e-04
d1ojua2152 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa 0.002
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 81/166 (48%), Positives = 94/166 (56%), Gaps = 22/166 (13%)

Query: 62  VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTG 121
           VTTLDIVRAN FVAE KGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTG
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 122 RIQ----EAVSLKNGIEKNLGLGK-------LSDFEKERQQFSPFIKTFASFFSPQ---- 166
           RIQ    E V  K G                 S  +    +      +F           
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 167 -------KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
                  K GIEKNLG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFV 166
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 Back     information, alignment and structure
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150 Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 Back     information, alignment and structure
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 Back     information, alignment and structure
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 Back     information, alignment and structure
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169 Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 Back     information, alignment and structure
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
d1mlda2169 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 100.0
d2cmda2167 Malate dehydrogenase {Escherichia coli [TaxId: 562 99.98
d1ez4a2171 Lactate dehydrogenase {Lactobacillus pentosus [Tax 99.97
d1hyha2163 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 99.97
d1guza2163 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 99.97
d5mdha2179 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.97
d1uxja2164 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 99.96
d1llda2170 Lactate dehydrogenase {Bifidobacterium longum, str 99.96
d1y6ja2169 Lactate dehydrogenase {Clostridium thermocellum [T 99.96
d1a5za2172 Lactate dehydrogenase {Thermotoga maritima [TaxId: 99.96
d1o6za2161 Malate dehydrogenase {Archaeon Haloarcula marismor 99.96
d1hyea2168 MJ0490, lactate/malate dehydrogenase {Archaeon Met 99.96
d1ldma2169 Lactate dehydrogenase {Dogfish (Squalus acanthias) 99.96
d1ldna2168 Lactate dehydrogenase {Bacillus stearothermophilus 99.96
d1t2da2165 Lactate dehydrogenase {Malaria parasite (Plasmodiu 99.96
d1ojua2152 Lactate dehydrogenase {Archaeon Archaeoglobus fulg 99.96
d1pzga2174 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 99.95
d1i0za2172 Lactate dehydrogenase {Human (Homo sapiens), heart 99.95
d2ldxa2172 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 99.95
d1y7ta2173 Malate dehydrogenase {Thermus thermophilus [TaxId: 99.94
d7mdha2188 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 99.94
d1llca2172 Lactate dehydrogenase {Lactobacillus casei [TaxId: 99.94
d1b8pa2171 Malate dehydrogenase {Aquaspirillum arcticum [TaxI 99.92
d1mlda1144 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.76
d1llda1143 Lactate dehydrogenase {Bifidobacterium longum, str 99.76
d1o6za1142 Malate dehydrogenase {Archaeon Haloarcula marismor 99.73
d1y6ja1142 Lactate dehydrogenase {Clostridium thermocellum [T 99.73
d2cmda1145 Malate dehydrogenase {Escherichia coli [TaxId: 562 99.72
d1ldna1148 Lactate dehydrogenase {Bacillus stearothermophilus 99.71
d1t2da1150 Lactate dehydrogenase {Malaria parasite (Plasmodiu 99.71
d1ojua1142 Malate dehydrogenase {Archaeon Archaeoglobus fulgi 99.71
d1hyha1146 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 99.7
d1a5za1140 Lactate dehydrogenase {Thermotoga maritima [TaxId: 99.69
d1i0za1160 Lactate dehydrogenase {Human (Homo sapiens), heart 99.67
d1uxja1142 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 99.67
d1pzga1154 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 99.66
d1ez4a1146 Lactate dehydrogenase {Lactobacillus pentosus [Tax 99.66
d1guza1142 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 99.65
d2ldxa1159 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 99.64
d1hyea1145 MJ0490, lactate/malate dehydrogenase {Archaeon Met 99.64
d1y7ta1154 Malate dehydrogenase {Thermus thermophilus [TaxId: 99.58
d7mdha1175 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 99.53
d5mdha1154 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.53
d1s6ya1169 6-phospho-beta-glucosidase {Bacillus stearothermop 99.28
d1up7a1162 6-phospho-beta-glucosidase {Thermotoga maritima [T 98.95
d1vjta1193 Putative alpha-glucosidase TM0752 {Thermotoga mari 95.44
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5e-33  Score=219.42  Aligned_cols=142  Identities=63%  Similarity=0.926  Sum_probs=124.7

Q ss_pred             eehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH----HHHhhcccccC
Q psy9933          62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA----VSLKNGIEKNL  137 (208)
Q Consensus        62 ~~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~----~~~~~~k~~~~  137 (208)
                      +|+|||+|||++||++||++|++|++||||||+|++++|+||++.+...++.++++++.++++++    ++.+.++    
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~----   76 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGA----   76 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTS----
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCc----
Confidence            37899999999999999999999999999999889999999999876678999999999999987    4445454    


Q ss_pred             CccchHH-HHHHHHHhhhc-----------------CCCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHH
Q psy9933         138 GLGKLSD-FEKERQQFSPF-----------------IKTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELK  195 (208)
Q Consensus       138 g~~~~~~-~a~~~~i~ai~-----------------~~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~  195 (208)
                      +++.+++ +++++++.++.                 +..+++|||    ||++||++++++|+||++|+++|++|++.||
T Consensus        77 ~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk  156 (169)
T d1mlda2          77 GSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELK  156 (169)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHH
T ss_pred             ChHhHHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            6777778 88888887763                 234678999    9999999999997799999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy9933         196 KNIAKGEEFVAK  207 (208)
Q Consensus       196 ~~i~~~~~~~~~  207 (208)
                      ++|+++++|++.
T Consensus       157 ~~I~~g~~fi~~  168 (169)
T d1mlda2         157 ASIKKGEEFVKN  168 (169)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999863
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure